WARNING: PMID '30599920 referencing id but no author overlap' malformed and ignored
WARNING: PMID '29654922 id not listed in paper but many others, title diff' malformed and ignored
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ProteomeXchange Datasets
Last refresh: Wed Apr 23 14:00:03 PDT 2025
Articles in PubMed that reference a PXD that has not been announced
PXD061607 (from PRIDE)Dataset title: Possible reference: Tretiak, S. et al. (2025) Blood proteome profiling for biomarker discovery in broilers with necrotic enteritis., Sci Rep, PMID 40234672
PXD061023 (from PRIDE)Dataset title: Possible reference: Morcos, A. et al. (2025) Seco-Duocarmycin SA in Aggressive Glioblastoma Cell Lines., Int J Mol Sci, PMID 40141405
PXD059765 (from PRIDE)Dataset title: Possible reference: Wijeweera, S. et al. (2025) Spatial and development responses in the wheat leaf highlight the loss of chloroplast protein homeostasis during salt stress., J Proteomics, PMID 40189140
PXD058482 (from PRIDE)Dataset title: Possible reference: Hou, Y. et al. (2025) The crucial role of neutrophil extracellular traps and IL-17 signaling in indomethacin-induced gastric injury in mice., Sci Rep, PMID 40204883
PXD058176 (from PRIDE)Dataset title: Possible reference: Sun, Z. et al. (2025) AKT1 Phosphorylates FDX1 to Promote Cuproptosis Resistance in Triple-Negative Breast Cancer., Adv Sci (Weinh), PMID 39976173
PXD056912 (from PRIDE)Dataset title: Possible reference: Schulan, P. et al. (2022) Oxidative modifications control aberrant tyrosine kinase activity., Biointerphases, PMID 39620887
PXD056495 (from PRIDE)Dataset title: Possible reference: Ivanović, SR. et al. (2024) The Venom of Vipera ammodytes ammodytes: Proteomics, Neurotoxic Effect and Neutralization by Antivenom., Vet Sci, PMID 39728945
PXD056424 (from PRIDE)Dataset title: Possible reference: Castelló-Ruiz, M. et al. (2025) Effect of Capacitation on Proteomic Profile and Mitochondrial Parameters of Spermatozoa in Bulls., J Proteome Res, PMID 40133237
PXD056374 (from PRIDE)Dataset title: Possible reference: Zhou, J. et al. (2025) Plasma IgG Glycosylation Profiling Reveals the Biological Features of Early Chronic Obstructive Pulmonary Disease., J Proteome Res, PMID 40036685
PXD055986 (from PRIDE)Dataset title: Possible reference: Li, A. et al. (2024) Myocardial Posttranscriptional Landscape in Peripartum Cardiomyopathy., Circ Heart Fail, PMID 39513265
PXD055913 (from PRIDE)Dataset title: Possible reference: Liao, Z. et al. (2025) Disruption of oocyte SUMOylation impacts critical regulatory processes during folliculogenesis in mice., Biol Reprod, PMID 39982420
PXD055817 (from PRIDE)Dataset title: Possible reference: Lopes, MES. et al. (2025) Effects of periodontal disease on the proteomic profile of the periodontal ligament., J Proteomics, PMID 39800186
PXD055302 (from PRIDE)Dataset title: Possible reference: Moore, M. et al. (2024) ALK1 Signaling in Human Cardiac Progenitor Cells Promotes a Pro-angiogenic Secretome., J Cell Signal, PMID 39430425
PXD055284 (from PRIDE)Dataset title: Possible reference: Swati, B. et al. (2025) DSSBU: A novel mass spectrometry-cleavable analogue of the BS3 cross-linker., J Proteomics, PMID 39427986
PXD054190 (from PRIDE)Dataset title: Possible reference: Sharma, V. et al. (2024) Label-based comparative proteomics of oral mucosal tissue to understand progression of precancerous lesions to oral squamous cell carcinoma., Biochem Biophys Rep, PMID 39483176
PXD053720 (from PRIDE)Dataset title: Possible reference: Ying, G. et al. (2025) A Fast, High-Sensitivity 96-Well Plate-Based MICROFASP Method for Processing Low Microgram Proteomics Sample within 1.5 h., Anal Chem, PMID 39851180
PXD053295 (from PRIDE)Dataset title: Possible reference: Hoffman, NJ. et al. (2025) Phosphoproteomics Uncovers Exercise Intensity-Specific Skeletal Muscle Signaling Networks Underlying High-Intensity Interval Training in Healthy Male Participants., Sports Med, PMID 40257739
PXD053244 (from PRIDE)Dataset title: Possible reference: Akhlaq, R. et al. (2025) PX-12 modulates vorinostat-induced acetylation and methylation marks in CAL 27 cells., Epigenomics, PMID 39716806
PXD053169 (from PRIDE)Dataset title: Possible reference: Kolokotronis, T. et al. (2024) Differential miRNA and Protein Expression Reveals miR-1285, Its Targets TGM2 and CDH-1, as Well as CD166 and S100A13 as Potential New Biomarkers in Patients with Diabetes Mellitus and Pancreatic Adenocarcinoma., Cancers (Basel), PMID 39123454
PXD053070 (from PRIDE)Dataset title: Possible reference: Gangfuß, A. et al. (2024) Giant axonal neuropathy (GAN): cross-sectional data on phenotypes, genotypes, and proteomic signature from a German cohort., J Neurol, PMID 39680150
PXD053035 (from PRIDE)Dataset title: Possible reference: Seidel, JD. et al. (2025) Development of an Optimized LC-MS Workflow for Host Cell Protein Characterization to Support Upstream Process Development., J Proteome Res, PMID 39701585
PXD052665 (from PRIDE)Dataset title: Possible reference: Torres-Sánchez, E. et al. (2024) Proteomic Analysis of the Major Alkali-Soluble Inca Peanut (Plukenetia volubilis) Proteins., Foods, PMID 39456337
PXD052313 (from PRIDE)Dataset title: Possible reference: Sanner, A. et al. (2024) Data-Independent Acquisition-Parallel Reaction Monitoring Acquisition Reveals Age-Dependent Alterations of the Lysosomal Proteome in a Mouse Model of Metachromatic Leukodystrophy., Anal Chem, PMID 39620638
PXD051674 (from PRIDE)Dataset title: Possible reference: Goring, AK. et al. (2025) The Exoproteome and Surfaceome of Toxigenic Corynebacterium diphtheriae 1737 and Its Response to Iron Restriction and Growth on Human Hemoglobin., J Proteome Res, PMID 39692319
PXD051468 (from iProX)Dataset title: Possible reference: Weng, L. et al. (2024) Picoliter Single-Cell Reactor for Proteome Profiling by In Situ Cell Lysis, Protein Immobilization, Digestion, and Droplet Transfer., J Proteome Res, PMID 38833655
PXD051414 (from PRIDE)Dataset title: Possible reference: Ryan, EM. et al. (2024) Activity-Based Acylome Profiling with N-(Cyanomethyl)-N-(phenylsulfonyl)amides for Targeted Lysine Acylation and Post-Translational Control of Protein Function in Cells., J Am Chem Soc, PMID 39348182
PXD051367 (from MassIVE)Dataset title: Possible reference: Hussain, S. et al. (2024) Comparative Analysis of Plasma Protein Dynamics in Women with ST-Elevation Myocardial Infarction and Takotsubo Syndrome., Cells, PMID 39513871
PXD050598 (from PRIDE)Dataset title: Possible reference: Dimayacyac-Esleta, BRT. et al. (2025) Discovery of Key Candidate Protein Biomarkers in Early-Stage Nonsmall Cell Lung Carcinoma through Quantitative Proteomics., J Proteome Res, PMID 40014793
PXD050531 (from PRIDE)Dataset title: Possible reference: Liao, F. et al. (2024) Characterization of the Angiogenic and Proteomic Features of Circulating Exosomes in a Canine Mandibular Model of Distraction Osteogenesis., J Proteome Res, PMID 39417529
PXD050473 (from PRIDE)Dataset title: Possible reference: Tretiak, S. et al. (2025) Blood proteome profiling for biomarker discovery in broilers with necrotic enteritis., Sci Rep, PMID 40234672
PXD050461 (from PRIDE)Dataset title: Possible reference: Tretiak, S. et al. (2025) Blood proteome profiling for biomarker discovery in broilers with necrotic enteritis., Sci Rep, PMID 40234672
PXD049334 (from PRIDE)Dataset title: Possible reference: Sierzega, M. et al. (2024) Dissecting the importance and origin of circulating myokines in gastric cancer cachexia., Front Endocrinol (Lausanne), PMID 39411315
PXD049248 (from PRIDE)Dataset title: Possible reference: Xie, X. et al. (2024) Multicolumn Nanoflow Liquid Chromatography with Accelerated Offline Gradient Generation for Robust and Sensitive Single-Cell Proteome Profiling., Anal Chem, PMID 38915247
PXD047652 (from PRIDE)Dataset title: Possible reference: Parsons, VA. et al. (2025) TBC1D30 regulates proinsulin and insulin secretion and is the target of a genomic association signal for proinsulin., Diabetologia, PMID 40064677
PXD045901 (from PRIDE)Dataset title: Possible reference: Aghila Rani, KG. et al. (2025) Medwakh smoking induces alterations in salivary proteins and cytokine expression: a clinical exploratory proteomics investigation., Clin Proteomics, PMID 39819313
PXD044896 (from iProX)Dataset title: Possible reference: Chang, Q. et al. (2024) Comprehensive Urinary Proteome Profiling Analysis Identifies Diagnosis and Relapse Surveillance Biomarkers for Bladder Cancer., J Proteome Res, PMID 38787199
PXD044178 (from PRIDE)Dataset title: Possible reference: Yue, T. et al. (2024) Deep Crotonylproteomics Analysis of High-Altitude Exposure Hearts in Mice., ACS Omega, PMID 39619542
PXD043800 (from MassIVE)Dataset title: Possible reference: Abad, P. et al. (2024) Shotgun Characterization of the Circulating IgM Antigenome of an Infectious Pathogen by Immunocapture-LC-MS/MS from Dried Serum Spots., J Proteome Res, PMID 38183416
PXD041422 (from PRIDE)Dataset title: Possible reference: Paula, GM. et al. (2024) Profiling the neuroproteomics of honeybee brain: A clue for understanding the role of neuropeptides in the modulation of aggressivity., J Proteomics, PMID 38246419
PXD041026 (from MassIVE)Dataset title: Possible reference: Helbing, DL. et al. (2023) Proteomic analysis of peripheral nerve myelin during murine aging., Front Cell Neurosci, PMID 37964793
PXD040368 (from iProX)Dataset title: Possible reference: Gong, Z. et al. (2023) Label-free quantitative detection and comparative analysis of lysine acetylation during the different life stages of Eimeria tenella., J Proteome Res, PMID 37562054
PXD038173 (from iProX)Dataset title: Possible reference: Xiao, D. et al. (2023) Protein Biomarkers for the Identification of Forensically Relevant Human Hair from Different Body Parts in Intimate Contact Cases., J Proteome Res, PMID 37314855
PXD037274 (from PRIDE)Dataset title: Possible reference: Wong, TL. et al. (2023) Glycoproteomic Analyses of Influenza A Viruses Using timsTOF Pro MS., J Proteome Res, PMID 36480915
PXD034407 (from PanoramaPublic)Dataset title: Possible reference: Husain, AA. et al. (2023) Development of multiple reaction monitoring (MRM) assays to identify Brucella abortus proteins in the serum of humans and livestock., Proteomics Clin Appl, PMID 35925648
PXD029768 (from PRIDE)Dataset title: Possible reference: Mirza, MR. et al. (2022) Label-free quantitation of the changes in salivary proteome associated with the chronic consumption of the betel nut (Areca catechu)., Mol Omics, PMID 34851339
PXD021573 (from MassIVE)Dataset title: Possible reference: Na, K. et al. (2020) Potential Regulatory Role of Human-Carboxylesterase-1 Glycosylation in Liver Cancer Cell Growth., J Proteome Res, PMID 33206527
PXD012244 (from PRIDE)Dataset title: Possible reference: Mulcahy, MJ. et al. (2020) Brain Region-Specific nAChR and Associated Protein Abundance Alterations Following Chronic Nicotine and/or Menthol Exposure., J Proteome Res, PMID 31657575
PXD005997 (from PRIDE)Dataset title: Possible reference: Díez, P. et al. (2025) Tonic signaling of the B-cell antigen-specific receptor is a common functional hallmark in chronic lymphocytic leukemia cell phosphoproteomes at early disease stages., Mol Oncol, PMID 40129242
Announced datasets with no listed publication but with a title that brings up a hit in PubMed
RPXD056882 no publication (from jPOST)Dataset title: An Optimized Shotgun Strategy for the Rapid Generation of Comprehensive Human Proteomes [Reanalysis: PXD004452]Possible reference: Bekker-Jensen, DB. et al. (2017) An Optimized Shotgun Strategy for the Rapid Generation of Comprehensive Human Proteomes., Cell Syst, PMID 28601559
RPXD055697 no publication (from jPOST)Dataset title: Plasminogen deficiency exacerbates skeletal muscle loss during mechanical unloading in developing mice [Reanalysis: JPST002136]Possible reference: Ohira, T. et al. (2024) Plasminogen deficiency exacerbates skeletal muscle loss during mechanical unloading in developing mice., J Appl Physiol (1985), PMID 38328826
RPXD055696 no publication (from jPOST)Dataset title: Plasminogen deficiency exacerbates skeletal muscle loss during mechanical unloading in developing mice [Reanalysis: JPST002136]Possible reference: Ohira, T. et al. (2024) Plasminogen deficiency exacerbates skeletal muscle loss during mechanical unloading in developing mice., J Appl Physiol (1985), PMID 38328826
RPXD055695 no publication (from jPOST)Dataset title: Plasminogen deficiency exacerbates skeletal muscle loss during mechanical unloading in developing mice [Reanalysis: JPST002136]Possible reference: Ohira, T. et al. (2024) Plasminogen deficiency exacerbates skeletal muscle loss during mechanical unloading in developing mice., J Appl Physiol (1985), PMID 38328826
RPXD055694 no publication (from jPOST)Dataset title: Plasminogen deficiency exacerbates skeletal muscle loss during mechanical unloading in developing mice [Reanalysis: JPST002136]Possible reference: Ohira, T. et al. (2024) Plasminogen deficiency exacerbates skeletal muscle loss during mechanical unloading in developing mice., J Appl Physiol (1985), PMID 38328826
RPXD055693 no publication (from jPOST)Dataset title: Plasminogen deficiency exacerbates skeletal muscle loss during mechanical unloading in developing mice [Reanalysis: JPST002136]Possible reference: Ohira, T. et al. (2024) Plasminogen deficiency exacerbates skeletal muscle loss during mechanical unloading in developing mice., J Appl Physiol (1985), PMID 38328826
RPXD055692 no publication (from jPOST)Dataset title: Plasminogen deficiency exacerbates skeletal muscle loss during mechanical unloading in developing mice [Reanalysis: JPST002136]Possible reference: Ohira, T. et al. (2024) Plasminogen deficiency exacerbates skeletal muscle loss during mechanical unloading in developing mice., J Appl Physiol (1985), PMID 38328826
RPXD055691 no publication (from jPOST)Dataset title: Plasminogen deficiency exacerbates skeletal muscle loss during mechanical unloading in developing mice [Reanalysis: JPST002136]Possible reference: Ohira, T. et al. (2024) Plasminogen deficiency exacerbates skeletal muscle loss during mechanical unloading in developing mice., J Appl Physiol (1985), PMID 38328826
RPXD055690 no publication (from jPOST)Dataset title: Plasminogen deficiency exacerbates skeletal muscle loss during mechanical unloading in developing mice [Reanalysis: JPST002136]Possible reference: Ohira, T. et al. (2024) Plasminogen deficiency exacerbates skeletal muscle loss during mechanical unloading in developing mice., J Appl Physiol (1985), PMID 38328826
RPXD055685 no publication (from jPOST)Dataset title: Identification of gravity-responsive proteins in mouse soleus muscle using proteomic analysis [Reanalysis: JPST002107]Possible reference: Kimura, Y. et al. (2024) Identification of gravity-responsive serum proteins in spaceflight mice using a quantitative proteomic approach with data-independent acquisition mass spectrometry., Proteomics, PMID 38475964
RPXD055684 no publication (from jPOST)Dataset title: Identification of gravity-responsive proteins in mouse soleus muscle using proteomic analysis [Reanalysis: JPST002107]Possible reference: Kimura, Y. et al. (2024) Identification of gravity-responsive serum proteins in spaceflight mice using a quantitative proteomic approach with data-independent acquisition mass spectrometry., Proteomics, PMID 38475964
RPXD055683 no publication (from jPOST)Dataset title: Identification of gravity-responsive proteins in mouse soleus muscle using proteomic analysis [Reanalysis: JPST002107]Possible reference: Kimura, Y. et al. (2024) Identification of gravity-responsive serum proteins in spaceflight mice using a quantitative proteomic approach with data-independent acquisition mass spectrometry., Proteomics, PMID 38475964
RPXD055682 no publication (from jPOST)Dataset title: Identification of gravity-responsive proteins in mouse soleus muscle using proteomic analysis [Reanalysis: JPST002107]Possible reference: Kimura, Y. et al. (2024) Identification of gravity-responsive serum proteins in spaceflight mice using a quantitative proteomic approach with data-independent acquisition mass spectrometry., Proteomics, PMID 38475964
RPXD055681 no publication (from jPOST)Dataset title: Identification of gravity-responsive proteins in mouse soleus muscle using proteomic analysis [Reanalysis: JPST002107]Possible reference: Kimura, Y. et al. (2024) Identification of gravity-responsive serum proteins in spaceflight mice using a quantitative proteomic approach with data-independent acquisition mass spectrometry., Proteomics, PMID 38475964
RPXD055680 no publication (from jPOST)Dataset title: Identification of gravity-responsive proteins in mouse soleus muscle using proteomic analysis [Reanalysis: JPST002107]Possible reference: Kimura, Y. et al. (2024) Identification of gravity-responsive serum proteins in spaceflight mice using a quantitative proteomic approach with data-independent acquisition mass spectrometry., Proteomics, PMID 38475964
RPXD055679 no publication (from jPOST)Dataset title: Identification of gravity-responsive proteins in mouse soleus muscle using proteomic analysis [Reanalysis: JPST002107]Possible reference: Kimura, Y. et al. (2024) Identification of gravity-responsive serum proteins in spaceflight mice using a quantitative proteomic approach with data-independent acquisition mass spectrometry., Proteomics, PMID 38475964
RPXD055678 no publication (from jPOST)Dataset title: Identification of gravity-responsive proteins in mouse soleus muscle using proteomic analysis [Reanalysis: JPST002107]Possible reference: Kimura, Y. et al. (2024) Identification of gravity-responsive serum proteins in spaceflight mice using a quantitative proteomic approach with data-independent acquisition mass spectrometry., Proteomics, PMID 38475964
RPXD055677 no publication (from jPOST)Dataset title: Identification of gravity-responsive proteins in mouse soleus muscle using proteomic analysis [Reanalysis: JPST002107]Possible reference: Kimura, Y. et al. (2024) Identification of gravity-responsive serum proteins in spaceflight mice using a quantitative proteomic approach with data-independent acquisition mass spectrometry., Proteomics, PMID 38475964
RPXD055676 no publication (from jPOST)Dataset title: Identification of gravity-responsive proteins in mouse soleus muscle using proteomic analysis [Reanalysis: JPST002107]Possible reference: Kimura, Y. et al. (2024) Identification of gravity-responsive serum proteins in spaceflight mice using a quantitative proteomic approach with data-independent acquisition mass spectrometry., Proteomics, PMID 38475964
RPXD055675 no publication (from jPOST)Dataset title: Identification of gravity-responsive proteins in mouse soleus muscle using proteomic analysis [Reanalysis: JPST002107]Possible reference: Kimura, Y. et al. (2024) Identification of gravity-responsive serum proteins in spaceflight mice using a quantitative proteomic approach with data-independent acquisition mass spectrometry., Proteomics, PMID 38475964
RPXD055674 no publication (from jPOST)Dataset title: Identification of gravity-responsive proteins in mouse soleus muscle using proteomic analysis [Reanalysis: JPST002107]Possible reference: Kimura, Y. et al. (2024) Identification of gravity-responsive serum proteins in spaceflight mice using a quantitative proteomic approach with data-independent acquisition mass spectrometry., Proteomics, PMID 38475964
RPXD034764 no publication (from jPOST)Dataset title: JPST000090-2 Extended Coverage of Singly and Multiply Phosphorylated Peptides from a Single Titanium Dioxide Microcolumn [Reanalysis: JPST000090]Possible reference: Wakabayashi, M. et al. (2015) Extended Coverage of Singly and Multiply Phosphorylated Peptides from a Single Titanium Dioxide Microcolumn., Anal Chem, PMID 26402220
RPXD034763 no publication (from jPOST)Dataset title: JPST000090-1 Extended Coverage of Singly and Multiply Phosphorylated Peptides from a Single Titanium Dioxide Microcolumn [Reanalysis: JPST000090]Possible reference: Wakabayashi, M. et al. (2015) Extended Coverage of Singly and Multiply Phosphorylated Peptides from a Single Titanium Dioxide Microcolumn., Anal Chem, PMID 26402220
RPXD034759 no publication (from jPOST)Dataset title: JPST000589-9 Mass Spectrometry-compatible Subcellular Fractionation [Reanalysis: JPST000589]Possible reference: Grote, E. et al. (2013) Using pure protein to build a multiple reaction monitoring mass spectrometry assay for targeted detection and quantitation., Methods Mol Biol, PMID 23606259
RPXD034758 no publication (from jPOST)Dataset title: JPST000589-6 Mass Spectrometry-compatible Subcellular Fractionation [Reanalysis: JPST000589]Possible reference: Grote, E. et al. (2013) Using pure protein to build a multiple reaction monitoring mass spectrometry assay for targeted detection and quantitation., Methods Mol Biol, PMID 23606259
RPXD034757 no publication (from jPOST)Dataset title: JPST000589-3 Mass Spectrometry-compatible Subcellular Fractionation [Reanalysis: JPST000589]Possible reference: Grote, E. et al. (2013) Using pure protein to build a multiple reaction monitoring mass spectrometry assay for targeted detection and quantitation., Methods Mol Biol, PMID 23606259
RPXD034734 no publication (from jPOST)Dataset title: JPST000129-2 Stagetip fractionation for Phosphoproteome [Reanalysis: JPST000129]Possible reference: Nakagami, H. et al. (2014) StageTip-based HAMMOC, an efficient and inexpensive phosphopeptide enrichment method for plant shotgun phosphoproteomics., Methods Mol Biol, PMID 24136549
RPXD034733 no publication (from jPOST)Dataset title: JPST000129-1 Stagetip fractionation for Phosphoproteome [Reanalysis: JPST000129]Possible reference: Nakagami, H. et al. (2014) StageTip-based HAMMOC, an efficient and inexpensive phosphopeptide enrichment method for plant shotgun phosphoproteomics., Methods Mol Biol, PMID 24136549
RPXD034726 no publication (from jPOST)Dataset title: JPST000096-4 Beige adipocyte phosphoproteomics [Reanalysis: JPST000096]Possible reference: Shinoda, K. et al. (2015) Phosphoproteomics Identifies CK2 as a Negative Regulator of Beige Adipocyte Thermogenesis and Energy Expenditure., Cell Metab, PMID 26525534
RPXD034725 no publication (from jPOST)Dataset title: JPST000096-3 Beige adipocyte phosphoproteomics [Reanalysis: JPST000096]Possible reference: Shinoda, K. et al. (2015) Phosphoproteomics Identifies CK2 as a Negative Regulator of Beige Adipocyte Thermogenesis and Energy Expenditure., Cell Metab, PMID 26525534
RPXD034724 no publication (from jPOST)Dataset title: JPST000096-2 Beige adipocyte phosphoproteomics [Reanalysis: JPST000096]Possible reference: Shinoda, K. et al. (2015) Phosphoproteomics Identifies CK2 as a Negative Regulator of Beige Adipocyte Thermogenesis and Energy Expenditure., Cell Metab, PMID 26525534
RPXD034723 no publication (from jPOST)Dataset title: JPST000096-1 Beige adipocyte phosphoproteomics [Reanalysis: JPST000096]Possible reference: Shinoda, K. et al. (2015) Phosphoproteomics Identifies CK2 as a Negative Regulator of Beige Adipocyte Thermogenesis and Energy Expenditure., Cell Metab, PMID 26525534
RPXD034696 no publication (from jPOST)Dataset title: PXD018357-2 Inhibition of growth factor signaling prevents SARS-CoV-2 replication [Reanalysis: PXD018357]Possible reference: Anderson, G. et al. (2020) Melatonin: Roles in influenza, Covid-19, and other viral infections., Rev Med Virol, PMID 32314850
RPXD034692 no publication (from jPOST)Dataset title: PXD019423-1 MS analysis of SARS-CoV2 proteins from patient samples [Reanalysis: PXD019423]Possible reference: Iles, RK. et al. (2022) Direct Detection of Glycated Human Serum Albumin and Hyperglycosylated IgG3 in Serum, by MALDI-ToF Mass Spectrometry, as a Predictor of COVID-19 Severity., Diagnostics (Basel), PMID 36292212
RPXD034691 no publication (from jPOST)Dataset title: PXD019645-7 Data, reagents, assays and merits of proteomics for SARS-CoV-2 research and testing [Reanalysis: PXD019645]Possible reference: Zecha, J. et al. (2020) Data, Reagents, Assays and Merits of Proteomics for SARS-CoV-2 Research and Testing., Mol Cell Proteomics, PMID 32591346
RPXD034690 no publication (from jPOST)Dataset title: PXD019645-6 Data, reagents, assays and merits of proteomics for SARS-CoV-2 research and testing [Reanalysis: PXD019645]Possible reference: Zecha, J. et al. (2020) Data, Reagents, Assays and Merits of Proteomics for SARS-CoV-2 Research and Testing., Mol Cell Proteomics, PMID 32591346
RPXD034689 no publication (from jPOST)Dataset title: PXD019645-5 Data, reagents, assays and merits of proteomics for SARS-CoV-2 research and testing [Reanalysis: PXD019645]Possible reference: Zecha, J. et al. (2020) Data, Reagents, Assays and Merits of Proteomics for SARS-CoV-2 Research and Testing., Mol Cell Proteomics, PMID 32591346
RPXD034688 no publication (from jPOST)Dataset title: PXD019645-4 Data, reagents, assays and merits of proteomics for SARS-CoV-2 research and testing [Reanalysis: PXD019645]Possible reference: Zecha, J. et al. (2020) Data, Reagents, Assays and Merits of Proteomics for SARS-CoV-2 Research and Testing., Mol Cell Proteomics, PMID 32591346
RPXD034687 no publication (from jPOST)Dataset title: PXD019645-3 Data, reagents, assays and merits of proteomics for SARS-CoV-2 research and testing [Reanalysis: PXD019645]Possible reference: Zecha, J. et al. (2020) Data, Reagents, Assays and Merits of Proteomics for SARS-CoV-2 Research and Testing., Mol Cell Proteomics, PMID 32591346
RPXD034686 no publication (from jPOST)Dataset title: PXD019645-2 Data, reagents, assays and merits of proteomics for SARS-CoV-2 research and testing [Reanalysis: PXD019645]Possible reference: Zecha, J. et al. (2020) Data, Reagents, Assays and Merits of Proteomics for SARS-CoV-2 Research and Testing., Mol Cell Proteomics, PMID 32591346
RPXD034685 no publication (from jPOST)Dataset title: PXD019645-1 Data, reagents, assays and merits of proteomics for SARS-CoV-2 research and testing [Reanalysis: PXD019645]Possible reference: Zecha, J. et al. (2020) Data, Reagents, Assays and Merits of Proteomics for SARS-CoV-2 Research and Testing., Mol Cell Proteomics, PMID 32591346
RPXD034684 no publication (from jPOST)Dataset title: PXD019113-2 The Global Phosphorylation Landscape of SARS-CoV-2 Infection [Reanalysis: PXD019113]Possible reference: Bouhaddou, M. et al. (2020) The Global Phosphorylation Landscape of SARS-CoV-2 Infection., Cell, PMID 32645325
RPXD034683 no publication (from jPOST)Dataset title: PXD019113-1 The Global Phosphorylation Landscape of SARS-CoV-2 Infection [Reanalysis: PXD019113]Possible reference: Bouhaddou, M. et al. (2020) The Global Phosphorylation Landscape of SARS-CoV-2 Infection., Cell, PMID 32645325
RPXD034671 no publication (from jPOST)Dataset title: JPST000589-10 Mass Spectrometry-compatible Subcellular Fractionation [Reanalysis: JPST000589]Possible reference: Grote, E. et al. (2013) Using pure protein to build a multiple reaction monitoring mass spectrometry assay for targeted detection and quantitation., Methods Mol Biol, PMID 23606259
RPXD034670 no publication (from jPOST)Dataset title: JPST000589-8 Mass Spectrometry-compatible Subcellular Fractionation [Reanalysis: JPST000589]Possible reference: Grote, E. et al. (2013) Using pure protein to build a multiple reaction monitoring mass spectrometry assay for targeted detection and quantitation., Methods Mol Biol, PMID 23606259
RPXD034669 no publication (from jPOST)Dataset title: JPST000589-7 Mass Spectrometry-compatible Subcellular Fractionation [Reanalysis: JPST000589]Possible reference: Grote, E. et al. (2013) Using pure protein to build a multiple reaction monitoring mass spectrometry assay for targeted detection and quantitation., Methods Mol Biol, PMID 23606259
RPXD034668 no publication (from jPOST)Dataset title: JPST000589-5 Mass Spectrometry-compatible Subcellular Fractionation [Reanalysis: JPST000589]Possible reference: Grote, E. et al. (2013) Using pure protein to build a multiple reaction monitoring mass spectrometry assay for targeted detection and quantitation., Methods Mol Biol, PMID 23606259
RPXD034667 no publication (from jPOST)Dataset title: JPST000589-4 Mass Spectrometry-compatible Subcellular Fractionation [Reanalysis: JPST000589]Possible reference: Grote, E. et al. (2013) Using pure protein to build a multiple reaction monitoring mass spectrometry assay for targeted detection and quantitation., Methods Mol Biol, PMID 23606259
RPXD034666 no publication (from jPOST)Dataset title: JPST000589-2 Mass Spectrometry-compatible Subcellular Fractionation [Reanalysis: JPST000589]Possible reference: Grote, E. et al. (2013) Using pure protein to build a multiple reaction monitoring mass spectrometry assay for targeted detection and quantitation., Methods Mol Biol, PMID 23606259
RPXD034665 no publication (from jPOST)Dataset title: JPST000589-1 Mass Spectrometry-compatible Subcellular Fractionation [Reanalysis: JPST000589]Possible reference: Grote, E. et al. (2013) Using pure protein to build a multiple reaction monitoring mass spectrometry assay for targeted detection and quantitation., Methods Mol Biol, PMID 23606259
RPXD034664 no publication (from jPOST)Dataset title: JPST000115-1 Identification of ubiquitylation sites by K0-Ub [Reanalysis: JPST000115]Possible reference: Oshikawa, K. et al. (2012) Proteome-wide identification of ubiquitylation sites by conjugation of engineered lysine-less ubiquitin., J Proteome Res, PMID 22053931
RPXD034321 no publication (from jPOST)Dataset title: JPST000362 HeLa, Orbitrap Fusion Lumos, Parameter optimization [Reanalysis: JPST000362]Possible reference: Greguš, M. et al. (2024) Improved Data Acquisition Settings on Q Exactive HF-X and Fusion Lumos Tribrid Orbitrap-Based Mass Spectrometers for Proteomic Analysis of Limited Samples., J Proteome Res, PMID 38690845
RPXD034291 no publication (from jPOST)Dataset title: JPST000123-5 ATPome-wide selectivity profiling of (s)-crizotinib [Reanalysis: JPST000123]Possible reference: Huber, KV. et al. (2014) Stereospecific targeting of MTH1 by (S)-crizotinib as an anticancer strategy., Nature, PMID 24695225
RPXD034290 no publication (from jPOST)Dataset title: JPST000123-4 ATPome-wide selectivity profiling of (s)-crizotinib [Reanalysis: JPST000123]Possible reference: Huber, KV. et al. (2014) Stereospecific targeting of MTH1 by (S)-crizotinib as an anticancer strategy., Nature, PMID 24695225
RPXD034289 no publication (from jPOST)Dataset title: JPST000123-3 ATPome-wide selectivity profiling of (s)-crizotinib [Reanalysis: JPST000123]Possible reference: Huber, KV. et al. (2014) Stereospecific targeting of MTH1 by (S)-crizotinib as an anticancer strategy., Nature, PMID 24695225
RPXD034288 no publication (from jPOST)Dataset title: JPST000123-2 ATPome-wide selectivity profiling of (s)-crizotinib [Reanalysis: JPST000123]Possible reference: Huber, KV. et al. (2014) Stereospecific targeting of MTH1 by (S)-crizotinib as an anticancer strategy., Nature, PMID 24695225
RPXD034287 no publication (from jPOST)Dataset title: JPST000123-1 ATPome-wide selectivity profiling of (s)-crizotinib [Reanalysis: JPST000123]Possible reference: Huber, KV. et al. (2014) Stereospecific targeting of MTH1 by (S)-crizotinib as an anticancer strategy., Nature, PMID 24695225
PXD063265 Dataset with its publication pending (from iProX)Dataset title: Comprehensive Serum Proteomic and Metabolomic Profiles of Pediatric Patients with Moyamoya Disease Reveal Core PathwaysPossible reference: Guo, Q. et al. (2024) Comprehensive Serum Proteomic and Metabolomic Profiles of Pediatric Patients with Moyamoya Disease Reveal Core Pathways., J Inflamm Res, PMID 39281778
PXD062870 Dataset with its publication pending (from PRIDE)Dataset title: Directed evolution of the multicopper oxidase laccase for cell surface proximity labeling and electron microscopyPossible reference: Lee, SY. et al. (2024) Directed evolution of the multicopper oxidase laccase for cell surface proximity labeling and electron microscopy., bioRxiv, PMID 39554088
PXD062795 Dataset with its publication pending (from iProX)Dataset title: Protein regulation mechanism of Haemaphysalis longicornis in response to high temperaturePossible reference: Wang, H. et al. (2025) Aquaporins modulate the cold response of Haemaphysalis longicornis via changes in gene and protein expression of fatty acids., Parasit Vectors, PMID 39994701
PXD062672 Dataset with its publication pending (from iProX)Dataset title: Proteomic analysis of human lung cancer and paracancer tissuesPossible reference: Wu, Y. et al. (2023) [Role of Eukaryotic Translation Elongation Factor 1 Family Members in the Tumorigenesis and Progression of Lung Adenocarcinoma]., Zhongguo Yi Xue Ke Xue Yuan Xue Bao, PMID 38173097
PXD062467 no publication (from MassIVE)Dataset title: H3.1K27M-induced misregulation of the TSK/TONSL-H3.1 pathway causes genomic instabilityPossible reference: Yuan, W. et al. (2024) H3.1K27M-induced misregulation of the TSK/TONSL-H3.1 pathway causes genomic instability., bioRxiv, PMID 39713323
PXD062347 Dataset with its publication pending (from PRIDE)Dataset title: Deceptive Ceropegia sandersonii uses an arabinogalactan for trapping its fly pollinatorsPossible reference: Feichtlbauer, P. et al. (2025) Deceptive Ceropegia sandersonii uses an arabinogalactan for trapping its fly pollinators., New Phytol, PMID 40254894
PXD062240 Dataset with its publication pending (from iProX)Dataset title: The changes in the colon proteomics of mice with ulcerative colitis induced by DSSPossible reference: Dong, F. et al. (2013) Systemic responses of mice to dextran sulfate sodium-induced acute ulcerative colitis using 1H NMR spectroscopy., J Proteome Res, PMID 23651354
PXD062053 Dataset with its publication pending (from PRIDE)Dataset title: ¬Multi-omics identification of extracellular components of the fetal monkey and human neocortexPossible reference: Vilicich, F. et al. (2024) Multi-omics identification of extracellular components of the fetal monkey and human neocortex., bioRxiv, PMID 39386730
PXD061975 no publication (from MassIVE)Dataset title: Pilocarpine inhibits Candida albicans biofilm maturation by altering lipid, sphingolipid, and protein contentPossible reference: Ottaviano, E. et al. (2025) Pilocarpine inhibits Candida albicans SC5314 biofilm maturation by altering lipid, sphingolipid, and protein content., Microbiol Spectr, PMID 40111054
PXD061960 Dataset with its publication pending (from iProX)Dataset title: Nongxiangx daqu during storage periodPossible reference: Hou, X. et al. (2022) Comparative analysis of the microbiotas and physicochemical properties inside and outside medium-temperature Daqu during the fermentation and storage., Front Microbiol, PMID 35966713
PXD061958 Dataset with its publication pending (from iProX)Dataset title: Proteomic Profiling of Donkey Milk Exosomes Highlights Bioactive Proteins with Immune-Related FunctionsPossible reference: Liu, Y. et al. (2025) Proteomic Profiling of Donkey Milk Exosomes Highlights Bioactive Proteins with Immune-Related Functions., Int J Mol Sci, PMID 40243471
PXD061833 Dataset with its publication pending (from iProX)Dataset title: Proteomic analysis of Lactobacillus plantarum and its extracellular vesiclesPossible reference: Bajic, SS. et al. (2020) Proteomic profile of extracellular vesicles released by Lactiplantibacillus plantarum BGAN8 and their internalization by non-polarized HT29 cell line., Sci Rep, PMID 33311536
PXD061819 Dataset with its publication pending (from iProX)Dataset title: Integrated Multi-Omics Landscape of non-small cell lung cancer with distant metastasisPossible reference: He, T. et al. (2025) Integrated multi-omics landscape of non-small cell lung cancer with distant metastasis., Front Immunol, PMID 40165954
PXD061816 Dataset with its publication pending (from iProX)Dataset title: Development of a Multiple Reaction Monitoring (MRM)-Based LC-MS/MS Method for the Quantification of Post-Translational Modifications on Histone H3 Variants in Arabidopsis thalianaPossible reference: Hu, Y. et al. (2025) Development of a multiple reaction monitoring (MRM)-based LC-MS/MS method for the quantification of post-translational modifications on histone H3 variants in Arabidopsis thaliana., Analyst, PMID 40130344
PXD061815 Dataset with its publication pending (from iProX)Dataset title: Midkine promotes lung cancer brain metastasisPossible reference: Shin, DH. et al. (2020) Midkine Is a Potential Therapeutic Target of Tumorigenesis, Angiogenesis, and Metastasis in Non-Small Cell Lung Cancer., Cancers (Basel), PMID 32847073
PXD061792 no publication (from MassIVE)Dataset title: Proteome analysis of Corynebacterium diphtheriae - macrophage interactionPossible reference: Musella, L. et al. (2025) Proteome Analysis of Corynebacterium diphtheriae-Macrophage Interaction., Proteomics, PMID 40211577
PXD061782 Dataset with its publication pending (from iProX)Dataset title: Exosome-transmitted HSPA9 facilitates bortezomib signaling in multiple myelomaPossible reference: Shi, M. et al. (2025) Exosome-transmitted HSPA9 facilitates bortezomib resistance by targeting TRIP13/USP1 signaling in multiple myeloma., Cell Commun Signal, PMID 40140922
PXD061732 Dataset with its publication pending (from iProX)Dataset title: Glucosidase Alpha Neutral C Promotes Influenza Virus Replication by Inhibiting Proteosome-Dependent Degradation of HemagglutininPossible reference: Liao, X. et al. (2025) Glucosidase alpha neutral C promotes influenza virus replication by inhibiting proteosome-dependent degradation of hemagglutinin., Signal Transduct Target Ther, PMID 40263249
PXD061713 no publication (from MassIVE)Dataset title: Glycosylation of serine/threonine-rich intrinsically disordered regions of membrane-associated proteins in streptococci Possible reference: Rahman, MM. et al. (2025) Glycosylation of serine/threonine-rich intrinsically disordered regions of membrane-associated proteins in streptococci., bioRxiv, PMID 38746434
PXD061654 Dataset with its publication pending (from PRIDE)Dataset title: The mammalian longevity associated acetylomePossible reference: Feldman-Trabelsi, S. et al. (2025) The mammalian longevity associated acetylome., Nat Commun, PMID 40263264
PXD061598 Dataset with its publication pending (from PRIDE)Dataset title: PP1/PNUTS phosphatase binds the restrictor complex and stimulates RNA pol II transcription terminationPossible reference: Erickson, B. et al. (2025) PP1/PNUTS phosphatase binds the restrictor complex and stimulates RNA Pol II transcription termination., Cell Rep, PMID 40244850
PXD061581 Dataset with its publication pending (from PRIDE)Dataset title: Conserved role of the SERK‒BIR module in development and immunity across land plantsPossible reference: Yan, Y. et al. (2025) Conserved role of the SERK-BIR module in development and immunity across land plants., Curr Biol, PMID 40250435
PXD061555 no publication (from MassIVE)Dataset title: Cell therapy mesenchymal stem cell secretome for cardioprotection Possible reference: Xu, M. et al. (2012) Role of GATA-4 in differentiation and survival of bone marrow mesenchymal stem cells., Prog Mol Biol Transl Sci, PMID 22917233
PXD061517 Dataset with its publication pending (from iProX)Dataset title: co-culture between Geobacter metallireducens and Methanosarcina barkeriPossible reference: Chen, S. et al. (2014) Promoting interspecies electron transfer with biochar., Sci Rep, PMID 24846283
PXD061514 Dataset with its publication pending (from PRIDE)Dataset title: Analysis of posttranslational modifications in the Vesicular Glutamate Transporter 2 (Slc17a6)Possible reference: Zhang, CR. et al. (2015) Prenatal ethanol exposure alters adult hippocampal VGLUT2 expression with concomitant changes in promoter DNA methylation, H3K4 trimethylation and miR-467b-5p levels., Epigenetics Chromatin, PMID 26421062
PXD061483 Dataset with its publication pending (from iProX)Dataset title: Selective identification of epigenetic regulators at methylated genomic sites by SelectIDPossible reference: Qian, W. et al. (2025) Selective identification of epigenetic regulators at methylated genomic sites by SelectID., Nat Commun, PMID 40251151
PXD061422 Dataset with its publication pending (from iProX)Dataset title: Post-translational modifications orchestrate the intrinsic signaling bias of orphan receptor GPR52Possible reference: Zhang, B. et al. (2025) Post-translational modifications orchestrate the intrinsic signaling bias of GPR52., Nat Chem Biol, PMID 40087539
PXD061358 Dataset with its publication pending (from PRIDE)Dataset title: Structural Basis for Psilocybin BiosynthesisPossible reference: Fricke, J. et al. (2017) Enzymatic Synthesis of Psilocybin., Angew Chem Int Ed Engl, PMID 28763571
PXD061265 Dataset with its publication pending (from PRIDE)Dataset title: ATR promotes mTORC1 activity via de novo cholesterol synthesisPossible reference: Tangudu, NK. et al. (2024) ATR promotes mTORC1 activity via de novo cholesterol synthesis., bioRxiv, PMID 37961201
PXD061240 Dataset with its publication pending (from iProX)Dataset title: Mucin proteomics of haliotis discus hannaiPossible reference: Di, G. et al. (2025) 4D-FastDIA proteomic analysis of pedal mucus in Pacific abalone Haliotis discus hannai heat-resistance group., Comp Biochem Physiol Part D Genomics Proteomics, PMID 40199049
PXD061113 Dataset with its publication pending (from iProX)Dataset title: Longitudinal multi-omics analysis of convalescent individuals with respiratory sequelae 6–36 months after COVID-19Possible reference: Yang, H. et al. (2025) Longitudinal multi-omics analysis of convalescent individuals with respiratory sequelae 6-36 months after COVID-19., BMC Med, PMID 40038650
PXD061099 no publication (from MassIVE)Dataset title: Native Top-Down Proteomics of Endogenous Protein Complexes Enabled by Online Two-Dimensional Liquid ChromatographyPossible reference: Fischer, MS. et al. (2025) Native Top-Down Proteomics of Endogenous Protein Complexes Enabled by Online Two-Dimensional Liquid Chromatography., bioRxiv, PMID 40236213
PXD060991 Dataset with its publication pending (from iProX)Dataset title: Proteomic study of hepatopancreas infected by EHP in Litopenaeus vannameiPossible reference: Ning, M. et al. (2019) Proteomic and metabolomic responses in hepatopancreas of whiteleg shrimp Litopenaeus vannamei infected by microsporidian Enterocytozoon hepatopenaei., Fish Shellfish Immunol, PMID 30721776
PXD060981 Dataset with its publication pending (from PRIDE)Dataset title: Mitochondrial NADPH fuels mitochondrial fatty acid synthesis and lipoylation to power oxidative metabolismPossible reference: Kim, D. et al. (2025) Mitochondrial NADPH fuels mitochondrial fatty acid synthesis and lipoylation to power oxidative metabolism., Nat Cell Biol, PMID 40258949
PXD060971 Dataset with its publication pending (from PRIDE)Dataset title: ANXA11 biomolecular condensates facilitate protein-lipid phase coupling on lysosomal membranesPossible reference: Nixon-Abell, J. et al. (2023) ANXA11 biomolecular condensates facilitate protein-lipid phase coupling on lysosomal membranes., bioRxiv, PMID 36993242
PXD060949 Dataset with its publication pending (from PRIDE)Dataset title: Protein disulfide isomerase is essential for osteoblast differentiation in micePossible reference: Wang, Y. et al. (2014) Impaired bone formation in Pdia3 deficient mice., PLoS One, PMID 25405762
PXD060905 Dataset with its publication pending (from iProX)Dataset title: The E3 ligase HRD1 enhances plant antiviral immunity by targeting viral movement proteinsPossible reference: Guo, ZH. et al. (2025) The E3 ligase HRD1 enhances plant antiviral immunity by targeting viral movement proteins., Cell Rep, PMID 40106437
PXD060835 no publication (from MassIVE)Dataset title: Analysis of a cancer-associated mutation in the budding yeast Nuf2 kinetochore proteinPossible reference: Andrade Latino, A. et al. (2025) Analysis of a cancer-associated mutation in the budding yeast Nuf2 kinetochore protein., MicroPubl Biol, PMID 40161439
PXD060593 Dataset with its publication pending (from iProX)Dataset title: Structural basis for the asymmetric binding of coactivator SRC1 to FXR-RXRα and allosteric communication within the complexPossible reference: Sheng, Y. et al. (2025) Structural basis for the asymmetric binding of coactivator SRC1 to FXR-RXRα and allosteric communication within the complex., Commun Biol, PMID 40082595
PXD060567 Dataset with its publication pending (from iProX)Dataset title: Pentraxin3 exacerbates acute pancreatitis injury by inhibiting oxidative phosphorylation pathwayPossible reference: Wang, W. et al. (2025) Pentraxin3 exacerbates acute pancreatitis injury by inhibiting oxidative phosphorylation pathway., Sci Rep, PMID 40011615
PXD060557 Dataset with its publication pending (from PRIDE)Dataset title: Ancient genomic linkage of alpha-globin and Nprl3 couples metabolism with erythropoiesisPossible reference: Preston, AE. et al. (2023) Ancient genomic linkage couples metabolism with erythroid development., bioRxiv, PMID 37808769
PXD060531 no publication (from MassIVE)Dataset title: Protein degradation and growth dependent dilution substantially shape mammalian proteomesPossible reference: Leduc, A. et al. (2025) Protein degradation and growth dependent dilution substantially shape mammalian proteomes., bioRxiv, PMID 39990504
PXD060496 Dataset with its publication pending (from iProX)Dataset title: Integrative analysis of Multi-omics data of FGFR inhibitorPossible reference: Nahas, LD. et al. (2024) Genomic insights and advanced machine learning: characterizing autism spectrum disorder biomarkers and genetic interactions., Metab Brain Dis, PMID 38153584
PXD060495 Dataset with its publication pending (from iProX)Dataset title: Proteome of human and mouse astrocytes and astrocyte-conditioned mediumPossible reference: Chaudhary, S. et al. (2024) Dissecting the MUC5AC/ANXA2 signaling axis: implications for brain metastasis in lung adenocarcinoma., Exp Mol Med, PMID 38825648
PXD060494 Dataset with its publication pending (from iProX)Dataset title: Urine complement analysis implies complement activation is involved in membranous nephropathyPossible reference: Xu, Y. et al. (2025) Urine complement analysis implies complement activation is involved in membranous nephropathy., Front Med (Lausanne), PMID 40018357
PXD060493 Dataset with its publication pending (from iProX)Dataset title: Tailoring an Intravenously Injectable Oncolytic Virus for Augmenting RadiotherapyPossible reference: Xu, C. et al. (2025) Tailoring an intravenously injectable oncolytic virus for augmenting radiotherapy., Cell Rep Med, PMID 40233744
PXD060425 Dataset with its publication pending (from PRIDE)Dataset title: Background proteome in ALS musclePossible reference: Le Gall, L. et al. (2022) Muscle cells of sporadic amyotrophic lateral sclerosis patients secrete neurotoxic vesicles., J Cachexia Sarcopenia Muscle, PMID 35194965
PXD060380 no publication (from MassIVE)Dataset title: VIPER-TACs leverage viral E3 ligases for disease-specific targeted protein degradationPossible reference: Mangano, K. et al. (2025) VIPER-TACs leverage viral E3 ligases for disease-specific targeted protein degradation., Cell Chem Biol, PMID 40049166
PXD060335 Dataset with its publication pending (from PRIDE)Dataset title: Critical Assessment of MetaProteome Investigation 2 (CAMPI-2)Possible reference: Zhou, F. et al. (2023) Comparative metaproteomics reveal co-contribution of onion maggot and its gut microbiota to phoxim resistance., Ecotoxicol Environ Saf, PMID 37913580
PXD060311 Dataset with its publication pending (from PRIDE)Dataset title: A boundary-defining protein facilitates megabase-scale regulatory chromosomal loop formation in Drosophila neuronsPossible reference: Mouginot, M. et al. (2025) A boundary-defining protein facilitates megabase-scale regulatory chromosomal loop formation in Drosophila neurons., Genes Dev, PMID 40240144
PXD060266 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic analysis reveals the alleviation of follicular development defects in offspring mice under DEHP exposure by melatoninPossible reference: Liu, JC. et al. (2025) Proteomic analysis reveals the alleviation of follicular development defects in offspring mice under DEHP exposure by melatonin., BMC Biol, PMID 40022026
PXD060242 Dataset with its publication pending (from iProX)Dataset title: Brain tissue proteomics from XinxiangPossible reference: Shi, Y. et al. (2020) Identifying Plasma Biomarkers with high specificity for major depressive disorder: A multi-level proteomics study., J Affect Disord, PMID 32905914
PXD060234 Dataset with its publication pending (from iProX)Dataset title: Protective Effects of Bone Marrow Mesenchymal Stem Cell-Derived Exosomes Loaded Cerium Dioxide Nanoparticle Against Deoxynivalenol-Induced Liver DamagePossible reference: Meng, Z. et al. (2025) Protective effects of bone marrow mesenchymal stem cell-derived exosomes loaded cerium dioxide nanoparticle against deoxynivalenol-induced liver damage., J Nanobiotechnology, PMID 40098176
PXD060214 Dataset with its publication pending (from jPOST)Dataset title: Identification of Serum Metabolite Biomarkers and Metabolic Reprogramming Mechanisms to Predict Recurrence in CholangiocarcinomaPossible reference: Prajumwongs, P. et al. (2025) Identification of serum metabolite biomarkers and metabolic reprogramming mechanisms to predict recurrence in cholangiocarcinoma., Sci Rep, PMID 40229491
PXD060210 no publication (from MassIVE)Dataset title: Micrurus ephippifer snake venom proteomics dataPossible reference: Zarzosa, V. et al. (2025) Integrative transcriptomic, proteomic, biochemical and neutralization studies on the venom of Micrurus ephippifer., J Proteomics, PMID 40023277
PXD060183 Dataset with its publication pending (from iProX)Dataset title: The molecular mechanism of AP-2 complex degradation of LLO secreted by Listeria in the cytoplasmPossible reference: Chen, C. et al. (2018) The Listeriolysin O PEST-like Sequence Co-opts AP-2-Mediated Endocytosis to Prevent Plasma Membrane Damage during Listeria Infection., Cell Host Microbe, PMID 29902442
PXD060146 Dataset with its publication pending (from PRIDE)Dataset title: Targeted Translation Inhibition of Chloroplast and Mitochondrial mRNAs by Designer Pentatricopeptide Repeat ProteinsPossible reference: Manavski, N. et al. (2025) Targeted translation inhibition of chloroplast and mitochondrial mRNAs by designer pentatricopeptide repeat proteins., Nucleic Acids Res, PMID 40138717
PXD060140 no publication (from MassIVE)Dataset title: SWAPS: a modular deep-learning empowered peptide identity propagation framework beyond match-between-runPossible reference: Xiao, Z. et al. (2025) SWAPS: A Modular Deep-Learning Empowered Peptide Identity Propagation Framework Beyond Match-Between-Run., J Proteome Res, PMID 40052690
PXD060137 Dataset with its publication pending (from jPOST)Dataset title: Unveiling IRF4-steered regulation of context-dependent effector programs in CD4+ T cells under Th17- and Treg-skewing conditionsPossible reference: Gabele, A. et al. (2025) Unveiling IRF4-steered regulation of context-dependent effector programs in CD4+ T cells under Th17- and Treg-skewing conditions., Cell Rep, PMID 40067830
PXD060069 no publication (from MassIVE)Dataset title: Oxidation of Retromer Complex controls Mitochondrial TranslationPossible reference: Salminen, A. et al. (2013) Impaired autophagy and APP processing in Alzheimer's disease: The potential role of Beclin 1 interactome., Prog Neurobiol, PMID 23827971
PXD060052 Dataset with its publication pending (from iProX)Dataset title: proteomics of Andrographis paniculataPossible reference: Talei, D. et al. (2013) An effective protein extraction method for two-dimensional electrophoresis in the anticancer herb Andrographis paniculata Nees., Biotechnol Appl Biochem, PMID 23725097
PXD060028 Dataset with its publication pending (from PRIDE)Dataset title: Recommendations for Automating Hydrogen/Deuterium Exchange Mass Spectrometry Measurements using Data-Independent Acquisition MethodsPossible reference: Filandr, F. et al. (2025) Examining Instrumental Factors Influencing the Performance of Data-Independent Acquisition Methods in Hydrogen/Deuterium Exchange Mass Spectrometry., Anal Chem, PMID 40165489
PXD059955 Dataset with its publication pending (from iProX)Dataset title: Heat shock chaperone HSPB1 mitigates poly-glycine-induced neurodegeneration via restoration of autophagic fluxPossible reference: Ding, N. et al. (2025) Heat-shock chaperone HSPB1 mitigates poly-glycine-induced neurodegeneration via restoration of autophagic flux., Autophagy, PMID 39936620
PXD059924 Dataset with its publication pending (from PRIDE)Dataset title: Stressosome-independent but RsbT-dependent environmental stress sensing in Bacillus subtilisPossible reference: Khadka, R. et al. (2025) Stressosome-independent but RsbT-dependent environmental stress sensing in Bacillus subtilis., Nat Commun, PMID 39939311
PXD059923 Dataset with its publication pending (from PRIDE)Dataset title: Precise Mycobacterial Species and Subspecies Identification Using the PEP-TORCH Peptidome AlgorithmPossible reference: Bao, D. et al. (2025) Precise mycobacterial species and subspecies identification using the PEP-TORCH peptidome algorithm., EMBO Mol Med, PMID 40038396
PXD059866 Dataset with its publication pending (from iProX)Dataset title: Aspirin inhibits proteasomal degradation and promotes α-synuclein aggregate clearance through K63 ubiquitinationPossible reference: Gao, J. et al. (2025) Aspirin inhibits proteasomal degradation and promotes α-synuclein aggregate clearance through K63 ubiquitination., Nat Commun, PMID 39920137
PXD059860 Dataset with its publication pending (from iProX)Dataset title: NEAT1 Regulates BMSCs Aging Through Disruption of FGF2 Nuclear TransportPossible reference: Wang, Z. et al. (2025) NEAT1 regulates BMSCs aging through disruption of FGF2 nuclear transport., Stem Cell Res Ther, PMID 39876006
PXD059856 Dataset with its publication pending (from iProX)Dataset title: Proteomics of Sternaspis chinensis to understand phosphate biomineralization in annelidsPossible reference: Ge, M. et al. (2025) Proteomics of Sternaspis chinensis to understand phosphate biomineralization in annelids., J Proteomics, PMID 40090575
PXD059854 Dataset with its publication pending (from iProX)Dataset title: Differential protein expression in the alveolar bone tissue of rats with apical periodontitisPossible reference: Belibasakis, GN. et al. (2013) The receptor activator of NF-κB ligand-osteoprotegerin system in pulpal and periapical disease., Int Endod J, PMID 22900632
PXD059839 no publication (from MassIVE)Dataset title: Brain-wide measurement of synaptic protein turnover reveals localized plasticity during learningPossible reference: Mohar, B. et al. (2025) DELTA: a method for brain-wide measurement of synaptic protein turnover reveals localized plasticity during learning., Nat Neurosci, PMID 40164741
PXD059799 Dataset with its publication pending (from iProX)Dataset title: Upregulation of protein O-GlcNAcylation levels promotes zebrafish fin regenerationPossible reference: Jia, L. et al. (2025) Upregulation of Protein O-GlcNAcylation Levels Promotes Zebrafish Fin Regeneration., Mol Cell Proteomics, PMID 40044042
PXD059796 Dataset with its publication pending (from iProX)Dataset title: Proteomic profiling in idiopathic normal-pressure hydrocephalusPossible reference: Fania, C. et al. (2017) Protein signature in cerebrospinal fluid and serum of Alzheimer's disease patients: The case of apolipoprotein A-1 proteoforms., PLoS One, PMID 28628634
PXD059744 Dataset with its publication pending (from iProX)Dataset title: Phosphorylated proteomics of yellowing broccoliPossible reference: He, MJ. et al. (2023) Transcriptomic and Proteomic Analyses of Myzus persicae Carrying Brassica Yellows Virus., Biology (Basel), PMID 37508340
PXD059736 Dataset with its publication pending (from jPOST)Dataset title: Activity-based sensing reveals elevated labile copper promotes liver aging via hepatic ALDH1A1 depletionPossible reference: Zhao, Z. et al. (2025) Activity-based sensing reveals elevated labile copper promotes liver aging via hepatic ALDH1A1 depletion., Nat Commun, PMID 39979263
PXD059703 Dataset with its publication pending (from iProX)Dataset title: Metaproteomics of Daqu SamplesPossible reference: Zhao, J. et al. (2022) Quantitative metaproteomics reveals composition and metabolism characteristics of microbial communities in Chinese liquor fermentation starters., Front Microbiol, PMID 36699582
PXD059686 Dataset with its publication pending (from iProX)Dataset title: Proteomics reveals that vitamin D deficiency leads to immunoglobulin abnormalities and immune dysregulation in patients with post–COVID-19 conditionPossible reference: Ji, W. et al. (2025) Proteomics Reveals That Vitamin D Deficiency Leads to Immunoglobulin Abnormalities and Immune Dysregulation in Patients with Post-COVID-19 Condition., J Proteome Res, PMID 39979118
PXD059683 Dataset with its publication pending (from PRIDE)Dataset title: SpLICE: A reference database enabling in depth proteome and PTM analysis of mouse immune cellsPossible reference: Siemes, D. et al. (2025) A reference database enabling in-depth proteome and PTM analysis of mouse immune cells., Sci Data, PMID 40210874
PXD059632 no publication (from MassIVE)Dataset title: Comparative Analysis of Glycoproteomic Software Using a Tailored Glycan DatabasePossible reference: Hogan, RA. et al. (2024) "Comparative Analysis of Glycoproteomic Software Using a Tailored Glycan Database"., bioRxiv, PMID 39091841
PXD059578 Dataset with its publication pending (from iProX)Dataset title: Chronic stress-induced cholesterol metabolism abnormalities promote ESCC tumorigenesis and predict neoadjuvant therapy responsePossible reference: Wang, T. et al. (2025) Chronic stress-induced cholesterol metabolism abnormalities promote ESCC tumorigenesis and predict neoadjuvant therapy response., Proc Natl Acad Sci U S A, PMID 39869796
PXD059539 Dataset with its publication pending (from PRIDE)Dataset title: FMNL2/SRC-mediated androgen receptor translocation into the nucleus promotes enzalutamide resistance of prostate cancerPossible reference: Yu, J. et al. (2025) FMNL2/SRC-mediated androgen receptor translocation into the nucleus promotes enzalutamide resistance of prostate cancer., iScience, PMID 40212590
PXD059478 Dataset with its publication pending (from iProX)Dataset title: Effect of Iron Homeostasis in Aeromonas hydrophilaPossible reference: Teng, T. et al. (2017) Molecular cloning and expression analysis of Megalobrama amblycephala transferrin gene and effects of exposure to iron and infection with Aeromonas hydrophila., Fish Physiol Biochem, PMID 28236008
PXD059464 Dataset with its publication pending (from PRIDE)Dataset title: Nuclear-localized HKDC1 promotes hepatocellular carcinoma through phosphorylating RBBP5 to upregulate H3K4me3Possible reference: Ye, L. et al. (2025) Nuclear-localized HKDC1 promotes hepatocellular carcinoma through phosphorylating RBBP5 to upregulate H3K4me3., Cell Rep, PMID 39891906
PXD059447 Dataset with its publication pending (from iProX)Dataset title: Novel kethoxal derivatives-assisted identification of single-stranded RNA-binding proteinsPossible reference: Zhao, R. et al. (2023) Transcriptome-wide identification of single-stranded RNA binding proteins., Chem Sci, PMID 37063799
PXD059443 Dataset with its publication pending (from iProX)Dataset title: Exploring the effects of metformin on the body by urine proteomePossible reference: Chen, Y. et al. (2025) Exploring the Effects of Metformin on the Body via the Urine Proteome., Biomolecules, PMID 40001544
PXD059440 no publication (from MassIVE)Dataset title: Identification of disulfide bond-linking sites in biosynthesized platelet factor 4 by establishing a partial reduction method without alkylationPossible reference: Hu, W. et al. (2025) Identification of disulfide bond-linking sites in biosynthesized platelet factor 4 by establishing a partial reduction method without alkylation., Anal Methods, PMID 39865791
PXD059425 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic Profile of multidrug- resistant Serratia marcescens under meropenem challengePossible reference: Ferreira, RL. et al. (2025) Proteomic profile of multidrug-resistant Serratia marcescens under meropenem challenge., Microb Pathog, PMID 40222567
PXD059395 Dataset with its publication pending (from PRIDE)Dataset title: Liquid crystal monomers induce placental development and progesterone release dysregulation through transplacental transportationPossible reference: Zhang, S. et al. (2025) Liquid crystal monomers induce placental development and progesterone release dysregulation through transplacental transportation., Nat Commun, PMID 39885209
PXD059392 Dataset with its publication pending (from PRIDE)Dataset title: G3BP1 Ribonucleoprotein Complexes Regulate Focal Adhesion Protein Mobility and Cell MigrationPossible reference: Boraas, LC. et al. (2025) G3BP1 ribonucleoprotein complexes regulate focal adhesion protein mobility and cell migration., Cell Rep, PMID 39883578
PXD059357 Dataset with its publication pending (from iProX)Dataset title: A Novel α-Conotoxin [D1G, Q14] LvIC Decreased Mouse Locomotor ActivityPossible reference: Wang, W. et al. (2024) A novel α-conotoxin [D1G, ΔQ14] LvIC decreased mouse locomotor activity., Front Pharmacol, PMID 39906393
PXD059326 Dataset with its publication pending (from iProX)Dataset title: Characterizing the Variation in Safflower Seed Viability under Different Storage Conditions through Lipidomic and Proteomic AnalysesPossible reference: Peng, Y. et al. (2025) Characterizing the variation in safflower seed viability under different storage conditions through lipidomic and proteomic analyses., Sci Rep, PMID 40097562
PXD059321 Dataset with its publication pending (from iProX)Dataset title: In-depth Spatial Proteomics for Whole Tissue Profiling by Sparse Sampling StrategyPossible reference: Qin, R. et al. (2025) In-depth and high-throughput spatial proteomics for whole-tissue slice profiling by deep learning-facilitated sparse sampling strategy., Cell Discov, PMID 40064869
PXD059299 Dataset with its publication pending (from iProX)Dataset title: Plasma metabolome alterations in cardiac surgery-associated acute kidney injuryPossible reference: Bai, Y. et al. (2023) Metabolomic interplay between gut microbiome and plasma metabolome in cardiac surgery-associated acute kidney injury., Rapid Commun Mass Spectrom, PMID 36918294
PXD059259 Dataset with its publication pending (from iProX)Dataset title: N-acetylation of α-synuclein enhances synaptic vesicle clustering mediated by α-synuclein and lysophosphatidylcholinePossible reference: Wang, C. et al. (2024) N-acetylation of α-synuclein enhances synaptic vesicle clustering mediated by α-synuclein and lysophosphatidylcholine., bioRxiv, PMID 38496494
PXD059237 no publication (from MassIVE)Dataset title: Multi-omic Signatures of Host Response Associated with Presence, Type, and Outcome of Enterococcal Bacteremia proteomics data Possible reference: Bayne, C. et al. (2025) Multi-omic signatures of host response associated with presence, type, and outcome of enterococcal bacteremia., mSystems, PMID 39835799
PXD059236 Dataset with its publication pending (from PRIDE)Dataset title: to screen the Treg inhibitor and investigate its mechanism in tumorPossible reference: Li, CG. et al. (2013) Akt promotes irradiation-induced regulatory T-cell survival in hepatocellular carcinoma., Am J Med Sci, PMID 23255243
PXD059229 Dataset with its publication pending (from iProX)Dataset title: Proteogenomic Analysis of Cyprinid Herpesvirus 2Possible reference: Xu, C. et al. (2025) Proteogenomic analysis of Cyprinid herpesvirus 2 using high-resolution mass spectrometry., J Virol, PMID 40172206
PXD059224 Dataset with its publication pending (from PanoramaPublic)Dataset title: Massively parallel assessment of designed protein solution properties using mass spectrometry and peptide barcodingPossible reference: Feldman, D. et al. (2025) Massively parallel assessment of designed protein solution properties using mass spectrometry and peptide barcoding., bioRxiv, PMID 40060547
PXD059207 Dataset with its publication pending (from iProX)Dataset title: Integrated analysis of proteome and transcriptome profiling reveals pan-cancer-associated pathways and molecular biomarkersPossible reference: Hu, GS. et al. (2025) Integrated Analysis of Proteome and Transcriptome Profiling Reveals Pan-Cancer-Associated Pathways and Molecular Biomarkers., Mol Cell Proteomics, PMID 39884577
PXD059206 Dataset with its publication pending (from iProX)Dataset title: Targeting the Galectin-7/TRPM2/Zn2+/DRP-1 Signaling Pathway: A Potential Therapeutic Intervention in the Pathogenesis of SJS/TENPossible reference: Zhang, C. et al. (2025) Targeting the Galectin-7/TRPM2/Zn2+/DRP-1 Signaling Pathway: A Potential Therapeutic Intervention in the Pathogenesis of SJS/TEN., Allergy, PMID 40042066
PXD059197 Dataset with its publication pending (from iProX)Dataset title: Identification of the B7-H3 Interaction Partners Using a Proximity Labeling StrategyPossible reference: Liao, S. et al. (2025) Identification of the B7-H3 Interaction Partners Using a Proximity Labeling Strategy., Int J Mol Sci, PMID 40004194
PXD059172 Dataset with its publication pending (from PRIDE)Dataset title: A Proteogenomic View of Synchronous Endometrioid Endometrial and Ovarian CancerPossible reference: Coscia, F. et al. (2025) A Proteogenomic View of Synchronous Endometrioid Endometrial and Ovarian Cancer., Clin Cancer Res, PMID 40145935
PXD059136 Dataset with its publication pending (from iProX)Dataset title: The role of neutrophils on SF protein carbamylationPossible reference: Frasca, L. et al. (2018) Anti-LL37 Antibodies Are Present in Psoriatic Arthritis (PsA) Patients: New Biomarkers in PsA., Front Immunol, PMID 30279686
PXD059089 Dataset with its publication pending (from PRIDE)Dataset title: Proteostasis and lysosomal repair deficits in transdifferentiated neurons of Alzheimer's diseasePossible reference: Chou, CC. et al. (2025) Proteostasis and lysosomal repair deficits in transdifferentiated neurons of Alzheimer's disease., bioRxiv, PMID 37034684
PXD059077 Dataset with its publication pending (from iProX)Dataset title: Chicken ovary rapid DIA proteome dataPossible reference: Huang, X. et al. (2025) Proteomic analysis of egg production peak and senescence in the ovaries of Taihe black-boned silky fowl (Gallus gallus domesticus Brisson)., BMC Genomics, PMID 39773120
PXD058951 Kegley, N. R., Ito, A., Williamson, D. B., McArdle, C. C., and Haltiwanger, R. S. Marfan syndrome variation of the POGLUT2 and POGLUT3 consensus sequence can produce aberrant fibrillin-1 O-glucosylation. Journal of Biological Chemistry (from PanoramaPublic)Dataset title: Marfan syndrome variation of the POGLUT2 and POGLUT3 consensus sequence can produce aberrant fibrillin-1 O-glucosylationPossible reference: Kegley, NR. et al. (2025) Marfan syndrome variation of the POGLUT2 and POGLUT3 consensus sequence can produce aberrant fibrillin-1 O-glucosylation., J Biol Chem, PMID 40107616
PXD058930 Dataset with its publication pending (from iProX)Dataset title: Dissecting the anti-pancreatic cancer mechanism of gold nanorods mediate photothermal therapy through quantitative proteomics analysisPossible reference: Sun, Z. et al. (2025) Dissecting the anti-pancreatic cancer mechanism of gold nanorods mediate photothermal therapy through quantitative proteomics analysis., Biochem Biophys Res Commun, PMID 39798534
PXD058886 Dataset with its publication pending (from iProX)Dataset title: Application of integrated omics in aseptic loosening of prostheses after hip replacementPossible reference: Liu, YK. et al. (2025) Application of integrated omics in aseptic loosening of prostheses after hip replacement., Mol Med Rep, PMID 39749710
PXD058862 no publication (from MassIVE)Dataset title: Reproductive Adaptation of Astyanax mexicanus Under Nutrient LimitationPossible reference: Xia, F. et al. (2025) Reproductive Adaptation of Astyanax mexicanus Under Nutrient Limitation., bioRxiv, PMID 40027826
PXD058788 no publication (from MassIVE)Dataset title: A ubiquitin ligase protects lysosomes from CLN4 mutant-induced membrane damagesPossible reference: Lee, J. et al. (2025) CHIP protects lysosomes from CLN4 mutant-induced membrane damages., bioRxiv, PMID 40027688
PXD058768 Dataset with its publication pending (from PRIDE)Dataset title: Integrating Protein Language Models and Automatic Biofoundry for Enhanced Protein EvolutionPossible reference: Zhang, Q. et al. (2025) Integrating protein language models and automatic biofoundry for enhanced protein evolution., Nat Commun, PMID 39934638
PXD058713 Dataset with its publication pending (from iProX)Dataset title: Model of rat rhabdomyolysis-induced acute kidney injury ProteomicsPossible reference: Zhang, Y. et al. (2024) Proteomic analysis of multiple organ dysfunction induced by rhabdomyolysis., J Proteomics, PMID 38403185
PXD058703 no publication (from MassIVE)Dataset title: In-depth Characterization of S-Glutathionylation of Ventricular Myosin Light Chain 1 Across Species by Top-Down Proteomics Possible reference: Chapman, EA. et al. (2024) In-depth Characterization of S-Glutathionylation in Ventricular Myosin Light Chain 1 Across Species by Top-Down Proteomics., bioRxiv, PMID 39713419
PXD058674 Dataset with its publication pending (from iProX)Dataset title: TGM2-mediated histone serotonylation promotes HCC progression via MYC signalling pathwayPossible reference: Dong, R. et al. (2025) TGM2-mediated histone serotonylation promotes HCC progression via MYC signalling pathway., J Hepatol, PMID 39788430
PXD058669 Dataset with its publication pending (from jPOST)Dataset title: Variant mutation in SARS-CoV-2 nucleocapsid enhances viral infection via altered genomic encapsidation Possible reference: Kubinski, HC. et al. (2024) Variant mutation in SARS-CoV-2 nucleocapsid enhances viral infection via altered genomic encapsidation., bioRxiv, PMID 38559000
PXD058668 Dataset with its publication pending (from PRIDE)Dataset title: A subcellular map of translational machinery composition and regulation at the single-molecule levelPossible reference: Zhang, Z. et al. (2025) A subcellular map of translational machinery composition and regulation at the single-molecule level., Science, PMID 40048539
PXD058656 Dataset with its publication pending (from PRIDE)Dataset title: A BAG-1-inhibitory peptide, GO-Pep, suppresses c-Raf activity in cancerPossible reference: Tatli, O. et al. (2025) A BAG-1-inhibitory peptide, GO-Pep, suppresses c-Raf activity in cancer., Commun Biol, PMID 40021821
PXD058602 Dataset with its publication pending (from iProX)Dataset title: ERK- and USP9X-coupled regulation of thymidine kinase 1 promotes both its enzyme activity-dependent and enzyme activity-independent functions for tumor growthPossible reference: Tao, J. et al. (2025) ERK-USP9X-coupled regulation of thymidine kinase 1 promotes both its enzyme activity-dependent and its enzyme activity-independent functions for tumor growth., Nat Struct Mol Biol, PMID 39824978
PXD058573 Dataset with its publication pending (from PRIDE)Dataset title: Impact of exercise on the proteome of human peripheral blood mononuclear cellsPossible reference: Chen, YY. et al. (2024) Impact of Senescent Cell-Derived Extracellular Vesicles on Innate Immune Cell Function., Adv Biol (Weinh), PMID 39441562
PXD058571 Dataset with its publication pending (from PRIDE)Dataset title: The SPFH complex HflK-HflC regulates aerobic respiration in bacteriaPossible reference: Pérez-López, MI. et al. (2025) The SPFH complex HflK-HflC regulates aerobic respiration in bacteria., PLoS Biol, PMID 40193326
PXD058557 Dataset with its publication pending (from iProX)Dataset title: Yellow catfish brain exposure to hypoxiaPossible reference: Pei, X. et al. (2021) Effects of acute hypoxia and reoxygenation on oxygen sensors, respiratory metabolism, oxidative stress, and apoptosis in hybrid yellow catfish "Huangyou-1"., Fish Physiol Biochem, PMID 34313912
PXD058535 Dataset with its publication pending (from PRIDE)Dataset title: Ubiquitination proteome profiling of Candida albicansPossible reference: Sandai, D. et al. (2012) The evolutionary rewiring of ubiquitination targets has reprogrammed the regulation of carbon assimilation in the pathogenic yeast Candida albicans., mBio, PMID 23232717
PXD058506 Dataset with its publication pending (from iProX)Dataset title: MAGL Targeted PROTAC Degrader Simultaneously Enhances P53 for Synergistic Treatment of Glioblastoma Stem CellPossible reference: Yuan, Z. et al. (2025) MAGL targeted PROTAC degrader simultaneously enhances P53 for synergistic treatment of glioblastoma stem cell., Cell Death Discov, PMID 40113745
PXD058477 no publication (from MassIVE)Dataset title: Urolithin A protects hepatocytes from palmitic acid-induced ER stress by regulating calcium homeostasis in the MAMPossible reference: Ryu, G. et al. (2024) Urolithin A Protects Hepatocytes from Palmitic Acid-Induced ER Stress by Regulating Calcium Homeostasis in the MAM., Biomolecules, PMID 39766212
PXD058460 Dataset with its publication pending (from iProX)Dataset title: Moderate-Intensity Interval Exercise Exacerbates Cardiac Lipotoxicity in High-Fat, High-Calories Diet-Fed MicePossible reference: Geng, J. et al. (2025) Moderate-intensity interval exercise exacerbates cardiac lipotoxicity in high-fat, high-calories diet-fed mice., Nat Commun, PMID 39800728
PXD058458 Dataset with its publication pending (from iProX)Dataset title: IEC-TMT for pTyr protein complex analysisPossible reference: Liu, W. et al. (2024) Unraveling of Phosphotyrosine Signaling Complexes Associated with T Cell Exhaustion Using Multiplex Co-Fractionation/Mass Spectrometry., Anal Chem, PMID 39661755
PXD058347 Dataset with its publication pending (from PRIDE)Dataset title: In-Cell Fast Photochemical Oxidation of Integral Membrane ProteinsPossible reference: Farrokhi, V. et al. (2015) Development of structural marker peptides for cystic fibrosis transmembrane conductance regulator in cell plasma membrane by reversed-footprinting mass spectrometry., Anal Chem, PMID 26236917
PXD058327 Dataset with its publication pending (from PRIDE)Dataset title: The PRC1 and PRC2 proximal interactomePossible reference: Zijlmans, DW. et al. (2025) PRC1 and PRC2 proximal interactome in mouse embryonic stem cells., Cell Rep, PMID 40053453
PXD058303 Dataset with its publication pending (from iProX)Dataset title: ATAD2 is a Potential Immunotherapy Target for Patients with Small Cell Lung Cancer Harboring HLA-A*0201Possible reference: Yuan, L. et al. (2025) ATAD2 is a potential immunotherapy target for patients with small cell lung cancer harboring HLA-A∗0201., EBioMedicine, PMID 39808946
PXD058284 Dataset with its publication pending (from PRIDE)Dataset title: Clinical Evaluation of Advanced MALDI-TOF MS for Carbapenemase Subtyping in Gram-negative IsolatesPossible reference: Cheon, DH. et al. (2025) Clinical evaluation of advanced MALDI-TOF MS for carbapenemase subtyping in Gram-negative isolates., J Clin Microbiol, PMID 39611795
PXD058227 Dataset with its publication pending (from PRIDE)Dataset title: Identification of EcpK, a bacterial tyrosine pseudokinase important for exopolysaccharide biosynthesis in Myxococcus xanthusPossible reference: Blöcher, L. et al. (2025) Identification of EcpK, a bacterial tyrosine pseudokinase important for exopolysaccharide biosynthesis in Myxococcus xanthus., J Bacteriol, PMID 40067014
PXD058218 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic and phosphoproteomic analyses for HT-29Possible reference: Abe, Y. et al. (2017) Deep Phospho- and Phosphotyrosine Proteomics Identified Active Kinases and Phosphorylation Networks in Colorectal Cancer Cell Lines Resistant to Cetuximab., Sci Rep, PMID 28874695
PXD058194 Dataset with its publication pending (from PRIDE)Dataset title: The adaptor protein AP-3β disassembles heat-induced stress granules via 19S RP-associated deubiquitylation in ArabidopsisPossible reference: Pang, L. et al. (2025) The adaptor protein AP-3β disassembles heat-induced stress granules via 19S regulatory particle in Arabidopsis., Nat Commun, PMID 40016204
PXD058168 Dataset with its publication pending (from PRIDE)Dataset title: DSIF factor Spt5 coordinates transcription, maturation and exoribonucleolysis of RNA polymerase II transcriptsPossible reference: KuÅ›, K. et al. (2025) DSIF factor Spt5 coordinates transcription, maturation and exoribonucleolysis of RNA polymerase II transcripts., Nat Commun, PMID 39746995
PXD058157 Dataset with its publication pending (from iProX)Dataset title: Proteomic analysis reveals changes in protein expression in oocytes at different meiosis stagesPossible reference: Shen, X. et al. (2021) Quantitative proteomic analysis of chicken serum reveals key proteins affecting follicle development during reproductive phase transitions., Poult Sci, PMID 33357697
PXD058152 no publication (from MassIVE)Dataset title: Mitochondrial Calcium Signaling Regulates Branched-Chain Amino Acid Catabolism in Fibrolamellar CarcinomaPossible reference: Marsh, NM. et al. (2024) Mitochondrial Calcium Signaling Regulates Branched-Chain Amino Acid Catabolism in Fibrolamellar Carcinoma., bioRxiv, PMID 38853984
PXD058112 Dataset with its publication pending (from iProX)Dataset title: Flutamide untargeted metabolomics dataPossible reference: Yamazaki, M. et al. (2013) Perturbation of bile acid homeostasis is an early pathogenesis event of drug induced liver injury in rats., Toxicol Appl Pharmacol, PMID 23360887
PXD058111 Dataset with its publication pending (from iProX)Dataset title: Molecular insights into oocyte development and sperm storage in black rockfish (Sebastes schlegelii): proteomic changes across reproductive stagesPossible reference: Chen, Y. et al. (2025) Molecular insights into oocyte development and sperm storage in black rockfish (Sebastes schlegelii): Proteomic changes across reproductive stages., Comp Biochem Physiol Part D Genomics Proteomics, PMID 39612540
PXD058067 Dataset with its publication pending (from iProX)Dataset title: Mechanism of enhancing chemotherapy efficacy in pancreatic ductal adenocarcinoma with paricalcitol and hydroxychloroquinePossible reference: Nagaraju, GP. et al. (2025) Mechanism of enhancing chemotherapy efficacy in pancreatic ductal adenocarcinoma with paricalcitol and hydroxychloroquine., Cell Rep Med, PMID 39730001
PXD058058 Dataset with its publication pending (from iProX)Dataset title: Molecular mechanisms of aquaporins regulation of cold response in the Haemaphysalis longicornisPossible reference: Wang, H. et al. (2025) Aquaporins modulate the cold response of Haemaphysalis longicornis via changes in gene and protein expression of fatty acids., Parasit Vectors, PMID 39994701
PXD058028 Dataset with its publication pending (from jPOST)Dataset title: Therapy-induced senescence is a drug resistance mechanism in breast cancerPossible reference: McDermott, MSJ. et al. (2019) HER2-Targeted Tyrosine Kinase Inhibitors Cause Therapy-Induced-Senescence in Breast Cancer Cells., Cancers (Basel), PMID 30743996
PXD058018 Dataset with its publication pending (from iProX)Dataset title: DIA quantitative proteomics of CENPM knockdown SW-13 cellsPossible reference: Zou, C. et al. (2025) Identification of CENPM as a key gene driving adrenocortical carcinoma metastasis via physical interaction with immune checkpoint ligand FGL1., Clin Transl Med, PMID 39778025
PXD058017 Dataset with its publication pending (from iProX)Dataset title: E2-Ub-R74G strategy reveals E2-specific ubiquitin conjugation profiles in live cellsPossible reference: Shen, S. et al. (2025) E2-Ub-R74G strategy reveals E2-specific ubiquitin conjugation profiles in live cells., Nat Chem Biol, PMID 39762535
PXD058003 Dataset with its publication pending (from PRIDE)Dataset title: Comparative single-cell and spatial transcriptomics illuminate bat immunity and barrier tissue evolutionPossible reference: Levinger, R. et al. (2025) Single-cell and Spatial Transcriptomics Illuminate Bat Immunity and Barrier Tissue Evolution., Mol Biol Evol, PMID 39836373
PXD057978 Dataset with its publication pending (from iProX)Dataset title: Murine Leukemia Virus GlycoGag Antagonizes SERINC5 via the ER-phagy Receptor RETREG1Possible reference: Ahmad, I. et al. (2025) Murine Leukemia Virus GlycoGag Antagonizes SERINC5 via ER-phagy Receptor RETREG1., bioRxiv, PMID 40093084
PXD057961 Dataset with its publication pending (from PRIDE)Dataset title: Angiostrongylus cantonensis extracellular vesicles (EVs) proteomesPossible reference: Cheng, C-J. et al. (2025) Extracellular vesicles from fifth-stage larval Angiostrongylus cantonensis upregulate cholesterol biosynthesis and suppress NLRP2-associated inflammatory responses in mouse astrocytes., mSystems, PMID 39636121
PXD057934 no publication (from MassIVE)Dataset title: Distinct Gene Regulatory Dynamics Drive Skeletogenic Cell Fate Convergence During Vertebrate EmbryogenesisPossible reference: Wang, M. et al. (2025) Distinct gene regulatory dynamics drive skeletogenic cell fate convergence during vertebrate embryogenesis., Nat Commun, PMID 40038298
PXD057927 Dataset with its publication pending (from iProX)Dataset title: IMPDH2 dephosphorylation mediated by PPP2R1A promotes S-phase progressionPossible reference: Zhou, B. et al. (2025) IMPDH2 dephosphorylation under FGFR signaling promotes S-phase progression and tumor growth., Cell Rep, PMID 39739531
PXD057926 Dataset with its publication pending (from PRIDE)Dataset title: The epigenetic reader Phf2 is positioned in the genome by cohesinPossible reference: Tang, W. et al. (2025) Cohesin positions the epigenetic reader Phf2 within the genome., EMBO J, PMID 39748119
PXD057917 Dataset with its publication pending (from iProX)Dataset title: USP5 Stabilizes YTHDF1 to Control Cancer Immune Surveillance through mTORC1-mediated PhosphorylationPossible reference: Shao, N. et al. (2025) USP5 stabilizes YTHDF1 to control cancer immune surveillance through mTORC1-mediated phosphorylation., Nat Commun, PMID 39900921
PXD057902 Dataset with its publication pending (from PRIDE)Dataset title: Test HDX experiment on cytochrome CPossible reference: Donohoe, GC. et al. (2015) Ion mobility spectrometry-hydrogen deuterium exchange mass spectrometry of anions: part 1. Peptides to proteins., J Am Soc Mass Spectrom, PMID 25510931
PXD057880 Dataset with its publication pending (from iProX)Dataset title: Zfp260 choreographs the early stage lineage commitment of skeletal stem cellsPossible reference: Weng, Y. et al. (2024) Zfp260 choreographs the early stage osteo-lineage commitment of skeletal stem cells., Nat Commun, PMID 39582024
PXD057873 Dataset with its publication pending (from iProX)Dataset title: Shigella infection is facilitated by interaction of human enteric α-defensin 5 with colonic epithelial receptor P2Y11Possible reference: Xu, D. et al. (2025) Shigella infection is facilitated by interaction of human enteric α-defensin 5 with colonic epithelial receptor P2Y11., Nat Microbiol, PMID 39901059
PXD057872 Dataset with its publication pending (from iProX)Dataset title: Proteome of Mpox virus A5L-expressing HEK293T cellsPossible reference: Li, M. et al. (2025) Transcriptomic and Proteomic Analysis of Monkeypox Virus A5L-Expressing HEK293T Cells., Int J Mol Sci, PMID 39796253
PXD057858 no publication (from MassIVE)Dataset title: HIF Regulates Multiple Translated Endogenous Retroviruses: Implications for Cancer ImmunotherapyPossible reference: Jiang, Q. et al. (2025) HIF regulates multiple translated endogenous retroviruses: Implications for cancer immunotherapy., Cell, PMID 40023154
PXD057852 no publication (from MassIVE)Dataset title: Characterization of site-specific O- and N-glycopeptides from recombinant spike and ACE2 glycoproteins using LC-MS/MS analysisPossible reference: Song, JH. et al. (2024) Characterization of Site-Specific N- and O-Glycopeptides from Recombinant Spike and ACE2 Glycoproteins Using LC-MS/MS Analysis., Int J Mol Sci, PMID 39769415
PXD057840 no publication (from MassIVE)Dataset title: Multi-omics analysis of endothelial cells reveals the metabolic diversity that underlies endothelial cell functionsPossible reference: Galbraith, MD. et al. (2021) Seroconversion stages COVID19 into distinct pathophysiological states., Elife, PMID 33724185
PXD057837 Dataset with its publication pending (from jPOST)Dataset title: Salt stress activates CDK8-AHL10-SUVH2/9 module to dynamically regulate salt tolerance in ArabidopsisPossible reference: Guo, P. et al. (2025) Salt stress activates the CDK8-AHL10-SUVH2/9 module to dynamically regulate salt tolerance in Arabidopsis., Nat Commun, PMID 40074748
PXD057820 Dataset with its publication pending (from iProX)Dataset title: Proteomic and Acetylation Profiling of Stemness Induced by Soft Matrix in Breast Cancer Repopulating CellsPossible reference: Han, R. et al. (2025) Dynamic Proteomic and Acetylomic Profiling of Mechanically Induced Cancer Stemness in Breast Cancer Cells., Proteomics, PMID 39981796
PXD057817 Dataset with its publication pending (from iProX)Dataset title: Proteomic analysis of meninges from autoimmune encephalitis (mouse model)Possible reference: Lesec, L. et al. (2024) Specific and Polyfunctional T Cell Response Against N-Methyl-d-aspartate Receptor in an Autoantibody-Mediated Encephalitis Model., Biomedicines, PMID 39595024
PXD057815 Dataset with its publication pending (from iProX)Dataset title: Structural insights into dynamics of the BMV TLS aminoacylationPossible reference: Yang, W. et al. (2025) Structural insights into dynamics of the BMV TLS aminoacylation., Nat Commun, PMID 39900568
PXD057797 Dataset with its publication pending (from PRIDE)Dataset title: Mechanisms of recalcitrant fucoidan breakdown in marine PlanctomycetotaPossible reference: Pérez-Cruz, C. et al. (2024) Mechanisms of recalcitrant fucoidan breakdown in marine Planctomycetota., Nat Commun, PMID 39738071
PXD057796 no publication (from MassIVE)Dataset title: Rare SNP in the HELB gene interferes with RPA interaction and cellular function of HELBPossible reference: Osei, B. et al. (2024) Rare SNP in the HELB gene interferes with RPA interaction and cellular function of HELB., bioRxiv, PMID 38464108
PXD057768 Dataset with its publication pending (from iProX)Dataset title: Methylcobalamin protects against liver failure via engaging gasdermin EPossible reference: Xu, W. et al. (2025) Methylcobalamin protects against liver failure via engaging gasdermin E., Nat Commun, PMID 39890804
PXD057757 no publication (from MassIVE)Dataset title: diaPASEF-Powered Chemoproteomics Enables Deep Kinome Interaction ProfilingPossible reference: Woods, K. et al. (2024) diaPASEF-Powered Chemoproteomics Enables Deep Kinome Interaction Profiling., bioRxiv, PMID 39605566
PXD057732 Dataset with its publication pending (from iProX)Dataset title: Proteomic and phosphoproteomic analyses reveal the biological perturbations caused by capsaicinPossible reference: Li, Z. et al. (2025) Proteomic and phosphoproteomic analyses reveal the biological perturbations caused by capsaicin treatment., Food Res Int, PMID 40022394
PXD057731 Dataset with its publication pending (from iProX)Dataset title: PTMsite-Finder supports DIA-NN-based PTM DIA proteomicsPossible reference: Krautkramer, KA. et al. (2015) Quantification of SAHA-Dependent Changes in Histone Modifications Using Data-Independent Acquisition Mass Spectrometry., J Proteome Res, PMID 26120868
PXD057728 Dataset with its publication pending (from iProX)Dataset title: Proteomic analysis of butyric acid inhibition of the growth of E. coliPossible reference: Yin, H. et al. (2025) Butyric acid from ligilactobacillus animalis 2020MB acts on membrane BamA to control avian pathogenic escherichia coli., Poult Sci, PMID 40187014
PXD057724 Dataset with its publication pending (from iProX)Dataset title: Vessel-on-a-Chip Coupled Proteomics Reveal Pressure-Overload-Induced Vascular RemodelingPossible reference: Liu, Y. et al. (2025) Vessel-On-A-Chip Coupled Proteomics Reveal Pressure-Overload-Induced Vascular Remodeling., Adv Sci (Weinh), PMID 40126137
PXD057723 Dataset with its publication pending (from iProX)Dataset title: Screening and Verification of Differentially Expressed Serum Proteins in Children with Severe Adenovirus PneumoniaPossible reference: Gao, ZX. et al. (2024) Screening and verification of differentially expressed serum proteins in children with severe adenovirus pneumonia., Front Public Health, PMID 39635211
PXD057722 Dataset with its publication pending (from iProX)Dataset title: Effects of obesity on kidney complications in mice and precise prevention and treatmentPossible reference: Larkin, BP. et al. (2022) Low-dose hydralazine reduces albuminuria and glomerulosclerosis in a mouse model of obesity-related chronic kidney disease., Diabetes Obes Metab, PMID 35635331
PXD057721 Dataset with its publication pending (from iProX)Dataset title: Fam170a deficiency causes male infertility by impairing histone-to-protamine exchange during mouse spermiogenesisPossible reference: Cheng, J. et al. (2025) Fam170a deficiency causes male infertility by impairing histone-to-protamine exchange during mouse spermiogenesis., Nucleic Acids Res, PMID 39868537
PXD057710 Dataset with its publication pending (from PRIDE)Dataset title: Fine-tuning regulation of (p)ppGpp-driven outer membrane vesicle formation in Acinetobacter baumanniiPossible reference: Han, S. et al. (2025) Fine-tuning regulation of (p)ppGpp-driven outer membrane vesicle formation in Acinetobacter baumannii., FEBS J, PMID 40172085
PXD057649 Dataset with its publication pending (from iProX)Dataset title: Glial UDP-glycosyltransferase Ugt35b regulates longevity by maintaining lipid homeostasis in DrosophilaPossible reference: Sheng, L. et al. (2025) The glial UDP-glycosyltransferase Ugt35b regulates longevity by maintaining lipid homeostasis in Drosophila., Cell Rep, PMID 39723892
PXD057642 Dataset with its publication pending (from iProX)Dataset title: Phospho-proteomics analysis of early-response of U251 cells to X-ray irradiationPossible reference: Ben Diouf, O. et al. (2024) Phospho-Proteomics Analysis of Early Response to X-Ray Irradiation Reveals Molecular Mechanism Potentially Related to U251 Cell Radioresistance., Proteomes, PMID 39846632
PXD057626 no publication (from MassIVE)Dataset title: Nanobody-thioesterase chimeras to specifically target protein palmitoylationPossible reference: Kuo, CW. et al. (2025) Nanobody-thioesterase chimeras to specifically target protein palmitoylation., Nat Commun, PMID 39920166
PXD057613 no publication (from MassIVE)Dataset title: Enhancing the bothropic antivenom through a reverse antivenomics approachPossible reference: Sousa, LF. et al. (2017) Functional proteomic analyses of Bothrops atrox venom reveals phenotypes associated with habitat variation in the Amazon., J Proteomics, PMID 28274896
PXD057589 no publication (from MassIVE)Dataset title: Baculoviral IAP repeat-containing protein 6 Ubiquitinates KRAS4APossible reference: Kochen Rossi, J. et al. (2025) The differential interactomes of the KRAS splice variants identify BIRC6 as a ubiquitin ligase for KRAS4A., Cell Rep, PMID 39705142
PXD057583 no publication (from MassIVE)Dataset title: Mass Spectrometry-Based Proteomics of Extracellular Vesicle Proteins (EVPs)Possible reference: Kenari, AN. et al. (2023) Protocol for Plasma Extracellular Vesicle and Particle Isolation and Mass Spectrometry-Based Proteomic Identification., Methods Mol Biol, PMID 36781793
PXD057580 doi: https://doi.org/10.1101/2024.11.05.622109 (from PanoramaPublic)Dataset title: SysQuan: repurposing SILAC mice for the affordable absolute quantitation of the human proteomePossible reference: Mohammed, Y. et al. (2025) SysQuan: repurposing SILAC mice for the cost-effective absolute quantitation of the human proteome., Mol Cell Proteomics, PMID 40254065
PXD057516 Dataset with its publication pending (from iProX)Dataset title: Reconstitution of Pluripotency from Mouse Fibroblast through Sall4 OverexpressionPossible reference: Xiao, L. et al. (2024) Reconstitution of pluripotency from mouse fibroblast through Sall4 overexpression., Nat Commun, PMID 39737935
PXD057509 Dataset with its publication pending (from iProX)Dataset title: Quantitative N-glycoproteomic analysis reveals glycosylation signatures of plasma immunoglobulin G in systemic sclerosisPossible reference: Cheng, L. et al. (2025) Quantitative N-glycoproteomic analysis reveals glycosylation signatures of plasma immunoglobulin G in systemic sclerosis., Front Immunol, PMID 39991159
PXD057483 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic Profiling of Latex from Hevea SpeciesPossible reference: Wang, D. et al. (2018) Subcellular proteome profiles of different latex fractions revealed washed solutions from rubber particles contain crucial enzymes for natural rubber biosynthesis., J Proteomics, PMID 29729991
PXD057473 Dataset with its publication pending (from iProX)Dataset title: Mass spectrometry of different lymph node metastasis states in papillary thyroid carcinomaPossible reference: Zhang, Z. et al. (2021) Distinguishing Benign and Malignant Thyroid Nodules and Identifying Lymph Node Metastasis in Papillary Thyroid Cancer by Plasma N-Glycomics., Front Endocrinol (Lausanne), PMID 34248851
PXD057444 Dataset with its publication pending (from PRIDE)Dataset title: Ionizable polymeric micelles (IPMs) for efficient siRNA deliveryPossible reference: Zhou, Z. et al. (2025) Ionizable polymeric micelles (IPMs) for efficient siRNA delivery., Nat Commun, PMID 39753560
PXD057426 Dataset with its publication pending (from PRIDE)Dataset title: Mettl1-mediated B cell responsesPossible reference: Wang, S. et al. (2024) Aberrant METTL1-mediated tRNA m7G modification alters B-cell responses in systemic autoimmunity in humans and mice., Nat Commun, PMID 39638793
PXD057403 Dataset with its publication pending (from PRIDE)Dataset title: A viral protein activates the MAPK pathway to promote viral infection by downregulating callose deposition in plantsPossible reference: Feng, L. et al. (2024) A viral protein activates the MAPK pathway to promote viral infection by downregulating callose deposition in plants., Nat Commun, PMID 39632828
PXD057400 no publication (from MassIVE)Dataset title: Self-priming of Plk1 binding to BubR1 ensures accurate mitotic progressionPossible reference: Song, C. et al. (2024) Self-priming of Plk1 binding to BubR1 ensures accurate mitotic progression., Commun Biol, PMID 39516273
PXD057372 Dataset with its publication pending (from PRIDE)Dataset title: PLD3 and PLD4 synthesize lysosomal S,S-BMPPossible reference: Singh, S. et al. (2024) PLD3 and PLD4 synthesize S,S-BMP, a key phospholipid enabling lipid degradation in lysosomes., bioRxiv, PMID 38562702
PXD057369 no publication (from MassIVE)Dataset title: Development of subunit-selective proteasome substrates for Schistosoma species by MSP-MSPossible reference: Jiang, Z. et al. (2024) Development of subunit selective proteasome substrates for Schistosoma species., bioRxiv, PMID 38405969
PXD057343 Dataset with its publication pending (from PRIDE)Dataset title: Cardiac Repair using regenerating neonatal heart tissue-derived extracellular vesicles.Possible reference: Li, H. et al. (2025) Cardiac repair using regenerating neonatal heart tissue-derived extracellular vesicles., Nat Commun, PMID 39900896
PXD057333 no publication (from MassIVE)Dataset title: Proteomic characterization of Mycobacterium tuberculosis subjected to carbon starvationPossible reference: Devlin, KL. et al. (2024) Proteomic characterization of Mycobacterium tuberculosis subjected to carbon starvation., bioRxiv, PMID 39605331
PXD057331 Dataset with its publication pending (from iProX)Dataset title: A Full Window Data Independent Acquisition Method for Deeper Top-down ProteomicsPossible reference: Sun, C. et al. (2025) Full Window Data-Independent Acquisition Method for Deeper Top-Down Proteomics., Anal Chem, PMID 40119838
PXD057312 Dataset with its publication pending (from PRIDE)Dataset title: Structural basis of MICAL autoinhibitionPossible reference: Horvath, M. et al. (2024) Structural basis of MICAL autoinhibition., Nat Commun, PMID 39532862
PXD057292 Dataset with its publication pending (from PRIDE)Dataset title: Plasma proteomics in epilepsy: network-based identification of proteins associated with seizuresPossible reference: Ashtiani, SH. et al. (2025) Plasma proteomics in epilepsy: Network-based identification of proteins associated with seizures., Epilepsy Res, PMID 39626528
PXD057286 Dataset with its publication pending (from PRIDE)Dataset title: ADSL promotes autophagy and liver tumor growth through fumarate-mediated Beclin1 dimethylationPossible reference: Wang, L. et al. (2025) ADSL promotes autophagy and tumor growth through fumarate-mediated Beclin1 dimethylation., Nat Chem Biol, PMID 39881212
PXD057250 no publication (from MassIVE)Dataset title: Sticky organisms create underwater biological adhesives driven by interactions between EGF- and GlcNAc- containing polysaccharides.Possible reference: Choi, J. et al. (2025) Sticky organisms create underwater biological adhesives driven by interactions between EGF- and GlcNAc- containing polysaccharides., Nat Commun, PMID 39747843
PXD057168 Dataset with its publication pending (from iProX)Dataset title: Identification of Serum Metabolites to improve diagnostic efficacy in pulmonary embolismPossible reference: Chen, S. et al. (2025) Identification of Serum Metabolites to Improve Diagnostic Efficacy in Pulmonary Embolism., J Proteome Res, PMID 40128110
PXD057141 Dataset with its publication pending (from PRIDE)Dataset title: Proteomics revealed novel functions and drought tolerance of Arabidopsis thaliana protein kinase ATG1Possible reference: Cheng, S. et al. (2025) Proteomics revealed novel functions and drought tolerance of Arabidopsis thaliana protein kinase ATG1., BMC Biol, PMID 39984923
PXD057131 Dataset with its publication pending (from iProX)Dataset title: Vitrification of 3D Mesenchymal Stem Cells Encapsulated in GelMA Hydrogel by Microfluidics: Improved Cryosurvival, Reduced Cryoprotectant Concentration, and Enhanced Wound HealingPossible reference: Pu, Z. et al. (2025) Vitrification of 3D-MSCs encapsulated in GelMA hydrogel: Improved cryosurvival, reduced cryoprotectant concentration, and enhanced wound healing., Int J Biol Macromol, PMID 39809395
PXD057118 Dataset with its publication pending (from PRIDE)Dataset title: Deciphering functional tumor-immune crosstalk through highly multiplexed imaging and deep visual proteomicsPossible reference: Zheng, X. et al. (2025) Deciphering functional tumor-immune crosstalk through highly multiplexed imaging and deep visual proteomics., Mol Cell, PMID 39814024
PXD057090 Dataset with its publication pending (from iProX)Dataset title: RBIS regulates ribosome biogenesis to affect progression in lung adenocarcinomaPossible reference: Pan, H. et al. (2024) RBIS regulates ribosome biogenesis to affect progression in lung adenocarcinoma., J Transl Med, PMID 39722009
PXD057083 Dataset with its publication pending (from iProX)Dataset title: A stepwise mode of TGFβ-SMAD signaling and DNA methylation regulates naïve-to-primed pluripotency and differentiationPossible reference: Zhao, B. et al. (2024) A stepwise mode of TGFβ-SMAD signaling and DNA methylation regulates naïve-to-primed pluripotency and differentiation., Nat Commun, PMID 39578449
PXD057046 Dataset with its publication pending (from iProX)Dataset title: GART maintains UCK2 protein stabilityPossible reference: Sha, N. et al. (2025) The protection of UCK2 protein stability by GART maintains pyrimidine salvage synthesis for HCC growth under glucose limitation., Oncogene, PMID 39865175
PXD057044 Dataset with its publication pending (from iProX)Dataset title: Quantitative proteomic analysis based on TMT reveals different responses of Haloxylon ammodendron and Haloxylon persicum to long-term droughtPossible reference: Yang, F. et al. (2025) Quantitative proteomic analysis based on TMT reveals different responses of Haloxylon ammodendron and Haloxylon persicum to long-term drought., BMC Plant Biol, PMID 40234745
PXD057027 no publication (from MassIVE)Dataset title: Investigating the differential structural organization and gene expression regulatory networks of lamin A Ig fold domain mutants of muscular dystrophyPossible reference: Dutta, S. et al. (2024) Investigating the differential structural organization and gene expression regulatory networks of lamin A Ig fold domain mutants of muscular dystrophy., Biochem J, PMID 39509247
PXD057026 Dataset with its publication pending (from PRIDE)Dataset title: Absence of MCJ/DnaJC15 promotes brown adipose tissue thermogenesisPossible reference: Cicuéndez, B. et al. (2025) Absence of MCJ/DnaJC15 promotes brown adipose tissue thermogenesis., Nat Commun, PMID 39805849
PXD057024 Dataset with its publication pending (from PRIDE)Dataset title: Macrocycle-based PROTACs selectively degrade cyclophilin A and inhibit HIV-1 and HCVPossible reference: Newton, LS. et al. (2025) Macrocycle-based PROTACs selectively degrade cyclophilin A and inhibit HIV-1 and HCV., Nat Commun, PMID 39929804
PXD057017 Dataset with its publication pending (from PRIDE)Dataset title: Pantothenate kinase 4 controls skeletal muscle substrate metabolismPossible reference: Miranda-Cervantes, A. et al. (2025) Pantothenate kinase 4 controls skeletal muscle substrate metabolism., Nat Commun, PMID 39746949
PXD057013 no publication (from MassIVE)Dataset title: Cryo-EM structure of a lysozyme-derived amyloid fibril from hereditary amyloidosisPossible reference: Karimi-Farsijani, S. et al. (2024) Cryo-EM structure of a lysozyme-derived amyloid fibril from hereditary amyloidosis., Nat Commun, PMID 39511224
PXD056999 Dataset with its publication pending (from iProX)Dataset title: Proteomics characterizing the mechanisms of semaglutide in diabetes mice with cognitive impairmentPossible reference: Yang, Y. et al. (2025) Transcriptomics and proteomics characterizing the antioxidant mechanisms of semaglutide in diabetic mice with cognitive impairment., Int J Mol Med, PMID 39886945
PXD056993 Dataset with its publication pending (from iProX)Dataset title: Paragorgia papillata and Chrysogorgia sp. skeletal proteomePossible reference: Liang, Y. et al. (2025) The molecular basis of octocoral calcification revealed by genome and skeletal proteome analyses., Gigascience, PMID 40167990
PXD056969 Dataset with its publication pending (from jPOST)Dataset title: Proteomic Analysis Reveals Cadherin, Actin, and Focal Adhesion Molecule-Mediated Formation of Cervical Cancer SpheroidPossible reference: Molika, P. et al. (2024) Proteomic Analysis Reveals Cadherin, Actin, and Focal Adhesion Molecule-Mediated Formation of Cervical Cancer Spheroids., Cells, PMID 39682752
PXD056959 no publication (from MassIVE)Dataset title: Jade1 and the HBO1 complex are spatial-selective cofactors of Oct4Possible reference: Wu, Y. et al. (2025) Jade1 and the HBO1 complex are spatial-selective cofactors of Oct4., bioRxiv, PMID 39574712
PXD056946 Dataset with its publication pending (from PRIDE)Dataset title: The dual life of disordered lysine-rich domains of snoRNPs in rRNA modification and nucleolar compactionPossible reference: Dominique, C. et al. (2024) The dual life of disordered lysine-rich domains of snoRNPs in rRNA modification and nucleolar compaction., Nat Commun, PMID 39482307
PXD056916 no publication (from MassIVE)Dataset title: A single amino acid in the Salmonella effector SarA/SteE triggers supraphysiological activation of STAT3 for anti-inflammatory target gene expressionPossible reference: Gaggioli, MR. et al. (2024) A single amino acid in the Salmonella effector SarA/SteE triggers supraphysiological activation of STAT3 for anti-inflammatory target gene expression., bioRxiv, PMID 38405869
PXD056884 Dataset with its publication pending (from PRIDE)Dataset title: Carbonic anhydrase 2 facilitates sorafenib resistance by counteracting MCT4-mediated intracellular pH dysregulation in hepatocellular carcinomaPossible reference: Lu, H. et al. (2024) Carbonic anhydrase 2 facilitates sorafenib resistance by counteracting MCT4-mediated intracellular pH dysregulation in HCC., Cell Rep, PMID 39607826
PXD056874 no publication (from MassIVE)Dataset title: Spindle integrity is regulated by a phospho-dependent interaction between the Ndc80 and Dam1 kinetochore complexes Possible reference: Nelson, CR. et al. (2025) Spindle integrity is regulated by a phospho-dependent interaction between the Ndc80 and Dam1 kinetochore complexes., PLoS Genet, PMID 40184422
PXD056871 Dataset with its publication pending (from PRIDE)Dataset title: Nanocarrier imaging at single-cell resolution across entire mouse bodies with deep learningPossible reference: Luo, J. et al. (2025) Nanocarrier imaging at single-cell resolution across entire mouse bodies with deep learning., Nat Biotechnol, PMID 39809933
PXD056834 Dataset with its publication pending (from iProX)Dataset title: IGFBP2 and IGFBP4 Interact to Activate Complement Pathway in Diabetic NephropathyPossible reference: Liang, J. et al. (2025) IGFBP2 and IGFBP4 interact to activate complement pathway in diabetic kidney disease., Ren Fail, PMID 39806768
PXD056793 Wen, Bo, Chris Hsu, Wen-Feng Zeng, Michael Riffle, Alexis Chang, Miranda Mudge, Brook L. Nunn, et al. “Carafe Enables High Quality in Silico Spectral Library Generation for Data-Independent Acquisition Proteomics.†bioRxiv, 2024.10.15.618504. (from PanoramaPublic)Dataset title: Carafe enables high quality in silico spectral library generation for data-independent acquisition proteomicsPossible reference: Wen, B. et al. (2024) Carafe enables high quality in silico spectral library generation for data-independent acquisition proteomics., bioRxiv, PMID 39463980
PXD056792 no publication (from MassIVE)Dataset title: Barley grain proteome assessment using multi-environment trial data and machine learningPossible reference: Ramanan, M. et al. (2024) Barley Grain Proteome Assessment Using Multi-Environment Trial Data and Machine Learning., J Agric Food Chem, PMID 39536264
PXD056791 Dataset with its publication pending (from PRIDE)Dataset title: Nuclear GTPSCS functions as a lactyl-CoA synthetase to promote histone lactylationPossible reference: Liu, R. et al. (2025) Nuclear GTPSCS functions as a lactyl-CoA synthetase to promote histone lactylation and gliomagenesis., Cell Metab, PMID 39642882
PXD056790 Dataset with its publication pending (from PRIDE)Dataset title: Remodeling of the neutrophil proteome upon exposure to Pseudomonas aeruginosa biofilmsPossible reference: Rizakos, T. et al. (2025) Remodeling of the neutrophil proteome upon exposure to Pseudomonas aeruginosa biofilms., Microbiol Resour Announc, PMID 40079579
PXD056756 Dataset with its publication pending (from PRIDE)Dataset title: Structure and dynamics of GAD65 and its interaction with the autoimmune polyendocrine syndrome type 2-associated autoantibody b96.11.Possible reference: Ständer, SHD. et al. (2025) Structure and dynamics of GAD65 in complex with an autoimmune polyendocrine syndrome type 2-associated autoantibody., Nat Commun, PMID 40055307
PXD056746 Dataset with its publication pending (from iProX)Dataset title: SCASP-PTM multiple PTM enrichment methodPossible reference: Lin, ZP. et al. (2025) Comprehensive PTM profiling with SCASP-PTM uncovers mechanisms of p62 degradation and ALDOA-mediated tumor progression., Cell Rep, PMID 40186868
PXD056674 Dataset with its publication pending (from PRIDE)Dataset title: JOSD2 inhibits angiotensin II-induced vascular remodeling by deubiquitinating and stabilizing SMAD7Possible reference: Shen, SR. et al. (2025) JOSD2 inhibits angiotensin II-induced vascular remodeling by deubiquitinating and stabilizing SMAD7., Acta Pharmacol Sin, PMID 39833306
PXD056630 Dataset with its publication pending (from iProX)Dataset title: Integrated proteomics and lipidomics analysis of hippocampus to reveal the metabolic landscape of epilepsyPossible reference: Chen, Y. et al. (2025) Integrated Proteomics and Lipidomics Analysis of Hippocampus to Reveal the Metabolic Landscape of Epilepsy., ACS Omega, PMID 40092809
PXD056595 Dataset with its publication pending (from iProX)Dataset title: The critical role of MLKL in hemorrhagic stroke and the therapeutic potential of its associated protein networkPossible reference: Wang, Y. et al. (2024) The critical role of MLKL in hemorrhagic stroke and the therapeutic potential of its associated protein network., Front Cell Dev Biol, PMID 39902279
PXD056549 Dataset with its publication pending (from jPOST)Dataset title: Structural Analysis of the 20S Proteasome using Native Mass Spectrometry and Ultraviolet PhotodissociationPossible reference: Walker, JN. et al. (2024) Structural Analysis of the 20S Proteasome Using Native Mass Spectrometry and Ultraviolet Photodissociation., J Proteome Res, PMID 39475212
PXD056543 Dataset with its publication pending (from PRIDE)Dataset title: PSKH1 kinase activity is differentially modulated via allosteric binding of Ca2+ sensor proteinsPossible reference: Horne, CR. et al. (2025) PSKH1 kinase activity is differentially modulated via allosteric binding of Ca2+ sensor proteins., Proc Natl Acad Sci U S A, PMID 39964718
PXD056513 no publication (from MassIVE)Dataset title: Distinct Perception Mechanisms of BACH1 Quaternary Structure Degrons by Two F-box Proteins under Oxidative StressPossible reference: Cao, S. et al. (2024) Distinct Perception Mechanisms of BACH1 Quaternary Structure Degrons by Two F-box Proteins under Oxidative Stress., bioRxiv, PMID 38895309
PXD056507 Dataset with its publication pending (from PRIDE)Dataset title: Shatavari Supplementation During Eight Weeks of Resistance Training Increases Training Load, Enhances Skeletal Muscle Contractility and Alters the Skeletal Muscle Proteome in Older Women.Possible reference: Greed, E. et al. (2024) Shatavari supplementation during eight weeks of resistance training increases training load, enhances skeletal muscle contractility and alters the skeletal muscle proteome in older women., Front Nutr, PMID 39834460
PXD056506 no publication (from MassIVE)Dataset title: Sirtuin-5 is recruited to hepatic peroxisomes in mice fed dodecanedioic acid but has little impact on the peroxisomal succinylomePossible reference: Zhang, Y. et al. (2024) Sirtuin-5 Is Recruited to Hepatic Peroxisomes in Mice Fed Dodecanedioic Acid but Has Little Impact on the Peroxisomal Succinylome., Biomolecules, PMID 39766215
PXD056483 no publication (from MassIVE)Dataset title: PU.1 Eviction at Lymphocyte-Specific Chromatin Domains Mediates Glucocorticoid Response in Acute Lymphoblastic LeukemiaPossible reference: Beck, D. et al. (2024) PU.1 eviction at lymphocyte-specific chromatin domains mediates glucocorticoid response in acute lymphoblastic leukemia., Nat Commun, PMID 39516193
PXD056472 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic variation in the oral secretion of Spodoptera exigua and Spodoptera littoralis larvae in response to different food sourcesPossible reference: García-Marín, E. et al. (2025) Proteomic Variation in the Oral Secretion of Spodoptera exigua and Spodoptera littoralis Larvae in Response to Different food Sources., J Chem Ecol, PMID 39853486
PXD056410 Dataset with its publication pending (from jPOST)Dataset title: Longitudinal analysis of B- and T-cell responses to SARS-CoV-2 recombinant S-protein vaccine S-268019-b in phase 1/2 priming and booster studyPossible reference: Fujitani, M. et al. (2025) Longitudinal analysis of immune responses to SARS-CoV-2 recombinant vaccine S-268019-b in phase 1/2 prime-boost study., Front Immunol, PMID 40109335
PXD056408 Dataset with its publication pending (from jPOST)Dataset title: FMRP immunoprecipitation using human HEK293T cellsPossible reference: Ma, Y. et al. (2016) CMP‑N‑acetylneuraminic acid synthetase interacts with fragile X related protein 1., Mol Med Rep, PMID 27357083
PXD056407 no publication (from MassIVE)Dataset title: Establishing a Top-Down Proteomics Platform on a Time-of-Flight Instrument with Electron-Activated DissociationPossible reference: Searfoss, RM. et al. (2025) Establishing a Top-Down Proteomics Platform on a Time-of-Flight Instrument with Electron-Activated Dissociation., J Proteome Res, PMID 39957600
PXD056402 no publication (from MassIVE)Dataset title: Post-transcriptional regulation of Dufours gland reproductive signals in bumble bees Possible reference: Derstine, N. et al. (2024) Post-transcriptional regulation of Dufour's gland reproductive signals in bumble bees., BMC Genomics, PMID 39420273
PXD056399 Dataset with its publication pending (from PRIDE)Dataset title: Structural variation of types IV-A1- and IV-A3-mediated CRISPR interferencePossible reference: ÄŒepaitÄ—, R. et al. (2024) Structural variation of types IV-A1- and IV-A3-mediated CRISPR interference., Nat Commun, PMID 39468082
PXD056392 Dataset with its publication pending (from PRIDE)Dataset title: VARS1 overexpression in hepatocellular carcinoma cell linesPossible reference: Hermán-Sánchez, N. et al. (2025) Quantitative proteomic analysis unveils a critical role of VARS1 in hepatocellular carcinoma aggressiveness through the modulation of MAGI1 expression., Mol Cancer, PMID 39810176
PXD056390 Dataset with its publication pending (from PRIDE)Dataset title: A chemical-genetic system to rapidly inhibit the PP2A-B56 phosphatasePossible reference: Allan, LA. et al. (2025) A chemical-genetic system to rapidly inhibit the PP2A-B56 phosphatase reveals a role at metaphase kinetochores., Nat Commun, PMID 40157924
PXD056373 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic Analysis of Extracellular Vesicles Derived from Human Pluripotent Stem CellsPossible reference: La Greca, A. et al. (2018) Extracellular vesicles from pluripotent stem cell-derived mesenchymal stem cells acquire a stromal modulatory proteomic pattern during differentiation., Exp Mol Med, PMID 30201949
PXD056364 Dataset with its publication pending (from PRIDE)Dataset title: Dysregulation of mTOR signaling is a converging mechanism in lissencephalyPossible reference: Zhang, C. et al. (2025) Dysregulation of mTOR signalling is a converging mechanism in lissencephaly., Nature, PMID 39743596
PXD056358 no publication (from MassIVE)Dataset title: Decoding Microbial Plastic Colonisation: Multi-Omic Insights into the Fast-Evolving Dynamics of Early-Stage BiofilmsPossible reference: Lee, CE. et al. (2025) Decoding Microbial Plastic Colonisation: Multi-Omic Insights Into the Fast-Evolving Dynamics of Early-Stage Biofilms., Proteomics, PMID 39760247
PXD056351 Dataset with its publication pending (from iProX)Dataset title: AMPK-regulated glycerol excretion maintains metabolic crosstalk between reductive and energetic stressPossible reference: Zhai, X. et al. (2025) AMPK-regulated glycerol excretion maintains metabolic crosstalk between reductive and energetic stress., Nat Cell Biol, PMID 39747579
PXD056344 Dataset with its publication pending (from PRIDE)Dataset title: β-Carotene alleviates substrate inhibition caused by asymmetric cooperativityPossible reference: Liao, J. et al. (2025) β-Carotene alleviates substrate inhibition caused by asymmetric cooperativity., Nat Commun, PMID 40157902
PXD056330 Dataset with its publication pending (from PRIDE)Dataset title: Efn1 (SPBPB2B2.06c) and Efn2 (SPAC1039.02) are extracellular 5'-nucleotidases induced during the fission yeast response to phosphate starvationPossible reference: Innokentev, A. et al. (2025) Efn1 and Efn2 are extracellular 5'-nucleotidases induced during the fission yeast response to phosphate starvation., mBio, PMID 39660919
PXD056328 Dataset with its publication pending (from PRIDE)Dataset title: Structural recognition and stabilization of tyrosine hydroxylase by the J-domain protein DNAJC12Possible reference: Tai, MDS. et al. (2025) Structural recognition and stabilization of tyrosine hydroxylase by the J-domain protein DNAJC12., Nat Commun, PMID 40113792
PXD056316 Dataset with its publication pending (from PRIDE)Dataset title: Protein ‘Purity’, Proteoforms, and the Albuminome: Critical Observations on Proteome and Systems ComplexityPossible reference: Woodland, B. et al. (2024) Protein "purity," proteoforms, and the albuminome: critical observations on proteome and systems complexity., Front Cell Dev Biol, PMID 39720005
PXD056313 Dataset with its publication pending (from jPOST)Dataset title: Reprogramming of flagellin receptor responses with surrogate ligandsPossible reference: Lee, DH. et al. (2024) Reprogramming of flagellin receptor responses with surrogate ligands., Nat Commun, PMID 39532858
PXD056294 Dataset with its publication pending (from jPOST)Dataset title: Quantitative Proteomic Analysis of Residual Host Cell Protein Retention Across Adeno- Associated Virus (AAV) Affinity ChromatographyPossible reference: Leibiger, TM. et al. (2024) Quantitative proteomic analysis of residual host cell protein retention across adeno-associated virus affinity chromatography., Mol Ther Methods Clin Dev, PMID 39691383
PXD056240 no publication (from MassIVE)Dataset title: The Role of the Co-Chaperone DNAJB11 in Polycystic Kidney Disease: Molecular Mechanisms and Cellular Origin of Cyst FormationPossible reference: Busch, T. et al. (2024) The role of the co-chaperone DNAJB11 in polycystic kidney disease: Molecular mechanisms and cellular origin of cyst formation., FASEB J, PMID 39530576
PXD056219 Dataset with its publication pending (from iProX)Dataset title: Exploring Heparin’s Protective Mechanism Against AGEs Induced Endothelial InjuryPossible reference: Shi, J. et al. (2024) Exploring heparin's protective mechanism against AGEs induced endothelial injury., iScience, PMID 39493878
PXD056214 Dataset with its publication pending (from iProX)Dataset title: Proteomic of anlotinib in TP53-mutated non-small cell lung cancerPossible reference: Jiang, JM. et al. (2025) Proteomic insights into the molecular mechanism of anlotinib inhibition in TP53-mutated non-small cell lung cancer., J Proteomics, PMID 40113013
PXD056205 no publication (from MassIVE)Dataset title: Benchmarking Peptide Spectral Library Search DatasetPossible reference: Guthals, A. et al. (2015) The generating function approach for Peptide identification in spectral networks., J Comput Biol, PMID 25423621
PXD056186 Dataset with its publication pending (from PRIDE)Dataset title: An eRNA Transcription Checkpoint For Diverse Signal-dependent Enhancer Activation ProgramsPossible reference: Wang, L. et al. (2025) An eRNA transcription checkpoint for diverse signal-dependent enhancer activation programs., Nat Genet, PMID 40186057
PXD056184 Dataset with its publication pending (from PRIDE)Dataset title: Validation of potential growth-related proteins in chick vitreous during emmetropization using targeted-based proteomics (MRMHR)Possible reference: Cheung, JK. et al. (2024) Identification of Potential Growth-Related Proteins in Chick Vitreous during Emmetropization Using SWATH-MS and Targeted-Based Proteomics (MRMHR)., Int J Mol Sci, PMID 39408973
PXD056178 no publication (from MassIVE)Dataset title: Unveiling signaling pathways inducing MHC class II expression in neutrophilsPossible reference: Forrer, P. et al. (2024) Unveiling signaling pathways inducing MHC class II expression in neutrophils., Front Immunol, PMID 39403371
PXD056173 Dataset with its publication pending (from PRIDE)Dataset title: Proximity-based activation of AURORA A by MPS1 potentiates error correctionPossible reference: Leça, N. et al. (2024) Proximity-based activation of AURORA A by MPS1 potentiates error correction., bioRxiv, PMID 38948877
PXD056139 Dataset with its publication pending (from iProX)Dataset title: Acetylated 4D-Label-free quantitative proteomicsPossible reference: Wu, S. et al. (2022) Protective Mechanism of Leucine and Isoleucine against H2O2-Induced Oxidative Damage in Bovine Mammary Epithelial Cells., Oxid Med Cell Longev, PMID 35360198
PXD056097 Dataset with its publication pending (from PRIDE)Dataset title: Validation of potential growth-related proteins in chick vitreous during emmetropization using targeted-based proteomics (MRMHR)Possible reference: Cheung, JK. et al. (2024) Identification of Potential Growth-Related Proteins in Chick Vitreous during Emmetropization Using SWATH-MS and Targeted-Based Proteomics (MRMHR)., Int J Mol Sci, PMID 39408973
PXD056068 no publication (from MassIVE)Dataset title: An atlas of RNA-dependent proteins in cell division reveals the riboregulation of mitotic protein-protein interactionsPossible reference: Rajagopal, V. et al. (2024) An atlas of RNA-dependent proteins in cell division reveals the riboregulation of mitotic protein-protein interactions., bioRxiv, PMID 39386702
PXD056009 Dataset with its publication pending (from PRIDE)Dataset title: Development of mirror-image monobodies targeting the oncogenic BCR::ABL1 kinasePossible reference: Schmidt, N. et al. (2024) Development of mirror-image monobodies targeting the oncogenic BCR::ABL1 kinase., Nat Commun, PMID 39715735
PXD056006 Dataset with its publication pending (from PRIDE)Dataset title: Brucella suis S2 strain inhibits IRE1/Caspase-12/Caspase-3 pathway-mediated apoptosis of microglia HMC3 by affecting the ubiquitination of CALRPossible reference: Wang, Z. et al. (2025) Brucella suis S2 strain inhibits IRE1/caspase-12/caspase-3 pathway-mediated apoptosis of microglia HMC3 by affecting the ubiquitination of CALR., mSphere, PMID 40019270
PXD055965 Dataset with its publication pending (from PRIDE)Dataset title: Multi tissue proteomic analysis of cold exposurePossible reference: Gillette, MA. et al. (2020) Proteogenomic Characterization Reveals Therapeutic Vulnerabilities in Lung Adenocarcinoma., Cell, PMID 32649874
PXD055963 Dataset with its publication pending (from jPOST)Dataset title: Comparative Proteomic Analysis of Astrocytoma Tissues from Patients with and without SeizuresPossible reference: Khaosuwan, T. et al. (2025) Comparative proteomic analysis of astrocytoma tissues from patients with and without seizures., Sci Rep, PMID 39849075
PXD055945 no publication (from MassIVE)Dataset title: Investigation of natural dyes and taxonomic identification of fibers used in Chancay textiles by vibrational spectroscopy and mass spectrometryPossible reference: Diaz-Granados, KS. et al. (2025) Investigation of Natural Dyes and Taxonomic Identification of Fibers Used in Chancay Textiles by Vibrational Spectroscopy and Mass Spectrometry., J Proteome Res, PMID 39752566
PXD055943 Dataset with its publication pending (from PRIDE)Dataset title: Combining quantitative proteomics and interactomics for a deeper insight into molecular differences between human cell linesPossible reference: Bakhtina, AA. et al. (2024) Combining quantitative proteomics and interactomics for a deeper insight into molecular differences between human cell lines., bioRxiv, PMID 38915502
PXD055939 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic profiling of the hypothalamic arcuate nucleus of bull calves offered either a high or moderate plane of nutrition in early lifePossible reference: Byrne, CJ. et al. (2018) Plane of nutrition before and after 6 months of age in Holstein-Friesian bulls: I. Effects on performance, body composition, age at puberty, and postpubertal semen production., J Dairy Sci, PMID 29428748
PXD055937 Dataset with its publication pending (from PRIDE)Dataset title: USP7 protects TFEB from proteasome-mediated degradationPossible reference: Keshri, S. et al. (2024) USP7 protects TFEB from proteasome-mediated degradation., Cell Rep, PMID 39412987
PXD055917 Dataset with its publication pending (from PRIDE)Dataset title: Selective Labeling of Tyrosine Residues in Proteins: Insights from PTAD Labeling and Tandem Mass Spectrometry AnalysisPossible reference: Zacharias, AO. et al. (2025) Selective labeling of tyrosine residues in proteins: insights from PTAD labeling and tandem mass spectrometry analysis., Mol Omics, PMID 39717905
PXD055898 Dataset with its publication pending (from PRIDE)Dataset title: Structure of a Gcn2 dimer in complex with the large 60S ribosomal subunitPossible reference: Paternoga, H. et al. (2025) Structure of a Gcn2 dimer in complex with the large 60S ribosomal subunit., Proc Natl Acad Sci U S A, PMID 40198700
PXD055876 Dataset with its publication pending (from PRIDE)Dataset title: Identification and functional characterization of a fructose-inducible phosphotransferase system in Azospirillum brasilense Sp7Possible reference: Rai, S. et al. (2025) Identification and functional characterization of a fructose-inducible phosphotransferase system in Azospirillum brasilense Sp7., Appl Environ Microbiol, PMID 39817736
PXD055867 Dataset with its publication pending (from PRIDE)Dataset title: Dipeptidyl peptidase DPF-3 is a gatekeeper of microRNA Argonaute compensation in animalsPossible reference: Harvey, LM. et al. (2025) Dipeptidyl peptidase DPF-3 is a gatekeeper of microRNA Argonaute compensation in animals., Nat Commun, PMID 40108168
PXD055854 Dataset with its publication pending (from PRIDE)Dataset title: Deep learning to decode sites of RNA translation in normal and cancerous tissuesPossible reference: Clauwaert, J. et al. (2024) Deep learning to decode sites of RNA translation in normal and cancerous tissues., bioRxiv, PMID 38585907
PXD055822 no publication (from MassIVE)Dataset title: Impaired biogenesis of basic proteins impacts multiple hallmarks of the aging brainPossible reference: Di Fraia, D. et al. (2024) Impaired biogenesis of basic proteins impacts multiple hallmarks of the aging brain., bioRxiv, PMID 38260253
PXD055814 Dataset with its publication pending (from PRIDE)Dataset title: C-terminal amides mark proteins for degradation via SCF/FBXO31 – CTAP discoveryPossible reference: Muhar, MF. et al. (2025) C-terminal amides mark proteins for degradation via SCF-FBXO31., Nature, PMID 39880951
PXD055780 no publication (from MassIVE)Dataset title: MSIght: A Modular Platform for Improved Confidence in Global, Untargeted Mass Spectrometry Imaging AnnotationPossible reference: Fields, L. et al. (2025) MSIght: A Modular Platform for Improved Confidence in Global, Untargeted Mass Spectrometry Imaging Annotation., J Proteome Res, PMID 40197022
PXD055775 Dataset with its publication pending (from PRIDE)Dataset title: Phosphorylation of a nuclear condensate regulates cohesion and mRNA retentionPossible reference: McIntyre, ABR. et al. (2025) Phosphorylation of a nuclear condensate regulates cohesion and mRNA retention., Nat Commun, PMID 39755675
PXD055753 no publication (from MassIVE)Dataset title: Treponema pallidum SS14 global proteomicsPossible reference: Campo, JJ. et al. (2024) A novel pan-proteome array for high-throughput profiling of the humoral response to Treponema pallidum., iScience, PMID 39262771
PXD055742 Dataset with its publication pending (from PRIDE)Dataset title: Discovery of a novel antifungal compound, ilicicolin K, through genetic activation of the ilicicolin biosynthetic pathway in Trichoderma reeseiPossible reference: Burger, I. et al. (2025) Discovery of the antifungal compound ilicicolin K through genetic activation of the ilicicolin biosynthetic pathway in Trichoderma reesei., Biotechnol Biofuels Bioprod, PMID 40069746
PXD055738 Dataset with its publication pending (from PRIDE)Dataset title: Ckmt2 for Evaluating Reperfusion Injury in Acute Myocardial InfarctionPossible reference: Lang, A. et al. (2024) Mitochondrial Creatine Kinase 2 (Ckmt2) as a Plasma-Based Biomarker for Evaluating Reperfusion Injury in Acute Myocardial Infarction., Biomedicines, PMID 39457679
PXD055728 Dataset with its publication pending (from iProX)Dataset title: Comparative proteomics analysis of the WT and ZmHSFA2d knockout linePossible reference: Tripathi, LP. et al. (2012) Proteomic analysis of hepatitis C virus (HCV) core protein transfection and host regulator PA28γ knockout in HCV pathogenesis: a network-based study., J Proteome Res, PMID 22646850
PXD055723 Dataset with its publication pending (from iProX)Dataset title: LC-MS/MS-based metabolomics and proteomics reveal the intervention of Kangnian Decoction on the postoperative intestinal adhesion of ratsPossible reference: Jin, L. et al. (2024) LC-MS/MS-based metabolomics and proteomics reveal the intervention of Kangnian decoction on the postoperative intestinal adhesion of rats., Front Pharmacol, PMID 39351093
PXD055631 Dataset with its publication pending (from PRIDE)Dataset title: A network of interacting ciliary tip proteins with opposing activities imparts slow and processive microtubule growthPossible reference: Saunders, HAJ. et al. (2025) A network of interacting ciliary tip proteins with opposing activities imparts slow and processive microtubule growth., Nat Struct Mol Biol, PMID 39856351
PXD055609 Dataset with its publication pending (from PRIDE)Dataset title: Immunogenic noncoding cryptic peptides dominate the antigenic landscape of ovarian cancerPossible reference: Raja, R. et al. (2025) Immunogenic cryptic peptides dominate the antigenic landscape of ovarian cancer., Sci Adv, PMID 39970218
PXD055605 Dataset with its publication pending (from PRIDE)Dataset title: Interaction proteomics of the human solute carrier (SLC) transporter superfamilyPossible reference: Clémençon, B. et al. (2018) Establishment of a novel microscale thermophoresis ligand-binding assay for characterization of SLC solute carriers using oligopeptide transporter PepT1 (SLC15 family) as a model system., J Pharmacol Toxicol Methods, PMID 29580877
PXD055592 Dataset with its publication pending (from PRIDE)Dataset title: Parallel genome-scale CRISPR-Cas9 screens uncouple human pluripotent stem cell identity versus fitnessPossible reference: Rosen, BP. et al. (2024) Parallel genome-scale CRISPR-Cas9 screens uncouple human pluripotent stem cell identity versus fitness., bioRxiv, PMID 37205540
PXD055547 Dataset with its publication pending (from PRIDE)Dataset title: Maximizing immunopeptidomics-based bacterial epitope discovery by rescoring and integrating the results of multiple search enginesPossible reference: Willems, P. et al. (2025) Maximizing Immunopeptidomics-Based Bacterial Epitope Discovery by Multiple Search Engines and Rescoring., J Proteome Res, PMID 40080147
PXD055531 Dataset with its publication pending (from iProX)Dataset title: Genome-wide synthetic lethal screen identifies SRM as a target that enhances erdafitinib efficacy in FGFR-mutant bladder cancerPossible reference: Yu, Y. et al. (2025) A Genome-Wide Synthetic Lethal Screen Identifies Spermidine Synthase as a Target to Enhance Erdafitinib Efficacy in FGFR-Mutant Bladder Cancer., Cancer Res, PMID 40126530
PXD055527 Dataset with its publication pending (from iProX)Dataset title: Spatiotemporal Proteomic and Transcriptomic Landscape of DAT+ Dopaminergic Neurons Development and FunctionPossible reference: Zhao, H. et al. (2025) Spatiotemporal proteomic and transcriptomic landscape of DAT+ dopaminergic neurons development and function., iScience, PMID 40201125
PXD055518 Dataset with its publication pending (from PRIDE)Dataset title: C-terminal amides mark proteins for degradation via SCF/FBXO31Possible reference: Muhar, MF. et al. (2025) C-terminal amides mark proteins for degradation via SCF-FBXO31., Nature, PMID 39880951
PXD055453 Dataset with its publication pending (from iProX)Dataset title: Clinical response characteristics of salivary proteins in the management strategy of diabetes-associated periodontitisPossible reference: Jia, S. et al. (2025) Clinical Response Characteristics of Salivary Proteins in the Management Strategy of Diabetes-Associated Periodontitis., J Proteome Res, PMID 40008981
PXD055452 Dataset with its publication pending (from iProX)Dataset title: 4D-DIA-based quantitative proteomic analysis reveals the involvement of TRPV2 protein in duck Tembusu virus replicationPossible reference: Chen, J. et al. (2024) 4D-DIA-Based Quantitative Proteomic Analysis Reveals the Involvement of TRPV2 Protein in Duck Tembusu Virus Replication., Viruses, PMID 39772141
PXD055444 Dataset with its publication pending (from iProX)Dataset title: Proteomic analysis of the effects of Shenzhu Tiaopi granules on model rats with type 2 diabetes mellitusPossible reference: Zhao, JD. et al. (2025) Proteomic Analysis of the Effects of Shenzhu Tiaopi Granules on Model Rats with Type 2 Diabetes Mellitus., Diabetes Metab Syndr Obes, PMID 40026899
PXD055438 Dataset with its publication pending (from iProX)Dataset title: phosphorylation site of ATG101Possible reference: Nagy, P. et al. (2014) Atg17/FIP200 localizes to perilysosomal Ref(2)P aggregates and promotes autophagy by activation of Atg1 in Drosophila., Autophagy, PMID 24419107
PXD055437 Dataset with its publication pending (from iProX)Dataset title: EtEC81 reprograms alternative splicingPossible reference: Yu, H. et al. (2025) The Exserohilum turcicum effector EtEC81 reprograms alternative splicing in maize and activates immunity., Cell Rep, PMID 40173045
PXD055431 Dataset with its publication pending (from iProX)Dataset title: m5C methylome, transcriptome and proteome of sysnechocystisPossible reference: Zuo, S. et al. (2023) NSUN2-mediated m5 C RNA methylation dictates retinoblastoma progression through promoting PFAS mRNA stability and expression., Clin Transl Med, PMID 37228185
PXD055376 Dataset with its publication pending (from PRIDE)Dataset title: Nucleus-Translocated GCLM Promotes Chemoresistance in Colorectal Cancer through a Moonlighting FunctionPossible reference: Lin, JF. et al. (2025) Nucleus-translocated GCLM promotes chemoresistance in colorectal cancer through a moonlighting function., Nat Commun, PMID 39747101
PXD055366 Dataset with its publication pending (from PRIDE)Dataset title: HBV remodels PP2A complexes to rewire kinase signaling in hepatocellular carcinomaPossible reference: Turnham, RE. et al. (2025) HBV Remodels PP2A Complexes to Rewire Kinase Signaling in Hepatocellular Carcinoma., Cancer Res, PMID 39652575
PXD055311 Dataset with its publication pending (from jPOST)Dataset title: Age-related TFEB Downregulation in Proximal Tubules Causes Systemic Metabolic Disorders and Occasional Apolipoprotein A4-related AmyloidosisPossible reference: Nakamura, J. et al. (2024) Age-related TFEB downregulation in proximal tubules causes systemic metabolic disorders and occasional apolipoprotein A4-related amyloidosis., JCI Insight, PMID 39699959
PXD055304 no publication (from MassIVE)Dataset title: Altering translation allows E. coli to overcome chemically stabilized G-quadruplexesPossible reference: Cueny, RR. et al. (2024) Altering translation allows E. coli to overcome chemically stabilized G-quadruplexes., bioRxiv, PMID 39185182
PXD055262 Dataset with its publication pending (from PRIDE)Dataset title: BTN2A1 Targeting Reprograms M2-like Macrophages and TAMs via SYK and MAPK SignalingPossible reference: Kerneur, C. et al. (2024) BTN2A1 targeting reprograms M2-like macrophages and TAMs via SYK and MAPK signaling., Cell Rep, PMID 39325623
PXD055227 Dataset with its publication pending (from PRIDE)Dataset title: Temporal control of acute protein aggregate turnover by UBE3C and NRF1-dependent proteasomal pathwaysPossible reference: Hickey, KL. et al. (2024) Temporal control of acute protein aggregate turnover by UBE3C and NRF1-dependent proteasomal pathways., bioRxiv, PMID 39282280
PXD055203 Dataset with its publication pending (from PRIDE)Dataset title: A Proteogenomic Analysis of Cervical Cancer Reveals Therapeutic and Biological InsightsPossible reference: Yu, J. et al. (2024) A proteogenomic analysis of cervical cancer reveals therapeutic and biological insights., Nat Commun, PMID 39578447
PXD055179 Dataset with its publication pending (from PRIDE)Dataset title: Heparin-binding human plasma proteinsPossible reference: Bjarnadóttir, SG. et al. (2014) Affinity chromatography, two-dimensional electrophoresis, adapted immunodepletion and mass spectrometry used for detection of porcine and piscine heparin-binding human plasma proteins., J Chromatogr B Analyt Technol Biomed Life Sci, PMID 24316520
PXD055174 Dataset with its publication pending (from PRIDE)Dataset title: Exploring the Biological Mechanisms of Severe COVID-19 in the Elderly: Insights from an Aged MousePossible reference: Ma, L. et al. (2025) Exploring the biological mechanisms of severe COVID-19 in the elderly: Insights from an aged mouse model., Virulence, PMID 40228062
PXD055131 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic analysis of the eutopic endometrium of patients with internal or external ademomyosisPossible reference: Lu, Q. et al. (2020) T-cadherin inhibits invasion and migration of endometrial stromal cells in endometriosis., Hum Reprod, PMID 31886853
PXD055127 Dataset with its publication pending (from iProX)Dataset title: Snake (Elaphe taeniura) IgY was truncated at N338 of the IgY heavy chain constant regionPossible reference: Zhang, M. et al. (2025) Post-translational cleavage generates truncated IgY forms in the snake Elaphe taeniura., Zool Res, PMID 39973137
PXD055082 no publication (from MassIVE)Dataset title: mRNA psi profiling using nanopore DRS reveals cell type-specific pseudouridylation Possible reference: McCormick, CA. et al. (2024) mRNA psi profiling using nanopore DRS reveals cell type-specific pseudouridylation., bioRxiv, PMID 38766185
PXD055061 Dataset with its publication pending (from PRIDE)Dataset title: the interactome of H3K4me3 in RAW264.7 cellsPossible reference: Wang, Y. et al. (2025) Development of nucleus-targeted histone-tail-based photoaffinity probes to profile the epigenetic interactome in native cells., Nat Commun, PMID 39762271
PXD055058 Dataset with its publication pending (from PRIDE)Dataset title: the interactome of H3K4me3 in HeLa cellsPossible reference: Wang, Y. et al. (2025) Development of nucleus-targeted histone-tail-based photoaffinity probes to profile the epigenetic interactome in native cells., Nat Commun, PMID 39762271
PXD055026 Dataset with its publication pending (from iProX)Dataset title: Phosphoproteomics Delineates Hepatocellular Carcinoma Subtypes and Pinpoints Therapeutic TargetsPossible reference: Zhang, Z. et al. (2025) Phosphoproteomics delineates hepatocellular carcinoma subtypes and pinpoints therapeutic targets., Hepatology, PMID 39887258
PXD055025 Dataset with its publication pending (from iProX)Dataset title: Proteomic Analysis Reveals Differential Protein Expression in Early-Onset Preeclampsia PatientsPossible reference: Li, H. et al. (2015) Differential Proteomic Analysis of Syncytiotrophoblast Extracellular Vesicles from Early-Onset Severe Preeclampsia, using 8-Plex iTRAQ Labeling Coupled with 2D Nano LC-MS/MS., Cell Physiol Biochem, PMID 26113202
PXD055023 Dataset with its publication pending (from jPOST)Dataset title: Characterization of Equine Platelet Lysate for Nebulization in the HorsePossible reference: Egli, P. et al. (2024) Pilot study characterizing a single pooled preparation of equine platelet lysate for nebulization in the horse., Front Vet Sci, PMID 39726585
PXD055018 Dataset with its publication pending (from jPOST)Dataset title: PRMT1-mediated methylation regulates MLL2 stability and gene expressionPossible reference: An, D. et al. (2025) PRMT1-mediated methylation regulates MLL2 stability and gene expression., Nucleic Acids Res, PMID 39698834
PXD055003 Dataset with its publication pending (from PRIDE)Dataset title: Human Papillomavirus-encoded Circular RNA circE7 Promotes Immune Evasion in Head and Neck Squamous Cell CarcinomaPossible reference: Ge, J. et al. (2024) Human papillomavirus-encoded circular RNA circE7 promotes immune evasion in head and neck squamous cell carcinoma., Nat Commun, PMID 39366979
PXD054976 no publication (from MassIVE)Dataset title: Biofunctionalized dissolvable hydrogel microbeads enable efficient characterization of native protein complexesPossible reference: Shao, X. et al. (2024) Biofunctionalized dissolvable hydrogel microbeads enable efficient characterization of native protein complexes., Nat Commun, PMID 39366952
PXD054966 no publication (from MassIVE)Dataset title: A human gut bacterium antagonizes neighboring bacteria by altering their protein folding abilityPossible reference: Lim, B. et al. (2025) A human gut bacterium antagonizes neighboring bacteria by altering their protein-folding ability., Cell Host Microbe, PMID 39909037
PXD054944 Dataset with its publication pending (from iProX)Dataset title: Enhanced sensitivity and scalability with a Chip-Tip workflow enables deep single-cell proteomicsPossible reference: Ye, Z. et al. (2025) Enhanced sensitivity and scalability with a Chip-Tip workflow enables deep single-cell proteomics., Nat Methods, PMID 39820750
PXD054928 Dataset with its publication pending (from PRIDE)Dataset title: Control of cell identity and early neural fate commitment by the enhancer module of IntegratorPossible reference: Zhang, Y. et al. (2025) The enhancer module of Integrator controls cell identity and early neural fate commitment., Nat Cell Biol, PMID 39592860
PXD054906 Dataset with its publication pending (from iProX)Dataset title: Platelet proteomics reveals mechanism of platelet activation inhibition by AEEPossible reference: Tao, Q. et al. (2024) Multi-Omics Approaches for Liver Reveal the Thromboprophylaxis Mechanism of Aspirin Eugenol Ester in Rat Thrombosis Model., Int J Mol Sci, PMID 38396823
PXD054869 Dataset with its publication pending (from PRIDE)Dataset title: Myeloid lineage C3 induces reactive gliosis and neuronal stress during CNS inflammationPossible reference: Garton, T. et al. (2025) Myeloid lineage C3 induces reactive gliosis and neuronal stress during CNS inflammation., Nat Commun, PMID 40216817
PXD054861 Dataset with its publication pending (from PRIDE)Dataset title: Immunological landscape of human lymphoid explants during measles virus infectionPossible reference: Acklin, JA. et al. (2024) Immunological landscape of human lymphoid explants during measles virus infection., JCI Insight, PMID 39253971
PXD054844 Dataset with its publication pending (from jPOST)Dataset title: LETMD1 regulates mitochondrial protein synthesis and import to guard brown fat mitochondrial integrity and functionPossible reference: Snyder, M. et al. (2024) LETMD1 regulates mitochondrial protein synthesis and import to guard brown fat mitochondrial integrity and function., iScience, PMID 39398236
PXD054836 Dataset with its publication pending (from iProX)Dataset title: CKAP4 in Hepatocellular Carcinoma: Competitive RETREG1/FAM134B Binding, ER-phagy Regulation, and Cancer ProgressionPossible reference: Mo, J. et al. (2025) CKAP4 in hepatocellular carcinoma: competitive RETREG1/FAM134B binding, reticulophagy regulation, and cancer progression., Autophagy, PMID 39689859
PXD054820 no publication (from MassIVE)Dataset title: Inhibition of Cbl-b restores effector functions of human intratumoral NK cellsPossible reference: Tundo, S. et al. (2024) Inhibition of Cbl-b restores effector functions of human intratumoral NK cells., J Immunother Cancer, PMID 39551607
PXD054805 Dataset with its publication pending (from PRIDE)Dataset title: The p-MYH9/USP22/HIF-1α axis promotes lenvatinib resistance and cancer stemness in hepatocellular carcinomaPossible reference: Shan, Q. et al. (2024) The p-MYH9/USP22/HIF-1α axis promotes lenvatinib resistance and cancer stemness in hepatocellular carcinoma., Signal Transduct Target Ther, PMID 39300073
PXD054796 Dataset with its publication pending (from iProX)Dataset title: Spatiotemporally-resolved mapping of extracellular proteomes via in vivo-compatible TyroIDPossible reference: Zhang, Z. et al. (2025) Spatiotemporally resolved mapping of extracellular proteomes via in vivo-compatible TyroID., Nat Commun, PMID 40089463
PXD054791 Dataset with its publication pending (from PRIDE)Dataset title: Modelling complex cardiovascular disease in mature organoid modelPossible reference: Achberger, K. et al. (2019) Merging organoid and organ-on-a-chip technology to generate complex multi-layer tissue models in a human retina-on-a-chip platform., Elife, PMID 31451149
PXD054783 Dataset with its publication pending (from PRIDE)Dataset title: CXCL12 restricts tumor growth by suppressing the Ras, ERK1/2, c-Myc and the immune checkpoint PDL1 pathwaysPossible reference: Kravtsova-Ivantsiv, Y. et al. (2024) CXCL12 restricts tumor growth by suppressing the Ras, ERK1/2, c-Myc, and the immune checkpoint PD-L1 pathways., Proc Natl Acad Sci U S A, PMID 39689179
PXD054769 no publication (from MassIVE)Dataset title: Scnn1b transgenic mice: BALF exosome proteomicsPossible reference: Mao, Y. et al. (2024) Airspaces-derived exosomes contain disease-relevant protein signatures in a mouse model of cystic fibrosis (CF)-like mucoinflammatory lung disease., Front Pharmacol, PMID 39386033
PXD054760 Dataset with its publication pending (from PRIDE)Dataset title: The USP12/46 deubiquitinases protect integrins from ESCRT-mediated lysosomal degradationPossible reference: Yu, K. et al. (2024) The USP12/46 deubiquitinases protect integrins from ESCRT-mediated lysosomal degradation., EMBO Rep, PMID 39506038
PXD054751 Dataset with its publication pending (from PRIDE)Dataset title: Structuring lipid nanoparticles, DNA, and protein corona into stealth bionanoarchitectures for in vivo gene deliveryPossible reference: Renzi, S. et al. (2024) Structuring lipid nanoparticles, DNA, and protein corona into stealth bionanoarchitectures for in vivo gene delivery., Nat Commun, PMID 39438484
PXD054748 Dataset with its publication pending (from PRIDE)Dataset title: Discovery and mechanism of K63-linkage-directed deubiquitinase activity in USP53Possible reference: Wendrich, K. et al. (2024) Discovery and mechanism of K63-linkage-directed deubiquitinase activity in USP53., Nat Chem Biol, PMID 39587316
PXD054728 Dataset with its publication pending (from PRIDE)Dataset title: Cross-linking mass spectrometry of purified human endosomesPossible reference: Ho, T. et al. (2016) The Kringle-like Domain Facilitates Post-endoplasmic Reticulum Changes to Premelanosome Protein (PMEL) Oligomerization and Disulfide Bond Configuration and Promotes Amyloid Formation., J Biol Chem, PMID 26694611
PXD054724 no publication (from MassIVE)Dataset title: In vivo and in vitro analysis of the role of the Prc protease in inducing mucoidy in Pseudomonas aeruginosaPossible reference: Sommerfield, AG. et al. (2024) In vivo and in vitro analysis of the role of the Prc protease in inducing mucoidy in Pseudomonas aeruginosa., bioRxiv, PMID 38854061
PXD054722 Dataset with its publication pending (from PRIDE)Dataset title: Identification of phosphorylation sites of BAG3Possible reference: Xue, L. et al. (2014) Identification of extracellular signal-regulated kinase 1 (ERK1) direct substrates using stable isotope labeled kinase assay-linked phosphoproteomics., Mol Cell Proteomics, PMID 25022875
PXD054689 Dataset with its publication pending (from jPOST)Dataset title: Korean Tissue Phosphoproteome AnalysisPossible reference: Zhao, D. et al. (2024) Multi-omics characterization of esophageal squamous cell carcinoma identifies molecular subtypes and therapeutic targets., JCI Insight, PMID 38652547
PXD054678 Dataset with its publication pending (from PRIDE)Dataset title: A platform for mapping reactive cysteines within the immunopeptidomePossible reference: Zhang, C. et al. (2024) A platform for mapping reactive cysteines within the immunopeptidome., Nat Commun, PMID 39516457
PXD054663 Dataset with its publication pending (from PRIDE)Dataset title: Proteomics dataset of knockdown of AKT3 on protein expression and function in female germline stem cellsPossible reference: Shen, Y. et al. (2024) Proteomic dataset of knockdown of AKT3 on protein expression and function in female germline stem cells., Data Brief, PMID 39687386
PXD054656 Dataset with its publication pending (from iProX)Dataset title: The proteome of Pelodiscus sinensisPossible reference: Rawendra, RD. et al. (2013) A novel angiotensin converting enzyme inhibitory peptide derived from proteolytic digest of Chinese soft-shelled turtle egg white proteins., J Proteomics, PMID 24140975
PXD054623 Dataset with its publication pending (from PRIDE)Dataset title: LRRTM2 controls presynapse nano-organization and AMPA receptor sub-positioning through Neurexin-binding interfacePossible reference: Liouta, K. et al. (2024) LRRTM2 controls presynapse nano-organization and AMPA receptor sub-positioning through Neurexin-binding interface., Nat Commun, PMID 39394199
PXD054621 Dataset with its publication pending (from iProX)Dataset title: Proteins interacting with GBP5 and RSV-SH proteinPossible reference: Qu, X. et al. (2025) KRT9 is required for GBP5 suppression of human respiratory syncytial virus., J Virol, PMID 39835811
PXD054579 Dataset with its publication pending (from PRIDE)Dataset title: Rational engineering of minimally immunogenic nucleases for gene therapyPossible reference: Raghavan, R. et al. (2025) Rational engineering of minimally immunogenic nucleases for gene therapy., Nat Commun, PMID 39747875
PXD054577 Dataset with its publication pending (from PRIDE)Dataset title: Intragenic DNA inversions expand bacterial coding capacityPossible reference: Chanin, RB. et al. (2023) Intragenic DNA inversions expand bacterial coding capacity., bioRxiv, PMID 36945655
PXD054570 Dataset with its publication pending (from iProX)Dataset title: Specific sDMA Modifications on the RGG/RG Motif of METTL14 Regulate Its Function in AMLPossible reference: Zhong, Y. et al. (2025) Specific sDMA modifications on the RGG/RG motif of METTL14 regulate its function in AML., Cell Commun Signal, PMID 40057764
PXD054559 Dataset with its publication pending (from PRIDE)Dataset title: Achieving a 35plex Tandem Mass Tag Reagent Set Through Deuterium IncorporationPossible reference: Zuniga, NR. et al. (2024) Achieving a 35-Plex Tandem Mass Tag Reagent Set through Deuterium Incorporation., J Proteome Res, PMID 39380184
PXD054534 Dataset with its publication pending (from PRIDE)Dataset title: In vitro investigations on the impact of constituents on fermented dairy on fecal microbiota compositionPossible reference: Li, Q. et al. (2025) In vitro investigations on the impact of fermented dairy constituents on fecal microbiota composition and fermentation activity., Microbiol Spectr, PMID 39902955
PXD054525 Dataset with its publication pending (from PRIDE)Dataset title: Josephin Domain Containing 2 (JOSD2) Inhibition as Pan-KRAS-Mutation-Targeting Strategy for Colorectal CancerPossible reference: Yuan, T. et al. (2025) Josephin Domain Containing 2 (JOSD2) inhibition as Pan-KRAS-mutation-targeting strategy for colorectal cancer., Nat Commun, PMID 40240366
PXD054506 Dataset with its publication pending (from jPOST)Dataset title: Mouse primary hepatocyte secretomePossible reference: Bárcena, C. et al. (2015) Angiogenin secretion from hepatoma cells activates hepatic stellate cells to amplify a self-sustained cycle promoting liver cancer., Sci Rep, PMID 25604905
PXD054457 no publication (from MassIVE)Dataset title: Exploring Protein Post-Translational Modifications of Breast Cancer Cells Using a Novel Combinatorial Search AlgorithmPossible reference: Vasileva-Slaveva, M. et al. (2024) Exploring Protein Post-Translational Modifications of Breast Cancer Cells Using a Novel Combinatorial Search Algorithm., Int J Mol Sci, PMID 39337390
PXD054445 Dataset with its publication pending (from PRIDE)Dataset title: Formaldehyde fixation helps preserving proteome state during single-cell proteomics sample processing and analysisPossible reference: Piga, I. et al. (2025) Formaldehyde Fixation Helps Preserve the Proteome State during Single-Cell Proteomics Sample Processing and Analysis., J Proteome Res, PMID 39901769
PXD054430 no publication (from MassIVE)Dataset title: Size Exclusion Chromatography Based Proteomic and Degradomic Profiling of Inflammasome-Activated, Murine Bone Marrow-Derived Dendritic Cells Possible reference: Vogele, D. et al. (2024) Size exclusion chromatography based proteomic and degradomic profiling of inflammasome-activated, murine bone marrow-derived dendritic cells highlights complex retention and release of cleavage products., Mol Omics, PMID 39378052
PXD054393 Dataset with its publication pending (from PRIDE)Dataset title: B7-H4 post-translational modificationsPossible reference: Song, X. et al. (2020) Pharmacologic Suppression of B7-H4 Glycosylation Restores Antitumor Immunity in Immune-Cold Breast Cancers., Cancer Discov, PMID 32938586
PXD054386 Dataset with its publication pending (from PRIDE)Dataset title: Mitochondrial translation regulates terminal erythroid differentiation by maintaining iron homeostasisPossible reference: Zhang, S. et al. (2019) HRI coordinates translation necessary for protein homeostasis and mitochondrial function in erythropoiesis., Elife, PMID 31033440
PXD054356 Dataset with its publication pending (from PRIDE)Dataset title: PLpro inhibition protects in post-acute sequelae mouse model of COVID-19Possible reference: M Bader, S. et al. (2025) A novel PLpro inhibitor improves outcomes in a pre-clinical model of long COVID., Nat Commun, PMID 40180914
PXD054349 no publication (from MassIVE)Dataset title: The promiscuous biotin ligase TurboID reveals the proxisome of the T3SS chaperone IpgC in the cytoplasm of Shigella flexneriPossible reference: Haidar-Ahmad, N. et al. (2024) The promiscuous biotin ligase TurboID reveals the proxisome of the T3SS chaperone IpgC in Shigella flexneri., mSphere, PMID 39480076
PXD054325 Dataset with its publication pending (from iProX)Dataset title: IP-MS experiment with biotin-iZMYND8-34 to analyze its associated proteinsPossible reference: He, H. et al. (2024) Matrin-3 acts as a potential biomarker and promotes hepatocellular carcinoma progression by interacting with cell cycle-regulating genes., Cell Cycle, PMID 38252499
PXD054321 Dataset with its publication pending (from iProX)Dataset title: Proteome of synthetic ribosomal 40S subunitPossible reference: Xing, W. et al. (2018) Salidroside influences the cellular cross-talk of human fetal lung diploid fibroblasts: A proteomic approach., Environ Toxicol Pharmacol, PMID 29329019
PXD054314 Dataset with its publication pending (from PRIDE)Dataset title: The proto-oncogene tyrosine kinase c-SRC facilitates glioblastoma progression by remodeling fatty acid synthesisPossible reference: Zhao, W. et al. (2024) The proto-oncogene tyrosine kinase c-SRC facilitates glioblastoma progression by remodeling fatty acid synthesis., Nat Commun, PMID 39198451
PXD054289 no publication (from MassIVE)Dataset title: Advanced multimodal mass spectrometry imaging reveals functional differences of placental villous compartments at microscale resolutionPossible reference: VeliÄković, M. et al. (2025) Advanced multi-modal mass spectrometry imaging reveals functional differences of placental villous compartments at microscale resolution., Nat Commun, PMID 40021619
PXD054256 Dataset with its publication pending (from iProX)Dataset title: CSF proteomics of leptomeningeal metastasis mouse modelsPossible reference: Remsik, J. et al. (2023) Leptomeningeal anti-tumor immunity follows unique signaling principles., bioRxiv, PMID 36993586
PXD054211 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic Profile of Circulating Extracellular Vesicles in the Brain after Δ 9-Tetrahydrocannabinol InhalationPossible reference: Lallai, V. et al. (2024) Proteomic Profile of Circulating Extracellular Vesicles in the Brain after Δ9-Tetrahydrocannabinol Inhalation., Biomolecules, PMID 39334909
PXD054207 Dataset with its publication pending (from PRIDE)Dataset title: Cas9 immunoprecipatation-mass spectrometry (IP-MS)Possible reference: Zhang, Y. et al. (2016) Cold-inducible RNA-binding protein CIRP/hnRNP A18 regulates telomerase activity in a temperature-dependent manner., Nucleic Acids Res, PMID 26673712
PXD054180 Dataset with its publication pending (from PRIDE)Dataset title: Lapatinib-Induced Enhancement Of Mitochondrial Respiration In HER2-Positive SK-BR-3 Cells: Mechanism Revealed By Analysis Of Proteomic But Not Transcriptomic DataPossible reference: Kamashev, D. et al. (2024) Lapatinib-induced enhancement of mitochondrial respiration in HER2-positive SK-BR-3 cells: mechanism revealed by analysis of proteomic but not transcriptomic data., Front Mol Biosci, PMID 39403185
PXD054162 Dataset with its publication pending (from iProX)Dataset title: Transcriptomic and Proteomic Sequencing of of Human Hepatic OrganoidsPossible reference: Zhang, S. et al. (2024) Transcriptomic and proteomic sequencing unveils the role of vitamin D and metabolic flux shifts in the induction of human hepatic organoids., Stem Cell Res Ther, PMID 39696644
PXD054151 no publication (from MassIVE)Dataset title: Identification of Disease-relevant, Sex-based Proteomic Differences in iPSC-derived Vascular Smooth MusclePossible reference: Ariyasinghe, NR. et al. (2024) Identification of Disease-relevant, Sex-based Proteomic Differences in iPSC-derived Vascular Smooth Muscle., bioRxiv, PMID 39211096
PXD054128 Dataset with its publication pending (from iProX)Dataset title: Multi-omics approach identify key proteins and regulatory pathways in colorectal cancerPossible reference: Riaz, T. et al. (2025) Unravelling the role of NDUFAF4 in Colon Cancer: Insights from multi-omics analysis., J Proteomics, PMID 39244022
PXD054126 Dataset with its publication pending (from PRIDE)Dataset title: FDA-approved Disulfiram Inhibits the NLRP3 InflammasomePossible reference: Wang, C. et al. (2021) NLRP3 inflammasome activation triggers gasdermin D-independent inflammation., Sci Immunol, PMID 34678046
PXD054084 no publication (from MassIVE)Dataset title: Haloacetonitriles Induce Structure-related Cellular Toxicity through Distinct Proteome Thiol Reaction MechanismsPossible reference: Yeung, K. et al. (2025) Haloacetonitriles Induce Structure-Related Cellular Toxicity Through Distinct Proteome Thiol Reaction Mechanisms., ACS Environ Au, PMID 39830722
PXD054080 no publication (from MassIVE)Dataset title: DNA O-MAP uncovers the molecular neighborhoods associated with specific genomic lociPossible reference: Liu, Y. et al. (2024) DNA O-MAP uncovers the molecular neighborhoods associated with specific genomic loci., bioRxiv, PMID 39091817
PXD054059 no publication (from MassIVE)Dataset title: Enhancing anti-EGFRvIII CAR T cell therapy against glioblastoma with a paracrine SIRPgamma-derived CD47 blockerPossible reference: Martins, TA. et al. (2024) Enhancing anti-EGFRvIII CAR T cell therapy against glioblastoma with a paracrine SIRPγ-derived CD47 blocker., Nat Commun, PMID 39521782
PXD054056 no publication (from MassIVE)Dataset title: Understanding the maintenance and regulation of HSCs in spleen by niche cellsPossible reference: Crane, GM. et al. (2017) Adult haematopoietic stem cell niches., Nat Rev Immunol, PMID 28604734
PXD054054 Dataset with its publication pending (from iProX)Dataset title: Proteome analysis of 11 organs of RJBs and ITBs nursing beePossible reference: Wang, R. et al. (2025) Multi-organ proteome reveals different nursing ability between two honeybee srocks., J Proteomics, PMID 40037490
PXD054050 no publication (from MassIVE)Dataset title: Effects of light exposure on circulating metabolites in micePossible reference: Laiakis, EC. et al. (2017) Metabolic Dysregulation after Neutron Exposures Expected from an Improvised Nuclear Device., Radiat Res, PMID 28475424
PXD054033 Dataset with its publication pending (from PRIDE)Dataset title: OmpA controls order in the outer membrane and shares the mechanical loadPossible reference: Benn, G. et al. (2024) OmpA controls order in the outer membrane and shares the mechanical load., Proc Natl Acad Sci U S A, PMID 39630873
PXD054025 Dataset with its publication pending (from iProX)Dataset title: PCSHA changhai prostate cancer (PCa) proteomicsPossible reference: Zhang, J. et al. (2023) Identification of novel molecular subtypes and a signature to predict prognosis and therapeutic response based on cuproptosis-related genes in prostate cancer., Front Oncol, PMID 37205181
PXD054016 Dataset with its publication pending (from PRIDE)Dataset title: Genesis and regulation of C-terminal cyclic imides from protein damagePossible reference: Xu, W. et al. (2024) Genesis and regulation of C-terminal cyclic imides from protein damage., bioRxiv, PMID 39211211
PXD054015 no publication (from MassIVE)Dataset title: An inflection point in high-throughput proteomics with Orbitrap Astral: analysis of biofluids, cells, and tissuesPossible reference: Hendricks, NG. et al. (2024) An inflection point in high-throughput proteomics with Orbitrap Astral: analysis of biofluids, cells, and tissues., bioRxiv, PMID 38712179
PXD054003 Dataset with its publication pending (from PRIDE)Dataset title: The hGID GID4 E3 ubiquitin ligase complex targets ARHGAP11A to regulate cell migrationPossible reference: Bagci, H. et al. (2024) The hGIDGID4 E3 ubiquitin ligase complex targets ARHGAP11A to regulate cell migration., Life Sci Alliance, PMID 39389782
PXD053999 Dataset with its publication pending (from PRIDE)Dataset title: The sodium leak channel NALCN is regulated by the neuronal SNARE complexPossible reference: Usher, S. et al. (2025) The sodium leak channel NALCN is regulated by neuronal SNARE complex proteins., Sci Adv, PMID 40085699
PXD053997 Dataset with its publication pending (from iProX)Dataset title: Anti-Toxoplasma gondii effect of vorinostat in vitro and in vivoPossible reference: Zeng, T. et al. (2025) Characterization of the Activities of Vorinostat Against Toxoplasma gondii., Int J Mol Sci, PMID 39859508
PXD053989 no publication (from MassIVE)Dataset title: ADP-ribosylation During Influenza A Infection of A549 CellsPossible reference: Li, MY. et al. (2025) ARF4-mediated intracellular transport as a broad-spectrum antiviral target., Nat Microbiol, PMID 39972062
PXD053987 Dataset with its publication pending (from jPOST)Dataset title: Proteomic analysis of two leukemia cell lines K562 and Lucena-1.Possible reference: Beraldo-Neto, E. et al. (2024) Proteomic Dynamics of Multidrug Resistance Mechanisms in Lucena 1 Cell Line., Cells, PMID 39272999
PXD053965 Dataset with its publication pending (from iProX)Dataset title: Analysis of alfalfa TMT proteomePossible reference: Fan, W. et al. (2018) Proteomics integrated with metabolomics: analysis of the internal causes of nutrient changes in alfalfa at different growth stages., BMC Plant Biol, PMID 29728056
PXD053959 no publication (from MassIVE)Dataset title: Acid cleavable biotin-alkyne improves sensitivity for direct detection of biotin labeled peptides in BONCAT analysis.Possible reference: McClatchy, DB. et al. (2024) Acid cleavable biotin-alkyne improves sensitivity for direct detection of biotin labeled peptides in BONCAT analysis., bioRxiv, PMID 39071280
PXD053948 Dataset with its publication pending (from PRIDE)Dataset title: A WYL transcription factor regulates Lactiplantibacillus plantarum intestinal colonization via perceiving c-di-GMPPossible reference: Guo, Q. et al. (2025) A WYL domain transcription factor regulates Lactiplantibacillus plantarum intestinal colonization via perceiving c-di-GMP., Nat Commun, PMID 40038299
PXD053947 Dataset with its publication pending (from PRIDE)Dataset title: Sulfoglycolysis sustains Eubacterium rectale in low-fiber dietsPossible reference: Sharma, M. et al. (2025) Sulfoglycolysis sustains Eubacterium rectale in low-fiber diets., J Biol Chem, PMID 39956340
PXD053942 Dataset with its publication pending (from PRIDE)Dataset title: Mitochondrial KMT9 methylates DLAT to control pyruvate dehydrogenase activity, de novo lipogenesis, and prostate cancer growthPossible reference: Jia, Y. et al. (2025) Mitochondrial KMT9 methylates DLAT to control pyruvate dehydrogenase activity and prostate cancer growth., Nat Commun, PMID 39885202
PXD053939 Dataset with its publication pending (from PRIDE)Dataset title: Pyroptosis therapy targeting TNBCPossible reference: Tamura, Y. et al. (2022) PolyI:C attenuates transforming growth factor-β signaling to induce cytostasis of surrounding cells by secreted factors in triple-negative breast cancer., Cancer Sci, PMID 34897916
PXD053922 no publication (from MassIVE)Dataset title: Therapeutic reduction of rad23a extends lifespan and mitigates pathology in TDP-43 mice. Possible reference: Guo, X. et al. (2024) Reduction of RAD23A extends lifespan and mitigates pathology in TDP-43 mice., bioRxiv, PMID 39314471
PXD053908 Dataset with its publication pending (from PRIDE)Dataset title: p38 mediated ACSL4 phosphorylation drives stress-induced esophageal squamous cell carcinoma growth through Src myristoylationPossible reference: Yuan, Q. et al. (2025) p38 mediated ACSL4 phosphorylation drives stress-induced esophageal squamous cell carcinoma growth through Src myristoylation., Nat Commun, PMID 40195298
PXD053906 Dataset with its publication pending (from PRIDE)Dataset title: Increased viral tolerance mediates by antiviral RNA interference in bat cellsPossible reference: Dai, Y. et al. (2024) Increased viral tolerance mediates by antiviral RNA interference in bat cells., Cell Rep, PMID 39102336
PXD053894 Dataset with its publication pending (from PRIDE)Dataset title: ¬Macropinocytosis mediates metabolic resistance to loss of glutamine transport in triple-negative breast cancerPossible reference: Wahi, K. et al. (2024) Macropinocytosis mediates resistance to loss of glutamine transport in triple-negative breast cancer., EMBO J, PMID 39420093
PXD053893 Dataset with its publication pending (from PRIDE)Dataset title: Distinct mechanistic, conformational and substrate selectivity profiles emerging in the evolution of high catalytic activity enzymes via parallel trajectoriesPossible reference: Karamitros, CS. et al. (2024) Mechanistic conformational and substrate selectivity profiles emerging in the evolution of enzymes via parallel trajectories., Nat Commun, PMID 39152129
PXD053881 Dataset with its publication pending (from PRIDE)Dataset title: Bacterial RNA sensing by TLR8 requires RNase 6 processing and is inhibited by RNA 2’O-methylationPossible reference: Nunes, IV. et al. (2024) Bacterial RNA sensing by TLR8 requires RNase 6 processing and is inhibited by RNA 2'O-methylation., EMBO Rep, PMID 39363059
PXD053859 no publication (from MassIVE)Dataset title: High-throughput cell-based proteomics perturbation: HTP PerturbationPossible reference: Seyedmohammad, S. et al. (2025) High-Throughput Workflow for Detergent-free Cell-Based Proteomic Characterization., J Proteome Res, PMID 40255039
PXD053855 no publication (from MassIVE)Dataset title: High-throughput cell-based proteomics perturbation: Buffer OptimizationPossible reference: Seyedmohammad, S. et al. (2025) High-Throughput Workflow for Detergent-free Cell-Based Proteomic Characterization., J Proteome Res, PMID 40255039
PXD053818 Dataset with its publication pending (from iProX)Dataset title: Low-input redoxomics facilitates global identification of metabolic regulators of oxidative stress in the gutPossible reference: Xiao, X. et al. (2025) Low-input redoxomics facilitates global identification of metabolic regulators of oxidative stress in the gut., Signal Transduct Target Ther, PMID 39774148
PXD053800 Dataset with its publication pending (from PRIDE)Dataset title: Mutant CEBPA promotes tolerance to inflammatory stress through deficient AP-1 activationPossible reference: Cadefau-Fabregat, M. et al. (2025) Mutant CEBPA promotes tolerance to inflammatory stress through deficient AP-1 activation., Nat Commun, PMID 40221437
PXD053736 Dataset with its publication pending (from iProX)Dataset title: Targeted and non-targeted proteomics to identify the urinary protein biomarkers for Wilson diseasePossible reference: Dong, S. et al. (2025) Targeted and non-targeted proteomics to identify the urinary protein biomarkers for Wilson disease., Clin Chim Acta, PMID 39672253
PXD053689 Dataset with its publication pending (from iProX)Dataset title: Multi-Omics Analysis Unveils Nsun5-Mediated Molecular Alterations in the Somatosensory Cortex and its Impact on Pain SensationPossible reference: Chen, P. et al. (2025) Multi-Omics Analysis Unveils Nsun5-Mediated Molecular Alterations in the Somatosensory Cortex and its Impact on Pain Sensation., Mol Cell Proteomics, PMID 40180179
PXD053670 Dataset with its publication pending (from iProX)Dataset title: Protein Profile of Bovine Oviductal Extracellular VesiclesPossible reference: Mazzarella, R. et al. (2025) Embryo-Induced Changes in the Protein Profile of Bovine Oviductal Extracellular Vesicles., Mol Cell Proteomics, PMID 40024377
PXD053667 Dataset with its publication pending (from iProX)Dataset title: Protein Profile of Bovine Oviductal Extracellular VesiclesPossible reference: Mazzarella, R. et al. (2025) Embryo-Induced Changes in the Protein Profile of Bovine Oviductal Extracellular Vesicles., Mol Cell Proteomics, PMID 40024377
PXD053637 Dataset with its publication pending (from jPOST)Dataset title: Cysteine redoxome landscape in mouse brown adipose tissue under acute cold exposurePossible reference: Oo, HK. et al. (2025) Cysteine redoxome landscape in mouse brown adipose tissue under acute cold exposure., iScience, PMID 40104075
PXD053632 Dataset with its publication pending (from iProX)Dataset title: Chemical Proteomic Profiling of Lysine Crotonylation by Bioorthogonal Probes in Mammalian CellsPossible reference: Zhou, YF. et al. (2025) Chemical proteomic profiling of lysine crotonylation using minimalist bioorthogonal probes in mammalian cells., Chem Sci, PMID 39817196
PXD053620 Dataset with its publication pending (from PRIDE)Dataset title: Multi-omics approaches define novel aphid effector candidates associated with virulence and avirulence phenotypesPossible reference: Thorpe, P. et al. (2024) Multi-omics approaches define novel aphid effector candidates associated with virulence and avirulence phenotypes., BMC Genomics, PMID 39528973
PXD053614 no publication (from MassIVE)Dataset title: Sirt5 regulates chondrocyte metabolism and osteoarthritis development through protein lysine malonylationPossible reference: Zhu, S. et al. (2021) Sirt5 Deficiency Causes Posttranslational Protein Malonylation and Dysregulated Cellular Metabolism in Chondrocytes Under Obesity Conditions., Cartilage, PMID 33567897
PXD053605 no publication (from MassIVE)Dataset title: Arf1-dependent LRBA recruitment to Rab4 endosomes is required for endolysosome homeostasisPossible reference: Szentgyörgyi, V. et al. (2024) Arf1-dependent LRBA recruitment to Rab4 endosomes is required for endolysosome homeostasis., J Cell Biol, PMID 39325073
PXD053604 Dataset with its publication pending (from jPOST)Dataset title: Proteomic and phosphoproteomic profiling revealed distinct cellular responses during Tilapia Lake Virus infectionPossible reference: Lertwanakarn, T. et al. (2025) Proteomic and phosphoproteomic profilings reveal distinct cellular responses during Tilapinevirus tilapiae entry and replication., PeerJ, PMID 39995988
PXD053600 Dataset with its publication pending (from PRIDE)Dataset title: Conserved role of the SERK‒BIR module in development and immunity across land plantsPossible reference: Yan, Y. et al. (2025) Conserved role of the SERK-BIR module in development and immunity across land plants., Curr Biol, PMID 40250435
PXD053595 Dataset with its publication pending (from PRIDE)Dataset title: SART3 promotes homologous recombination repair by stimulating DNA–RNA hybrids removal and DNA end resectionPossible reference: Fu, H. et al. (2025) SART3 promotes homologous recombination repair by stimulating DNA-RNA hybrids removal and DNA end resection., Nat Commun, PMID 40050279
PXD053562 Dataset with its publication pending (from PRIDE)Dataset title: Polysulfur-based bulking of dynamin-related protein 1 prevents ischemic sulfide catabolism and heart failurePossible reference: Nishimura, A. et al. (2025) Polysulfur-based bulking of dynamin-related protein 1 prevents ischemic sulfide catabolism and heart failure in mice., Nat Commun, PMID 39747092
PXD053554 Dataset with its publication pending (from PRIDE)Dataset title: Phospho-tyrosine proteomic analysis in Ptprd-meB+/– micePossible reference: Dwivedi, P. et al. (2019) Time resolved quantitative phospho-tyrosine analysis reveals Bruton's Tyrosine kinase mediated signaling downstream of the mutated granulocyte-colony stimulating factor receptors., Leukemia, PMID 29977015
PXD053546 Dataset with its publication pending (from iProX)Dataset title: proteomic study of STAT3 interacting proteins in cell membranePossible reference: O'Brien, JH. et al. (2012) Rat mammary extracellular matrix composition and response to ibuprofen treatment during postpartum involution by differential GeLC-MS/MS analysis., J Proteome Res, PMID 22897585
PXD053519 no publication (from MassIVE)Dataset title: altered proteomic events induced by a beta in SHSY5YPossible reference: Ai, X. et al. (2024) Proteomic Analysis Reveals Physiological Activities of Aβ Peptide for Alzheimer's Disease., Int J Mol Sci, PMID 39125907
PXD053512 Dataset with its publication pending (from PRIDE)Dataset title: Longitudinal omics data and preclinical treatment identify proteasome inhibition as therapy for ibrutinib-resistant CLLPossible reference: Arseni, L. et al. (2025) Longitudinal omics data and preclinical treatment suggest the proteasome inhibitor carfilzomib as therapy for ibrutinib-resistant CLL., Nat Commun, PMID 39863584
PXD053511 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic profiling of the exponential and stationary of phases of CHO cell culture.Possible reference: Sebastião, MJ. et al. (2023) Identification of Mispairing Omic Signatures in Chinese Hamster Ovary (CHO) Cells Producing a Tri-Specific Antibody., Biomedicines, PMID 38001891
PXD053508 Dataset with its publication pending (from PRIDE)Dataset title: Aspergillus fumigatus spore proteases alter the respiratory mucosa architecture and facilitate equine herpesvirus 1 infectionPossible reference: Portaels, J. et al. (2024) Aspergillus Fumigatus Spore Proteases Alter the Respiratory Mucosa Architecture and Facilitate Equine Herpesvirus 1 Infection., Viruses, PMID 39205182
PXD053504 Dataset with its publication pending (from jPOST)Dataset title: Plasma proteomic profiles of patients with HIV infection and coinfection with hepatitis B/C virus undergoing anti-retroviral therapyPossible reference: Tarnathummanan, C. et al. (2024) Plasma proteomic profiles of patients with HIV infection and coinfection with hepatitis B/C virus undergoing anti‑retroviral therapy., Biomed Rep, PMID 39268407
PXD053500 Dataset with its publication pending (from PRIDE)Dataset title: Kinetic principles of chemical cross-link formation for protein-protein interactionsPossible reference: Kammer, KM. et al. (2024) Kinetic principles of chemical cross-link formation for protein-protein interactions., Proc Natl Acad Sci U S A, PMID 39652756
PXD053493 no publication (from MassIVE)Dataset title: The PNUTS phosphatase complex controls transcription pause releasePossible reference: Kelley, JR. et al. (2024) The PNUTS phosphatase complex controls transcription pause release., Mol Cell, PMID 39603239
PXD053492 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic profiling of CHO cell temperature shiftPossible reference: Farrell, A. et al. (2014) Application of multi-omics techniques for bioprocess design and optimization in chinese hamster ovary cells., J Proteome Res, PMID 24915626
PXD053476 Dataset with its publication pending (from iProX)Dataset title: HERC5 interaction protein profilePossible reference: Xiu, MX. et al. (2022) Identification of hub genes, miRNAs and regulatory factors relevant for Duchenne muscular dystrophy by bioinformatics analysis., Int J Neurosci, PMID 32791870
PXD053451 Dataset with its publication pending (from iProX)Dataset title: Site-specific N-glycosylation Characterization of Monoclonal Immunoglobulins in Multiple MyelomaPossible reference: Luo, M. et al. (2022) Site-specific N-glycosylation characterization of micro monoclonal immunoglobulins based on EThcD-sceHCD-MS/MS., Front Immunol, PMID 36189210
PXD053428 Dataset with its publication pending (from PRIDE)Dataset title: Conserved role of the SERK‒BIR module in development and immunity across land plantsPossible reference: Yan, Y. et al. (2025) Conserved role of the SERK-BIR module in development and immunity across land plants., Curr Biol, PMID 40250435
PXD053407 Dataset with its publication pending (from iProX)Dataset title: Downregulation of STAT1 improved learning and memory impairments in aging micePossible reference: Li, X. et al. (2025) Downregulation of STAT1 improved learning and memory impairments in aging mice., Neurosci Lett, PMID 39933634
PXD053405 Dataset with its publication pending (from PRIDE)Dataset title: GUK1 activation is a metabolic liability in oncogene-driven lung cancerPossible reference: Schneider, JL. et al. (2025) GUK1 activation is a metabolic liability in lung cancer., Cell, PMID 39919745
PXD053395 Dataset with its publication pending (from PRIDE)Dataset title: REPURPOSING OF GLATIRAMER ACETATE TO TREAT CARDIAC ISCHEMIA IN ANIMAL MODELSPossible reference: Aviel, G. et al. (2024) Repurposing of glatiramer acetate to treat cardiac ischemia in rodent models., Nat Cardiovasc Res, PMID 39215106
PXD053377 Dataset with its publication pending (from iProX)Dataset title: EcN OMVs mass spectrometry proteomics dataPossible reference: Aguilera, L. et al. (2014) Proteomic analysis of outer membrane vesicles from the probiotic strain Escherichia coli Nissle 1917., Proteomics, PMID 24307187
PXD053374 no publication (from MassIVE)Dataset title: diaPASEF for HLA-I peptide analysis enables quantification of common cancer neoantigensPossible reference: Oliinyk, D. et al. (2025) diaPASEF Analysis for HLA-I Peptides Enables Quantification of Common Cancer Neoantigens., Mol Cell Proteomics, PMID 40044040
PXD053371 no publication (from MassIVE)Dataset title: Histone H3.3 lysine 9 and 27 control repressive chromatin states at cryptic cis-regulatory elements and bivalent promoters in mouse embryonic stem cellsPossible reference: Trovato, M. et al. (2024) Histone H3.3 lysine 9 and 27 control repressive chromatin at cryptic enhancers and bivalent promoters., Nat Commun, PMID 39214979
PXD053359 Dataset with its publication pending (from PRIDE)Dataset title: Deep Plasma Proteome Profiling by Modulating Single Nanoparticle Protein Corona with Small MoleculesPossible reference: Ashkarran, AA. et al. (2024) Deep Plasma Proteome Profiling by Modulating Single Nanoparticle Protein Corona with Small Molecules., bioRxiv, PMID 38496642
PXD053355 Dataset with its publication pending (from PRIDE)Dataset title: Multi-omics approaches define novel aphid effector candidates associated with virulence and avirulence phenotypesPossible reference: Thorpe, P. et al. (2024) Multi-omics approaches define novel aphid effector candidates associated with virulence and avirulence phenotypes., BMC Genomics, PMID 39528973
PXD053340 Dataset with its publication pending (from iProX)Dataset title: Brain protein lactylation after exercise trainingPossible reference: Qian, P. et al. (2024) Transcriptional Expression of Histone Acetyltransferases and Deacetylases During the Recovery of Acute Exercise in Mouse Hippocampus., J Mol Neurosci, PMID 38565829
PXD053333 Dataset with its publication pending (from PRIDE)Dataset title: Targeted immunotherapy rescues pulmonary fibrosis by reducing activated fibroblasts and regulating alveolar cell profilePossible reference: Yan, J. et al. (2025) Targeted immunotherapy rescues pulmonary fibrosis by reducing activated fibroblasts and regulating alveolar cell profile., Nat Commun, PMID 40258811
PXD053319 Dataset with its publication pending (from iProX)Dataset title: Germ granule compartments and small RNA productionPossible reference: Zeng, C. et al. (2019) Functional Proteomics Identifies a PICS Complex Required for piRNA Maturation and Chromosome Segregation., Cell Rep, PMID 31216475
PXD053300 Dataset with its publication pending (from PRIDE)Dataset title: Histone dynamics at replication forks in embryonic stem cellsPossible reference: Almeida, R. et al. (2018) Chromatin conformation regulates the coordination between DNA replication and transcription., Nat Commun, PMID 29686321
PXD053285 no publication (from MassIVE)Dataset title: Multi-Omics after O-GlcNAc Alteration Identifies Cellular Processes Working Synergistically to Promote AneuploidyPossible reference: Boyd, SS. et al. (2024) Multi-Omics after O-GlcNAc Alteration Identifies Cellular Processes Working Synergistically to Promote Aneuploidy., bioRxiv, PMID 38659829
PXD053277 no publication (from MassIVE)Dataset title: IER3IP1-mutations cause microcephaly by selective inhibition of ER-Golgi transport Possible reference: Anitei, M. et al. (2024) IER3IP1-mutations cause microcephaly by selective inhibition of ER-Golgi transport., Cell Mol Life Sci, PMID 39115595
PXD053261 Dataset with its publication pending (from PRIDE)Dataset title: Conserved Role of FOXC1 in TNBC is parallel to FOXA1 in ER+ Breast CancerPossible reference: Ramachandran, R. et al. (2024) Conserved role of FOXC1 in TNBC is parallel to FOXA1 in ER+ breast cancer., iScience, PMID 39171293
PXD053239 no publication (from MassIVE)Dataset title: Impaired biogenesis of basic proteins impacts multiple hallmarks of the aging brainPossible reference: Di Fraia, D. et al. (2024) Impaired biogenesis of basic proteins impacts multiple hallmarks of the aging brain., bioRxiv, PMID 38260253
PXD053235 no publication (from MassIVE)Dataset title: Impaired biogenesis of basic proteins impacts multiple hallmarks of the aging brainPossible reference: Di Fraia, D. et al. (2024) Impaired biogenesis of basic proteins impacts multiple hallmarks of the aging brain., bioRxiv, PMID 38260253
PXD053232 no publication (from MassIVE)Dataset title: Impaired biogenesis of basic proteins impacts multiple hallmarks of the aging brainPossible reference: Di Fraia, D. et al. (2024) Impaired biogenesis of basic proteins impacts multiple hallmarks of the aging brain., bioRxiv, PMID 38260253
PXD053231 no publication (from MassIVE)Dataset title: Serum Proteomics Reveals Survival-Associated Biomarkers in Pancreatic Cancer Patients Treated with ChemoimmunotherapyPossible reference: Tognetti, M. et al. (2025) Serum proteomics reveals survival-associated biomarkers in pancreatic cancer patients treated with chemoimmunotherapy., iScience, PMID 40235590
PXD053229 no publication (from MassIVE)Dataset title: Impaired biogenesis of basic proteins impacts multiple hallmarks of the aging brainPossible reference: Di Fraia, D. et al. (2024) Impaired biogenesis of basic proteins impacts multiple hallmarks of the aging brain., bioRxiv, PMID 38260253
PXD053202 no publication (from MassIVE)Dataset title: Impaired biogenesis of basic proteins impacts multiple hallmarks of the aging brainPossible reference: Di Fraia, D. et al. (2024) Impaired biogenesis of basic proteins impacts multiple hallmarks of the aging brain., bioRxiv, PMID 38260253
PXD053201 no publication (from MassIVE)Dataset title: Impaired biogenesis of basic proteins impacts multiple hallmarks of the aging brainPossible reference: Di Fraia, D. et al. (2024) Impaired biogenesis of basic proteins impacts multiple hallmarks of the aging brain., bioRxiv, PMID 38260253
PXD053181 Dataset with its publication pending (from PRIDE)Dataset title: Smoking carcinogen induced inflammation promotes lung carcinogenesis via IRAK4 activationPossible reference: Aggarwal, RK. et al. (2025) Smoking-Associated Carcinogen-Induced Inflammation Promotes Lung Carcinogenesis via IRAK4 Activation., Clin Cancer Res, PMID 39704655
PXD053179 no publication (from MassIVE)Dataset title: Effects Beta-hydroxybutyrate on human islet proteomePossible reference: Banerjee, R. et al. (2024) Beta-Hydroxybutyrate Promotes Basal Insulin Secretion While Decreasing Glucagon Secretion in Mouse and Human Islets., Endocrinology, PMID 38970533
PXD053162 Dataset with its publication pending (from iProX)Dataset title: Proteome sequencing of tobacco yellow leaf mutantsPossible reference: Chen, S. et al. (2019) Cucurbit Chlorotic Yellows Virus p22 Protein Interacts with Cucumber SKP1LB1 and Its F-Box-Like Motif Is Crucial for Silencing Suppressor Activity., Viruses, PMID 31487883
PXD053125 no publication (from MassIVE)Dataset title: Design and application of synthetic 17B-HSD13 substrates to drug discovery, and to reveal preserved catalytic activity of protective human variantsPossible reference: Garnsey, MR. et al. (2025) Design and application of synthetic 17B-HSD13 substrates reveals preserved catalytic activity of protective human variants., Nat Commun, PMID 39746932
PXD053073 Dataset with its publication pending (from jPOST)Dataset title: Chromosomal domain formation by archaeal SMC, a roadblock protein, and DNA structurePossible reference: Yamaura, K. et al. (2025) Chromosomal domain formation by archaeal SMC, a roadblock protein, and DNA structure., Nat Commun, PMID 39971902
PXD053061 Dataset with its publication pending (from PRIDE)Dataset title: LGR signaling mediates muscle-adipose tissue crosstalk and protects against diet-induced insulin resistancePossible reference: Kubrak, O. et al. (2024) LGR signaling mediates muscle-adipose tissue crosstalk and protects against diet-induced insulin resistance., Nat Commun, PMID 39033139
PXD053059 Dataset with its publication pending (from iProX)Dataset title: metabolic reprogramming induced by LONP1 in prostate cancer is closely coupled with disease progressionPossible reference: Yao, M. et al. (2025) Lon protease 1-mediated metabolic reprogramming promotes the progression of prostate cancer., Cell Death Dis, PMID 39971909
PXD053043 Dataset with its publication pending (from PRIDE)Dataset title: Active repression of cell fate plasticity by PROX1 safeguards hepatocyte identity and prevents liver tumorigenesisPossible reference: Lim, B. et al. (2025) Active repression of cell fate plasticity by PROX1 safeguards hepatocyte identity and prevents liver tumorigenesis., Nat Genet, PMID 39948437
PXD053003 Dataset with its publication pending (from PRIDE)Dataset title: Matrisome Proteomics Reveals Novel Mediators of Muscle Remodeling with Aerobic Exercise TrainingPossible reference: Pattamaprapanont, P. et al. (2024) Matrisome proteomics reveals novel mediators of muscle remodeling with aerobic exercise training., Matrix Biol Plus, PMID 39220302
PXD052986 Dataset with its publication pending (from iProX)Dataset title: The proteomics analysis of Chimeric exosomesPossible reference: Gualdrón-López, M. et al. (2018) Characterization of Plasmodium vivax Proteins in Plasma-Derived Exosomes From Malaria-Infected Liver-Chimeric Humanized Mice., Front Microbiol, PMID 29988527
PXD052976 Dataset with its publication pending (from PRIDE)Dataset title: Haplotype variability in mitochondrial rRNA predisposes to metabolic syndromePossible reference: Pecina, P. et al. (2024) Haplotype variability in mitochondrial rRNA predisposes to metabolic syndrome., Commun Biol, PMID 39261587
PXD052975 no publication (from MassIVE)Dataset title: Discovery of Monovalent Direct Degraders of BRD4 That Act Via the Recruitment of DCAF11Possible reference: Parker, GS. et al. (2024) Discovery of Monovalent Direct Degraders of BRD4 That Act Via the Recruitment of DCAF11., Mol Cancer Ther, PMID 38907538
PXD052966 no publication (from MassIVE)Dataset title: GSK3 inhibition reduces ECM production and prevents age-related macular degeneration-like pathologyPossible reference: DiCesare, SM. et al. (2023) GSK3 inhibition reduces ECM production and prevents age-related macular degeneration-like pathology., bioRxiv, PMID 38168310
PXD052963 Dataset with its publication pending (from jPOST)Dataset title: Stress-induced condensation of TDP-43 in the nucleusPossible reference: Huang, WP. et al. (2024) Stress-induced TDP-43 nuclear condensation causes splicing loss of function and STMN2 depletion., Cell Rep, PMID 38941189
PXD052961 no publication (from MassIVE)Dataset title: Esophagitis-related precision medicinePossible reference: Mattern, S. et al. (2025) An AI-assisted morphoproteomic approach is a supportive tool in esophagitis-related precision medicine., EMBO Mol Med, PMID 39901020
PXD052937 no publication (from MassIVE)Dataset title: Liver tissue proteins improve the accuracy of plasma proteins as biomarkers in diagnosing metabolic dysfunction-associated steatohepatitisPossible reference: Sourianarayanane, A. et al. (2024) Liver Tissue Proteins Improve the Accuracy of Plasma Proteins as Biomarkers in Diagnosing Metabolic Dysfunction-Associated Steatohepatitis., Proteomics Clin Appl, PMID 39073724
PXD052931 Dataset with its publication pending (from jPOST)Dataset title: Plasmodium falciparum SET10 is a histone H3 lysine K18 methyltransferase regulating nucleic acid metabolic processes during intraerythrocytic developmentPossible reference: Musabyimana, J-P. et al. (2024) The Plasmodium falciparum histone methyltransferase SET10 participates in a chromatin modulation network crucial for intraerythrocytic development., mSphere, PMID 39445823
PXD052903 Dataset with its publication pending (from jPOST)Dataset title: Exploring the Functional Diversity and Metabolic Activities of the Human Gut Microbiome in Thai Adults in Response to a Prebiotic DietPossible reference: Kingkaw, A. et al. (2025) Exploring the functional diversity and metabolic activities of the human gut microbiome in Thai adults in response to a prebiotic diet., Microbiol Spectr, PMID 39670767
PXD052886 Dataset with its publication pending (from iProX)Dataset title: Cross-sectional study of proteomic differences between moderate and severe psoriasisPossible reference: Glickman, JW. et al. (2021) Cross-sectional study of blood biomarkers of patients with moderate to severe alopecia areata reveals systemic immune and cardiovascular biomarker dysregulation., J Am Acad Dermatol, PMID 32376430
PXD052885 Dataset with its publication pending (from iProX)Dataset title: Osmanthus fragrans leaf color proteomicsPossible reference: Zhang, C. et al. (2024) SWATH-MS based proteomics reveals the role of photosynthesis related proteins and secondary metabolic pathways in the colored leaves of sweet olive (Osmanthus fragrans)., BMC Genomics, PMID 39487388
PXD052884 Dataset with its publication pending (from jPOST)Dataset title: A comparative study of velvet worm slime major proteinsPossible reference: Graham, LD. et al. (2013) The adhesive skin exudate of Notaden bennetti frogs (Anura: Limnodynastidae) has similarities to the prey capture glue of Euperipatoides sp. velvet worms (Onychophora: Peripatopsidae)., Comp Biochem Physiol B Biochem Mol Biol, PMID 23665109
PXD052871 Dataset with its publication pending (from PRIDE)Dataset title: iDIA-QC: AI-empowered Data-Independent Acquisition Mass Spectrometry-based Quality ControlPossible reference: Gao, H. et al. (2025) iDIA-QC: AI-empowered data-independent acquisition mass spectrometry-based quality control., Nat Commun, PMID 39837863
PXD052868 Dataset with its publication pending (from PRIDE)Dataset title: Mice lacking Astn2 have ASD-like behaviors and altered cerebellar circuit propertiesPossible reference: Hanzel, M. et al. (2024) Mice lacking Astn2 have ASD-like behaviors and altered cerebellar circuit properties., bioRxiv, PMID 38405978
PXD052847 A workflow for targeted proteomics assay development using a versatile linear ion trap. Ariana E. Shannon, Rachael N. Teodorescu, Nojoon Soon, Lilian R. Heil, Cristina C. Jacob, Philip M. Remes, Mark P. Rubinstein, Brian C. Searle
bioRxiv 2024.05.31.5968 (from PanoramaPublic)Dataset title: Linear Ion Trap Global to Targeted Proteomics: A workflow for targeted proteomics assay development using a versatile linear ion trapPossible reference: Shannon, AE. et al. (2024) A workflow for targeted proteomics assay development using a versatile linear ion trap., bioRxiv, PMID 38853838
PXD052840 Dataset with its publication pending (from jPOST)Dataset title: Activity-assembled nBAF complex mediates rapid immediate early gene transcription by regulating RNA Polymerase II productive elongationPossible reference: Cornejo, KG. et al. (2023) Activity-assembled nBAF complex mediates rapid immediate early gene transcription by regulating RNA Polymerase II productive elongation., bioRxiv, PMID 38234780
PXD052825 Dataset with its publication pending (from PRIDE)Dataset title: the Interaction Proteome of Ribosomal 40S Components PNO1 and NOB1 Using TurboID Proximity Labeling TechnologyPossible reference: Xu, X. et al. (2025) The proximity proteome of pre-40S pre-ribosomal particle components PNO1 and NOB1 using turboID proximity labeling technology., Gene, PMID 40157618
PXD052803 Dataset with its publication pending (from PRIDE)Dataset title: Subfamily C7 Raf-like kinases MRK1, RAF26, and RAF39 regulate immune homeostasis and stomatal opening in Arabidopsis thalianaPossible reference: Gonçalves Dias, M. et al. (2024) Subfamily C7 Raf-like kinases MRK1, RAF26, and RAF39 regulate immune homeostasis and stomatal opening in Arabidopsis thaliana., New Phytol, PMID 39449177
PXD052781 Dataset with its publication pending (from iProX)Dataset title: USP5 stabilizes YTHDF1 to control cancer immune surveillance through mTORC1-mediated phosphorylationPossible reference: Shao, N. et al. (2025) USP5 stabilizes YTHDF1 to control cancer immune surveillance through mTORC1-mediated phosphorylation., Nat Commun, PMID 39900921
PXD052769 no publication (from MassIVE)Dataset title: mRNA lipid nanoparticles expressing cell-surface cleavage independent HIV Env trimers elicit autologous tier-2 neutralizing antibodiesPossible reference: Guenaga, J. et al. (2024) mRNA lipid nanoparticles expressing cell-surface cleavage independent HIV Env trimers elicit autologous tier-2 neutralizing antibodies., Front Immunol, PMID 39119336
PXD052763 Dataset with its publication pending (from PRIDE)Dataset title: Zbtb48 is a regulator of Mtfp1 expression in zebrafishPossible reference: Goh, SYC. et al. (2025) Zbtb48 is a regulator of Mtfp1 expression in zebrafish., Commun Biol, PMID 39987415
PXD052751 Dataset with its publication pending (from jPOST)Dataset title: SWATH-Proteomics of Mathurameha in High Glucose-Induced Endothelial DysfunctionPossible reference: Aluksanasuwan, S. et al. (2024) SWATH-proteomics reveals Mathurameha, a traditional anti-diabetic herbal formula, attenuates high glucose-induced endothelial dysfunction through the EGF/NO/IL-1β regulatory axis., J Proteomics, PMID 39047940
PXD052745 Dataset with its publication pending (from PRIDE)Dataset title: Comprehensive Dataset of Interactors for the Entire PARP Family Using TurboID Proximity LabelingPossible reference: Zheng, J. et al. (2025) Comprehensive dataset of interactors for the entire PARP family using TurboID proximity labeling., Sci Data, PMID 40057523
PXD052739 Dataset with its publication pending (from iProX)Dataset title: Stichodactyla haddoni proteomePossible reference: Madio, B. et al. (2017) Revisiting venom of the sea anemone Stichodactyla haddoni: Omics techniques reveal the complete toxin arsenal of a well-studied sea anemone genus., J Proteomics, PMID 28739511
PXD052738 Dataset with its publication pending (from iProX)Dataset title: Single-cell Transcriptomes and Follicular Fluid Proteomics of Ovine Atretic Follicles Reveal the Underlying Mechanisms of Oocyte DegenerationPossible reference: Song, Y. et al. (2025) Oocyte transcriptomes and follicular fluid proteomics of ovine atretic follicles reveal the underlying mechanisms of oocyte degeneration., BMC Genomics, PMID 39893388
PXD052736 Dataset with its publication pending (from iProX)Dataset title: HSP70 and APX1 play important roles in cotton male fertilityPossible reference: Ma, L. et al. (2024) HSP70 and APX1 play important roles in cotton male fertility by mediating ROS homeostasis., Int J Biol Macromol, PMID 39168224
PXD052718 Dataset with its publication pending (from PRIDE)Dataset title: Glycosphingolipid synthesis mediates immune evasion in Kras-driven cancerPossible reference: Soula, M. et al. (2024) Glycosphingolipid synthesis mediates immune evasion in KRAS-driven cancer., Nature, PMID 39112706
PXD052703 Dataset with its publication pending (from PRIDE)Dataset title: The flavonoid-sensing regulator AefR is involved in modulating quorum sensing through repressing the MexEF-OprN efflux pump in Pseudomonas fluorescensPossible reference: Xiao-Quan, Y. et al. (2025) The flavonoid-sensing regulator AefR is involved in modulating quorum sensing through repressing the MexEF-OprN efflux pump in Pseudomonas fluorescens., mSystems, PMID 40013790
PXD052702 Dataset with its publication pending (from PRIDE)Dataset title: The flavonoid-sensing regulator AefR is involved in modulating quorum sensing through repressing the MexEF-OprN efflux pump in Pseudomonas fluorescensPossible reference: Xiao-Quan, Y. et al. (2025) The flavonoid-sensing regulator AefR is involved in modulating quorum sensing through repressing the MexEF-OprN efflux pump in Pseudomonas fluorescens., mSystems, PMID 40013790
PXD052698 Montaser AB, Gao F, Peters D, Vainionpää K, Zhibin N, Skowronska-Krawczyk D, Figeys D, Palczewski K, Leinonen H. Retinal proteome profiling of inherited retinal degeneration across three different mouse models suggests common drug targets in retinitis pig (from PanoramaPublic)Dataset title: Retinal proteome profiling of inherited retinal degeneration across three different mouse models suggests common drug targets in retinitis pigmentosaPossible reference: Montaser, AB. et al. (2024) Retinal Proteome Profiling of Inherited Retinal Degeneration Across Three Different Mouse Models Suggests Common Drug Targets in Retinitis Pigmentosa., Mol Cell Proteomics, PMID 39389360
PXD052661 Dataset with its publication pending (from PRIDE)Dataset title: Krill oil supplementation in vivo promotes increased fuel metabolism and protein synthesis in cultured human skeletal muscle cellsPossible reference: Katare, PB. et al. (2024) Krill oil supplementation in vivo promotes increased fuel metabolism and protein synthesis in cultured human skeletal muscle cells., Front Nutr, PMID 39555189
PXD052619 no publication (from MassIVE)Dataset title: The extracellular serine protease from Staphylococcus epidermidis elicits a type 2-biased immune response in atopic dermatitis patientsPossible reference: Abdurrahman, G. et al. (2024) The extracellular serine protease from Staphylococcus epidermidis elicits a type 2-biased immune response in atopic dermatitis patients., Front Immunol, PMID 38895118
PXD052615 Dataset with its publication pending (from jPOST)Dataset title: Proteomic analysis of human eosinophils stimulated with IFN-gamma and IL-5Possible reference: Pazdrak, K. et al. (2016) Cytokine-Induced Glucocorticoid Resistance from Eosinophil Activation: Protein Phosphatase 5 Modulation of Glucocorticoid Receptor Phosphorylation and Signaling., J Immunol, PMID 27742828
PXD052611 Dataset with its publication pending (from PRIDE)Dataset title: Elusive elapid: Biogeographic venom variation in Indian kraits and its repercussion on snakebite therapyPossible reference: Rashmi, U. et al. (2024) Elusive elapids: biogeographic venom variation in Indian kraits and its repercussion on snakebite therapy., Front Pharmacol, PMID 39575383
PXD052607 Dataset with its publication pending (from iProX)Dataset title: Urine proteome between obese people and normal peoplePossible reference: Dudzik, D. et al. (2014) Metabolic fingerprint of Gestational Diabetes Mellitus., J Proteomics, PMID 24698665
PXD052606 Dataset with its publication pending (from iProX)Dataset title: Identification of WDR11 and its cargo-interaction-defect-mutant interacting proteinsPossible reference: Neocleous, V. et al. (2020) GnRH Deficient Patients With Congenital Hypogonadotropic Hypogonadism: Novel Genetic Findings in ANOS1, RNF216, WDR11, FGFR1, CHD7, and POLR3A Genes in a Case Series and Review of the Literature., Front Endocrinol (Lausanne), PMID 32982993
PXD052598 Montaser AB, Gao F, Peters D, Vainionpää K, Zhibin N, Skowronska-Krawczyk D, Figeys D, Palczewski K, Leinonen H. Retinal proteome profiling of inherited retinal degeneration across three different mouse models suggests common drug targets in retinitis pig (from PanoramaPublic)Dataset title: Retinal proteome profiling of inherited retinal degeneration across three different mouse models suggests common drug targets in retinitis pigmentosaPossible reference: Montaser, AB. et al. (2024) Retinal Proteome Profiling of Inherited Retinal Degeneration Across Three Different Mouse Models Suggests Common Drug Targets in Retinitis Pigmentosa., Mol Cell Proteomics, PMID 39389360
PXD052591 Dataset with its publication pending (from PRIDE)Dataset title: Direct ionic stress sensing and mitigation by the transcription factor NFAT5Possible reference: Khandwala, CB. et al. (2023) Direct ionic stress sensing and mitigation by the transcription factor NFAT5., bioRxiv, PMID 37886503
PXD052578 Dataset with its publication pending (from iProX)Dataset title: Proteomic analysis of UCHL1 conditional knockout micePossible reference: Feng, Z. et al. (2023) The deubiquitinase UCHL1 negatively controls osteoclastogenesis by regulating TAZ/NFATC1 signalling., Int J Biol Sci, PMID 37215988
PXD052550 Dataset with its publication pending (from jPOST)Dataset title: Proteomic analysis of human eosinophils in patients with asthma-COPD overlap and eosinophilic COPDPossible reference: Sunata, K. et al. (2024) Inflammatory profile of eosinophils in asthma-COPD overlap and eosinophilic COPD: a multi-omics study., Front Immunol, PMID 39439801
PXD052527 Dataset with its publication pending (from PRIDE)Dataset title: E3 ligase substrate adaptor SPOP fine tunes the UPR of pancreatic beta cellsPossible reference: Oguh, AU. et al. (2025) E3 ligase substrate adaptor SPOP fine-tunes the UPR of pancreatic β cells., Genes Dev, PMID 39797759
PXD052504 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic Insight into Early Establishment of Seed Dormancy in Xanthium StrumariumPossible reference: Nemati, I. et al. (2024) Proteomic analysis during seed development provides insight into the early establishment of seed dormancy in Xanthium strumarium., Physiol Plant, PMID 39415749
PXD052475 Dataset with its publication pending (from PRIDE)Dataset title: C. albicans cells exhibit specific proteomic profiles depending on the medium used to induce the filamentation processPossible reference: Véronique, L. et al. (2024) Candida albicans cells exhibit media specific proteomic profiles during induction of filamentation., BMC Microbiol, PMID 39592958
PXD052472 Dataset with its publication pending (from PRIDE)Dataset title: Sterol 14-alpha demethylase (CYP51) activity in Leishmania donovani is likely dependent upon cytochrome P450 reductase 1Possible reference: Tulloch, LB. et al. (2024) Sterol 14-alpha demethylase (CYP51) activity in Leishmania donovani is likely dependent upon cytochrome P450 reductase 1., PLoS Pathog, PMID 38991025
PXD052440 Dataset with its publication pending (from PRIDE)Dataset title: Restriction of Arginine Induces Antibiotic Tolerance in Staphylococcus aureusPossible reference: Freiberg, JA. et al. (2023) Restriction of Arginine Induces Antibiotic Tolerance in Staphylococcus aureus., bioRxiv, PMID 37873095
PXD052426 Dataset with its publication pending (from iProX)Dataset title: Chemical proteomic profiling of protein dopaminylation in colorectal cancer cellsPossible reference: Zhang, N. et al. (2024) Chemical proteomic profiling of protein dopaminylation in colorectal cancer cells., bioRxiv, PMID 38712070
PXD052425 Dataset with its publication pending (from iProX)Dataset title: Quantitative phosphoproteomics of Mycolicibacterium smegmatisPossible reference: Abo-Kadoum, MA. et al. (2021) Mycobacterium tuberculosis Raf kinase inhibitor protein (RKIP) Rv2140c is involved in cell wall arabinogalactan biosynthesis via phosphorylation., Microbiol Res, PMID 33189070
PXD052412 Dataset with its publication pending (from PRIDE)Dataset title: An essential role for EROS in redox-dependent endothelial signal transductionPossible reference: Waldeck-Weiermair, M. et al. (2024) An essential role for EROS in redox-dependent endothelial signal transduction., Redox Biol, PMID 38805973
PXD052401 Dataset with its publication pending (from PRIDE)Dataset title: The red alga Porphyridium as a host for molecular farming: Efficient production of immunologically active hepatitis C virus glycoproteinPossible reference: Hammel, A. et al. (2024) The red alga Porphyridium as a host for molecular farming: Efficient production of immunologically active hepatitis C virus glycoprotein., Proc Natl Acad Sci U S A, PMID 38833465
PXD052390 Dataset with its publication pending (from iProX)Dataset title: Genome-scale CRISPRi screen identifies pcnB repression conferring overproduction of free fatty acids in Escherichia coliPossible reference: Fang, L. et al. (2025) Genome-scale CRISPRi screen identifies pcnB repression conferring improved physiology for overproduction of free fatty acids in Escherichia coli., Nat Commun, PMID 40157940
PXD052383 no publication (from MassIVE)Dataset title: diaTracer enables spectrum-centric analysis of diaPASEF proteomics dataPossible reference: Li, K. et al. (2024) diaTracer enables spectrum-centric analysis of diaPASEF proteomics data., bioRxiv, PMID 38854051
PXD052378 Dataset with its publication pending (from PRIDE)Dataset title: Regulation of Drosophila brain development and organ growth by the Minibrain/Rala signaling networkPossible reference: Brown, M. et al. (2024) Regulation of brain development by the Minibrain/Rala signaling network., bioRxiv, PMID 38766038
PXD052367 Dataset with its publication pending (from jPOST)Dataset title: Cysteine S-acetylation is a post-translational modification involved in metabolic regulationPossible reference: Keenan, EK. et al. (2024) Cysteine S-acetylation is a post-translational modification involved in metabolic regulation., bioRxiv, PMID 38826225
PXD052362 Dataset with its publication pending (from PRIDE)Dataset title: Multimodal cell maps as a foundation for structural and functional genomicsPossible reference: Wu, Y. et al. (2024) STASCAN deciphers fine-resolution cell distribution maps in spatial transcriptomics by deep learning., Genome Biol, PMID 39439006
PXD052357 no publication (from MassIVE)Dataset title: Benchmarking and automating the biotinylation proteomics workflowPossible reference: Li, H. et al. (2024) Benchmarking and Automating the Biotinylation Proteomics Workflow., Res Sq, PMID 39011118
PXD052354 no publication (from MassIVE)Dataset title: Online Mixed-Bed Ion Exchange Chromatography for Native Top-Down Proteomics of Complex MixturesPossible reference: Fischer, MS. et al. (2024) Online Mixed-Bed Ion Exchange Chromatography for Native Top-Down Proteomics of Complex Mixtures., J Proteome Res, PMID 38913967
PXD052347 Dataset with its publication pending (from PRIDE)Dataset title: Characterization of the Clostridioides difficile 630Δerm putative Pro-Pro endopeptidase CD1597Possible reference: Claushuis, B. et al. (2024) Characterization of the Clostridioides difficile 630Δerm putative Pro-Pro endopeptidase CD1597., Access Microbiol, PMID 39381498
PXD052337 Dataset with its publication pending (from PRIDE)Dataset title: Inherited mitochondrial dysfunction impacts corneal innervation fibre identity, fonctionnality and regenerative potentialPossible reference: Meneux, L. et al. (2024) Inherited mitochondrial dysfunction triggered by OPA1 mutation impacts the sensory innervation fibre identity, functionality and regenerative potential in the cornea., Sci Rep, PMID 39138286
PXD052325 no publication (from MassIVE)Dataset title: Single-cell signaling analysis reveals that Major Vault Protein facilitates RasG12C inhibitor resistancePossible reference: Zhang, JZ. et al. (2023) Single-cell signaling analysis reveals that Major Vault Protein facilitates RasG12C inhibitor resistance., bioRxiv, PMID 37873412
PXD052315 no publication (from MassIVE)Dataset title: A highly potent bi-thiazole inhibitor of LOX rewires collagen architecture and enhances chemoresponse in triple-negative breast cancerPossible reference: Cetin, M. et al. (2024) A highly potent bi-thiazole inhibitor of LOX rewires collagen architecture and enhances chemoresponse in triple-negative breast cancer., Cell Chem Biol, PMID 39043186
PXD052288 Dataset with its publication pending (from PRIDE)Dataset title: Pangolin scales as adaptations for innate immunity against pathogensPossible reference: Tian, X. et al. (2024) Pangolin scales as adaptations for innate immunity against pathogens., BMC Biol, PMID 39397000
PXD052273 no publication (from MassIVE)Dataset title: FOXA2 rewires AP-1 for transcriptional reprogramming and lineage plasticity in prostate cancerPossible reference: Wang, Z. et al. (2024) FOXA2 rewires AP-1 for transcriptional reprogramming and lineage plasticity in prostate cancer., Nat Commun, PMID 38851846
PXD052263 no publication (from MassIVE)Dataset title: The influence of APOE4 on the pTau interactome in sporadic Alzheimers diseasePossible reference: Thierry, M. et al. (2024) The influence of APOEε4 on the pTau interactome in sporadic Alzheimer's disease., Acta Neuropathol, PMID 38772917
PXD052255 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic dataset of two contrasting sorghum genotypes to drought, heat and combined drought and heat stressPossible reference: Ali, AEE. et al. (2025) Proteomic dataset of sorghum leaf and root responses to single and combined drought and heat stress., Sci Data, PMID 39824864
PXD052250 Dataset with its publication pending (from PRIDE)Dataset title: Persistent epithelial barrier dysfunction and Periostin accumulation in histologic remission Eosinophilic EsophagitisPossible reference: Hoelz, H. et al. (2025) Persistent desmoglein-1 downregulation and periostin accumulation in histologic remission of eosinophilic esophagitis., J Allergy Clin Immunol, PMID 39343172
PXD052242 Dataset with its publication pending (from iProX)Dataset title: High-fat diet alters retinal lipid composition and gene expression networks in micePossible reference: Zou, R. et al. (2025) High-fat diet alters retinal lipid composition and gene expression networks in mice., BMC Biol, PMID 40247316
PXD052239 Dataset with its publication pending (from iProX)Dataset title: SNAP47 acetylation-dependent regulatory mechanism governing autophagosome-lysosome fusion by modulating the recruitment of HOPS to autophagic vacuolesPossible reference: Jian, F. et al. (2025) Deacetylated SNAP47 recruits HOPS to facilitate autophagosome-lysosome fusion independent of STX17., Nat Commun, PMID 39788987
PXD052229 Dataset with its publication pending (from PRIDE)Dataset title: Multi-omics analysis reveals the impact of influenza A virus host adaptation on immune signatures in pig tracheal tissuePossible reference: Laybourn, HA. et al. (2024) Multi-omics analysis reveals the impact of influenza a virus host adaptation on immune signatures in pig tracheal tissue., Front Immunol, PMID 39247193
PXD052200 Dataset with its publication pending (from jPOST)Dataset title: Proteomic analysis of human eosinophils stimulated with IL-4 and IL-5 Possible reference: Pazdrak, K. et al. (2016) Cytokine-Induced Glucocorticoid Resistance from Eosinophil Activation: Protein Phosphatase 5 Modulation of Glucocorticoid Receptor Phosphorylation and Signaling., J Immunol, PMID 27742828
PXD052172 Dataset with its publication pending (from PRIDE)Dataset title: A chemoenzymatic method for simultaneous profiling N- and O-glycans on glycoproteins using one-pot formatPossible reference: Ortega-Rodriguez, U. et al. (2024) A chemoenzymatic method for simultaneous profiling N- and O-glycans on glycoproteins using one-pot format., Cell Rep Methods, PMID 39116882
PXD052154 Dataset with its publication pending (from PRIDE)Dataset title: The temporal dynamics of proteins in aged skin wound healing and comparison to gene expression Possible reference: Torres, M. et al. (2024) The Temporal Dynamics of Proteins in Aged Skin Wound Healing and Comparison with Gene Expression., J Invest Dermatol, PMID 39675661
PXD052147 Dataset with its publication pending (from jPOST)Dataset title: SHIP1 modulation and proteome characterization of microgliaPossible reference: Ahat, E. et al. (2024) SHIP1 modulation and proteome characterization of microglia., J Proteomics, PMID 38777089
PXD052115 Dataset with its publication pending (from PRIDE)Dataset title: hnRNP R promotes O-GlcNAcylation of eIF4G to facilitate axonal protein synthesisPossible reference: Zare, A. et al. (2024) hnRNP R promotes O-GlcNAcylation of eIF4G and facilitates axonal protein synthesis., Nat Commun, PMID 39198412
PXD052107 Dataset with its publication pending (from PRIDE)Dataset title: Strigolactones positively regulate HY5-dependent autophagy and the degradation of ubiquitinated proteins in response to cold stress in tomatoPossible reference: Chi, C. et al. (2025) Strigolactones positively regulate HY5-dependent autophagy and the degradation of ubiquitinated proteins in response to cold stress in tomato., New Phytol, PMID 39155750
PXD052070 Dataset with its publication pending (from PRIDE)Dataset title: Acarbose Primarily Targets Intracellular GH97 Enzymes in Bacteroides to Impair Their GrowthPossible reference: Brown, HA. et al. (2024) Acarbose Impairs Gut Bacteroides Growth by Targeting Intracellular GH97 Enzymes., bioRxiv, PMID 38826241
PXD052034 Dataset with its publication pending (from PRIDE)Dataset title: Two H3K23 histone methyltransferases, SET-32 and SET-21, function synergistically to promote nuclear RNAi-mediated transgenerational epigenetic inheritance in Caenorhabditis elegansPossible reference: Zhebrun, A. et al. (2024) Two H3K23 histone methyltransferases, SET-32 and SET-21, function synergistically to promote nuclear RNAi-mediated transgenerational epigenetic inheritance in Caenorhabditis elegans., bioRxiv, PMID 39574755
PXD052023 no publication (from MassIVE)Dataset title: Signal transduction pathways controlling Ins2 gene activity and beta cell state transitionsPossible reference: Chu, CM. et al. (2025) Signal transduction pathways controlling Ins2 gene activity and beta cell state transitions., iScience, PMID 40144638
PXD051999 Dataset with its publication pending (from iProX)Dataset title: Serum proteomics data of patients with brucellosisPossible reference: Wu, Q. et al. (2024) Preparation and application of a Brucella multiepitope fusion protein based on bioinformatics and Tandem Mass Tag-based proteomics technology., Front Immunol, PMID 39867886
PXD051998 Dataset with its publication pending (from iProX)Dataset title: Effects of Chlorogenic Acid on Hepatocytes: From Beneficial Effects to Potential ToxicityPossible reference: García-Varela, R. et al. (2016) Cancer cell specific cytotoxic effect of Rhoeo discolor extracts and solvent fractions., J Ethnopharmacol, PMID 27235722
PXD051993 no publication (from MassIVE)Dataset title: MI-AEG-TKK-YL-JSB_8LFQ_ ARL5_ARMH3Possible reference: Ishida, M. et al. (2024) ARMH3 is an ARL5 effector that promotes PI4KB-catalyzed PI4P synthesis at the trans-Golgi network., Nat Commun, PMID 39580461
PXD051988 no publication (from MassIVE)Dataset title: MI-AEG-TKK-YL-JSB_15LFQ_ARL5A_ARL5BPossible reference: Houghton, FJ. et al. (2012) Arl5b is a Golgi-localised small G protein involved in the regulation of retrograde transport., Exp Cell Res, PMID 22245584
PXD051964 Dataset with its publication pending (from PRIDE)Dataset title: Exploring modes of microbial interactions with implications for methane cycling.Possible reference: Brenzinger, K. et al. (2024) Exploring modes of microbial interactions with implications for methane cycling., FEMS Microbiol Ecol, PMID 39122657
PXD051940 no publication (from MassIVE)Dataset title: TermineR: extracting information on proteolytic processing from shotgun proteomics data Possible reference: Cosenza-Contreras, M. et al. (2024) TermineR: Extracting information on endogenous proteolytic processing from shotgun proteomics data., Proteomics, PMID 39126236
PXD051927 Dataset with its publication pending (from PRIDE)Dataset title: Lysosomal damage triggers a p38 MAPK-dependent phosphorylation cascade to promote lysophagy via the small heat shock protein HSP27Possible reference: Gallagher, ER. et al. (2024) Lysosomal damage triggers a p38 MAPK-dependent phosphorylation cascade to promote lysophagy via the small heat shock protein HSP27., Curr Biol, PMID 39541976
PXD051921 Dataset with its publication pending (from PRIDE)Dataset title: Untargeted metabolomics in gastric and colorectal patients - preliminary resultsPossible reference: Kaźmierczak-Siedlecka, K. et al. (2024) Untargeted metabolomics in gastric and colorectal cancer patients - preliminary results., Front Cell Infect Microbiol, PMID 38774628
PXD051912 Dataset with its publication pending (from PRIDE)Dataset title: DLG1 functions upstream of SDCCAG3 and IFT20 to control ciliary targeting of polycystin-2Possible reference: Rezi, CK. et al. (2024) DLG1 functions upstream of SDCCAG3 and IFT20 to control ciliary targeting of polycystin-2., bioRxiv, PMID 37987012
PXD051908 Dataset with its publication pending (from jPOST)Dataset title: Rubicon-interactome-nutrient-starvation_HeLa-Kyoto-cellPossible reference: Shirmanova, MV. et al. (2013) Phototoxic effects of fluorescent protein KillerRed on tumor cells in mice., J Biophotonics, PMID 22696211
PXD051884 Dataset with its publication pending (from PRIDE)Dataset title: TRAF7 determines circadian period through ubiquitination and degradation of DBPPossible reference: Masuda, S. et al. (2024) TRAF7 determines circadian period through ubiquitination and degradation of DBP., Commun Biol, PMID 39379486
PXD051883 Dataset with its publication pending (from jPOST)Dataset title: The BAF complex enhances transcription through interaction with H3K56ac in the histone globular domainPossible reference: Hyun, K. et al. (2024) The BAF complex enhances transcription through interaction with H3K56ac in the histone globular domain., Nat Commun, PMID 39511190
PXD051879 Dataset with its publication pending (from PRIDE)Dataset title: Tracking the dynamics of the glycolytic metabolite fructose 1,6-bisphosphate in liver cancer cells with a fluorescent biosensorPossible reference: Pérez-Chávez, I. et al. (2024) Tracking fructose 1,6-bisphosphate dynamics in liver cancer cells using a fluorescent biosensor., iScience, PMID 39640569
PXD051871 Dataset with its publication pending (from iProX)Dataset title: Serum proteomic of hepatocellular carcinoma patients co-infected with Clonorchis sinensisPossible reference: Tang, Z. et al. (2024) Serum proteomic and metabolomic profiling of hepatocellular carcinoma patients co-infected with Clonorchis sinensis., Front Immunol, PMID 39840062
PXD051860 Dataset with its publication pending (from jPOST)Dataset title: Changes in Protein Fluxes and Gene Expression in Non-Injured Muscle Tissue Distant from an Acute Myotoxic Injury in Male MicePossible reference: Bizieff, A. et al. (2024) Changes in protein fluxes and gene expression in non-injured muscle tissue distant from an acute myotoxic injury in male mice., J Physiol, PMID 38968395
PXD051812 Dataset with its publication pending (from iProX)Dataset title: Integration of transcriptome and proteome reveals relevant myelin features in ischaemic stroke micePossible reference: Qian, Q. et al. (2025) Combined transcriptomic and proteomic analyses reveal relevant myelin features in mice with ischemic stroke., Funct Integr Genomics, PMID 40085348
PXD051784 Dataset with its publication pending (from jPOST)Dataset title: Bioinformatics-Guided Identification and Quantification of Biomarkers of Crotalus atrox Envenoming and its Neutralization by AntivenomPossible reference: Bala, AA. et al. (2025) Bioinformatics-Guided Identification and Quantification of Biomarkers of Crotalus atrox Envenoming and its Neutralization by Antivenom., Mol Cell Proteomics, PMID 40147718
PXD051782 Dataset with its publication pending (from PRIDE)Dataset title: The DEAD-box RNA helicase PfDOZI imposes opposing actions on RNA metabolism in Plasmodium falciparumPossible reference: Min, H. et al. (2024) The DEAD-box RNA helicase PfDOZI imposes opposing actions on RNA metabolism in Plasmodium falciparum., Nat Commun, PMID 38702310
PXD051778 Dataset with its publication pending (from PRIDE)Dataset title: A proteomics approach to isolating neuropilin-dependent α5 integrin trafficking pathways: neuropilin 1 and 2 co-traffic α5 integrin through endosomal p120RasGAP to promote polarised fibronectin fibrillogenesis in endothelial cellsPossible reference: Benwell, CJ. et al. (2024) A proteomics approach to isolating neuropilin-dependent α5 integrin trafficking pathways: neuropilin 1 and 2 co-traffic α5 integrin through endosomal p120RasGAP to promote polarised fibronectin fibrillogenesis in endothelial cells., Commun Biol, PMID 38789481
PXD051762 Dataset with its publication pending (from PRIDE)Dataset title: Covalent 14-3-3 Molecular Glues and Heterobifunctional Molecules Against Nuclear Transcription Factors and RegulatorsPossible reference: Shao, Q. et al. (2023) Covalent 14-3-3 Molecular Glues and Heterobifunctional Molecules Against Nuclear Transcription Factors and Regulators., bioRxiv, PMID 37986959
PXD051720 Dataset with its publication pending (from PRIDE)Dataset title: STK19 drives transcription-coupled nucleotide excision repair by stimulating Pol II ubiquitylation and TFIIH recruitmentPossible reference: Ramadhin, AR. et al. (2024) STK19 drives transcription-coupled repair by stimulating repair complex stability, RNA Pol II ubiquitylation, and TFIIH recruitment., Mol Cell, PMID 39547223
PXD051703 Dataset with its publication pending (from PRIDE)Dataset title: Aerobic Adaptation and Metabolic Dynamics of Propionibacterium freudenreichii DSM 20271: Insights from Comparative Transcriptomics and Surfaceome AnalysisPossible reference: Loivamaa, I. et al. (2024) Aerobic adaptation and metabolic dynamics of Propionibacterium freudenreichii DSM 20271: insights from comparative transcriptomics and surfaceome analysis., mSystems, PMID 39345151
PXD051702 no publication (from MassIVE)Dataset title: Proteomic insights into the impact of COVID-19 on peripheral blood mononuclear cells in kidney transplant recipientsPossible reference: Leite, GGF. et al. (2024) Proteomic profiling of peripheral blood mononuclear cells reveals immune dysregulation and metabolic alterations in kidney transplant recipients with COVID-19., Front Immunol, PMID 39737170
PXD051693 Dataset with its publication pending (from PRIDE)Dataset title: Single electron transfer between sulfonium and tryptophan enables site-selective photo crosslinking of methyllysine reader proteinsPossible reference: Feng, F. et al. (2024) Single-electron transfer between sulfonium and tryptophan enables site-selective photo crosslinking of methyllysine reader proteins., Nat Chem, PMID 39079947
PXD051681 Dataset with its publication pending (from iProX)Dataset title: Biallelic mutations in DNAH12 cause asthenoteratozoospermia in humans and micePossible reference: Yang, M. et al. (2025) Deficiency in DNAH12 causes male infertility by impairing DNAH1 and DNALI1 recruitment in humans and mice., Elife, PMID 40146200
PXD051662 Dataset with its publication pending (from PRIDE)Dataset title: Cytoplasmic mRNA decay controlling inflammatory gene expression is determined by pre-mRNA fate decisionPossible reference: Bestehorn, A. et al. (2025) Cytoplasmic mRNA decay controlling inflammatory gene expression is determined by pre-mRNA fate decision., Mol Cell, PMID 39862867
PXD051655 Dataset with its publication pending (from iProX)Dataset title: SRXN1 Accelerates Erastin-Induced Ferroptosis in HT-22 Hippocampal Neurons by Driving HO-1 ActivationPossible reference: Guo, S. et al. (2024) Sulfiredoxin-1 accelerates erastin-induced ferroptosis in HT-22 hippocampal neurons by driving heme Oxygenase-1 activation., Free Radic Biol Med, PMID 39159887
PXD051654 Dataset with its publication pending (from iProX)Dataset title: Characterization of dsRNA Binding Proteins through Solubility Analysis Identifies ZNF385A as a dsRNA Homeostasis RegulatorPossible reference: Jiang, N. et al. (2025) Characterization of dsRNA binding proteins through solubility analysis identifies ZNF385A as a dsRNA homeostasis regulator., Nat Commun, PMID 40210660
PXD051638 Dataset with its publication pending (from PRIDE)Dataset title: DDA1, a novel factor in transcription-coupled repair, modulates CRL4CSA dynamics at DNA damage-stalled RNA polymerase IIPossible reference: Schiffmacher, DL. et al. (2023) DDA1, a novel factor in transcription-coupled repair, modulates CRL4CSA dynamics at DNA damage-stalled RNA polymerase II., Res Sq, PMID 37886519
PXD051636 Dataset with its publication pending (from iProX)Dataset title: MARTRE family proteins negatively regulate CCR4-NOT activity to protect poly(A) tail length and promote translation of maternal mRNAPossible reference: Yang, J. et al. (2025) MARTRE family proteins negatively regulate CCR4-NOT activity to protect poly(A) tail length and promote translation of maternal mRNA., Nat Commun, PMID 39747175
PXD051631 Dataset with its publication pending (from iProX)Dataset title: Burkholderia pseudomallei BipD hijacks host KLHL9/KLHL13/CUL3 E3 ligase to ubiquitinate IMMT that initiates mitophagy to evade killingPossible reference: Nan, D. et al. (2024) Burkholderia pseudomallei BipD modulates host mitophagy to evade killing., Nat Commun, PMID 38834545
PXD051593 Dataset with its publication pending (from PRIDE)Dataset title: Spatial hepatocyte plasticity of gluconeogenesis during the metabolic transitions between fed, fasted and starvation statesPossible reference: Okada, J. et al. (2024) Spatial hepatocyte plasticity of gluconeogenesis during the metabolic transitions between fed, fasted and starvation states., bioRxiv, PMID 38746329
PXD051582 Dataset with its publication pending (from PRIDE)Dataset title: Rat right ventricular proteomes after cell therapyPossible reference: Bateman, RM. et al. (2016) 36th International Symposium on Intensive Care and Emergency Medicine : Brussels, Belgium. 15-18 March 2016., Crit Care, PMID 27885969
PXD051571 Dataset with its publication pending (from jPOST)Dataset title: Pronounced expression of extracellular matrix proteoglycans regulated by Wnt pathway underlies the parallel evolution of lip hypertrophy in East African cichlidsPossible reference: Machii, N. et al. (2025) Pronounced expression of extracellular matrix proteoglycans regulated by Wnt pathway underlies the parallel evolution of lip hypertrophy in East African cichlids., Elife, PMID 40259743
PXD051567 no publication (from MassIVE)Dataset title: Cold Storage Disrupts the Proteome Landscape in Rat Kidney Transplants Possible reference: Sharma, A. et al. (2025) Cold Storage Disrupts the Proteome and Phosphoproteome Landscape in Rat Kidney Transplants., Transplantation, PMID 39716351
PXD051561 no publication (from MassIVE)Dataset title: High-density CRISPRi screens reveal adaptive transcriptional gradients in cyanobacteriaPossible reference: Hren, A. et al. (2025) High-density CRISPRi screens reveal diverse routes to improved acclimation in cyanobacteria., Proc Natl Acad Sci U S A, PMID 40117303
PXD051544 Dataset with its publication pending (from jPOST)Dataset title: Cold Atmospheric Plasma Jet Promotes Wound Healing through CK2- coordinated PI3K/AKT and MAPK Signaling PathwaysPossible reference: Wu, PS. et al. (2025) Cold Atmospheric Plasma Jet Promotes Wound Healing through CK2-coordinated PI3K/AKT and MAPK Signaling Pathways., Mol Cell Proteomics, PMID 40187493
PXD051532 Dataset with its publication pending (from iProX)Dataset title: Identification of WNK1 as a therapeutic target to suppress IgH/MYC expression in multiple myelomaPossible reference: Ye, T. et al. (2024) Identification of WNK1 as a therapeutic target to suppress IgH/MYC expression in multiple myeloma., Cell Rep, PMID 38722741
PXD051523 Dataset with its publication pending (from jPOST)Dataset title: RNA-binding proteins control glycolysis via regulation of mRNA stability under chronic hypoxiaPossible reference: Ogura, Y. et al. (2025) Fragile X messenger ribonucleoprotein 1 (FMRP) regulates glycolytic gene expression under chronic hypoxia in HCT116 cells., Sci Rep, PMID 40246883
PXD051511 Dataset with its publication pending (from iProX)Dataset title: Quantitative DIA-Based proteomics of three-year-old and two-year-old Eriocheir sinensisPossible reference: Li, Q. et al. (2025) Quantitative DIA-based proteomics unveils ribosomal biogenesis pathways associated with increased final size in three-year-old Chinese mitten crab (Eriocheir sinensis)., BMC Genomics, PMID 39825215
PXD051510 Dataset with its publication pending (from iProX)Dataset title: Proteomic analysis in Eucalyptus urophylla × Eucalyptus grandisPossible reference: Yao, X. et al. (2021) The physiological and molecular mechanisms of N transfer in Eucalyptus and Dalbergia odorifera intercropping systems using root proteomics., BMC Plant Biol, PMID 33902455
PXD051489 Dataset with its publication pending (from PRIDE)Dataset title: Spatiotemporal proteomic profiling of cellular responses to NLRP3 agonistsPossible reference: Hollingsworth, LR. et al. (2024) Spatiotemporal proteomic profiling of cellular responses to NLRP3 agonists., bioRxiv, PMID 38659763
PXD051484 Dataset with its publication pending (from PRIDE)Dataset title: Global lysine succinylation analysis unveils post-translational regulation effect on phenylpropanoids metabolism remodeling during Lonicera japonica flowering developmentPossible reference: Chen, Y. et al. (2024) Global lysine succinylation analysis unveils post-translational regulation effect on phenylpropanoid metabolism remodeling during Lonicera japonica flower development., Plant Physiol Biochem, PMID 39084169
PXD051473 Dataset with its publication pending (from PRIDE)Dataset title: GABA/Glutamate neuron differentiation imbalance and increased AKT/mTOR signalling in CNTNAP2-/- cerebral organoidsPossible reference: Chalkiadaki, K. et al. (2025) GABA/Glutamate Neuron Differentiation Imbalance and Increased AKT/mTOR Signaling in CNTNAP2-/- Cerebral Organoids., Biol Psychiatry Glob Open Sci, PMID 39758604
PXD051454 Dataset with its publication pending (from PRIDE)Dataset title: Acetylomics reveals an extensive acetylation diversity within Pseudomonas aeruginosaPossible reference: Broeckaert, N. et al. (2024) Acetylomics reveals an extensive acetylation diversity within Pseudomonas aeruginosa., Microlife, PMID 39464744
PXD051436 Dataset with its publication pending (from iProX)Dataset title: Quantitative Site-specific N-glycosylation Analysis Reveals IgG Glyco-signatures for Pancreatic Cancer DiagnosisPossible reference: Jin, Y. et al. (2024) Quantitative site-specific N-glycosylation analysis reveals IgG glyco-signatures for pancreatic cancer diagnosis., Clin Proteomics, PMID 39734184
PXD051431 Dataset with its publication pending (from PRIDE)Dataset title: Pharmacological Targeting of Casein Kinase 1δ Suppresses Oncogenic NRAS-Driven MelanomaPossible reference: Wen, Y. et al. (2024) Pharmacological targeting of casein kinase 1δ suppresses oncogenic NRAS-driven melanoma., Nat Commun, PMID 39572526
PXD051421 Dataset with its publication pending (from jPOST)Dataset title: Plasma Extracellular Vesicle Proteomic Profiling from Parkinsonism PatientsPossible reference: Minakaki, G. et al. (2018) Autophagy inhibition promotes SNCA/alpha-synuclein release and transfer via extracellular vesicles with a hybrid autophagosome-exosome-like phenotype., Autophagy, PMID 29198173
PXD051392 Dataset with its publication pending (from PRIDE)Dataset title: Proteome of fission yeast RNA degradation mutantsPossible reference: Bitton, DA. et al. (2015) Widespread exon skipping triggers degradation by nuclear RNA surveillance in fission yeast., Genome Res, PMID 25883323
PXD051349 Dataset with its publication pending (from iProX)Dataset title: Exosomes derived from syncytia induced by SARS-2-S promote the proliferation and metastasis of hepatocellular carcinoma cellsPossible reference: Li, H. et al. (2024) Exosomes derived from syncytia induced by SARS-2-S promote the proliferation and metastasis of hepatocellular carcinoma cells., Front Cell Infect Microbiol, PMID 39844837
PXD051347 Dataset with its publication pending (from PRIDE)Dataset title: Proteomics profiling of the honeybee parasite Tropilaelpas mercedesae across post-embryonic developmentPossible reference: Wei, Q. et al. (2024) Proteomics profiling of the honeybee parasite Tropilaelaps mercedesae across post-embryonic development., Sci Data, PMID 38750068
PXD051328 Dataset with its publication pending (from iProX)Dataset title: Fluorescence imaging sheds light on the immune evasion mechanisms of hepatic stellate cells mediated by superoxide anionPossible reference: Mao, Y. et al. (2024) Fluorescence imaging sheds light on the immune evasion mechanisms of hepatic stellate cells mediated by superoxide anion., Commun Biol, PMID 38730013
PXD051286 Dataset with its publication pending (from iProX)Dataset title: Proteomics of Rabbit Atherosclerotic PlaquesPossible reference: Rather, RA. et al. (2016) Aqueous Terminalia arjuna extract modulates expression of key atherosclerosis-related proteins in a hypercholesterolemic rabbit: A proteomic-based study., Proteomics Clin Appl, PMID 26934842
PXD051284 Dataset with its publication pending (from iProX)Dataset title: Proteomics of mice modeling NAFLD and after treatment with a novel chrysin derivativePossible reference: Zhang, R. et al. (2024) Synthesis and biological evaluation of the novel chrysin prodrug for non-alcoholic fatty liver disease treatment., Front Pharmacol, PMID 38708081
PXD051282 Dataset with its publication pending (from iProX)Dataset title: Urinary proteomic analysis of HGSOCPossible reference: Ni, M. et al. (2024) Candidate prognostic biomarkers and prediction models for high-grade serous ovarian cancer from urinary proteomics., J Proteomics, PMID 38925351
PXD051276 no publication (from MassIVE)Dataset title: Metabolomics reveals the importance of metabolites in Mussaenda pubescens for antioxidant properties and quality traitsPossible reference: Zhou, C. et al. (2024) Metabolomics reveals the importance of metabolites in Mussaenda pubescens for antioxidant properties and quality traits., Physiol Plant, PMID 38628104
PXD051275 Dataset with its publication pending (from PRIDE)Dataset title: Selective Mitochondrial Respiratory Complex I Subunit Deficiency Causes Tumor ImmunogenicityPossible reference: Liang, J. et al. (2023) Selective Mitochondrial Respiratory Complex I Subunit Deficiency Causes Tumor Immunogenicity., bioRxiv, PMID 37873273
PXD051262 no publication (from MassIVE)Dataset title: Liver and Pancreatic-Targeted Interleukin-22 as a Therapeutic for Metabolic Dysfunction-Associated SteatohepatitisPossible reference: Sajiir, H. et al. (2024) Liver and pancreatic-targeted interleukin-22 as a therapeutic for metabolic dysfunction-associated steatohepatitis., Nat Commun, PMID 38811532
PXD051246 Dataset with its publication pending (from PRIDE)Dataset title: Neutrophil-derived migrasomes are an essential part of the coagulation systemPossible reference: Jiang, D. et al. (2024) Neutrophil-derived migrasomes are an essential part of the coagulation system., Nat Cell Biol, PMID 38997457
PXD051245 Dataset with its publication pending (from iProX)Dataset title: Clinical study on the plasma of COVID-19 vaccination and breakthrough infectionPossible reference: Zhu, X. et al. (2023) Dynamics of inflammatory responses after SARS-CoV-2 infection by vaccination status in the USA: a prospective cohort study., Lancet Microbe, PMID 37659419
PXD051238 Dataset with its publication pending (from PRIDE)Dataset title: Neutrophil-derived migrasomes are an essential part of the coagulation systemPossible reference: Jiang, D. et al. (2024) Neutrophil-derived migrasomes are an essential part of the coagulation system., Nat Cell Biol, PMID 38997457
PXD051231 Dataset with its publication pending (from PRIDE)Dataset title: Neutrophil-derived migrasomes are an essential part of the coagulation systemPossible reference: Jiang, D. et al. (2024) Neutrophil-derived migrasomes are an essential part of the coagulation system., Nat Cell Biol, PMID 38997457
PXD051229 Dataset with its publication pending (from PRIDE)Dataset title: Neutrophil-derived migrasomes are an essential part of the coagulation systemPossible reference: Jiang, D. et al. (2024) Neutrophil-derived migrasomes are an essential part of the coagulation system., Nat Cell Biol, PMID 38997457
PXD051224 Dataset with its publication pending (from PRIDE)Dataset title: Copper(I)-Nitrene Platform for Chemoproteomics Profiling of MethioninePossible reference: Sahu, S. et al. (2024) Copper(I)-nitrene platform for chemoproteomic profiling of methionine., Nat Commun, PMID 38762540
PXD051223 Dataset with its publication pending (from PRIDE)Dataset title: metabolic tuning of mixed purple phototrophic bacteria biofilms in photoheterotrophic conditionsPossible reference: Díaz-Rullo Edreira, S. et al. (2024) Elucidating metabolic tuning of mixed purple phototrophic bacteria biofilms in photoheterotrophic conditions through microbial photo-electrosynthesis., Commun Biol, PMID 39557963
PXD051216 Dataset with its publication pending (from PRIDE)Dataset title: Deciphering hepatitis B virus phospho-signature in primary human hepatocytesPossible reference: Pastor, F. et al. (2024) Deciphering the phospho-signature induced by hepatitis B virus in primary human hepatocytes., Front Microbiol, PMID 38841065
PXD051202 Dataset with its publication pending (from PRIDE)Dataset title: The SPFH complex HflK-HflC regulates aerobic respiration in bacteriaPossible reference: Pérez-López, MI. et al. (2025) The SPFH complex HflK-HflC regulates aerobic respiration in bacteria., PLoS Biol, PMID 40193326
PXD051182 Dataset with its publication pending (from PRIDE)Dataset title: Exploring the early molecular pathogenesis of osteoarthritis using differential network analysis of human synovial fluidPossible reference: Shay, JW. et al. (2016) Abstracts from the 3rd International Genomic Medicine Conference (3rd IGMC 2015) : Jeddah, Kingdom of Saudi Arabia. 30 November - 3 December 2015., BMC Genomics, PMID 27454254
PXD051146 Dataset with its publication pending (from PRIDE)Dataset title: Pathogenic Proteotoxicity of Cryptic Splicing is Alleviated by Ubiquitination and ER-PhagyPossible reference: Prieto-Garcia, C. et al. (2024) Pathogenic proteotoxicity of cryptic splicing is alleviated by ubiquitination and ER-phagy., Science, PMID 39541449
PXD051130 Dataset with its publication pending (from PRIDE)Dataset title: Netrin-1 engineered endothelial cell exosomes induce the formation of pre-regenerative niche to accelerate peripheral nerve repairPossible reference: Huang, J. et al. (2024) Netrin-1-engineered endothelial cell exosomes induce the formation of pre-regenerative niche to accelerate peripheral nerve repair., Sci Adv, PMID 38941462
PXD051129 Dataset with its publication pending (from jPOST)Dataset title: Mitochondria inside acute myeloid leukemia cells hydrolyze ATP to resist chemotherapyPossible reference: Hagen, JT. et al. (2024) Acute myeloid leukemia mitochondria hydrolyze ATP to resist chemotherapy., bioRxiv, PMID 38659944
PXD051128 Dataset with its publication pending (from PRIDE)Dataset title: GPATCH8 modulates mutant SF3B1 mis-splicing and pathogenicity in hematologic malignanciesPossible reference: Benbarche, S. et al. (2024) GPATCH8 modulates mutant SF3B1 mis-splicing and pathogenicity in hematologic malignancies., Mol Cell, PMID 38688280
PXD051120 Dataset with its publication pending (from iProX)Dataset title: Effect of SJQYD alleviate Sjögren’s Syndrome on protein expression of NOD/LTJ micePossible reference: Wang, D. et al. (2020) Suppression of high-mobility group box 1 ameliorates xerostomia in a Sjögren syndrome-triggered mouse model., Can J Physiol Pharmacol, PMID 31935120
PXD051119 Dataset with its publication pending (from iProX)Dataset title: RH3 enhances antiviral defense by facilitating small RNA loading into Argonaute 2Possible reference: Huang, J. et al. (2025) RH3 enhances antiviral defense by facilitating small RNA loading into Argonaute 2 at endoplasmic reticulum-chloroplast membrane contact sites., Nat Commun, PMID 40000658
PXD051118 Dataset with its publication pending (from iProX)Dataset title: Remoulding probiotics for effective treatment of type 2 diabetes via oral administrationPossible reference: Ji, H. et al. (2025) Remolding probiotics for effective treatment of type 2 diabetes via oral administration., Biomaterials, PMID 39577036
PXD051080 Dataset with its publication pending (from iProX)Dataset title: TMT-Based Quantitative Proteomic Profiling of Human Esophageal Cancer Cells Reveals the Potential Mechanism and Potential Therapeutic Targets Associated with Radio-ResistancePossible reference: Gao, A. et al. (2025) TMT-Based Quantitative Proteomic Profiling of Human Esophageal Cancer Cells Reveals the Potential Mechanism and Potential Therapeutic Targets Associated With Radioresistance., Proteomics Clin Appl, PMID 39375892
PXD051077 Dataset with its publication pending (from iProX)Dataset title: Proteomic analysis of giant panda spermPossible reference: Anel-López, L. et al. (2017) Analysis of seminal plasma from brown bear (Ursus arctos) during the breeding season: Its relationship with testosterone levels., PLoS One, PMID 28771486
PXD051075 Dataset with its publication pending (from PRIDE)Dataset title: Conventional cell fixation improves performance of in situ crosslinking mass spectrometry while preserving cellular ultrastructurePossible reference: Michael, ARM. et al. (2024) Cell fixation improves performance of in situ crosslinking mass spectrometry while preserving cellular ultrastructure., Nat Commun, PMID 39358380
PXD051063 Dataset with its publication pending (from PRIDE)Dataset title: Comana monomorpha caterpillar venom proteomicsPossible reference: Goudarzi, MH. et al. (2024) Phylogeny, envenomation syndrome, and membrane permeabilising venom produced by Australia's electric caterpillar Comana monomorpha., Sci Rep, PMID 38898081
PXD051062 Dataset with its publication pending (from PRIDE)Dataset title: A comparative analysis of digestion methods for bile proteomics: the key to unlocking biliary biomarker potential in liver transplantationPossible reference: Thorne, AM. et al. (2024) Comparative Analysis of Digestion Methods for Bile Proteomics: The Key to Unlocking Biliary Biomarker Potential., Anal Chem, PMID 39186690
PXD051051 Dataset with its publication pending (from iProX)Dataset title: Comprehensive mass spectral libraries of human thyroid tissue and cellsPossible reference: Li, L. et al. (2024) Comprehensive Mass Spectral Libraries of Human Thyroid Tissues and Cells., Sci Data, PMID 39732735
PXD051048 Dataset with its publication pending (from iProX)Dataset title: The Transcription factor FgSfp1 orchestrates mycotoxin deoxynivalenol biosynthesis in Fusarium graminearumPossible reference: Sun, S. et al. (2024) The transcription factor FgSfp1 orchestrates mycotoxin deoxynivalenol biosynthesis in Fusarium graminearum., Commun Biol, PMID 39604708
PXD051022 Dataset with its publication pending (from PRIDE)Dataset title: Shared behavioural impairments in visual perception and place avoidance across different autism models are driven by periaqueductal grey hypoexcitability in Setd5 haploinsufficient mice.Possible reference: Burnett, LE. et al. (2024) Shared behavioural impairments in visual perception and place avoidance across different autism models are driven by periaqueductal grey hypoexcitability in Setd5 haploinsufficient mice., PLoS Biol, PMID 38857283
PXD051018 Dataset with its publication pending (from PRIDE)Dataset title: Insulin and IGF1 receptor function in murine podocytesPossible reference: Wen, ZZ. et al. (2013) Angiotensin II receptor blocker attenuates intrarenal renin-angiotensin-system and podocyte injury in rats with myocardial infarction., PLoS One, PMID 23799145
PXD051003 Dataset with its publication pending (from iProX)Dataset title: Proteomic analysis of giant panda testicular tissuePossible reference: Peng, J. et al. (2024) Proteomic analysis of giant panda testicular tissue of different age groups., PeerJ, PMID 39677950
PXD050983 Dataset with its publication pending (from PRIDE)Dataset title: Fam134c and Fam134b shape axonal endoplasmic reticulum architecture in vivo.Possible reference: Iavarone, F. et al. (2024) Fam134c and Fam134b shape axonal endoplasmic reticulum architecture in vivo., EMBO Rep, PMID 39039299
PXD050980 Dataset with its publication pending (from PRIDE)Dataset title: Resting skeletal muscle reduces ATP turnover during hibernationPossible reference: De Napoli, C. et al. (2025) Reduced ATP turnover during hibernation in relaxed skeletal muscle., Nat Commun, PMID 39747078
PXD050943 Dataset with its publication pending (from jPOST)Dataset title: Proteomic Integrity of Tape-Stripped Stratum Corneum Samples Endures Higher Temperatures Possible reference: Azimi, A. et al. (2025) Proteomic integrity of tape-stripped stratum corneum samples endures higher temperatures., J Proteomics, PMID 39369955
PXD050937 Dataset with its publication pending (from PRIDE)Dataset title: Fission yeast Caprin protein is required for efficient heterochromatin establishment.Possible reference: Zhang, H. et al. (2025) Fission yeast Caprin protein is required for efficient heterochromatin establishment., PLoS Genet, PMID 40063661
PXD050927 no publication (from MassIVE)Dataset title: Salinity-induced photorespiration in poplar vascular tissues facilitates nitrogen reallocationPossible reference: Wilhelmi, MDMR. et al. (2025) Salinity-Induced Photorespiration in Populus Vascular Tissues Facilitate Nitrogen Reallocation., Plant Cell Environ, PMID 39351842
PXD050923 Dataset with its publication pending (from jPOST)Dataset title: Phosphoproteomics analysis of serum from dogs affected with pulmonary hypertension secondary to degenerative mitral valve diseasePossible reference: Sakarin, S. et al. (2024) Phosphoproteomics analysis of serum from dogs affected with pulmonary hypertension secondary to degenerative mitral valve disease., PeerJ, PMID 38708342
PXD050922 no publication (from MassIVE)Dataset title: An accessible workflow for high sensitivity proteomics using Parallel Accumulation - Serial Fragmentation (PASEF)Possible reference: Skowronek, P. et al. (2025) An accessible workflow for high-sensitivity proteomics using parallel accumulation-serial fragmentation (PASEF)., Nat Protoc, PMID 39825144
PXD050880 Dataset with its publication pending (from iProX)Dataset title: High antimony resistance strain Enterobacter sp. Z1 mediates biomineralization of antimony trioxidePossible reference: Zhou, Z. et al. (2025) High antimony resistance strain Enterobacter sp. Z1 mediates biomineralization of antimony trioxide., Environ Int, PMID 39721567
PXD050877 Dataset with its publication pending (from PRIDE)Dataset title: Targeted proteomic approach for quantification of Collagen type I and type III in formalin-fixed paraffin-embedded tissuePossible reference: Rosin, NL. et al. (2024) Targeted proteomic approach for quantification of collagen type I and type III in formalin-fixed paraffin-embedded tissue., Sci Rep, PMID 39090134
PXD050870 no publication (from MassIVE)Dataset title: Single-cell m6A profiling in the mouse brain uncovers cell type-specific RNA methylomes and age-dependent differential methylationPossible reference: Tegowski, M. et al. (2024) Single-cell m6A profiling in the mouse brain uncovers cell type-specific RNA methylomes and age-dependent differential methylation., Nat Neurosci, PMID 39317796
PXD050860 Dataset with its publication pending (from jPOST)Dataset title: Comparative Proteomic Analysis of Dental Pulp from Supernumerary and Normal Permanent TeethPossible reference: Lertruangpanya, K. et al. (2024) Comparative proteomic analysis of dental pulp from supernumerary and normal permanent teeth., Clin Oral Investig, PMID 38758416
PXD050857 Dataset with its publication pending (from PRIDE)Dataset title: The use of omics technologies in creating LBP and postbiotics based on the Limosilactobacillus fermentum U-21Possible reference: Odorskaya, MV. et al. (2024) The use of omics technologies in creating LBP and postbiotics based on the Limosilactobacillus fermentum U-21., Front Microbiol, PMID 38919499
PXD050850 Dataset with its publication pending (from iProX)Dataset title: The Role of DNA Origami in Treating Diabetic SepsisPossible reference: Luo, X. et al. (2024) Role of Deoxyribonucleic Acid Origami for Alleviating Kidney and Liver Injury in Diabetic Sepsis., J Proteome Res, PMID 39264033
PXD050844 Dataset with its publication pending (from PRIDE)Dataset title: PARP4 interacts with hnRNPM to regulate splicing during lung cancer progressionPossible reference: Lee, YF. et al. (2024) PARP4 interacts with hnRNPM to regulate splicing during lung cancer progression., Genome Med, PMID 39034402
PXD050843 Dataset with its publication pending (from iProX)Dataset title: Long-lived proteins and DNA as candidate predictive biomarkers for tissue associated diseasesPossible reference: Liu, X. et al. (2024) Long-lived proteins and DNA as candidate predictive biomarkers for tissue associated diseases., iScience, PMID 38632996
PXD050806 Dataset with its publication pending (from PRIDE)Dataset title: Pathogenic Proteotoxicity of Cryptic Splicing is Alleviated by Ubiquitination and ER-PhagyPossible reference: Prieto-Garcia, C. et al. (2024) Pathogenic proteotoxicity of cryptic splicing is alleviated by ubiquitination and ER-phagy., Science, PMID 39541449
PXD050801 Dataset with its publication pending (from PRIDE)Dataset title: Chemoproteomics reveals immunogenic and tumor-associated cell surface substrates of ectokinase CK2αPossible reference: Delaveris, CS. et al. (2024) Chemoproteomics reveals immunogenic and tumor-associated cell surface substrates of ectokinase CK2α., bioRxiv, PMID 38562834
PXD050798 Dataset with its publication pending (from PRIDE)Dataset title: Combining multiomics to analyze the molecular mechanism of hair follicle cycle change in cashmere goats from Inner Mongolia.Possible reference: Zhang, C. et al. (2024) Combining multiomics to analyze the molecular mechanism of hair follicle cycle change in cashmere goats from Inner Mongolia., Front Vet Sci, PMID 39036798
PXD050791 Dataset with its publication pending (from iProX)Dataset title: Substrate and Functional Characterization of the Lysine Acetyltransferase and Deacetylase in MycobacteriaPossible reference: Vergnolle, O. et al. (2013) Mechanism and regulation of mycobactin fatty acyl-AMP ligase FadD33., J Biol Chem, PMID 23935107
PXD050758 Dataset with its publication pending (from PRIDE)Dataset title: Pregnancy alters fatty acid metabolism, glucose regulation, and detoxification of the liver in synchrony with biomechanical property changesPossible reference: Guo, J. et al. (2024) Pregnancy alters fatty acid metabolism, glucose regulation, and detoxification of the liver in synchrony with biomechanical property changes., Heliyon, PMID 39506943
PXD050757 Dataset with its publication pending (from iProX)Dataset title: Pcf11/Spt5 condensates stall RNA polymerase II to facilitate termination and piRNA-guided heterochromatin formationPossible reference: Liu, W. et al. (2025) Pcf11/Spt5 condensates stall RNA polymerase II to facilitate termination and piRNA-guided heterochromatin formation., Mol Cell, PMID 40015272
PXD050755 Dataset with its publication pending (from PRIDE)Dataset title: Secretome analysis of HSPD1 knockdown in A549 lung cancer cellsPossible reference: Aluksanasuwan, S. et al. (2024) Knockdown of heat shock protein family D member 1 (HSPD1) in lung cancer cell altered secretome profile and cancer-associated fibroblast induction., Biochim Biophys Acta Mol Cell Res, PMID 38663552
PXD050749 no publication (from MassIVE)Dataset title: Deep, Unbiased and Quantitative mass spectrometry-based plasma proteome analysis of personalized response to mRNA COVID-19 vaccinePossible reference: Huang, T. et al. (2025) Deep, Unbiased, and Quantitative Mass Spectrometry-Based Plasma Proteome Analysis of Individual Responses to mRNA COVID-19 Vaccine., J Proteome Res, PMID 39904632
PXD050747 Dataset with its publication pending (from PRIDE)Dataset title: Xenogeneic-free culture of human intestinal stem cells on functional polymer-coated substrates for scalable, clinical-grade stem cell therapyPossible reference: Park, S. et al. (2024) Xenogeneic-free culture of human intestinal stem cells on functional polymer-coated substrates for scalable, clinical-grade stem cell therapy., Nat Commun, PMID 39622824
PXD050734 Dataset with its publication pending (from PRIDE)Dataset title: Crosslinking of Ly6a metabolically reprogram CD8 T cells for cancer immunotherapy.Possible reference: Maliah, A. et al. (2024) Crosslinking of Ly6a metabolically reprograms CD8 T cells for cancer immunotherapy., Nat Commun, PMID 39333093
PXD050733 no publication (from MassIVE)Dataset title: SDS22 coordinates the assembly of holoenzymes from nascent protein phosphatase-1Possible reference: Cao, X. et al. (2024) SDS22 coordinates the assembly of holoenzymes from nascent protein phosphatase-1., Nat Commun, PMID 38918402
PXD050720 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic Analysis of Urinary Extracellular Vesicles from Patients with ADTKD-HNF1β identifies roles for cilia-related proteins and SerpinsPossible reference: Kahlman, EJEM. et al. (2025) Proteomic analysis of urinary extracellular vesicles from patients with ADTKD-HNF1β identifies roles for cilia-related proteins and serpins., Am J Physiol Renal Physiol, PMID 40013955
PXD050719 Dataset with its publication pending (from jPOST)Dataset title: Actin-nucleation promoting factor N-WASP influences alpha-synuclein condensates and pathologyPossible reference: Jackson, J. et al. (2024) Actin-nucleation promoting factor N-WASP influences alpha-synuclein condensates and pathology., Cell Death Dis, PMID 38693139
PXD050708 Dataset with its publication pending (from jPOST)Dataset title: Data Independent Acquisition Mass Spectrometry Enhanced Personalized Glycosylation Profiling of Haptoglobin in Hepatocellular Carcinoma Possible reference: Pradita, T. et al. (2024) Data Independent Acquisition Mass Spectrometry Enhanced Personalized Glycosylation Profiling of Haptoglobin in Hepatocellular Carcinoma., J Proteome Res, PMID 38994555
PXD050707 no publication (from MassIVE)Dataset title: Gemcitabine and ATR inhibitors synergize to kill PDAC cells by blocking DNA damage responsePossible reference: Höfer, S. et al. (2025) Gemcitabine and ATR inhibitors synergize to kill PDAC cells by blocking DNA damage response., Mol Syst Biol, PMID 39838187
PXD050685 Dataset with its publication pending (from PRIDE)Dataset title: Redirecting the pioneering function of FOXA1 with covalent small moleculesPossible reference: Won, SJ. et al. (2024) Redirecting the pioneering function of FOXA1 with covalent small molecules., bioRxiv, PMID 38562719
PXD050684 Dataset with its publication pending (from PRIDE)Dataset title: The Interferon-inducible NAMPT acts as a protein phosphoribosylase to restrict viral infectionPossible reference: Zhang, S. et al. (2023) The Interferon-inducible NAMPT acts as a protein phosphoribosylase to restrict viral infection., bioRxiv, PMID 37905103
PXD050653 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic analysis of mouse liver lesions at all three stages of Echinococcus granulosus infectionPossible reference: Jiang, N. et al. (2024) Proteomic analysis of mouse liver lesions at all three stages of Echinococcus granulosus infection., PLoS Negl Trop Dis, PMID 39625960
PXD050636 Dataset with its publication pending (from iProX)Dataset title: Palmitoylation licenses RIPK1 cytotoxicity in the TNF pathwayPossible reference: Zhang, N. et al. (2024) Palmitoylation licenses RIPK1 kinase activity and cytotoxicity in the TNF pathway., Mol Cell, PMID 39471814
PXD050616 no publication (from MassIVE)Dataset title: Interplay between beta-propeller subunits WDR26 and muskelin regulates the CTLH E3 ligase supramolecular complexPossible reference: Maitland, MER. et al. (2024) Interplay between β-propeller subunits WDR26 and muskelin regulates the CTLH E3 ligase supramolecular complex., Commun Biol, PMID 39702571
PXD050607 Dataset with its publication pending (from iProX)Dataset title: Establishment of a new isolation method for urinary exosomesPossible reference: Jiang, ZZ. et al. (2016) Exosomes secreted by human urine-derived stem cells could prevent kidney complications from type I diabetes in rats., Stem Cell Res Ther, PMID 26852014
PXD050597 Dataset with its publication pending (from PRIDE)Dataset title: Dental calculus formation rate: the role of salivary proteome and metaproteomePossible reference: Cai, W. et al. (2025) Dental Calculus Formation Rate: The Role of Salivary Proteome and Metaproteome., J Clin Periodontol, PMID 39953744
PXD050593 Dataset with its publication pending (from jPOST)Dataset title: Changes in Protein Fluxes in Skeletal Muscle During Sequential Stages of Muscle Regeneration After Acute Injury in Male MicePossible reference: Bizieff, A. et al. (2024) Changes in protein fluxes in skeletal muscle during sequential stages of muscle regeneration after acute injury in male mice., Sci Rep, PMID 38849371
PXD050561 no publication (from MassIVE)Dataset title: A multiscale functional map of somatic mutations in cancer integrating protein structure and network topologyPossible reference: Zhang, Y. et al. (2024) A multiscale functional map of somatic mutations in cancer integrating protein structure and network topology., bioRxiv, PMID 36945530
PXD050551 Dataset with its publication pending (from iProX)Dataset title: Phosphoproteomics of postharvest blueberries softeningPossible reference: Sun, L. et al. (2024) Phosphoproteomic Analysis Indicates Phosphorylated Proteins in Response to Postharvest Blueberries Fruit Softening during Shelf Life., J Agric Food Chem, PMID 39257137
PXD050541 Dataset with its publication pending (from iProX)Dataset title: Proteomic analysis of melanotic schwannomaPossible reference: Röhrich, M. et al. (2016) Methylation-based classification of benign and malignant peripheral nerve sheath tumors., Acta Neuropathol, PMID 26857854
PXD050510 Dataset with its publication pending (from iProX)Dataset title: In situ chemoproteomic profiling reveals itaconate inhibits de novo purine biosynthesis in pathogensPossible reference: Liu, Z. et al. (2024) In situ chemoproteomic profiling reveals itaconate inhibits de novo purine biosynthesis in pathogens., Cell Rep, PMID 39277862
PXD050500 Dataset with its publication pending (from PRIDE)Dataset title: A complete telomere-to-telomere genome of bread wheat presents insights into the evolution, transcriptome, and proteome of a hexaploid genomePossible reference: Liu, S. et al. (2025) A telomere-to-telomere genome assembly coupled with multi-omic data provides insights into the evolution of hexaploid bread wheat., Nat Genet, PMID 40195562
PXD050493 Dataset with its publication pending (from PRIDE)Dataset title: A High-Performance Workflow for Identifying Site-Specific Crosslinks Originating from a Genetically Incorporated, Photoreactive Amino AcidPossible reference: Ulmer, LD. et al. (2024) High-Performance Workflow for Identifying Site-Specific Crosslinks Originating from a Genetically Incorporated, Photoreactive Amino Acid., J Proteome Res, PMID 38968604
PXD050492 Dataset with its publication pending (from jPOST)Dataset title: Changes in Protein Fluxes in Skeletal Muscle During Sequential Stages of Muscle Regeneration After Acute Injury in Male MicePossible reference: Bizieff, A. et al. (2024) Changes in protein fluxes in skeletal muscle during sequential stages of muscle regeneration after acute injury in male mice., Sci Rep, PMID 38849371
PXD050472 Dataset with its publication pending (from jPOST)Dataset title: Sperm proteins in the coral Acropora digitiferaPossible reference: Morita, M. et al. (2024) Conservation of Protein Kinase A Substrates in the Cnidarian Coral Spermatozoa Among Animals and Their Molecular Evolution., J Mol Evol, PMID 38662235
PXD050467 Dataset with its publication pending (from iProX)Dataset title: Multiomics dataYA2022053 4D-Label-freePossible reference: Xu, WF. et al. (2022) A novel strategy of gene screen based on multi-omics in Streptomyces roseosporus., Appl Microbiol Biotechnol, PMID 35389068
PXD050454 no publication (from MassIVE)Dataset title: Deep Plasma Proteome Profiling by Modulating Single Nanoparticle Protein Corona with Small MoleculesPossible reference: Ashkarran, AA. et al. (2024) Deep Plasma Proteome Profiling by Modulating Single Nanoparticle Protein Corona with Small Molecules., bioRxiv, PMID 38496642
PXD050430 Dataset with its publication pending (from iProX)Dataset title: Proteomic Analysis of Moorella thermoacetica-g-C3N4 Nanocomposite system for Artificial PhotosynthesisPossible reference: Shen, J. et al. (2024) Proteomic and metabolic analysis of Moorella thermoacetica-g-C3N4 nanocomposite system for artificial photosynthesis., Talanta, PMID 38941811
PXD050423 Dataset with its publication pending (from PRIDE)Dataset title: Prey killing without invasion by Bdellovibrio bacteriovorus defective for a MIDAS-family adhesinPossible reference: Tyson, J. et al. (2024) Prey killing without invasion by Bdellovibrio bacteriovorus defective for a MIDAS-family adhesin., Nat Commun, PMID 38594280
PXD050418 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic Insights into Psychrophile Growth in Perchlorate-Amended Subzero Conditions: Implications for Martian Life DetectionPossible reference: Gentilhomme, AS. et al. (2025) Proteomic Insights into Psychrophile Growth in Perchlorate-Amended Subzero Conditions: Implications for Martian Life Detection., Astrobiology, PMID 39960803
PXD050403 no publication (from MassIVE)Dataset title: Immuno-Oncologic Profiling by Stage-Dependent Transcriptome and Proteome Analyses of Spontaneously Regressing Canine Cutaneous HistiocytomaPossible reference: Loriani Fard, AK. et al. (2024) Immuno-oncologic profiling by stage-dependent transcriptome and proteome analyses of spontaneously regressing canine cutaneous histiocytoma., PeerJ, PMID 39619201
PXD050401 Dataset with its publication pending (from PRIDE)Dataset title: GFI1B and LSD1 repress myeloid traits during megakaryocyte differentiationPossible reference: Venhuizen, J. et al. (2024) GFI1B and LSD1 repress myeloid traits during megakaryocyte differentiation., Commun Biol, PMID 38548886
PXD050388 Dataset with its publication pending (from iProX)Dataset title: Immunoregulatory role of the gut microbiota in inflammatory depressionPossible reference: Rook, GA. et al. (2014) Microbiota, immunoregulatory old friends and psychiatric disorders., Adv Exp Med Biol, PMID 24997041
PXD050360 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic analysis of vascular tissue from critical limb ischemia mouse models treated with EtrinabdionePossible reference: GarcÃa-MartÃn, A. et al. (2024) Etrinabdione (VCE-004.8), a B55α activator, promotes angiogenesis and arteriogenesis in critical limb ischemia., J Transl Med, PMID 39506809
PXD050356 Dataset with its publication pending (from PRIDE)Dataset title: NRVM Conditioned Media ProteomicsPossible reference: Blackwood, EA. et al. (2020) Proteomic analysis of the cardiac myocyte secretome reveals extracellular protective functions for the ER stress response., J Mol Cell Cardiol, PMID 32339566
PXD050348 Dataset with its publication pending (from PRIDE)Dataset title: Venom evolution of 15 neotropical antsPossible reference: Menk, JJ. et al. (2023) Antimicrobial Peptide Arsenal Predicted from the Venom Gland Transcriptome of the Tropical Trap-Jaw Ant Odontomachus chelifer., Toxins (Basel), PMID 37235379
PXD050341 no publication (from MassIVE)Dataset title: Analysis of Protein Cysteine Acylation Using a Modified Suspension Trap (Acyl-Trap)Possible reference: Forrester, MT. et al. (2024) Analysis of Protein Cysteine Acylation Using a Modified Suspension Trap (Acyl-Trap)., bioRxiv, PMID 38585928
PXD050315 Dataset with its publication pending (from PRIDE)Dataset title: System-level characterization of engineered and evolved formatotrophic E. coli strainsPossible reference: Yilmaz, S. et al. (2025) System-level characterization of engineered and evolved formatotrophic E. coli strains., Synth Syst Biotechnol, PMID 40166614
PXD050309 Dataset with its publication pending (from iProX)Dataset title: Serum biomarkers in patients with drug-resistant epilepsy: a proteomics-based analysisPossible reference: Ma, M. et al. (2024) Serum biomarkers in patients with drug-resistant epilepsy: a proteomics-based analysis., Front Neurol, PMID 38585359
PXD050293 Dataset with its publication pending (from iProX)Dataset title: Proteomics of High dose of TCM in osteoporosis ratPossible reference: Chu, S. et al. (2021) Effects and Mechanism of Zishen Jiangtang Pill on Diabetic Osteoporosis Rats Based on Proteomic Analysis., Evid Based Complement Alternat Med, PMID 34608397
PXD050279 Dataset with its publication pending (from PRIDE)Dataset title: BAG3 regulates cilia homeostasis of glioblastoma via its WW domainPossible reference: Roth, C. et al. (2024) BAG3 regulates cilia homeostasis of glioblastoma via its WW domain., Biofactors, PMID 38655699
PXD050263 no publication (from MassIVE)Dataset title: Deficiency in the SNARE protein SYNTAXIN-11 causes a secondary B cell defectPossible reference: Kögl, T. et al. (2024) Patients and mice with deficiency in the SNARE protein SYNTAXIN-11 have a secondary B cell defect., J Exp Med, PMID 38722309
PXD050249 Dataset with its publication pending (from PRIDE)Dataset title: Transcription factors induce differential splicing of duplicated ribosomal protein genes during meiosisPossible reference: Petibon, C. et al. (2025) Transcription factors induce differential splicing of duplicated ribosomal protein genes during meiosis., Nucleic Acids Res, PMID 39817510
PXD050232 Dataset with its publication pending (from iProX)Dataset title: The ferruginous hemeprotein HhuH facilitates the detoxification of cadmium and chromium in Stenotrophomonas sp. SY1Possible reference: Zhou, Z. et al. (2025) Ferruginous hemeprotein HhuH facilitates the cadmium adsorption and chromium reduction in Stenotrophomonas sp. SY1., Appl Environ Microbiol, PMID 39629984
PXD050197 no publication (from MassIVE)Dataset title: Oligonucleotide-mediated proximity-interactome mapping (O-MAP): A unified method for discovering RNA-interacting proteins, transcripts and genomic loci in situ.Possible reference: Tsue, AF. et al. (2023) Oligonucleotide-directed proximity-interactome mapping (O-MAP): A unified method for discovering RNA-interacting proteins, transcripts and genomic loci in situ., bioRxiv, PMID 36711823
PXD050196 no publication (from MassIVE)Dataset title: Directed Evolution of Genetically Encoded LYTACs for Cell-Mediated DeliveryPossible reference: Yang, JL. et al. (2023) Directed Evolution of Genetically Encoded LYTACs for Cell-Mediated Delivery., bioRxiv, PMID 38014030
PXD050186 no publication (from MassIVE)Dataset title: Retinal cells derived from patients with DRAM2-dependent CORD21 dystrophy exhibit key lysosomal enzyme deficiency and lysosomal content accumulationPossible reference: Tsikandelova, R. et al. (2024) Retinal cells derived from patients with DRAM2-dependent CORD21 dystrophy exhibit key lysosomal enzyme deficiency and lysosomal content accumulation., Stem Cell Reports, PMID 38964324
PXD050174 no publication (from MassIVE)Dataset title: mRNA-LNP HIV-1 trimer boosters elicit precursors to bnAbsPossible reference: Xie, Z. et al. (2024) mRNA-LNP HIV-1 trimer boosters elicit precursors to broad neutralizing antibodies., Science, PMID 38753770
PXD050163 no publication (from MassIVE)Dataset title: Vaccine priming of rare HIV broadly neutralizing antibody precursors in nonhuman primatesPossible reference: Steichen, JM. et al. (2024) Vaccine priming of rare HIV broadly neutralizing antibody precursors in nonhuman primates., Science, PMID 38753769
PXD050156 Dataset with its publication pending (from PRIDE)Dataset title: Highly potent quinoxalinediones inhibit α−hemolysin and ameliorate lung infections by Staphylococcus aureusPossible reference: Shekhar, A. et al. (2025) Highly potent quinoxalinediones inhibit α-hemolysin and ameliorate Staphylococcus aureus lung infections., Cell Host Microbe, PMID 40168998
PXD050154 Dataset with its publication pending (from PRIDE)Dataset title: Impact of Surfactants on Cumulative Trypsin Activity for Bottom-up Proteome AnalysisPossible reference: Nickerson, JL. et al. (2024) Impact of Surfactants on Cumulative Trypsin Activity in Bottom-Up Proteome Analysis., J Proteome Res, PMID 38973097
PXD050153 Dataset with its publication pending (from PRIDE)Dataset title: Analysis of secretion of transmembrane effectors by the type IV b secretion system of Legionella pneumophilaPossible reference: Malmsheimer, S. et al. (2024) The T4bSS of Legionella features a two-step secretion pathway with an inner membrane intermediate for secretion of transmembrane effectors., bioRxiv, PMID 38559167
PXD050150 no publication (from MassIVE)Dataset title: Tight regulation of a nuclear HAPSTR1-HUWE1 pathway essential for mammalian lifePossible reference: Amici, DR. et al. (2024) Tight regulation of a nuclear HAPSTR1-HUWE1 pathway essential for mammalian life., Life Sci Alliance, PMID 38453366
PXD050139 Dataset with its publication pending (from PRIDE)Dataset title: Implications of O-glycan modifications in the hinge region of a plant-produced SARS-CoV-2-IgA antibody on functionalityPossible reference: Uetz, P. et al. (2024) Implications of O-glycan modifications in the hinge region of a plant-produced SARS-CoV-2-IgA antibody on functionality., Front Bioeng Biotechnol, PMID 38511130
PXD050137 Dataset with its publication pending (from PRIDE)Dataset title: Microbial consortia driving lignocellulose transformation in agricultural woodchip bioreactorsPossible reference: Schiml, VC. et al. (2024) Microbial consortia driving (ligno)cellulose transformation in agricultural woodchip bioreactors., Appl Environ Microbiol, PMID 39526802
PXD050109 no publication (from MassIVE)Dataset title: Active site remodeling of IDH1 by tumor_relevant mutations and potential resistance mechanismsPossible reference: Mealka, M. et al. (2024) Active site remodeling in tumor-relevant IDH1 mutants drives distinct kinetic features and potential resistance mechanisms., bioRxiv, PMID 38260668
PXD050102 Dataset with its publication pending (from PRIDE)Dataset title: Dyrk1a P21 phosphoprotoemic dataPossible reference: Lee, JC. et al. (2013) Trisomy of the Dscr1 gene suppresses early progression of pancreatic intraepithelial neoplasia driven by oncogenic Kras., Biochem Biophys Res Commun, PMID 24041692
PXD050099 Dataset with its publication pending (from jPOST)Dataset title: The trajectory of vesicular proteomic signatures from HBV-HCC by chitosan-magnetic bead-based separation and DIA-proteomic analysisPossible reference: Cao, L. et al. (2024) The trajectory of vesicular proteomic signatures from HBV-HCC by chitosan-magnetic bead-based separation and DIA-proteomic analysis., J Extracell Vesicles, PMID 39207047
PXD050098 Dataset with its publication pending (from jPOST)Dataset title: Hydrophilic interaction chromatography coupled to ultraviolet photodissociation affords identification, localization, and relative quantitation of glycans on intact glycoproteinsPossible reference: James, VK. et al. (2024) Hydrophilic Interaction Chromatography Coupled to Ultraviolet Photodissociation Affords Identification, Localization, and Relative Quantitation of Glycans on Intact Glycoproteins., J Proteome Res, PMID 39312773
PXD050087 Dataset with its publication pending (from PRIDE)Dataset title: Purification of time-resolved insulin granules reveals proteomic and lipidomic changes during granule agingPossible reference: Neukam, M. et al. (2024) Purification of time-resolved insulin granules reveals proteomic and lipidomic changes during granule aging., Cell Rep, PMID 38421874
PXD050038 no publication (from MassIVE)Dataset title: A Protein Phosphatase 1 specific phosphatase targeting peptide (PhosTAP) to identify the PP1 phosphatomePossible reference: Choy, MS. et al. (2024) A protein phosphatase 1 specific phosphatase targeting peptide (PhosTAP) to identify the PP1 phosphatome., Proc Natl Acad Sci U S A, PMID 39446389
PXD050024 Dataset with its publication pending (from PRIDE)Dataset title: Do extracellular vesicles have specific target cells? Extracellular Vesicle mediated embryo maternal communicationPossible reference: Delorme-Axford, E. et al. (2013) Human placental trophoblasts confer viral resistance to recipient cells., Proc Natl Acad Sci U S A, PMID 23818581
PXD049996 Dataset with its publication pending (from PRIDE)Dataset title: Proinsulin degradation and presentation of a proinsulin B-chain autoantigen involves ER-associated protein degradation (ERAD)-enzyme UBE2G2Possible reference: Cremer, T. et al. (2024) Proinsulin degradation and presentation of a proinsulin B-chain autoantigen involves ER-associated protein degradation (ERAD)-enzyme UBE2G2., PLoS One, PMID 38787820
PXD049995 Dataset with its publication pending (from PRIDE)Dataset title: TblncRNA-23, a long non-coding RNA transcribed by RNA polymerase I, regulates developmental changes in Trypanosoma bruceiPossible reference: Galili-Kostin, B. et al. (2025) TblncRNA-23, a long non-coding RNA transcribed by RNA polymerase I, regulates developmental changes in Trypanosoma brucei., Nat Commun, PMID 40251171
PXD049992 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic characteristics in degenerated and regenerative mouse retinaPossible reference: Wang, X. et al. (2024) Comparative proteomic analysis of regenerative mechanisms in mouse retina to identify markers for neuro-regeneration in glaucoma., Sci Rep, PMID 39366989
PXD049989 Dataset with its publication pending (from PRIDE)Dataset title: Regulation of Far11 phosphorylation by Ppg1 phosphatasePossible reference: Furukawa, K. et al. (2018) The PP2A-like Protein Phosphatase Ppg1 and the Far Complex Cooperatively Counteract CK2-Mediated Phosphorylation of Atg32 to Inhibit Mitophagy., Cell Rep, PMID 29925000
PXD049969 Dataset with its publication pending (from PRIDE)Dataset title: Influence of Different Sample Preparation Approaches on Proteoform Identification by Top-Down ProteomicsPossible reference: Kaulich, PT. et al. (2024) Influence of different sample preparation approaches on proteoform identification by top-down proteomics., Nat Methods, PMID 39438734
PXD049968 no publication (from MassIVE)Dataset title: Thylakoid Protein FPB1 Synergistically Cooperates with PAM68 to Promote CP47 Biogenesis and Photosystem II AssemblyPossible reference: Zhang, L. et al. (2024) Thylakoid protein FPB1 synergistically cooperates with PAM68 to promote CP47 biogenesis and Photosystem II assembly., Nat Commun, PMID 38600073
PXD049966 Dataset with its publication pending (from PRIDE)Dataset title: Threonine fuels glioblastoma through YRDC-mediated codon-biased translational reprogrammingPossible reference: Wu, X. et al. (2024) Threonine fuels glioblastoma through YRDC-mediated codon-biased translational reprogramming., Nat Cancer, PMID 38519786
PXD049965 no publication (from MassIVE)Dataset title: Differences in Protein Capture by SP3 and SP4 Demonstrate Mechanistic Insights of Proteomics Clean-up Techniques.Possible reference: Conforti, JM. et al. (2024) Differences in Protein Capture by SP3 and SP4 Demonstrate Mechanistic Insights of Proteomics Clean-up Techniques., bioRxiv, PMID 38559195
PXD049721 no publication (from MassIVE)Dataset title: Honey bee arginine kinase is involved in Deformed Wing Virus infectionPossible reference: Becchimanzi, A. et al. (2025) Deformed wing virus coopts the host arginine kinase to enhance its fitness in honey bees (Apis mellifera)., BMC Biol, PMID 39800727
PXD049720 Dataset with its publication pending (from jPOST)Dataset title: Glutathione S-transferase omega class 1 (GSTO1)-associated large extracellular vesicles involves in tumor-associated macrophage-mediated cisplatin resistance in bladder cancerPossible reference: Pan, YC. et al. (2024) Glutathione S-transferase omega class 1 (GSTO1)-associated large extracellular vesicles are involved in tumor-associated macrophage-mediated cisplatin resistance in bladder cancer., Mol Oncol, PMID 38750006
PXD049719 Dataset with its publication pending (from jPOST)Dataset title: Glutathione S-transferase omega class 1 (GSTO1)-associated large extracellular vesicles involves in tumor-associated macrophage-mediated cisplatin resistance in bladder cancerPossible reference: Pan, YC. et al. (2024) Glutathione S-transferase omega class 1 (GSTO1)-associated large extracellular vesicles are involved in tumor-associated macrophage-mediated cisplatin resistance in bladder cancer., Mol Oncol, PMID 38750006
PXD049712 Dataset with its publication pending (from iProX)Dataset title: The combined effect of sodium alginate (SA) and bovine serum albumin (BSA) improved the cryopreservation quality of boar sperm through the PI3K-AKT pathwayPossible reference: Wang, J. et al. (2025) Sodium alginate and bovine serum albumin co-combined improved the cryopreservation quality of boar sperm through the PI3K-AKT pathway., Reprod Fertil Dev, PMID 39998932
PXD049709 Dataset with its publication pending (from jPOST)Dataset title: Proteome analysis of mouse oocyte pronucleiPossible reference: Ogushi, S. et al. (2017) Reconstitution of the oocyte nucleolus in mice through a single nucleolar protein, NPM2., J Cell Sci, PMID 28600324
PXD049704 Dataset with its publication pending (from iProX)Dataset title: Proteostatic reactivation of the developmental transcription factor TBX3 drives BRAF/MAPK-mediated tumorigenesisPossible reference: Zhang, Z. et al. (2024) Proteostatic reactivation of the developmental transcription factor TBX3 drives BRAF/MAPK-mediated tumorigenesis., Nat Commun, PMID 38750011
PXD049700 Dataset with its publication pending (from PRIDE)Dataset title: Phase separation of CTD of RNAPIIPossible reference: Narita, T. et al. (2017) Cyclin-dependent kinase 9 is a novel specific molecular target in adult T-cell leukemia/lymphoma., Blood, PMID 28646117
PXD049480 Dataset with its publication pending (from PRIDE)Dataset title: ZNF143 is a transcriptional regulator of nuclear-encoded mitochondrial genes that acts independently of looping and CTCFPossible reference: Magnitov, MD. et al. (2025) ZNF143 is a transcriptional regulator of nuclear-encoded mitochondrial genes that acts independently of looping and CTCF., Mol Cell, PMID 39708805
PXD049479 Dataset with its publication pending (from PRIDE)Dataset title: Vibrio coralliilyticus T6SS comparative proteomicsPossible reference: Mass, S. et al. (2024) The coral pathogen Vibrio coralliilyticus uses a T6SS to secrete a group of novel anti-eukaryotic effectors that contribute to virulence., PLoS Biol, PMID 39226241
PXD049478 Dataset with its publication pending (from PRIDE)Dataset title: Protein aggregation is a consequence of the dormancy-inducing membrane toxin TisB in Escherichia coliPossible reference: Leinberger, FH. et al. (2024) Protein aggregation is a consequence of the dormancy-inducing membrane toxin TisB in Escherichia coli., mSystems, PMID 39377584
PXD049473 Dataset with its publication pending (from PRIDE)Dataset title: An outer membrane porin-lipoprotein complex modulates elongasome movement to establish cell curvature in Rhodospirillum rubrumPossible reference: Pöhl, S. et al. (2024) An outer membrane porin-lipoprotein complex modulates elongasome movement to establish cell curvature in Rhodospirillum rubrum., Nat Commun, PMID 39223154
PXD049468 Dataset with its publication pending (from iProX)Dataset title: An antifouling membrane-fusogenic liposome for effective intracellular delivery in vivoPossible reference: Kong, H. et al. (2024) An antifouling membrane-fusogenic liposome for effective intracellular delivery in vivo., Nat Commun, PMID 38769317
PXD049459 Dataset with its publication pending (from iProX)Dataset title: Proteomic sequencing of ADAM17 deficiency mousePossible reference: Sommer, A. et al. (2016) Phosphatidylserine exposure is required for ADAM17 sheddase function., Nat Commun, PMID 27161080
PXD049450 Dataset with its publication pending (from jPOST)Dataset title: Establishment and characterization of fluorouracil and gemcitabine resistant cholangiocarcinoma cell linesPossible reference: Wattanawongdon, W. et al. (2015) Establishment and characterization of gemcitabine-resistant human cholangiocarcinoma cell lines with multidrug resistance and enhanced invasiveness., Int J Oncol, PMID 25998688
PXD049423 Dataset with its publication pending (from jPOST)Dataset title: Mechanism of αKtx12 peptide on hippocampusPossible reference: Beraldo-Neto, E. et al. (2024) Unraveling neuroprotection with Kv1.3 potassium channel blockade by a scorpion venom peptide., Sci Rep, PMID 39537765
PXD049409 Dataset with its publication pending (from PRIDE)Dataset title: O-GlcNAcylation of RUNX1 promotes its stability and PDGF-BB-mediated resistance to CDK4/6 inhibitors in breast cancerPossible reference: Zhou, S. et al. (2025) Stabilization of RUNX1 Induced by O-GlcNAcylation Promotes PDGF-BB-Mediated Resistance to CDK4/6 Inhibitors in Breast Cancer., Cancer Res, PMID 39937190
PXD049391 Dataset with its publication pending (from PRIDE)Dataset title: Molecular mechanism of β-arrestin-2 pre-activation by phosphatidylinositol 4,5-bisphosphatePossible reference: Kim, K. et al. (2024) Molecular mechanism of β-arrestin-2 pre-activation by phosphatidylinositol 4,5-bisphosphate., EMBO Rep, PMID 39242774
PXD049383 Dataset with its publication pending (from PRIDE)Dataset title: Clinical implications and molecular features of extracellular matrix networks in soft tissue sarcomasPossible reference: Pankova, V. et al. (2024) Clinical Implications and Molecular Features of Extracellular Matrix Networks in Soft Tissue Sarcomas., Clin Cancer Res, PMID 38810090
PXD049373 Dataset with its publication pending (from PRIDE)Dataset title: Clinical implications and molecular features of extracellular matrix networks in soft tissue sarcomasPossible reference: Pankova, V. et al. (2024) Clinical Implications and Molecular Features of Extracellular Matrix Networks in Soft Tissue Sarcomas., Clin Cancer Res, PMID 38810090
PXD049369 Dataset with its publication pending (from PRIDE)Dataset title: Helical superstructures between amyloid and collagen VI in heart derived fibrils from a patient with Light Chain AmyloidosisPossible reference: Schulte, T. et al. (2024) Helical superstructures between amyloid and collagen in cardiac fibrils from a patient with AL amyloidosis., Nat Commun, PMID 39069558
PXD049353 no publication (from MassIVE)Dataset title: Senescence of endothelial cells promotes phenotypic changes in adventitial fibroblasts: possible implications for vascular agingPossible reference: Sarad, K. et al. (2025) Senescence of endothelial cells promotes phenotypic changes in adventitial fibroblasts: possible implications for vascular aging., Mol Cell Biochem, PMID 38743322
PXD049352 Dataset with its publication pending (from PRIDE)Dataset title: Photoreceptor-induced LHL4 protects photosystem II in Chlamydomonas reinhardtiiPossible reference: Dannay, M. et al. (2025) Photoreceptor-induced LHL4 protects the photosystem II monomer in Chlamydomonas reinhardtii., Proc Natl Acad Sci U S A, PMID 39946539
PXD049330 Dataset with its publication pending (from PRIDE)Dataset title: Alkylamine-tethered molecules recruit FBXO22 for targeted protein degradationPossible reference: Kagiou, C. et al. (2024) Alkylamine-tethered molecules recruit FBXO22 for targeted protein degradation., Nat Commun, PMID 38926334
PXD049317 no publication (from MassIVE)Dataset title: The co-chaperone DNAJA2 buffers proteasomal degradation of cytosolic proteins with missense mutationsPossible reference: Baker, HA. et al. (2025) The co-chaperone DNAJA2 buffers proteasomal degradation of cytosolic proteins with missense mutations., J Cell Sci, PMID 39618332
PXD049316 Dataset with its publication pending (from PRIDE)Dataset title: The RBPome of influenza A virus mRNA reveals a role for TDP-43 in viral replicationPossible reference: Dupont, M. et al. (2024) The RBPome of influenza A virus NP-mRNA reveals a role for TDP-43 in viral replication., Nucleic Acids Res, PMID 38686810
PXD049313 Dataset with its publication pending (from jPOST)Dataset title: Bioinformatics-Guided Identification and Quantification of Biomarkers of Crotalus atrox Envenomation and its Neutralization by AntivenomPossible reference: Bala, AA. et al. (2025) Bioinformatics-Guided Identification and Quantification of Biomarkers of Crotalus atrox Envenoming and its Neutralization by Antivenom., Mol Cell Proteomics, PMID 40147718
PXD049307 no publication (from MassIVE)Dataset title: Substrate recognition principles for PP2A-B55Possible reference: Kruse, T. et al. (2024) Substrate recognition principles for the PP2A-B55 protein phosphatase., bioRxiv, PMID 38370611
PXD049301 Dataset with its publication pending (from PRIDE)Dataset title: Helical superstructures between amyloid and collagen VI in heart derived fibrils from a patient with Light Chain AmyloidosisPossible reference: Schulte, T. et al. (2024) Helical superstructures between amyloid and collagen in cardiac fibrils from a patient with AL amyloidosis., Nat Commun, PMID 39069558
PXD049267 Dataset with its publication pending (from iProX)Dataset title: Lysine Acylations in Bacillus thuringiensisPossible reference: Liu, T. et al. (2024) Characterization of diverse lysine acylations in Bacillus thuringiensis: Substrate profiling and functional exploration., Proteomics, PMID 38491406
PXD049255 no publication (from MassIVE)Dataset title: Deep Proteome Turnover of Human iPSC-derived NeuronsPossible reference: Cavarischia-Rega, C. et al. (2024) Proteome Dynamics in iPSC-Derived Human Dopaminergic Neurons., Mol Cell Proteomics, PMID 39251023
PXD049235 Dataset with its publication pending (from PRIDE)Dataset title: PKM2 functions as a histidine kinase to phosphorylate PGAM1 to increase glycolysis shunts in cancerPossible reference: Wang, Y. et al. (2024) PKM2 functions as a histidine kinase to phosphorylate PGAM1 and increase glycolysis shunts in cancer., EMBO J, PMID 38750259
PXD049216 no publication (from MassIVE)Dataset title: LC-MS based Proteomics Analysis of aneuploid cellsPossible reference: Gemoll, T. et al. (2012) Protein profiling of genomic instability in endometrial cancer., Cell Mol Life Sci, PMID 21739232
PXD049214 no publication (from MassIVE)Dataset title: HDX-MS of murine urokinase plasminogen activator and variantsPossible reference: Kromann-Hansen, T. et al. (2018) Ligand binding modulates the structural dynamics and activity of urokinase-type plasminogen activator: A possible mechanism of plasminogen activation., PLoS One, PMID 29420634
PXD049210 Dataset with its publication pending (from PRIDE)Dataset title: Mass spectrometry analysis of the testicular interstitial fluid exosomePossible reference: Han, D. et al. (2023) Altered transcriptomic and metabolomic profiles of testicular interstitial fluid during aging in mice., Theriogenology, PMID 36773384
PXD049200 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic characterization and comparison of the infective and adult life stage secretomes from Necator Americanus and Ancylostoma ceylanicumPossible reference: Wong, Y. et al. (2025) Proteomic characterization and comparison of the infective and adult life stage secretomes from Necator americanus and Ancylostoma ceylanicum., PLoS Negl Trop Dis, PMID 39832284
PXD049166 Dataset with its publication pending (from iProX)Dataset title: An Integrated Multi-Omics Profiling Landscape of Organizing PneumoniaPossible reference: Tang, Y. et al. (2024) Integrated multi-omics profiling landscape of organising pneumonia., Clin Transl Med, PMID 39083563
PXD049163 Dataset with its publication pending (from iProX)Dataset title: Molecular Response During Ocean VoyagesPossible reference: Kim, Y. et al. (2016) Transporting Ocean Viromes: Invasion of the Aquatic Biosphere., PLoS One, PMID 27055282
PXD049141 Dataset with its publication pending (from iProX)Dataset title: [HPP-2.0] Dynamic phosphotyrosine-dependent signaling profiling in living cells by two-dimensional proximity proteomicsPossible reference: Kong, Q. et al. (2022) Dynamic Phosphotyrosine-Dependent Signaling Profiling in Living Cells by Two-Dimensional Proximity Proteomics., J Proteome Res, PMID 36280823
PXD049136 Dataset with its publication pending (from PRIDE)Dataset title: Widespread prevalence of a post-translational modification in activation of an essential bacterial DNA damage responsePossible reference: Kamat, A. et al. (2024) Widespread prevalence of a methylation-dependent switch to activate an essential DNA damage response in bacteria., PLoS Biol, PMID 38466718
PXD049121 no publication (from MassIVE)Dataset title: Delineating Bovine Milk Derived Microvesicles from Exosomes Using ProteomicsPossible reference: Couse, AD. et al. (2024) Delineating Bovine Milk Derived Microvesicles from Exosomes Using Proteomics., J Proteome Res, PMID 38805445
PXD049110 Dataset with its publication pending (from PRIDE)Dataset title: Sequential Glycosylations at the Multibasic Cleavage Site of SARS-CoV-2 Spike Protein Regulate Viral Activation, Assembly, and InfectionPossible reference: Wang, S. et al. (2024) Sequential glycosylations at the multibasic cleavage site of SARS-CoV-2 spike protein regulate viral activity., Nat Commun, PMID 38755139
PXD049085 Dataset with its publication pending (from PRIDE)Dataset title: Interplay between Two Paralogous Human Silencing Hub (HuSH) Complexes in Regulating LINE-1 Element SilencingPossible reference: Jensvold, ZD. et al. (2024) Interplay between Two Paralogous Human Silencing Hub (HuSH) Complexes in Regulating LINE-1 Element Silencing., bioRxiv, PMID 38313255
PXD049069 Dataset with its publication pending (from iProX)Dataset title: FBXO7 Ubiquitinates PRMT1 to Suppress Serine Synthesis and Tumor Growth in HCCPossible reference: Luo, L. et al. (2024) FBXO7 ubiquitinates PRMT1 to suppress serine synthesis and tumor growth in hepatocellular carcinoma., Nat Commun, PMID 38839752
PXD049046 Dataset with its publication pending (from PRIDE)Dataset title: A deterministic, c-di-GMP-dependent genetic program ensures the generation of phenotypically similar, symmetric daughter cells during cytokinesisPossible reference: Pérez-Burgos, M. et al. (2024) A deterministic, c-di-GMP-dependent program ensures the generation of phenotypically similar, symmetric daughter cells during cytokinesis., Nat Commun, PMID 39019889
PXD049023 Dataset with its publication pending (from iProX)Dataset title: Characteristics of changes in plasma proteome profiling after sleeve gastrectomyPossible reference: Zhang, Y. et al. (2024) Characteristics of changes in plasma proteome profiling after sleeve gastrectomy., Front Endocrinol (Lausanne), PMID 38375199
PXD049022 Dataset with its publication pending (from PRIDE)Dataset title: The functional small RNA interactome reveals targets for the vancomycin-responsive sRNA RsaOI in vancomycin tolerant Staphylococcus aureuPossible reference: Wu, W. et al. (2024) The functional small RNA interactome reveals targets for the vancomycin-responsive sRNA RsaOI in vancomycin-tolerant Staphylococcus aureus., mSystems, PMID 38534138
PXD049015 Dataset with its publication pending (from jPOST)Dataset title: Involvement of Glucosamine 6 phosphate isomerase 2 (GNPDA2) Overproduction in β-Amyloid and Tau P301L-driven pathomechanismsPossible reference: Lachén-Montes, M. et al. (2024) Involvement of Glucosamine 6 Phosphate Isomerase 2 (GNPDA2) Overproduction in β-Amyloid- and Tau P301L-Driven Pathomechanisms., Biomolecules, PMID 38672412
PXD049003 Dataset with its publication pending (from PRIDE)Dataset title: Deciphering Staphylococcus aureus-host dynamics using dual Activity-based protein profiling of ATP-interacting proteinsPossible reference: Ahator, SD. et al. (2024) Deciphering Staphylococcus aureus-host dynamics using dual activity-based protein profiling of ATP-interacting proteins., mSystems, PMID 38656122
PXD048995 Dataset with its publication pending (from iProX)Dataset title: Hypoxia promotes histone H3K9 lactylation to enhance LAMC2 transcription in esophageal squamous cell carcinomaPossible reference: Zang, Y. et al. (2024) Hypoxia promotes histone H3K9 lactylation to enhance LAMC2 transcription in esophageal squamous cell carcinoma., iScience, PMID 38989468
PXD048981 Dataset with its publication pending (from PRIDE)Dataset title: Lack of phosphatidylinositol 3-kinase VPS34 in regulatory T cells leads to a fatal lymphoproliferative disorder without affecting their developmentPossible reference: Courreges, CJF. et al. (2024) Lack of phosphatidylinositol 3-kinase VPS34 in regulatory T cells leads to a fatal lymphoproliferative disorder without affecting their development., Front Immunol, PMID 39664390
PXD048969 Dataset with its publication pending (from PRIDE)Dataset title: Extensive folding variability between homologous chromosomes in mammalian cellsPossible reference: Finn, EH. et al. (2022) Nuclear position modulates long-range chromatin interactions., PLoS Genet, PMID 36206323
PXD048959 Dataset with its publication pending (from iProX)Dataset title: Optimizing and integrating depletion and precipitation methods for plasma proteomics through data-independent acquisition-mass spectrometryPossible reference: Zhou, Y. et al. (2024) Optimizing and integrating depletion and precipitation methods for plasma proteomics through data-independent acquisition-mass spectrometry., J Chromatogr B Analyt Technol Biomed Life Sci, PMID 38382157
PXD048956 Dataset with its publication pending (from iProX)Dataset title: Functional study of EYA1 in glioma formation and progressionPossible reference: Wei, T. et al. (2025) Protein phosphatase EYA1 regulates the dephosphorylation and turnover of BCL2L12 to promote glioma development., Int J Biol Sci, PMID 39897043
PXD048952 Dataset with its publication pending (from iProX)Dataset title: Targeting REGγ proteasome to facilitate target protein degradationPossible reference: Zhang, M. et al. (2012) REGγ is a strong candidate for the regulation of cell cycle, proliferation and the invasion by poorly differentiated thyroid carcinoma cells., Braz J Med Biol Res, PMID 22415115
PXD048947 Dataset with its publication pending (from iProX)Dataset title: The mechanism of tigecycline resistance in Acinetobacter baumannii under sub-minimal inhibitory concentration tigecyclinePossible reference: Liu, C. et al. (2024) The Mechanism of Tigecycline Resistance in Acinetobacter baumannii under Sub-Minimal Inhibitory Concentrations of Tigecycline., Int J Mol Sci, PMID 38339095
PXD048915 Dataset with its publication pending (from PRIDE)Dataset title: Mechanism of Jianxin granules in the Treatment of Heart Failure Based on Proteomics and MetabolomicsPossible reference: Yongzhong, C. et al. (2024) Mechanism of jianxin granules in the treatment of heart failure based on proteomics and metabolomics., Chin Med, PMID 39605071
PXD048911 no publication (from MassIVE)Dataset title: Coupling microdroplet-based sample preparation, multiplexed isobaric labeling, and nanoflow peptide fractionation for deep proteome profiling of tissue microenvironmentPossible reference: VeliÄković, M. et al. (2023) Coupling microdroplet-based sample preparation, multiplexed isobaric labeling, and nanoflow peptide fractionation for deep proteome profiling of tissue microenvironment., bioRxiv, PMID 36993277
PXD048909 Dataset with its publication pending (from PRIDE)Dataset title: CTDP1 and RPB7 Stabilize Pol II and Permit ReinitiationPossible reference: Zheng, H. et al. (2025) CTDP1 and RPB7 stabilize Pol II and permit reinitiation., Nat Commun, PMID 40038320
PXD048893 Dataset with its publication pending (from jPOST)Dataset title: Volatile communication in plants relies on a KAI2-mediated signaling pathwayPossible reference: Stirling, SA. et al. (2024) Volatile communication in plants relies on a KAI2-mediated signaling pathway., Science, PMID 38513014
PXD048870 Dataset with its publication pending (from PRIDE)Dataset title: Identifying cellular RNA-binding proteins during infection uncovers a role for MKRN2 in influenza mRNA trafficking.Possible reference: Bonazza, S. et al. (2024) Identifying cellular RNA-binding proteins during infection uncovers a role for MKRN2 in influenza mRNA trafficking., PLoS Pathog, PMID 38753876
PXD048855 Dataset with its publication pending (from iProX)Dataset title: Unravelling Intracellular Protein Corona Components of Nanoplas-tics via Photocatalytic Protein Proximity LabelingPossible reference: Zhang, Z. et al. (2024) Unraveling Intracellular Protein Corona Components of Nanoplastics via Photocatalytic Protein Proximity Labeling., Anal Chem, PMID 38471057
PXD048849 Dataset with its publication pending (from PRIDE)Dataset title: Detection of structure-specific interactions of Rab GTPasesPossible reference: Holfeld, A. et al. (2024) Systematic identification of structure-specific protein-protein interactions., Mol Syst Biol, PMID 38702390
PXD048833 Dataset with its publication pending (from PRIDE)Dataset title: Human aneuploid cells depend on the RAF/MEK/ERK pathway for overcoming increased DNA damagePossible reference: Zerbib, J. et al. (2024) Human aneuploid cells depend on the RAF/MEK/ERK pathway for overcoming increased DNA damage., Nat Commun, PMID 39251587
PXD048829 Dataset with its publication pending (from PRIDE)Dataset title: Fibroblasts’ secretome from calcified and non-calcified dermis in Pseudoxanthoma elasticum differently contributes to elastin calcification.Possible reference: Lofaro, FD. et al. (2024) Fibroblasts' secretome from calcified and non-calcified dermis in Pseudoxanthoma elasticum differently contributes to elastin calcification., Commun Biol, PMID 38755434
PXD048820 Dataset with its publication pending (from iProX)Dataset title: Cpt1a drives Lipid remodeling in Primed-to-Naïve Pluripotency TransitionPossible reference: Ma, Z. et al. (2024) Cpt1a Drives primed-to-naïve pluripotency transition through lipid remodeling., Commun Biol, PMID 39349670
PXD048803 Dataset with its publication pending (from PRIDE)Dataset title: Legume resistance against pathogen is enhanced by rhizobia and does not impair mutualismPossible reference: Hernández-Reyes, C. et al. (2014) N-acyl-homoserine lactones-producing bacteria protect plants against plant and human pathogens., Microb Biotechnol, PMID 25234390
PXD048799 Dataset with its publication pending (from PRIDE)Dataset title: GlPRMT5 inhibits GlPP2C1 via symmetric dimethylation and regulates the biosynthesis of secondary metabolites in Ganoderma lucidumPossible reference: Wang, Z. et al. (2024) GlPRMT5 inhibits GlPP2C1 via symmetric dimethylation and regulates the biosynthesis of secondary metabolites in Ganoderma lucidum., Commun Biol, PMID 38418849
PXD048756 Dataset with its publication pending (from PRIDE)Dataset title: MS-CETSA Target Identification of MMV007574Possible reference: Dziekan, JM. et al. (2019) Identifying purine nucleoside phosphorylase as the target of quinine using cellular thermal shift assay., Sci Transl Med, PMID 30602534
PXD048752 Dataset with its publication pending (from PRIDE)Dataset title: MS-CETSA Target Identification of MMV665971Possible reference: Dziekan, JM. et al. (2019) Identifying purine nucleoside phosphorylase as the target of quinine using cellular thermal shift assay., Sci Transl Med, PMID 30602534
PXD048750 Dataset with its publication pending (from PRIDE)Dataset title: MS-CETSA Target Identification of MMV006656.Possible reference: Dziekan, JM. et al. (2019) Identifying purine nucleoside phosphorylase as the target of quinine using cellular thermal shift assay., Sci Transl Med, PMID 30602534
PXD048737 Dataset with its publication pending (from PRIDE)Dataset title: MS-CETSA Target Identification of MMV000848Possible reference: Wirjanata, G. et al. (2024) Identification of an inhibitory pocket in falcilysin provides a new avenue for malaria drug development., Cell Chem Biol, PMID 38593807
PXD048708 Dataset with its publication pending (from iProX)Dataset title: DIA of bone tissue in Femoral Head OsteonecrosisPossible reference: Zhao, G. et al. (2024) Exploring molecular mechanisms of intra-articular changes in osteonecrosis of femoral head using DIA proteomics and bioinformatics., J Orthop Surg Res, PMID 38169408
PXD048706 Dataset with its publication pending (from iProX)Dataset title: Integrated multi-omics analysis reveals osteokines involved in global regulationPossible reference: Liang, W. et al. (2024) An integrated multi-omics analysis reveals osteokines involved in global regulation., Cell Metab, PMID 38574738
PXD048703 Dataset with its publication pending (from iProX)Dataset title: Identification of O-GlcNAc proteins and glycosites using bioorthogonal ligation-tryptic cleavage strategyPossible reference: Xiong, Y. et al. (2024) Rapid and large-scale glycopeptide enrichment strategy based on chemical ligation., Natl Sci Rev, PMID 39534244
PXD048700 no publication (from MassIVE)Dataset title: Mitochondrial respiration is a targetable vulnerability of endocrine persistence in ER+ breast cancerPossible reference: Tau, S. et al. (2024) Endocrine persistence in ER+ breast cancer is accompanied by metabolic vulnerability in oxidative phosphorylation., bioRxiv, PMID 39386444
PXD048693 Dataset with its publication pending (from PRIDE)Dataset title: CRISPR screen for protein inclusion formation uncovers a role for SRRD in the regulation of intermediate filament dynamics and aggresome assemblyPossible reference: Sweeney, KM. et al. (2024) CRISPR screen for protein inclusion formation uncovers a role for SRRD in the regulation of intermediate filament dynamics and aggresome assembly., PLoS Genet, PMID 38315730
PXD048682 Dataset with its publication pending (from PRIDE)Dataset title: Mitochondrial calcium uniporter complex controls T‑cell‑mediated immune responsesPossible reference: Shumanska, M. et al. (2025) Mitochondrial calcium uniporter complex controls T-cell-mediated immune responses., EMBO Rep, PMID 39623165
PXD048658 Dataset with its publication pending (from PRIDE)Dataset title: Aging aggravates aortic aneurysm and dissection via the miR-1204-MYLK signaling axisPossible reference: Liu, ZL. et al. (2024) Aging aggravates aortic aneurysm and dissection via miR-1204-MYLK signaling axis in mice., Nat Commun, PMID 39013850
PXD048650 Dataset with its publication pending (from PRIDE)Dataset title: Mitochondrial calcium uniporter complex controls T-cell-mediated immune responsesPossible reference: Shumanska, M. et al. (2025) Mitochondrial calcium uniporter complex controls T-cell-mediated immune responses., EMBO Rep, PMID 39623165
PXD048648 Dataset with its publication pending (from PRIDE)Dataset title: Metabolic engineering of Saccharomyces cerevisiae and role of transcription factor Znf1 Possible reference: Songdech, P. et al. (2020) Overexpression of Transcription Factor ZNF1 of Glycolysis Improves Bioethanol Productivity under High Glucose Concentration and Enhances Acetic Acid Tolerance of Saccharomyces cerevisiae., Biotechnol J, PMID 32196937
PXD048646 Dataset with its publication pending (from PRIDE)Dataset title: Dynamic regulation of integrin β1 phosphorylation supports invasion of breast cancer cellsPossible reference: Antelmi, E. et al. (2013) ß1 integrin binding phosphorylates ezrin at T567 to activate a lipid raft signalsome driving invadopodia activity and invasion., PLoS One, PMID 24086451
PXD048636 Dataset with its publication pending (from iProX)Dataset title: Alterations in Placental Proteomics Induced by Intrauterine HyperglycemiaPossible reference: Ren, ZR. et al. (2024) Sex-Specific Alterations in Placental Proteomics Induced by Intrauterine Hyperglycemia., J Proteome Res, PMID 38470452
PXD048632 Dataset with its publication pending (from PRIDE)Dataset title: MACSPI Enables Tissue-Selective Proteomic and Interactomic Analyses in Multicellular OrganismsPossible reference: Huang, S. et al. (2024) MACSPI enables tissue-selective proteomic and interactomic analyses in multicellular organisms., Proc Natl Acad Sci U S A, PMID 38753516
PXD048601 Dataset with its publication pending (from PRIDE)Dataset title: Extracellular vesicle formation in Cryptococcus deuterogattii impacts fungal virulencePossible reference: Castelli, RF. et al. (2022) Extracellular Vesicle Formation in Cryptococcus deuterogattii Impacts Fungal Virulence and Requires the NOP16 Gene., Infect Immun, PMID 35862719
PXD048592 Dataset with its publication pending (from iProX)Dataset title: KDF1 interacting protein in the ameloblast cell linePossible reference: Liu, H. et al. (2024) KDF1 promotes ameloblast differentiation by inhibiting the IKK/IκB/NF-κB axis., J Cell Physiol, PMID 39300779
PXD048588 Dataset with its publication pending (from jPOST)Dataset title: core fucosylation as well as their modified glycoproteins associated with diseasesPossible reference: Liu, S. et al. (2021) IgG N-glycans., Adv Clin Chem, PMID 34809825
PXD048587 Dataset with its publication pending (from iProX)Dataset title: EFHD2 Suppresses Intestinal Inflammation by Blocking Intestinal Epithelial Cell TNFR1 Internalization and Cell DeathPossible reference: Wu, J. et al. (2024) EFHD2 suppresses intestinal inflammation by blocking intestinal epithelial cell TNFR1 internalization and cell death., Nat Commun, PMID 38346956
PXD048581 Dataset with its publication pending (from iProX)Dataset title: Antimicrobial activity and multi-targeted mechanism of action of suberanilic acid against methicillin-resistant Staphylococcus aureusPossible reference: Wen, J. et al. (2024) Antibacterial Activity and Multi-Targeted Mechanism of Action of Suberanilic Acid Isolated from Pestalotiopsis trachycarpicola DCL44: An Endophytic Fungi from Ageratina adenophora., Molecules, PMID 39275053
PXD048574 Dataset with its publication pending (from iProX)Dataset title: Transcription factor ZNF263 enhances EGFR-targeted therapeutic response and reduces residual disease in lung adenocarcinomaPossible reference: Liang, J. et al. (2024) Transcription factor ZNF263 enhances EGFR-targeted therapeutic response and reduces residual disease in lung adenocarcinoma., Cell Rep, PMID 38335093
PXD048573 Dataset with its publication pending (from iProX)Dataset title: Phenol degrading manganese oxidizing Pseudomonas AN-1Possible reference: Qiao, A. et al. (2024) Can xenobiotics support the growth of Mn(II)-oxidizing bacteria (MnOB)? A case of phenol-utilizing bacteria Pseudomonas sp. AN-1., J Hazard Mater, PMID 38521035
PXD048554 Dataset with its publication pending (from jPOST)Dataset title: The N-acetylglucosaminyltransferase Radical Fringe contributes to defects in JAG1-dependent turnover and signaling of NOTCH3 CADASIL mutantsPossible reference: Suzuki, S. et al. (2024) The N-acetylglucosaminyltransferase Radical fringe contributes to defects in JAG1-dependent turnover and signaling of NOTCH3 CADASIL mutants., J Biol Chem, PMID 39303912
PXD048553 Dataset with its publication pending (from PRIDE)Dataset title: A new technology for isolating organellar membranes provides fingerprints of lipid bilayer stressPossible reference: Reinhard, J. et al. (2024) MemPrep, a new technology for isolating organellar membranes provides fingerprints of lipid bilayer stress., EMBO J, PMID 38491296
PXD048511 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic analysis of serum small extracellular vesicles identifies diagnostic biomarkers for neuroblastomaPossible reference: Cheng, J. et al. (2024) Proteomic analysis of serum small extracellular vesicles identifies diagnostic biomarkers for neuroblastoma., Front Oncol, PMID 39228987
PXD048503 Dataset with its publication pending (from PRIDE)Dataset title: ERLIN1 and ERLIN2 scaffolds bridge TMUB1 and RNF170 and restrict cholesterol esterification to regulate the secretory pathwayPossible reference: Veronese, M. et al. (2024) ERLIN1/2 scaffolds bridge TMUB1 and RNF170 and restrict cholesterol esterification to regulate the secretory pathway., Life Sci Alliance, PMID 38782601
PXD048484 Dataset with its publication pending (from iProX)Dataset title: Simultaneous identification of O-GlcNAc sites and N-glycosites by a two-step enzymatic release strategyPossible reference: Xiong, Y. et al. (2024) Rapid and large-scale glycopeptide enrichment strategy based on chemical ligation., Natl Sci Rev, PMID 39534244
PXD048481 Dataset with its publication pending (from jPOST)Dataset title: Proteome analysis of mouse liver at ad libitum feedingPossible reference: Doelman, J. et al. (2012) Transcript profiling of the ruminant liver indicates a unique program of transcriptional regulation of ketogenic enzymes during food restriction., Comp Biochem Physiol Part D Genomics Proteomics, PMID 22748507
PXD048469 no publication (from MassIVE)Dataset title: Uncovering missing glycans and unexpected fragments with pGlycoNovo: a full-range Y-ion dynamic searching strategy for site-specific glycosylation analysis across speciesPossible reference: Zeng, WF. et al. (2024) Uncovering missing glycans and unexpected fragments with pGlycoNovo for site-specific glycosylation analysis across species., Nat Commun, PMID 39277585
PXD048443 Dataset with its publication pending (from iProX)Dataset title: Biomarkers of lung metastasis in differentiated thyroid cancer based on proteomic analysisPossible reference: Nikas, IP. et al. (2022) The application of high-throughput proteomics in cytopathology., J Pathol Transl Med, PMID 36345621
PXD048432 Dataset with its publication pending (from iProX)Dataset title: Proteome of B. subtilis with and without sodium nitratePossible reference: Xia, L. et al. (2024) Enhancing surfactin production in Bacillus subtilis: Insights from proteomic analysis of nitrate-induced overproduction and strategies for combinatorial metabolic engineering., Bioresour Technol, PMID 38417461
PXD048429 Dataset with its publication pending (from iProX)Dataset title: The Small Extracellular Vesicle-Mediated Intercellular Transformation of CXCR1-Low to CXCR1-High Tumor Cells Promotes the Progression of Head and Neck Squamous Cell CarcinomaPossible reference: Xu, Q. et al. (2024) The small extracellular vesicle-mediated intercellular transformation of CXCR1Low to CXCR1High tumour cells promotes the progression of head and neck squamous cell carcinoma., J Extracell Vesicles, PMID 38545803
PXD048425 Dataset with its publication pending (from iProX)Dataset title: USP36 variant confers resistance to EGFR-TKIsPossible reference: Guan, S. et al. (2024) Germline USP36 Mutation Confers Resistance to EGFR-TKIs by Upregulating MLLT3 Expression in Patients with Non-Small Cell Lung Cancer., Clin Cancer Res, PMID 38261467
PXD048423 Dataset with its publication pending (from iProX)Dataset title: Spindle apparatus coiled-coil protein 1 (SPDL1) serves as a novel prognostic biomarker in triple-negative breast cancerPossible reference: Yang, XY. et al. (2024) Spindle apparatus coiled-coil protein 1 (SPDL1) serves as a novel prognostic biomarker in triple-negative breast cancer., Proteomics Clin Appl, PMID 38316615
PXD048382 Dataset with its publication pending (from PRIDE)Dataset title: An inhibitory segment within G-patch activators tunes Prp43-ATPase activity during ribosome assemblyPossible reference: Portugal-Calisto, D. et al. (2024) An inhibitory segment within G-patch activators tunes Prp43-ATPase activity during ribosome assembly., Nat Commun, PMID 39578461
PXD048378 Dataset with its publication pending (from PRIDE)Dataset title: Regional differences in the small intestinal proteome of control mice and of mice lacking lysosomal acid lipasePossible reference: Bianco, V. et al. (2024) Regional Differences in the Small Intestinal Proteome of Control Mice and of Mice Lacking Lysosomal Acid Lipase., J Proteome Res, PMID 38422518
PXD048368 Dataset with its publication pending (from iProX)Dataset title: Proteomics analysis of Pseudoduganella aquatica HC52-OMVsPossible reference: Park, Y. et al. (2024) Alleviation of H2O2 toxicity by extracellular catalases in the phycosphere of Microcystis aeruginosa., Harmful Algae, PMID 39003030
PXD048365 Dataset with its publication pending (from jPOST)Dataset title: Inhibitory effect of S-Allylmercaptocysteine on TLR4-mediated inflammation in mammary epithelial cellsPossible reference: Takashima, M. et al. (2024) S-allylmercaptocysteine inhibits TLR4-mediated inflammation through enhanced formation of inhibitory MyD88 splice variant in mammary epithelial cells., Sci Rep, PMID 39609525
PXD048356 no publication (from MassIVE)Dataset title: Calorie restriction and rapamycin distinctly mitigate aging-associated protein phosphorylation changes in mouse musclesPossible reference: Ataman, M. et al. (2024) Calorie restriction and rapamycin distinctly mitigate aging-associated protein phosphorylation changes in mouse muscles., Commun Biol, PMID 39127848
PXD048346 Dataset with its publication pending (from PRIDE)Dataset title: Pupylation-based proximity labelling reveals regulatory factors in cellulose biosynthesis in ArabidopsisPossible reference: Zheng, S. et al. (2025) Pupylation-based proximity labeling reveals regulatory factors in cellulose biosynthesis in Arabidopsis., Nat Commun, PMID 39833163
PXD048284 Dataset with its publication pending (from jPOST)Dataset title: Volatile communication in plants relies on a KAI2-mediated signaling pathwayPossible reference: Stirling, SA. et al. (2024) Volatile communication in plants relies on a KAI2-mediated signaling pathway., Science, PMID 38513014
PXD048272 Dataset with its publication pending (from PRIDE)Dataset title: Mapping in silico genetic networks of tumour suppressor gene to uncover novel functional associations and cancer cell vulnerabilitiesPossible reference: Takemon, Y. et al. (2024) Mapping in silico genetic networks of the KMT2D tumour suppressor gene to uncover novel functional associations and cancer cell vulnerabilities., Genome Med, PMID 39578878
PXD048264 Dataset with its publication pending (from PRIDE)Dataset title: Exaptation of an evolutionary constraint enables behavioural control over the composition of secreted venom in giant centipedesPossible reference: Schendel, V. et al. (2025) Exaptation of an evolutionary constraint enables behavioural control over the composition of secreted venom in a giant centipede., Nat Ecol Evol, PMID 39496866
PXD048258 no publication (from MassIVE)Dataset title: A mechanism that transduces lysosomal damage signals to stress granule formation for cell survivalPossible reference: Duran, J. et al. (2024) A mechanism that transduces lysosomal damage signals to stress granule formation for cell survival., bioRxiv, PMID 38617306
PXD048243 Dataset with its publication pending (from iProX)Dataset title: Thermal proteome profiling reveals fructose-1,6-bisphosphate as a phosphate donor to activate phosphoglycerate mutase 1Possible reference: Zhang, Y. et al. (2024) Thermal proteome profiling reveals fructose-1,6-bisphosphate as a phosphate donor to activate phosphoglycerate mutase 1., Nat Commun, PMID 39414782
PXD048239 Dataset with its publication pending (from PRIDE)Dataset title: Salt stress in freshwater anaerobic methane-oxidizing archaeaPossible reference: Echeveste Medrano, MJ. et al. (2024) Osmoregulation in freshwater anaerobic methane-oxidizing archaea under salt stress., ISME J, PMID 39030685
PXD048237 Dataset with its publication pending (from iProX)Dataset title: Kidney Proteomic analysis on Kidney of chronic heart failure micePossible reference: Hölper, S. et al. (2015) Dissection of metabolic pathways in the Db/Db mouse model by integrative proteome and acetylome analysis., Mol Biosyst, PMID 25592279
PXD048234 Dataset with its publication pending (from iProX)Dataset title: O-GlcNAcylation of E3 ubiquitin ligase SKP2 promotes hepatocellular carcinoma proliferationPossible reference: Feng, Z. et al. (2024) O-GlcNAcylation of E3 ubiquitin ligase SKP2 promotes hepatocellular carcinoma proliferation., Oncogene, PMID 38396292
PXD048217 Dataset with its publication pending (from iProX)Dataset title: The mechanisms of chitosan to enhance the biological control efficacy of Wickerhamomyces anomalus against blue mold decay of grapesPossible reference: Guo, S. et al. (2025) Effect of volatile compounds produced by Wickerhamomyces anomalus induced with chitosan against blue mold disease in table grapes., Int J Biol Macromol, PMID 40118422
PXD048216 Dataset with its publication pending (from PRIDE)Dataset title: S-palmitoylation of MAP kinase is essential for fungal virulencePossible reference: Duan, Y. et al. (2024) S-palmitoylation of MAP kinase is essential for fungal virulence., mBio, PMID 39470248
PXD048184 Dataset with its publication pending (from PRIDE)Dataset title: Asp23-controlled cell wall imbalance promotes membrane vesicles biogenesis in Staphylococcus aureusPossible reference: Li, J. et al. (2024) Alkaline shock protein 23 (Asp23)-controlled cell wall imbalance promotes membrane vesicle biogenesis in Staphylococcus aureus., J Extracell Vesicles, PMID 39193667
PXD048156 Dataset with its publication pending (from iProX)Dataset title: Histone-like transcription factor Hfl1p in Candida albicans harmonizes nuclear and mitochondrial genomic network in regulation of energy metabolism and filamentation developmentPossible reference: She, X. et al. (2024) Histone-like transcription factor Hfl1p in Candida albicans harmonizes nuclear and mitochondrial genomic network in regulation of energy metabolism and filamentation development., Virulence, PMID 39370643
PXD048154 Dataset with its publication pending (from iProX)Dataset title: Proteomic Analysis of Infrapatellar Fat Pad in OsteoarthritisPossible reference: Bravo, B. et al. (2019) Gene expression, protein profiling, and chemotactic activity of infrapatellar fat pad mesenchymal stem cells in pathologies of the knee joint., J Cell Physiol, PMID 30912165
PXD048142 Dataset with its publication pending (from PRIDE)Dataset title: Proteome Changes Induced by Hydrogen Peroxide in Sugarcane PlantsPossible reference: Trentin, AR. et al. (2015) Proteome readjustments in the apoplastic space of Arabidopsis thaliana ggt1 mutant leaves exposed to UV-B radiation., Front Plant Sci, PMID 25852701
PXD048134 Dataset with its publication pending (from iProX)Dataset title: Comparative analysis of phosphorylated proteomes between plerocercoid and adult Spirometra mansoni reveal phosphoproteomic proflings of the medical tapewormPossible reference: Liu, YY. et al. (2024) Comparative analysis of phosphorylated proteomes between plerocercoid and adult Spirometra mansoni reveals phosphoproteomic profiles of the medical tapeworm., Parasit Vectors, PMID 39217359
PXD048127 Dataset with its publication pending (from iProX)Dataset title: Genetic code expansion reveals site-specific lactylation in living cells reshapes protein functionPossible reference: Shao, C. et al. (2025) Genetic code expansion reveals site-specific lactylation in living cells reshapes protein functions., Nat Commun, PMID 39779673
PXD048122 Dataset with its publication pending (from iProX)Dataset title: Metaproteomics analysis of shower hoses biofilmPossible reference: Yao, M. et al. (2025) Unveiling the influence of heating temperature on biofilm formation in shower hoses through multi-omics., Water Res, PMID 39481332
PXD048104 Dataset with its publication pending (from iProX)Dataset title: Serum proteome of wild-type mice injected with TNFPossible reference: Li, Y. et al. (2016) Endogenous n-3 Polyunsaturated Fatty Acids Attenuate T Cell-Mediated Hepatitis via Autophagy Activation., Front Immunol, PMID 27679638
PXD048093 Dataset with its publication pending (from PRIDE)Dataset title: The proteome sequencing of ectopic and paired eutopic endometriaPossible reference: Liu, F. et al. (2021) Endometrial stromal cell proteomic analysis reveals LIM and SH3 protein 1 (LASP1) plays important roles in the progression of adenomyosis., Mol Hum Reprod, PMID 33543750
PXD048065 Dataset with its publication pending (from iProX)Dataset title: Proteomic analysis of diapause and non-diapause stages of Loxostege sticticalisPossible reference: Shao, L. et al. (2024) Comparative Proteomics and Metabonomics Analysis of Different Diapause Stages Revealed a New Regulation Mechanism of Diapause in Loxostege sticticalis (Lepidoptera: Pyralidae)., Molecules, PMID 39124877
PXD048063 Dataset with its publication pending (from iProX)Dataset title: Proteomics of plasma exosomes reveals S100A8 as a novel biomarker for Alzheimer’s disease: a preliminary studyPossible reference: Zhang, Y. et al. (2024) Proteomics of plasma-derived extracellular vesicles reveals S100A8 as a novel biomarker for Alzheimer's disease: A preliminary study., J Proteomics, PMID 39159863
PXD048056 Dataset with its publication pending (from PRIDE)Dataset title: Monocarboxylate transporters facilitate succinate uptake into brown adipocytesPossible reference: Reddy, A. et al. (2023) Monocarboxylate transporters facilitate succinate uptake into brown adipocytes., bioRxiv, PMID 36909624
PXD048045 Dataset with its publication pending (from PRIDE)Dataset title: Loss of the E3 ubiquitin ligase Trim9 or Trim67 alters the post-synaptic density proteomePossible reference: Okaichi, K. et al. (2013) Transcriptional specificity in various p53-mutant cells., Anticancer Res, PMID 23482763
PXD048035 Dataset with its publication pending (from PRIDE)Dataset title: Adaptive laboratory evolution recruits the promiscuity of succinate semialdehyde dehydrogenase to repair different metabolic deficienciesPossible reference: He, H. et al. (2024) Adaptive laboratory evolution recruits the promiscuity of succinate semialdehyde dehydrogenase to repair different metabolic deficiencies., Nat Commun, PMID 39406738
PXD048024 Dataset with its publication pending (from PRIDE)Dataset title: Molecular-Level Architecture of Chlamydomonas reinhardtii’s Glycoprotein-Rich Cell WallPossible reference: Poulhazan, A. et al. (2024) Molecular-level architecture of Chlamydomonas reinhardtii's glycoprotein-rich cell wall., Nat Commun, PMID 38307857
PXD048016 Dataset with its publication pending (from PRIDE)Dataset title: Optimization of protein identifications by exploring several crhomatographic and search engine parametersPossible reference: Muth, T. et al. (2015) Navigating through metaproteomics data: a logbook of database searching., Proteomics, PMID 25778831
PXD048004 Dataset with its publication pending (from PRIDE)Dataset title: A pathogenic role for mitochondrial dysfunction and oxidative stress in myositisPossible reference: Abad, C. et al. (2024) IFNγ causes mitochondrial dysfunction and oxidative stress in myositis., Nat Commun, PMID 38926363
PXD047990 Dataset with its publication pending (from jPOST)Dataset title: Global proteome of the saprophytic strain Leptospira biflexaPossible reference: Nascimento Filho, EG. et al. (2024) Global proteome of the saprophytic strain Leptospira biflexa and comparative analysis with pathogenic strain Leptospira interrogans uncover new pathogenesis mechanisms., J Proteomics, PMID 38364905
PXD047982 Dataset with its publication pending (from iProX)Dataset title: Characterization of Testicular O-glycoproteome during Spermatogenesis in MicePossible reference: Liu, Q. et al. (2025) Global characterization of mouse testis O-glycoproteome landscape during spermatogenesis., Nat Commun, PMID 40102425
PXD047978 Dataset with its publication pending (from iProX)Dataset title: Delineation of renal protein profiles in aristolochic acid I-induced nephrotoxicity in mice by label-free quantitative proteomicsPossible reference: Liu, X. et al. (2024) Delineation of renal protein profiles in aristolochic acid I-induced nephrotoxicity in mice by label-free quantitative proteomics., Front Pharmacol, PMID 38783935
PXD047926 Dataset with its publication pending (from iProX)Dataset title: Plasma proteome of high-altitude populationPossible reference: Padhy, G. et al. (2017) Plasma Proteomics of Ladakhi Natives Reveal Functional Regulation Between Renin-Angiotensin System and eNOS-cGMP Pathway., High Alt Med Biol, PMID 27740865
PXD047909 no publication (from MassIVE)Dataset title: Zika Virus NS1 Drives Tunneling Nanotube Formation for Mitochondrial Transfer, Enhanced Survival, Interferon Evasion, and Stealth Transmission in Trophoblasts Possible reference: Mysorekar, I. et al. (2023) Zika Virus NS1 Drives Tunneling Nanotube Formation for Mitochondrial Transfer, Enhanced Survival, Interferon Evasion, and Stealth Transmission in Trophoblasts., Res Sq, PMID 38106210
PXD047891 Dataset with its publication pending (from iProX)Dataset title: PARylation of 14-3-3 proteins control the virulence of Magnaporthe oryzaePossible reference: Gao, X. et al. (2024) PARylation of 14-3-3 proteins controls the virulence of Magnaporthe oryzae., Nat Commun, PMID 39277621
PXD047880 Dataset with its publication pending (from iProX)Dataset title: Extracellular vesicles of Lactobacillus johnsoniiPossible reference: Shin, CM. et al. (2021) Validity and safety of ID-JPL934 in lower gastrointestinal symptom improvement., Sci Rep, PMID 34158518
PXD047872 Dataset with its publication pending (from PRIDE)Dataset title: Investigating HMGB1 as a Potential Serum Biomarker for Early Diabetic Nephropathy Monitoring by Quantitative ProteomicsPossible reference: Peng, R. et al. (2024) Investigating HMGB1 as a potential serum biomarker for early diabetic nephropathy monitoring by quantitative proteomics., iScience, PMID 38303703
PXD047866 Dataset with its publication pending (from PRIDE)Dataset title: Substrate identification and specificity profiling of deubiquitylases against endogenously-generated ubiquitin-protein conjugatesPossible reference: Rossio, V. et al. (2023) Substrate identification and specificity profiling of deubiquitylases against endogenously-generated ubiquitin-protein conjugates., bioRxiv, PMID 38187689
PXD047864 Dataset with its publication pending (from PRIDE)Dataset title: Inflammation causes insulin resistance via IRF3-mediated reduction in FAHFA levelsPossible reference: Yan, S. et al. (2024) Inflammation causes insulin resistance in mice via interferon regulatory factor 3 (IRF3)-mediated reduction in FAHFA levels., Nat Commun, PMID 38816388
PXD047859 Dataset with its publication pending (from PRIDE)Dataset title: Enhanced Staphylococcus aureus vaccine protection by uncoupling of the alpha-toxin-ADAM10 interactionPossible reference: Tomaszewski, KL. et al. (2024) Enhanced Staphylococcus aureus protection by uncoupling of the α-toxin-ADAM10 interaction during murine neonatal vaccination., Nat Commun, PMID 39379345
PXD047841 Dataset with its publication pending (from PRIDE)Dataset title: Parallel control of cold-triggered adipocyte thermogenesis by UCP1 and CKBPossible reference: Rahbani, JF. et al. (2024) Parallel control of cold-triggered adipocyte thermogenesis by UCP1 and CKB., Cell Metab, PMID 38272036
PXD047837 Dataset with its publication pending (from PRIDE)Dataset title: ATM Inhibition Exploits Checkpoint Defects and ATM-Dependent Double Strand Break Repair in TP53-Mutant GlioblastomaPossible reference: Laverty, DJ. et al. (2024) ATM inhibition exploits checkpoint defects and ATM-dependent double strand break repair in TP53-mutant glioblastoma., Nat Commun, PMID 38906885
PXD047810 Dataset with its publication pending (from iProX)Dataset title: Phosphoproteomics profiling of sorafenib-resistant HCC patient-derived xenografts reveals potential therapeutic strategiesPossible reference: Li, F. et al. (2025) Phosphoproteomics profiling of sorafenib-resistant hepatocellular carcinoma patient-derived xenografts reveals potential therapeutic strategies., iScience, PMID 39886465
PXD047809 Dataset with its publication pending (from iProX)Dataset title: Enhancing Tendon Regeneration: Investigating the Impact of Topography on the Secretome of Adipose-Derived Stem CellsPossible reference: Long, Q. et al. (2025) Enhancing Tendon Regeneration: Investigating the Impact of Topography on the Secretome of Adipose-Derived Stem Cells., Adv Sci (Weinh), PMID 40091553
PXD047799 no publication (from MassIVE)Dataset title: Decrypting the molecular basis of cellular drug phenotypes by dose-resolved expression proteomicsPossible reference: Eckert, S. et al. (2025) Decrypting the molecular basis of cellular drug phenotypes by dose-resolved expression proteomics., Nat Biotechnol, PMID 38714896
PXD047795 Dataset with its publication pending (from PRIDE)Dataset title: Nitrogen signaling factor triggers a respiration-like gene expression programPossible reference: Ohsawa, S. et al. (2024) Nitrogen signaling factor triggers a respiration-like gene expression program in fission yeast., EMBO J, PMID 39256560
PXD047793 Dataset with its publication pending (from PRIDE)Dataset title: A hybrid DDA/DIA-PASEF based assay library for a deep proteotyping of triple-negative breast cancerPossible reference: Lapcik, P. et al. (2024) A hybrid DDA/DIA-PASEF based assay library for a deep proteotyping of triple-negative breast cancer., Sci Data, PMID 39025866
PXD047749 Dataset with its publication pending (from PRIDE)Dataset title: Preclinical study with a CD40 agonist on patient-derived xenograft mice for the treatment of B-cell acute lymphoblastic leukemiaPossible reference: Bellaye, PS. et al. (2025) CD40 Agonist on Patient-Derived Xenograft Mice for the Treatment of B-Cell Acute Lymphoblastic Leukemia., Clin Cancer Res, PMID 39540842
PXD047719 no publication (from MassIVE)Dataset title: Native Top-Down Mass Spectrometry for Characterizing Sarcomeric Proteins Directly from Cardiac Tissue LysatePossible reference: Chapman, EA. et al. (2024) Native Top-Down Mass Spectrometry for Characterizing Sarcomeric Proteins Directly from Cardiac Tissue Lysate., J Am Soc Mass Spectrom, PMID 38422011
PXD047709 Dataset with its publication pending (from PRIDE)Dataset title: Quantitative modelling of B cell signaling in aggressive B cell lymphomaPossible reference: Hegde, GV. et al. (2012) Novel therapy for therapy-resistant mantle cell lymphoma: multipronged approach with targeting of hedgehog signaling., Int J Cancer, PMID 22511234
PXD047707 Dataset with its publication pending (from PRIDE)Dataset title: Integrative transcriptomic and proteomic profiling of the effects of cell confluency on gene expressionPossible reference: Lobo, V. et al. (2024) Integrative transcriptomic and proteomic profiling of the effects of cell confluency on gene expression., Sci Data, PMID 38866801
PXD047700 Dataset with its publication pending (from PRIDE)Dataset title: HYPK controls stability and catalytic activity of the N-terminal acetyltransferase A in Arabidopsis thalianaPossible reference: Gong, X. et al. (2024) HYPK controls stability and catalytic activity of the N-terminal acetyltransferase A in Arabidopsis thaliana., Cell Rep, PMID 38363676
PXD047680 no publication (from MassIVE)Dataset title: Small-scale Serial Size Exclusion Chromatography (s3SEC) for High Sensitivity Top-down Proteomics of Large ProteoformsPossible reference: Rogers, HT. et al. (2024) Small-Scale Serial Size Exclusion Chromatography (s3SEC) for High Sensitivity Top-Down Proteomics of Large Proteoforms., Anal Chem, PMID 38315630
PXD047674 Dataset with its publication pending (from PRIDE)Dataset title: Mass spectrometry-based proteomic profiling of exosomal proteins in diabetic and non-diabetic ischemic stroke patients: a case-control studyPossible reference: Qadri, S. et al. (2024) Mass spectrometry-based proteomic profiling of extracellular vesicle proteins in diabetic and non-diabetic ischemic stroke patients: a case-control study., Front Mol Biosci, PMID 38948080
PXD047650 Dataset with its publication pending (from PRIDE)Dataset title: Evaluation of secretomes derived from human dermal and adipose tissue mesenchymal stem/stromal cells for skin wound healing: Not as effective as cellsPossible reference: Zomer, HD. et al. (2024) Evaluation of secretomes derived from human dermal and adipose tissue mesenchymal stem/stromal cells for skin wound healing: not as effective as cells., Stem Cell Res Ther, PMID 38229157
PXD047643 Dataset with its publication pending (from PRIDE)Dataset title: Chromosome end protection by RAP1-mediated inhibition of DNA-PKPossible reference: Eickhoff, P. et al. (2025) Chromosome end protection by RAP1-mediated inhibition of DNA-PK., Nature, PMID 40240611
PXD047641 Dataset with its publication pending (from PRIDE)Dataset title: NeoDisc: A neoantigen discovery pipeline for the development of personalized cancer immunotherapyPossible reference: Huber, F. et al. (2024) A comprehensive proteogenomic pipeline for neoantigen discovery to advance personalized cancer immunotherapy., Nat Biotechnol, PMID 39394480
PXD047635 Dataset with its publication pending (from iProX)Dataset title: The acaricaidal mechanism of GC16Possible reference: He, Y. et al. (2022) The Insecticidal Efficacy and Physiological Action Mechanism of a Novel Agent GC16 against Tetranychus pueraricola (Acari: Tetranychidae)., Insects, PMID 35621769
PXD047631 no publication (from MassIVE)Dataset title: Heart proteomics of pathological atrial enlargement associated with atrial fibrillationPossible reference: Scholz, B. et al. (2019) HDAC (Histone Deacetylase) Inhibitor Valproic Acid Attenuates Atrial Remodeling and Delays the Onset of Atrial Fibrillation in Mice., Circ Arrhythm Electrophysiol, PMID 30879335
PXD047603 Dataset with its publication pending (from PRIDE)Dataset title: Overactive mitochondrial DNA replication disrupts perinatal cardiac maturationPossible reference: Landoni, JC. et al. (2024) Overactive mitochondrial DNA replication disrupts perinatal cardiac maturation., Nat Commun, PMID 39277581
PXD047594 Dataset with its publication pending (from PRIDE)Dataset title: FERONIA controls ABA-mediated seed germination via the regulation of the kinase activity of CARK1Possible reference: Wang, X. et al. (2024) FERONIA controls ABA-mediated seed germination via the regulation of CARK1 kinase activity., Cell Rep, PMID 39412988
PXD047591 Dataset with its publication pending (from iProX)Dataset title: SM1702 cold-adaptation proteomePossible reference: Xu, WY. et al. (2024) Increase of ATP synthesis and amino acids absorption contributes to cold adaptation in Antarctic bacterium Poseidonibacter antarcticus SM1702T., Extremophiles, PMID 39576362
PXD047583 Dataset with its publication pending (from PRIDE)Dataset title: Ubiquitin-specific proximity labeling for the identification of E3 ubiquitin ligase substratesPossible reference: Huang, HT. et al. (2024) Ubiquitin-specific proximity labeling for the identification of E3 ligase substrates., Nat Chem Biol, PMID 38514884
PXD047571 Dataset with its publication pending (from PRIDE)Dataset title: Insights from multi-omic modelling of neurodegeneration in Xeroderma Pigmentosum using an induced pluripotent stem cell systemPossible reference: Badja, C. et al. (2024) Insights from multi-omic modeling of neurodegeneration in xeroderma pigmentosum using an induced pluripotent stem cell system., Cell Rep, PMID 38805398
PXD047569 Dataset with its publication pending (from PRIDE)Dataset title: The PRC1 and PRC2 proximal interactomePossible reference: Zijlmans, DW. et al. (2025) PRC1 and PRC2 proximal interactome in mouse embryonic stem cells., Cell Rep, PMID 40053453
PXD047560 no publication (from MassIVE)Dataset title: Comparison of glioblastoma cell culture platforms based on transcriptional similarity with paired tissuePossible reference: Park, J. et al. (2024) Comparison of Glioblastoma Cell Culture Platforms Based on Transcriptional Similarity with Paired Tissue., Pharmaceuticals (Basel), PMID 38675489
PXD047537 Dataset with its publication pending (from PRIDE)Dataset title: Synthetically primed adaptation of Pseudomonas putida to a non-native substrate D-xylosePossible reference: Dvořák, P. et al. (2024) Synthetically-primed adaptation of Pseudomonas putida to a non-native substrate D-xylose., Nat Commun, PMID 38531855
PXD047518 Dataset with its publication pending (from iProX)Dataset title: Evolutionary Proteogenomic Landscape from Pre-invasive to Invasive Lung AdenocarcinomaPossible reference: Zhang, Y. et al. (2024) Evolutionary proteogenomic landscape from pre-invasive to invasive lung adenocarcinoma., Cell Rep Med, PMID 38183982
PXD047513 no publication (from MassIVE)Dataset title: Comparison of glycopeptide to released glycan abundances and the influence of glycopeptide charge state on N-linked glycosylation of IgG antibodiesPossible reference: Remoroza, CA. et al. (2024) Comparison of N-Glycopeptide to Released N-Glycan Abundances and the Influence of Glycopeptide Mass and Charge States on N-Linked Glycosylation of IgG Antibodies., J Proteome Res, PMID 38450643
PXD047500 Dataset with its publication pending (from PRIDE)Dataset title: Explorative study of stimulated saliva proteome in head and neck cancer patients pre-and post-treatmentPossible reference: Almhöjd, U. et al. (2024) Explorative study of stimulated saliva proteome in head and neck cancer patients pre- and post-treatment., Heliyon, PMID 39640734
PXD047492 Dataset with its publication pending (from iProX)Dataset title: The effect of semaglutide on high-fat diet-induced liver cancer in obese micePossible reference: Hansen, HH. et al. (2023) Semaglutide reduces tumor burden in the GAN diet-induced obese and biopsy-confirmed mouse model of NASH-HCC with advanced fibrosis., Sci Rep, PMID 38155202
PXD047466 Dataset with its publication pending (from PRIDE)Dataset title: Quantitative proteomics reveals oxygen-induced adaptations in Caldalkalibacillus thermarum TA2.A1 chemostat culturesPossible reference: de Jong, SI. et al. (2024) Quantitative proteomics reveals oxygen-induced adaptations in Caldalkalibacillus thermarum TA2.A1 microaerobic chemostat cultures., Front Microbiol, PMID 39529675
PXD047464 Dataset with its publication pending (from PRIDE)Dataset title: Bioactive decellularized extracellular matrix-based hydrogel supports human adipose tissue-derived stem cell maintenance and fibrocartilage phenotypePossible reference: Josino, R. et al. (2023) Bioactive decellularized extracellular matrix-based hydrogel supports human adipose tissue-derived stem cell maintenance and fibrocartilage phenotype., Front Bioeng Biotechnol, PMID 38260748
PXD047455 Dataset with its publication pending (from PRIDE)Dataset title: Ubiquitin-specific proximity labeling for the identification of E3 ubiquitin ligase substratesPossible reference: Huang, HT. et al. (2024) Ubiquitin-specific proximity labeling for the identification of E3 ligase substrates., Nat Chem Biol, PMID 38514884
PXD047433 Dataset with its publication pending (from iProX)Dataset title: The Proteome of chicken cecum inoculated with Salmonella enterica serovar EnteritidisPossible reference: Wang, Y. et al. (2025) Transcriptomic and proteomic analysis reveals the mechanism of chicken cecum response to Salmonella enterica serovar Enteritidis inoculation., iScience, PMID 39845417
PXD047419 Dataset with its publication pending (from PanoramaPublic)Dataset title: Decrypting lysine deacetylase inhibitor action and protein modifications by dose-resolved proteomicsPossible reference: Chang, YC. et al. (2024) Decrypting lysine deacetylase inhibitor action and protein modifications by dose-resolved proteomics., Cell Rep, PMID 38795348
PXD047412 Dataset with its publication pending (from PRIDE)Dataset title: A Spatiotemporal Proteomic Map of Human AdipogenesisPossible reference: Klingelhuber, F. et al. (2024) A spatiotemporal proteomic map of human adipogenesis., Nat Metab, PMID 38565923
PXD047403 Dataset with its publication pending (from jPOST)Dataset title: Bioinformatics-Guided Identification and Quantification of Biomarkers in Exposomic of Crotalus atrox Venom and its Neutralization by Antivenom Possible reference: Bala, AA. et al. (2025) Bioinformatics-Guided Identification and Quantification of Biomarkers of Crotalus atrox Envenoming and its Neutralization by Antivenom., Mol Cell Proteomics, PMID 40147718
PXD047364 Dataset with its publication pending (from iProX)Dataset title: Granzyme A can be modified by 4-OIPossible reference: Gong, W. et al. (2024) 4-Octyl itaconate blocks GSDMB-mediated pyroptosis and restricts inflammation by inactivating granzyme A., Cell Prolif, PMID 38982510
PXD047348 no publication (from MassIVE)Dataset title: Itaconate modulates immune responses via inhibition of peroxiredoxinsPossible reference: Paulenda, T. et al. (2025) Itaconate modulates immune responses via inhibition of peroxiredoxin 5., Nat Metab, PMID 40251412
PXD047339 Dataset with its publication pending (from PRIDE)Dataset title: A novel strategy to generate immunocytokines with activity-on-demand using small molecule inhibitorsPossible reference: Rotta, G. et al. (2024) A novel strategy to generate immunocytokines with activity-on-demand using small molecule inhibitors., EMBO Mol Med, PMID 38448543
PXD047337 Dataset with its publication pending (from PRIDE)Dataset title: ANDROGEN DRIVES MELANOMA INVASIVENESS AND METASTATIC SPREAD BY INDUCING TUMORIGENIC FUCOSYLATION: FucoproteomicsPossible reference: Liu, Q. et al. (2024) Androgen drives melanoma invasiveness and metastatic spread by inducing tumorigenic fucosylation., Nat Commun, PMID 38326303
PXD047314 Dataset with its publication pending (from iProX)Dataset title: Application of Label-Free Quantitative Proteomics in saliva of periodontitisPossible reference: Bostanci, N. et al. (2018) Targeted Proteomics Guided by Label-free Quantitative Proteome Analysis in Saliva Reveal Transition Signatures from Health to Periodontal Disease., Mol Cell Proteomics, PMID 29610270
PXD047283 Dataset with its publication pending (from jPOST)Dataset title: Subcutaneous white adipose tissue independently regulates burn-induced hypermetabolism via immune-adipose crosstalkPossible reference: Knuth, CM. et al. (2024) Subcutaneous white adipose tissue independently regulates burn-induced hypermetabolism via immune-adipose crosstalk., Cell Rep, PMID 38117653
PXD047271 Dataset with its publication pending (from PRIDE)Dataset title: Changes in FUS interactome in motor neurons upon ALS-related mutationPossible reference: Alirzayeva, H. et al. (2024) ALS-FUS mutations cause abnormal PARylation and histone H1.2 interaction, leading to pathological changes., Cell Rep, PMID 39167487
PXD047261 Dataset with its publication pending (from PRIDE)Dataset title: CLIPPER 2.0: Peptide level annotation and data analysis for positional proteomicsPossible reference: Kalogeropoulos, K. et al. (2024) CLIPPER 2.0: Peptide-Level Annotation and Data Analysis for Positional Proteomics., Mol Cell Proteomics, PMID 38703894
PXD047252 Dataset with its publication pending (from PRIDE)Dataset title: Tracing active members in microbial communities by BONCAT and click chemistry-based enrichment of newly synthesised proteinsPossible reference: Hellwig, P. et al. (2024) Tracing active members in microbial communities by BONCAT and click chemistry-based enrichment of newly synthesized proteins., ISME Commun, PMID 39736848
PXD047242 Dataset with its publication pending (from jPOST)Dataset title: Site-specific SUMOylation proteomics in ArabidopsisPossible reference: Sang, T. et al. (2024) Highly sensitive site-specific SUMOylation proteomics in Arabidopsis., Nat Plants, PMID 39294263
PXD047235 Bhosale SD, Moulder R, Suomi T, et al (2024) Serum proteomics of mother-infant dyads carrying HLA-conferred type 1 diabetes risk. iScience 110048. https://doi.org/https://doi.org/10.1016/j.isci.2024.110048 (from PanoramaPublic)Dataset title: Serum proteomics of mother-infant dyads carrying HLA-conferred type 1 diabetes riskPossible reference: Bhosale, SD. et al. (2024) Serum proteomics of mother-infant dyads carrying HLA-conferred type 1 diabetes risk., iScience, PMID 38883825
PXD047226 Dataset with its publication pending (from PRIDE)Dataset title: VAP spatially stabilizes dendritic mitochondria to locally support synaptic plasticityPossible reference: Bapat, O. et al. (2024) VAP spatially stabilizes dendritic mitochondria to locally support synaptic plasticity., Nat Commun, PMID 38177103
PXD047183 Dataset with its publication pending (from PRIDE)Dataset title: A noncanonical role of roX RNAs in autosomal epigenetic repressionPossible reference: Li, J. et al. (2025) A noncanonical role of roX RNAs in autosomal epigenetic repression., Nat Commun, PMID 39747148
PXD047173 Dataset with its publication pending (from PRIDE)Dataset title: An inhibitory segment within G-patch activators tunes Prp43-ATPase activity during ribosome assemblyPossible reference: Portugal-Calisto, D. et al. (2024) An inhibitory segment within G-patch activators tunes Prp43-ATPase activity during ribosome assembly., Nat Commun, PMID 39578461
PXD047170 Dataset with its publication pending (from jPOST)Dataset title: Site-specific SUMOylation proteomics in ArabidopsisPossible reference: Sang, T. et al. (2024) Highly sensitive site-specific SUMOylation proteomics in Arabidopsis., Nat Plants, PMID 39294263
PXD047167 Dataset with its publication pending (from PRIDE)Dataset title: A single gene mutation underpins metabolic adaptation and acquisition of filamentous competence in the emerging fungal pathogen Candida aurisPossible reference: Deng, Y. et al. (2024) A single gene mutation underpins metabolic adaptation and acquisition of filamentous competence in the emerging fungal pathogen Candida auris., PLoS Pathog, PMID 38976759
PXD047155 Dataset with its publication pending (from jPOST)Dataset title: Proteomics of hepatocyte like cells differentiated from iPS cellsPossible reference: Woo, DH. et al. (2012) Direct and indirect contribution of human embryonic stem cell-derived hepatocyte-like cells to liver repair in mice., Gastroenterology, PMID 22138358
PXD047144 no publication (from MassIVE)Dataset title: Hepatic SerpinA1 Improves Energy and Glucose Metabolism through Regulation of Preadipocyte Proliferation and UCP1 ExpressionPossible reference: Okagawa, S. et al. (2024) Hepatic SerpinA1 improves energy and glucose metabolism through regulation of preadipocyte proliferation and UCP1 expression., Nat Commun, PMID 39532838
PXD047124 Dataset with its publication pending (from PRIDE)Dataset title: Post-translational regulation of photosynthetic activity via the TOR kinase in plants.Possible reference: D'Alessandro, S. et al. (2024) Posttranslational regulation of photosynthetic activity via the TOR kinase in plants., Sci Adv, PMID 38896607
PXD047112 Dataset with its publication pending (from PRIDE)Dataset title: A complex of the lipid transport ER proteins TMEM24 and C2CD2 with band 4.1 at cell-cell contacts.Possible reference: Johnson, B. et al. (2023) A complex of the lipid transport ER proteins TMEM24 and C2CD2 with band 4.1 at cell-cell contacts., bioRxiv, PMID 38106008
PXD047109 Dataset with its publication pending (from PRIDE)Dataset title: Exploring the secretome of Corynebacterium glutamicum ATCC 13032Possible reference: Balasubramanian, S. et al. (2024) Exploring the secretome of Corynebacterium glutamicum ATCC 13032., Front Bioeng Biotechnol, PMID 38415189
PXD047097 Dataset with its publication pending (from PRIDE)Dataset title: The long-chain flavodoxin FldX1 improves the biodegradation of 4-hydroxyphenylacetate and 3-hydroxyphenylacetate and counteracts the oxidative stress associated to aromatic catabolism in Paraburkholderia xenovoransPossible reference: Rodríguez-Castro, L. et al. (2024) The long-chain flavodoxin FldX1 improves the biodegradation of 4-hydroxyphenylacetate and 3-hydroxyphenylacetate and counteracts the oxidative stress associated to aromatic catabolism in Paraburkholderia xenovorans., Biol Res, PMID 38561836
PXD047087 Dataset with its publication pending (from jPOST)Dataset title: Comprehensive identification of Ubiquitin-like 3 (UBL3)-interacting proteins in mouse brainPossible reference: Ageta, H. et al. (2024) Comprehensive identification of ubiquitin-like 3 (UBL3)-interacting proteins in the mouse brain., Mol Brain, PMID 39148092
PXD047045 Dataset with its publication pending (from PRIDE)Dataset title: Novel brain-penetrant inhibitor of G9a methylase blocks Alzheimer’s disease proteopathology for precision medicationPossible reference: Xie, L. et al. (2023) Novel brain-penetrant inhibitor of G9a methylase blocks Alzheimer's disease proteopathology for precision medication., medRxiv, PMID 37961307
PXD047042 no publication (from MassIVE)Dataset title: In vivo mapping of protein-protein interactions of schizophrenia risk factors generates an interconnected disease network.Possible reference: McClatchy, DB. et al. (2023) In vivo mapping of protein-protein interactions of schizophrenia risk factors generates an interconnected disease network., bioRxiv, PMID 38168169
PXD047034 no publication (from MassIVE)Dataset title: Calorie restriction and rapamycin distinctly restore non-canonical ORF translation in the muscles of aging micePossible reference: Mittal, N. et al. (2024) Calorie restriction and rapamycin distinctly restore non-canonical ORF translation in the muscles of aging mice., NPJ Regen Med, PMID 39300171
PXD047029 Dataset with its publication pending (from PRIDE)Dataset title: Targeted mass spectrometry analyses of somatic mutations in colorectal cancer specimens using differential ion mobilityPossible reference: Wu, Z. et al. (2024) Targeted Mass Spectrometry Analyses of Somatic Mutations in Colorectal Cancer Specimens Using Differential Ion Mobility., J Proteome Res, PMID 38153093
PXD047024 Dataset with its publication pending (from PRIDE)Dataset title: An Immunological Synapse Formation Between T Regulatory Cells and Cancer-Associated Fibroblasts Promotes Tumour DevelopmentPossible reference: Varveri, A. et al. (2024) Immunological synapse formation between T regulatory cells and cancer-associated fibroblasts promotes tumour development., Nat Commun, PMID 38862534
PXD047022 Dataset with its publication pending (from PRIDE)Dataset title: A common gene signature of the right ventricle in failing rat and human heartsPossible reference: Deshpande, A. et al. (2021) SH3-Binding Glutamic Acid Rich-Deficiency Augments Apoptosis in Neonatal Rat Cardiomyocytes., Int J Mol Sci, PMID 34681711
PXD047019 Dataset with its publication pending (from PRIDE)Dataset title: RNF212B E3 ligase is essential for crossing over maturation and mouse fertilityPossible reference: Condezo, YB. et al. (2024) RNF212B E3 ligase is essential for crossover designation and maturation during male and female meiosis in the mouse., Proc Natl Acad Sci U S A, PMID 38865271
PXD047009 Dataset with its publication pending (from PRIDE)Dataset title: Exosomes define a local and systemic communication network in healthy pancreas and in pancreatic ductal adenocarcinomaPossible reference: Adem, B. et al. (2024) Exosomes define a local and systemic communication network in healthy pancreas and pancreatic ductal adenocarcinoma., Nat Commun, PMID 38383468
PXD046999 Dataset with its publication pending (from PRIDE)Dataset title: Spatial characterization and stratification of colorectal adenomas by Deep Visual ProteomicsPossible reference: Kabatnik, S. et al. (2024) Spatial characterization and stratification of colorectal adenomas by deep visual proteomics., iScience, PMID 39252972
PXD046976 Dataset with its publication pending (from PRIDE)Dataset title: Differential contributions of interferon classes to driving host inflammatory responses and restricting virus progeny productionPossible reference: Lum, KK. et al. (2024) Differential Contributions of Interferon Classes to Host Inflammatory Responses and Restricting Virus Progeny Production., J Proteome Res, PMID 38564653
PXD046971 Dataset with its publication pending (from PRIDE)Dataset title: Phosphorylation regulates viral biomolecular condensates to promote infectious progeny productionPossible reference: Grams, N. et al. (2024) Phosphorylation regulates viral biomolecular condensates to promote infectious progeny production., EMBO J, PMID 38177504
PXD046963 Dataset with its publication pending (from PRIDE)Dataset title: KDM5-mediated transcriptional activation of ribosomal protein genes alters translation efficiency to regulate mitochondrial metabolismPossible reference: Yheskel, M. et al. (2024) KDM5-mediated transcriptional activation of ribosomal protein genes alters translation efficiency to regulate mitochondrial metabolism in neurons., Nucleic Acids Res, PMID 38597673
PXD046959 no publication (from MassIVE)Dataset title: Illuminating phenotypic drug responses of sarcoma cells to kinase inhibitors by phosphoproteomics-2Possible reference: Lee, CY. et al. (2024) Illuminating phenotypic drug responses of sarcoma cells to kinase inhibitors by phosphoproteomics., Mol Syst Biol, PMID 38177929
PXD046955 Dataset with its publication pending (from PRIDE)Dataset title: Human SKI component SKIV2L regulates telomeric DNA-RNA hybrids and prevents telomere fragilityPossible reference: Herrera-Moyano, E. et al. (2024) Human SKI component SKIV2L regulates telomeric DNA-RNA hybrids and prevents telomere fragility., iScience, PMID 39493885
PXD046941 Dataset with its publication pending (from PRIDE)Dataset title: Landscape of protein-protein-interactions during hepatitis C virus assembly and releasePossible reference: Matthaei, A. et al. (2024) Landscape of protein-protein interactions during hepatitis C virus assembly and release., Microbiol Spectr, PMID 38230952
PXD046926 Dataset with its publication pending (from PRIDE)Dataset title: Cryo-EM structure of the extracellular domain of murine Thrombopoietin Receptor in complex with Thrombopoietin.Possible reference: Sarson-Lawrence, KTG. et al. (2024) Cryo-EM structure of the extracellular domain of murine Thrombopoietin Receptor in complex with Thrombopoietin., Nat Commun, PMID 38326297
PXD046925 no publication (from MassIVE)Dataset title: Cross-talks between Metabolic and Translational Controls during Beige Adipocyte DifferentiationPossible reference: Youn, D. et al. (2025) Cross-talks between Metabolic and Translational Controls during Beige Adipocyte Differentiation., Nat Commun, PMID 40204764
PXD046907 Dataset with its publication pending (from jPOST)Dataset title: Acute exposure to ultraviolet radiation targets proteins involved in collagen fibrillogenesisPossible reference: Platt, CI. et al. (2024) Acute exposure to ultraviolet radiation targets proteins involved in collagen fibrillogenesis., Front Physiol, PMID 38559576
PXD046904 Dataset with its publication pending (from PRIDE)Dataset title: MeCP2 Represses the Activity of Topoisomerase IIβ in Long Neuronal GenesPossible reference: Nettles, SA. et al. (2023) MeCP2 represses the activity of topoisomerase IIβ in long neuronal genes., Cell Rep, PMID 38096051
PXD046903 Dataset with its publication pending (from PRIDE)Dataset title: Mass Spectrometry Methods and Mathematical PK/PD Model for Decision Tree-Guided Covalent Drug DevelopmentPossible reference: Hossain, MA. et al. (2025) Mass spectrometry methods and mathematical PK/PD model for decision tree-guided covalent drug development., Nat Commun, PMID 39971904
PXD046869 no publication (from MassIVE)Dataset title: Organelle proteomic profiling reveals lysosomal heterogeneity in association with longevityPossible reference: Yu, Y. et al. (2024) Organelle proteomic profiling reveals lysosomal heterogeneity in association with longevity., Elife, PMID 38240316
PXD046866 Rocio Prisby, Alessandra Luchini, Lance A. Liotta, Caroline Solazzo. Wheat-based glues in conservation and cultural heritage: (dis)solving the proteome of flour and starch pastes and their adhering properties. https://doi.org/10.1021/acs.jproteome.3c00804 (from MassIVE)Dataset title: Wheat-based glues in conservation and cultural heritage: (dis)solving the proteome of flour and starch pastes and their adhering properties Possible reference: Prisby, R. et al. (2024) Wheat-Based Glues in Conservation and Cultural Heritage: (Dis)solving the Proteome of Flour and Starch Pastes and Their Adhering Properties., J Proteome Res, PMID 38574199
PXD046826 no publication (from MassIVE)Dataset title: Multiomics characterization of a less invasive microfluidic-based cell sorting techniquePossible reference: Choudhury, FK. et al. (2024) Multiomics Characterization of a Less Invasive Microfluidic-Based Cell Sorting Technique., J Proteome Res, PMID 38417049
PXD046802 Dataset with its publication pending (from PRIDE)Dataset title: DIA-based phosphoproteomics identifies early phosphorylation events in response to EGTA and mannitol in ArabidopsisPossible reference: Sang, T. et al. (2024) DIA-Based Phosphoproteomics Identifies Early Phosphorylation Events in Response to EGTA and Mannitol in Arabidopsis., Mol Cell Proteomics, PMID 38901673
PXD046800 Dataset with its publication pending (from iProX)Dataset title: Lactylome and Proteome of Human Hypertrophic Scar TissuesPossible reference: Zhang, E. et al. (2024) Integrative Analysis of Lactylome and Proteome of Hypertrophic Scar To Identify Pathways or Proteins Associated with Disease Development., J Proteome Res, PMID 39012622
PXD046793 Dataset with its publication pending (from PRIDE)Dataset title: LPS-Stimulated Mouse Macrophage RNA Binding Protein Domain Enrichment and AnalysisPossible reference: Li, Y. et al. (2024) Fibroblastic reticular cell-derived exosomes are a promising therapeutic approach for septic acute kidney injury., Kidney Int, PMID 38163633
PXD046790 no publication (from MassIVE)Dataset title: Mitochondrial ribosomal protein L12 (MRPL12) post-translational modificationsPossible reference: Ji, X. et al. (2023) CUL3 induces mitochondrial dysfunction via MRPL12 ubiquitination in renal tubular epithelial cells., FEBS J, PMID 37526061
PXD046762 Dataset with its publication pending (from iProX)Dataset title: Proteomic and Phosphoproteomic of Cipangopaludina chinensisPossible reference: Liu, G. et al. (2024) Proteomics and phosphoproteomics reveal novel proteins involved in Cipangopaludina chinensis carcasses., Front Chem, PMID 39268005
PXD046759 Dataset with its publication pending (from PRIDE)Dataset title: Role of the Yersinia pestis Phospholipase D (Ymt) in the Initial Aggregation Step of Biofilm Formation in the FleaPossible reference: Jarrett, CO. et al. (2024) Role of the Yersinia pestis phospholipase D (Ymt) in the initial aggregation step of biofilm formation in the flea., mBio, PMID 38722159
PXD046748 Dataset with its publication pending (from PRIDE)Dataset title: Histone modification profile of Pristionchus pacificusPossible reference: Werner, MS. et al. (2018) Young genes have distinct gene structure, epigenetic profiles, and transcriptional regulation., Genome Res, PMID 30232198
PXD046738 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic profiling comparison for plasma from patients with acute ischemic stroke under rt-PA treatmentPossible reference: Bateman, RM. et al. (2016) 36th International Symposium on Intensive Care and Emergency Medicine : Brussels, Belgium. 15-18 March 2016., Crit Care, PMID 27885969
PXD046735 Dataset with its publication pending (from PRIDE)Dataset title: 2-dimensional thermal proteome profiling of HZ052Possible reference: Zailatul, HM. et al. (2015) Malaysian cockle (Anadara granosa) allergy: Identification of IgE-binding proteins and effects of different cooking methods., Trop Biomed, PMID 26691261
PXD046721 no publication (from MassIVE)Dataset title: The ALPHA Phase 1 Study: Pulmonary ArteriaL Hypertension Treated with CardiosPHere-Derived Allogeneic Stem CellsPossible reference: Lewis, MI. et al. (2024) The ALPHA phase 1 study: pulmonary ArteriaL hypertension treated with CardiosPHere-Derived allogeneic stem cells., EBioMedicine, PMID 38092579
PXD046716 Dataset with its publication pending (from iProX)Dataset title: Local Delivery of Dual Stem Cell-derived Exosomes using an Electrospun Nanofibrous Platform for the Treatment of Traumatic Brain InjuryPossible reference: Li, J. et al. (2024) Local Delivery of Dual Stem Cell-Derived Exosomes Using an Electrospun Nanofibrous Platform for the Treatment of Traumatic Brain Injury., ACS Appl Mater Interfaces, PMID 38980910
PXD046701 Dataset with its publication pending (from PRIDE)Dataset title: Insights from multi-omic modelling of neurodegeneration in Xeroderma Pigmentosum using an induced pluripotent stem cell systemPossible reference: Badja, C. et al. (2024) Insights from multi-omic modeling of neurodegeneration in xeroderma pigmentosum using an induced pluripotent stem cell system., Cell Rep, PMID 38805398
PXD046689 Dataset with its publication pending (from iProX)Dataset title: MANF facilitates breast cancer cell survival under glucose starvation via PRKN-mediated mitophagy regulationPossible reference: Xiong, Z. et al. (2025) MANF facilitates breast cancer cell survival under glucose-starvation conditions via PRKN-mediated mitophagy regulation., Autophagy, PMID 39147386
PXD046687 Dataset with its publication pending (from iProX)Dataset title: Expression of stress responsive genes enables Limosilactobacillus reuteriPossible reference: Josephs-Spaulding, J. et al. (2024) Reconstructing the transcriptional regulatory network of probiotic L. reuteri is enabled by transcriptomics and machine learning., mSystems, PMID 38349131
PXD046683 Dataset with its publication pending (from iProX)Dataset title: Comparative proteomics and N-glycoproteomics reveal the effects of different plasma protein enrichment technologiesPossible reference: Tian, H. et al. (2025) Comparative Proteomics and N-Glycoproteomics Reveal the Effects of Different Plasma Protein Enrichment Technologies., J Proteome Res, PMID 39668702
PXD046680 Dataset with its publication pending (from iProX)Dataset title: Mapping start codons of small open reading frames by N-terminomics approachPossible reference: Peng, M. et al. (2024) Mapping Start Codons of Small Open Reading Frames by N-Terminomics Approach., Mol Cell Proteomics, PMID 39419446
PXD046676 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic profiling comparison for plasma from patients with acute ischemic stroke under rt-PA treatmentPossible reference: Bateman, RM. et al. (2016) 36th International Symposium on Intensive Care and Emergency Medicine : Brussels, Belgium. 15-18 March 2016., Crit Care, PMID 27885969
PXD046668 no publication (from MassIVE)Dataset title: A mammalian-specific Alex3/Galphaq protein complex regulating mitochondrial dynamics, dendritic complexity, and neuronal survivalPossible reference: Izquierdo-Villalba, I. et al. (2024) A mammalian-specific Alex3/Gαq protein complex regulates mitochondrial trafficking, dendritic complexity, and neuronal survival., Sci Signal, PMID 38320000
PXD046662 Dataset with its publication pending (from PRIDE)Dataset title: Chloroquine Target Identification with MS-CETSAPossible reference: Gao, P. et al. (2022) Identification of antimalarial targets of chloroquine by a combined deconvolution strategy of ABPP and MS-CETSA., Mil Med Res, PMID 35698214
PXD046646 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic Landscape of Endoplasmic Reticulum Remodeling During Neurogenesis via Combinatorial Selective ER-phagyPossible reference: Hoyer, MJ. et al. (2023) Combinatorial selective ER-phagy remodels the ER during neurogenesis., bioRxiv, PMID 37425907
PXD046642 Dataset with its publication pending (from PRIDE)Dataset title: MK4815 Target Identification with MS-CETSAPossible reference: Wirjanata, G. et al. (2024) Identification of an inhibitory pocket in falcilysin provides a new avenue for malaria drug development., Cell Chem Biol, PMID 38593807
PXD046638 Dataset with its publication pending (from PRIDE)Dataset title: Combining metabolic flux analysis with proteomics to shed light on the metabolic flexibility: the case of Desulfovibrio vulgaris HildenboroughPossible reference: Marbehan, X. et al. (2024) Combining metabolic flux analysis with proteomics to shed light on the metabolic flexibility: the case of Desulfovibrio vulgaris Hildenborough., Front Microbiol, PMID 38463485
PXD046637 Dataset with its publication pending (from PRIDE)Dataset title: Proteogenomic Characterization Reveals Tumorigenesis and Progression of Lung Adenocarcinoma Manifested as Subsolid NodulesPossible reference: Su, H. et al. (2025) Proteogenomic characterization reveals tumorigenesis and progression of lung cancer manifested as subsolid nodules., Nat Commun, PMID 40069142
PXD046597 no publication (from MassIVE)Dataset title: Itaconate modulates immune responses via inhibition of peroxiredoxin 5Possible reference: Paulenda, T. et al. (2025) Itaconate modulates immune responses via inhibition of peroxiredoxin 5., Nat Metab, PMID 40251412
PXD046596 Dataset with its publication pending (from PRIDE)Dataset title: Spatial proteomics of skeletal muscle using thin cryosections reveals metabolic adaption at the muscle-tendon transition zonePossible reference: Schmidt, L. et al. (2024) Spatial proteomics of skeletal muscle using thin cryosections reveals metabolic adaptation at the muscle-tendon transition zone., Cell Rep, PMID 38900641
PXD046590 no publication (from MassIVE)Dataset title: Human Keratinocyte Responses to WoodsmokePossible reference: Lin, LW. et al. (2021) Woodsmoke Extracts Cross-Link Proteins and Induce Cornified Envelope Formation without Stimulating Keratinocyte Terminal Differentiation., Toxicol Sci, PMID 34086961
PXD046575 Dataset with its publication pending (from PRIDE)Dataset title: MMV665806 Target Identification with MS-CETSAPossible reference: Wirjanata, G. et al. (2024) Identification of an inhibitory pocket in falcilysin provides a new avenue for malaria drug development., Cell Chem Biol, PMID 38593807
PXD046571 Dataset with its publication pending (from PRIDE)Dataset title: Analysis of the ubiquitin-modified proteome identifies novel host determinants of Kaposi’s sarcoma herpesvirus lytic reactivationPossible reference: Causey, A. et al. (2025) Analysis of the ubiquitin-modified proteome identifies novel host factors in Kaposi's sarcoma herpesvirus lytic reactivation., J Virol, PMID 39636148
PXD046569 Dataset with its publication pending (from jPOST)Dataset title: Proteomic profiling of extracellular vesicles of the Lactiplantibacillus plantarum strainsPossible reference: Chernova, OA. et al. (2024) Structure of Extracellular Vesicles and Their Effect on Bacterial Biofilms Change with the Development of Antibiotic Resistance in the Probiotic Strain Lactiplantibacillus plantarum 8p-a3., Dokl Biol Sci, PMID 39400899
PXD046567 Dataset with its publication pending (from iProX)Dataset title: Spatial-resolution functional proteomic profiling analysis of colorectal cancerPossible reference: Herold, N. et al. (2024) High-dimensional in situ proteomics imaging to assess γδ T cells in spatial biology., J Leukoc Biol, PMID 38285597
PXD046538 Dataset with its publication pending (from PRIDE)Dataset title: MMV000848 Target Identification with MS-CETSAPossible reference: Wirjanata, G. et al. (2024) Identification of an inhibitory pocket in falcilysin provides a new avenue for malaria drug development., Cell Chem Biol, PMID 38593807
PXD046505 Dataset with its publication pending (from PRIDE)Dataset title: PLD3 and PLD4 synthesize lysosomal S,S-BMPPossible reference: Singh, S. et al. (2024) PLD3 and PLD4 synthesize S,S-BMP, a key phospholipid enabling lipid degradation in lysosomes., bioRxiv, PMID 38562702
PXD046498 Dataset with its publication pending (from PRIDE)Dataset title: Proteomics of P granules Z granules and Mutator foci in C.elegansPossible reference: Suen, KM. et al. (2023) Expansion microscopy reveals subdomains in C. elegans germ granules., Life Sci Alliance, PMID 36750365
PXD046487 Dataset with its publication pending (from iProX)Dataset title: Jilin white goose testis proteomics.Possible reference: Song, Y. et al. (2024) Protein profile analysis of Jilin white goose testicles at different stages of the laying cycle by DIA strategy., BMC Genomics, PMID 38561689
PXD046457 Dataset with its publication pending (from PRIDE)Dataset title: A SIRT7-dependent acetylation switch regulates early B-cell differentiation and lineage commitment through PAX5Possible reference: Gamez-Garcia, A. et al. (2024) A SIRT7-dependent acetylation switch regulates early B cell differentiation and lineage commitment through Pax5., Nat Immunol, PMID 39424985
PXD046445 Dataset with its publication pending (from PRIDE)Dataset title: (N)1-methylpseudouridylation of mRNA causes +1 ribosomal frameshiftingPossible reference: Mulroney, TE. et al. (2024) N1-methylpseudouridylation of mRNA causes +1 ribosomal frameshifting., Nature, PMID 38057663
PXD046431 no publication (from MassIVE)Dataset title: Recruitment of FBXO22 for Targeted Degradation of NSD2Possible reference: Nie, DY. et al. (2023) Recruitment of FBXO22 for Targeted Degradation of NSD2., bioRxiv, PMID 37961297
PXD046414 Dataset with its publication pending (from PRIDE)Dataset title: Leveraging a self-cleaving peptide for tailored control in proximity labeling proteomicsPossible reference: Delhaye, L. et al. (2024) Leveraging a self-cleaving peptide for tailored control in proximity labeling proteomics., Cell Rep Methods, PMID 38986614
PXD046413 Dataset with its publication pending (from PRIDE)Dataset title: Leveraging a self-cleaving peptide for tailored control in proximity labeling proteomicsPossible reference: Delhaye, L. et al. (2024) Leveraging a self-cleaving peptide for tailored control in proximity labeling proteomics., Cell Rep Methods, PMID 38986614
PXD046412 Dataset with its publication pending (from PRIDE)Dataset title: Leveraging a self-cleaving peptide for tailored control in proximity labeling proteomicsPossible reference: Delhaye, L. et al. (2024) Leveraging a self-cleaving peptide for tailored control in proximity labeling proteomics., Cell Rep Methods, PMID 38986614
PXD046411 no publication (from MassIVE)Dataset title: Mapping the immunopeptidome of several SARS-CoV-2 antigens across common HLA haplotypesPossible reference: Braun, A. et al. (2024) Mapping the immunopeptidome of seven SARS-CoV-2 antigens across common HLA haplotypes., Nat Commun, PMID 39214998
PXD046409 Dataset with its publication pending (from iProX)Dataset title: Integrated transcriptomics, proteomics and functional analysis to characterize the tissue-specific small extracellular vesicle network of breast cancerPossible reference: Shen, L. et al. (2023) Integrated transcriptomics, proteomics, and functional analysis to characterize the tissue-specific small extracellular vesicle network of breast cancer., MedComm (2020), PMID 38053815
PXD046408 Dataset with its publication pending (from iProX)Dataset title: Multi-omic Analyses Identified a Novel Biomarker in Abnormal Uterine Bleeding with Ovulatory DysfunctionPossible reference: Zhao, Y. et al. (2024) Multi-omic analyses identified SFRP4 as a novel biomarker in abnormal uterine bleeding with ovulatory dysfunction., Heliyon, PMID 39286067
PXD046405 Dataset with its publication pending (from PRIDE)Dataset title: Position-specific N- and O-glycosylation of the reactive centre loop impacts neutrophil elastase-mediated proteolysis of corticosteroid-binding globulinPossible reference: Chernykh, A. et al. (2024) Position-specific N- and O-glycosylation of the reactive center loop impacts neutrophil elastase-mediated proteolysis of corticosteroid-binding globulin., J Biol Chem, PMID 38042488
PXD046404 Dataset with its publication pending (from iProX)Dataset title: In-depth Profiling of 4-hydroxy-2-nonenal Modification via Reversible Thiazolidine ChemistryPossible reference: Wang, J. et al. (2024) In-Depth Profiling of 4-Hydroxy-2-nonenal Modification via Reversible Thiazolidine Chemistry., Anal Chem, PMID 38502245
PXD046385 Dataset with its publication pending (from PRIDE)Dataset title: Ribosomal Protein SA (RPSA) is required for localized translation and sarcomere maintenancePossible reference: Haddad, R. et al. (2024) Localized translation and sarcomere maintenance requires ribosomal protein SA in mice., J Clin Invest, PMID 38743494
PXD046382 Dataset with its publication pending (from PRIDE)Dataset title: Cross-link assisted spatial proteomics to map sub-organelle proteomes and membrane protein topologyPossible reference: Zhu, Y. et al. (2024) Cross-link assisted spatial proteomics to map sub-organelle proteomes and membrane protein topologies., Nat Commun, PMID 38632225
PXD046380 Dataset with its publication pending (from PRIDE)Dataset title: Nucleolar stress caused by arginine-rich peptides triggers a ribosomopathy and accelerates ageing in micePossible reference: Sirozh, O. et al. (2024) Nucleolar stress caused by arginine-rich peptides triggers a ribosomopathy and accelerates aging in mice., Mol Cell, PMID 38521064
PXD046358 Dataset with its publication pending (from PRIDE)Dataset title: The virulence regulator VirB from Shigella flexneri uses a CTPdependent switch mechanism to activate gene expressionPossible reference: Jakob, S. et al. (2024) The virulence regulator VirB from Shigella flexneri uses a CTP-dependent switch mechanism to activate gene expression., Nat Commun, PMID 38182620
PXD046355 Dataset with its publication pending (from PRIDE)Dataset title: Bile proteome reveals biliary regeneration during normothermic preservation of human donor liversPossible reference: Thorne, AM. et al. (2023) Bile proteome reveals biliary regeneration during normothermic preservation of human donor livers., Nat Commun, PMID 38036513
PXD046344 Dataset with its publication pending (from iProX)Dataset title: SLC4A7 suppresses the oncogenesis of lung adenocarcinoma by reducing lactate transport and protein lactylationPossible reference: Yan, H. et al. (2025) SLC4A7 suppresses lung adenocarcinoma oncogenesis by reducing lactate transport and protein lactylation., Int J Oncol, PMID 40084702
PXD046335 Dataset with its publication pending (from PRIDE)Dataset title: The fatty liver disease-causing protein PNPLA3-I148M alters lipid droplet-Golgi dynamicsPossible reference: Sherman, DJ. et al. (2023) The fatty liver disease-causing protein PNPLA3-I148M alters lipid droplet-Golgi dynamics., bioRxiv, PMID 37873239
PXD046333 Dataset with its publication pending (from PRIDE)Dataset title: Remodeling of the gastric environment in Helicobacter pylori-induced atrophic gastritisPossible reference: Shuman, JHB. et al. (2024) Remodeling of the gastric environment in Helicobacter pylori-induced atrophic gastritis., mSystems, PMID 38059647
PXD046297 Dataset with its publication pending (from iProX)Dataset title: BIN2 Inhibition Suppress Cancer Progression and Protect Ovarian function through Downregulating HDAC1 PhosphorylationPossible reference: Li, CR. et al. (2024) BIN2 inhibition suppress ovarian cancer progression meanwhile protect ovarian function through downregulating HDAC1 and RPS6 phosphorylation respectively., Clin Transl Med, PMID 39412213
PXD046294 Dataset with its publication pending (from iProX)Dataset title: Protein expression signature in cell competition in HCCPossible reference: Zhang, HY. et al. (2024) A prognostic four-gene signature and a therapeutic strategy for hepatocellular carcinoma: Construction and analysis of a circRNA-mediated competing endogenous RNA network., Hepatobiliary Pancreat Dis Int, PMID 37407412
PXD046282 Dataset with its publication pending (from jPOST)Dataset title: Cell cycle-dependent gene networks for cell proliferation activated by nuclear CK2 complexes Possible reference: Homma, MK. et al. (2024) Cell cycle-dependent gene networks for cell proliferation activated by nuclear CK2α complexes., Life Sci Alliance, PMID 37907238
PXD046277 Dataset with its publication pending (from PRIDE)Dataset title: Pharmacological Targeting of Casein Kinase 1δ Suppresses Oncogenic NRAS-Driven MelanomaPossible reference: Wen, Y. et al. (2024) Pharmacological targeting of casein kinase 1δ suppresses oncogenic NRAS-driven melanoma., Nat Commun, PMID 39572526
PXD046264 Dataset with its publication pending (from PRIDE)Dataset title: Proteolysis Targeting Chimeras With Reduced Off-targetsPossible reference: Nguyen, TM. et al. (2024) Proteolysis-targeting chimeras with reduced off-targets., Nat Chem, PMID 38110475
PXD046263 Dataset with its publication pending (from PRIDE)Dataset title: Repression of pattern-triggered immunity by the hypoxia response programPossible reference: Mooney, BC. et al. (2024) Hypoxia represses pattern-triggered immune responses in Arabidopsis., Plant Physiol, PMID 39158089
PXD046260 Dataset with its publication pending (from PRIDE)Dataset title: Predicting the efficacy of glucocorticoids in pediatric primary immune thrombocytopenia using plasma proteomicsPossible reference: Cao, Q. et al. (2023) Predicting the efficacy of glucocorticoids in pediatric primary immune thrombocytopenia using plasma proteomics., Front Immunol, PMID 38162645
PXD046256 Dataset with its publication pending (from PRIDE)Dataset title: Global, neuronal, and beta-cell specific deletion of the insulin inhibitory receptor (inceptor) improves glucose homeostasis in diet-induced obese male micePossible reference: Grandl, G. et al. (2024) Global, neuronal or β cell-specific deletion of inceptor improves glucose homeostasis in male mice with diet-induced obesity., Nat Metab, PMID 38418586
PXD046243 Dataset with its publication pending (from PRIDE)Dataset title: A synthetically methylotrophic Escherichia coli as a chassis for bioproductionPossible reference: Reiter, MA. et al. (2024) A synthetic methylotrophic Escherichia coli as a chassis for bioproduction from methanol., Nat Catal, PMID 38828428
PXD046240 no publication (from MassIVE)Dataset title: Shotgun proteomics of thyroid carcinoma exosomes: insight into the role of exosomal proteins in carcinogenesis and thyroid homeostasisPossible reference: Surman, M. et al. (2024) Shotgun proteomics of thyroid carcinoma exosomes - Insight into the role of exosomal proteins in carcinogenesis and thyroid homeostasis., Biochim Biophys Acta Gen Subj, PMID 39025337
PXD046238 Dataset with its publication pending (from PRIDE)Dataset title: Defining the cardiac fibroblast secretomePossible reference: Tseliou, E. et al. (2015) Fibroblasts Rendered Antifibrotic, Antiapoptotic, and Angiogenic by Priming With Cardiosphere-Derived Extracellular Membrane Vesicles., J Am Coll Cardiol, PMID 26248985
PXD046237 Dataset with its publication pending (from PRIDE)Dataset title: Benchmarking and integrating human B-cell receptor genomic and antibody proteomic profilingPossible reference: Lê Quý, K. et al. (2024) Benchmarking and integrating human B-cell receptor genomic and antibody proteomic profiling., NPJ Syst Biol Appl, PMID 38997321
PXD046229 no publication (from MassIVE)Dataset title: Fully defined NGN2 neuron protocol reveals diverse signatures of neuronal maturation Possible reference: Shan, X. et al. (2024) Fully defined NGN2 neuron protocol reveals diverse signatures of neuronal maturation., Cell Rep Methods, PMID 39255791
PXD046219 Dataset with its publication pending (from PRIDE)Dataset title: Differential Protein Expression and Metabolite Profiling in Glaucoma: Insights from a Multi-Omics AnalysisPossible reference: Mok, JH. et al. (2024) Differential protein expression and metabolite profiling in glaucoma: Insights from a multi-omics analysis., Biofactors, PMID 38818964
PXD046218 Dataset with its publication pending (from jPOST)Dataset title: Phosphoproteomics analysis of serum from dogs affected with pulmonary hypertension secondary to degenerative mitral valve diseasePossible reference: Sakarin, S. et al. (2024) Phosphoproteomics analysis of serum from dogs affected with pulmonary hypertension secondary to degenerative mitral valve disease., PeerJ, PMID 38708342
PXD046200 no publication (from MassIVE)Dataset title: Signatures of Cysteine Oxidation on Structural and Contractile Proteins Are Associated with Physical Performance and Muscle Function in Older AdultsPossible reference: Day, NJ. et al. (2023) Signatures of Cysteine Oxidation on Muscle Structural and Contractile Proteins Are Associated with Physical Performance and Muscle Function in Older Adults: Study of Muscle, Mobility and Aging (SOMMA)., medRxiv, PMID 37986748
PXD046198 Dataset with its publication pending (from iProX)Dataset title: hnRNPA1 SUMOylation promotes cold hypersensitivity in chronic inflammatory pain by stabilizing TRPA1 mRNAPossible reference: Zhang, Q. et al. (2023) hnRNPA1 SUMOylation promotes cold hypersensitivity in chronic inflammatory pain by stabilizing TRPA1 mRNA., Cell Rep, PMID 37943660
PXD046186 Dataset with its publication pending (from iProX)Dataset title: SP3-induced Timeless transcription contributes to cell proliferation and pemetrexed resistance of A549 cellsPossible reference: Tian, P. et al. (2024) SP3-induced Timeless transcription contributes to cell growth of lung adenocarcinoma cells., PLoS One, PMID 38354174
PXD046179 Dataset with its publication pending (from PRIDE)Dataset title: Clinical Evaluation of Advanced MALDI-TOF MS for Carbapenemase Subtyping in Gram-negative IsolatesPossible reference: Cheon, DH. et al. (2025) Clinical evaluation of advanced MALDI-TOF MS for carbapenemase subtyping in Gram-negative isolates., J Clin Microbiol, PMID 39611795
PXD046164 Dataset with its publication pending (from PRIDE)Dataset title: Protein-protein interactions of the N-terminal region of PRPF40APossible reference: Martínez-Lumbreras, S. et al. (2024) Intramolecular autoinhibition regulates the selectivity of PRPF40A tandem WW domains for proline-rich motifs., Nat Commun, PMID 38719828
PXD046152 Dataset with its publication pending (from PRIDE)Dataset title: The plastidial protein acetyltransferase GNAT1 interacts with GNAT2 without affecting state transitionsPossible reference: Brünje, A. et al. (2024) The Plastidial Protein Acetyltransferase GNAT1 Forms a Complex With GNAT2, yet Their Interaction Is Dispensable for State Transitions., Mol Cell Proteomics, PMID 39349166
PXD046137 no publication (from MassIVE)Dataset title: Self-assembly of nanofilaments in cyanobacteria for protein co-localizationPossible reference: Zedler, JAZ. et al. (2023) Self-Assembly of Nanofilaments in Cyanobacteria for Protein Co-localization., ACS Nano, PMID 38065569
PXD046120 Dataset with its publication pending (from PRIDE)Dataset title: The deubiquitinase cofactor UAF1 interacts with USP1 and plays an essential role in spermiogenesisPossible reference: Wang, Z. et al. (2024) The deubiquitinase cofactor UAF1 interacts with USP1 and plays an essential role in spermiogenesis., iScience, PMID 38591005
PXD046119 Dataset with its publication pending (from PRIDE)Dataset title: Cryo-EM structures of type IV pili complexed with nanobodies reveal immune escape mechanismsPossible reference: Fernandez-Martinez, D. et al. (2024) Cryo-EM structures of type IV pili complexed with nanobodies reveal immune escape mechanisms., Nat Commun, PMID 38499587
PXD046118 Dataset with its publication pending (from PRIDE)Dataset title: Identification of Ngo-B interacting proteinsPossible reference: Parajuli, B. et al. (2020) Identification of a glycan cluster in gp120 essential for irreversible HIV-1 lytic inactivation by a lectin-based recombinantly engineered protein conjugate., Biochem J, PMID 33057580
PXD046064 no publication (from MassIVE)Dataset title: PHF6 cooperates with SWI/SNF complexes to facilitate transcriptional progressionPossible reference: Mittal, P. et al. (2024) PHF6 cooperates with SWI/SNF complexes to facilitate transcriptional progression., Nat Commun, PMID 39181868
PXD046059 Dataset with its publication pending (from jPOST)Dataset title: Comparative serum proteome profiling of canine benign prostatic hyperplasia before and after castrationPossible reference: Ploypetch, S. et al. (2023) Comparative Serum Proteome Profiling of Canine Benign Prostatic Hyperplasia before and after Castration., Animals (Basel), PMID 38136890
PXD046058 Dataset with its publication pending (from PRIDE)Dataset title: Protein profiling of plasma extracellular vesicles from rheumatoid arthritis patients.Possible reference: Rodríguez-Carrio, J. et al. (2015) Altered profile of circulating microparticles in rheumatoid arthritis patients., Clin Sci (Lond), PMID 25369551
PXD046050 Dataset with its publication pending (from PRIDE)Dataset title: Proteome along the dorso-ventral axis of the early Drosophila embryoPossible reference: Gomez, JM. et al. (2024) Differential regulation of the proteome and phosphoproteome along the dorso-ventral axis of the early Drosophila embryo., Elife, PMID 39221782
PXD046048 Dataset with its publication pending (from jPOST)Dataset title: OGE sensitizes HCC to cisplatin treatmentPossible reference: Chen, JH. et al. (2024) Aqueous Extracts of Ocimum gratissimum Sensitize Hepatocellular Carcinoma Cells to Cisplatin through BRCA1 Inhibition., Int J Mol Sci, PMID 39125994
PXD046038 no publication (from MassIVE)Dataset title: (N)1-methylpseudouridylation of mRNA causes +1 ribosomal frameshiftingPossible reference: Mulroney, TE. et al. (2024) N1-methylpseudouridylation of mRNA causes +1 ribosomal frameshifting., Nature, PMID 38057663
PXD046036 Dataset with its publication pending (from PRIDE)Dataset title: Localized synthesis of molecular chaperones sustains neuronal proteostasisPossible reference: Kawasaki, F. et al. (2016) Small heat shock proteins mediate cell-autonomous and -nonautonomous protection in a Drosophila model for environmental-stress-induced degeneration., Dis Model Mech, PMID 27483356
PXD046016 Dataset with its publication pending (from iProX)Dataset title: NAMPT-targeting PROTAC and nicotinic acid co-administration elicits safe and robust anti-tumor efficacy in NAPRT-deficient pan-cancersPossible reference: Zhu, X. et al. (2024) NAMPT-targeting PROTAC and nicotinic acid co-administration elicit safe and robust anti-tumor efficacy in NAPRT-deficient pan-cancers., Cell Chem Biol, PMID 38906111
PXD046006 Dataset with its publication pending (from PRIDE)Dataset title: On-target, dual aminopeptidase inhibition provides cross-species antimalarial activityPossible reference: Edgar, RCS. et al. (2024) On-target, dual aminopeptidase inhibition provides cross-species antimalarial activity., mBio, PMID 38717141
PXD045996 Dataset with its publication pending (from PRIDE)Dataset title: p38γ/δ activation alters cardiac electrical activity and predisposes to ventricular arrhythmiaPossible reference: Romero-Becerra, R. et al. (2023) p38γ/δ activation alters cardiac electrical activity and predisposes to ventricular arrhythmia., Nat Cardiovasc Res, PMID 39196141
PXD045992 Dataset with its publication pending (from PRIDE)Dataset title: Profiling the interactome of oligonucleotide drugs by proximity biotinylationPossible reference: Hanswillemenke, A. et al. (2024) Profiling the interactome of oligonucleotide drugs by proximity biotinylation., Nat Chem Biol, PMID 38233583
PXD045982 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic profiling of cerebrospinal fluid for development of biomarker in medulloblastomaPossible reference: Low, SYY. et al. (2020) Cerebrospinal fluid cytokines in metastatic group 3 and 4 medulloblastoma., BMC Cancer, PMID 32539808
PXD045973 Dataset with its publication pending (from iProX)Dataset title: Proteomic investigation on the direct corona of nanoparticlesPossible reference: Pisani, C. et al. (2017) The timeline of corona formation around silica nanocarriers highlights the role of the protein interactome., Nanoscale, PMID 27858044
PXD045972 Dataset with its publication pending (from iProX)Dataset title: Chemical Sensors Detect and Resolve Proteome Aggregation in Peripheral Neuropathy induced by Chemotherapeutic AgentsPossible reference: Wang, Z. et al. (2024) Chemical sensors detect and resolve proteome aggregation in peripheral neuropathy cell model induced by chemotherapeutic agents., Bioorg Chem, PMID 38788365
PXD045943 Dataset with its publication pending (from iProX)Dataset title: iTRAQ proteomic analysis of peaonia ostii ‘Fengdan’ leafPossible reference: Zheng, W. et al. (2024) iTRAQ proteome analysis reveals the underling mechanisms of foliage zinc-spraying to improve photosynthetic capacity and seed yields of Peaonia ostii 'Fengdan'., Plant Physiol Biochem, PMID 39217824
PXD045938 Dataset with its publication pending (from iProX)Dataset title: Exogenous pyruvate promotes gentamicin uptake to kill antibiotic-resistant Vibrio alginolyticusPossible reference: Zhang, S. et al. (2019) Reduced redox-dependent mechanism and glucose-mediated reversal in gentamicin-resistant Vibrio alginolyticus., Environ Microbiol, PMID 31595636
PXD045934 Dataset with its publication pending (from PRIDE)Dataset title: RHBDL4-triggered downregulation of COPII adaptor protein TMED7 suppresses TLR4-mediated inflammatory signalingPossible reference: Knopf, JD. et al. (2024) RHBDL4-triggered downregulation of COPII adaptor protein TMED7 suppresses TLR4-mediated inflammatory signaling., Nat Commun, PMID 38453906
PXD045921 Dataset with its publication pending (from PRIDE)Dataset title: Immunoproximity biotinylation reveals the axon initial segment proteomePossible reference: Zhang, W. et al. (2023) Immunoproximity biotinylation reveals the axon initial segment proteome., Nat Commun, PMID 38081810
PXD045915 no publication (from MassIVE)Dataset title: Systematic perturbations of SETD2, NSD1, NSD2, NSD3 and ASH1L reveals their distinct contributions to H3K36 methylationPossible reference: Shipman, GA. et al. (2023) Systematic perturbations of SETD2, NSD1, NSD2, NSD3 and ASH1L reveals their distinct contributions to H3K36 methylation., bioRxiv, PMID 37905045
PXD045910 Dataset with its publication pending (from PRIDE)Dataset title: Physiological variability in mitochondrial rRNA may predispose to metabolic syndromePossible reference: Pecina, P. et al. (2024) Haplotype variability in mitochondrial rRNA predisposes to metabolic syndrome., Commun Biol, PMID 39261587
PXD045906 no publication (from MassIVE)Dataset title: Cerebrospinal fluid proteome of patients with persistent pain and/or postpartum depression after elective caesarean delivery: An exploratory prospective cohort studyPossible reference: Moore, DM. et al. (2017) The Proteomics of Intrathecal Analgesic agents for Chronic Pain., Curr Neuropharmacol, PMID 26907496
PXD045899 Dataset with its publication pending (from PRIDE)Dataset title: The Proteomic Landscape of in vitro Cultured Endothelial Cells across Vascular BedsPossible reference: Groten, SA. et al. (2024) The proteomic landscape of in vitro cultured endothelial cells across vascular beds., Commun Biol, PMID 39143368
PXD045892 Dataset with its publication pending (from PRIDE)Dataset title: Discovery of molecular glue degraders via isogenic morphological profilingPossible reference: Ng, A. et al. (2023) Discovery of Molecular Glue Degraders via Isogenic Morphological Profiling., ACS Chem Biol, PMID 38098458
PXD045890 Dataset with its publication pending (from PRIDE)Dataset title: Calliactis polypus secreted venomPossible reference: Smith, HL. et al. (2023) Acontia, a Specialised Defensive Structure, Has Low Venom Complexity in Calliactis polypus., Toxins (Basel), PMID 36977109
PXD045888 Dataset with its publication pending (from PRIDE)Dataset title: Dynamic proximity based interactome of the transcription factor RELA to identify gene-regulatory networks revealedPossible reference: Leib, L. et al. (2025) The proximity-based protein interactome and regulatory logics of the transcription factor p65 NF-κB/RELA., EMBO Rep, PMID 39753783
PXD045887 Dataset with its publication pending (from PRIDE)Dataset title: An Intra-Individual Paired Mass Spectrometry dataset for decoding Solar-Induced Proteomic Changes in Facial SkinPossible reference: Camillo-Andrade, AC. et al. (2024) Intra-Individual Paired Mass Spectrometry Dataset for Decoding Solar-Induced Proteomic Changes in Facial Skin., Sci Data, PMID 38702328
PXD045855 no publication (from MassIVE)Dataset title: Integrated Immunopeptidomic and Proteomic Analysis of COVID-19 lung biopsiesPossible reference: Yin, S. et al. (2023) Integrated Immunopeptidomic and Proteomic Analysis of COVID-19 lung biopsies., Front Immunol, PMID 37942334
PXD045852 Dataset with its publication pending (from jPOST)Dataset title: Comparative proteomic profiling represents an inhibition of protein synthesis to regulate osmotic stress in Nile tilapia (Oreochromis niloticus) embryosPossible reference: Withyachumnarnkul, B. et al. (2024) Comparative proteomic profiling represents an inhibition of protein synthesis to regulate osmotic stress in Nile tilapia (Oreochromis niloticus) embryos., Comp Biochem Physiol Part D Genomics Proteomics, PMID 38061253
PXD045845 Dataset with its publication pending (from PRIDE)Dataset title: Structural basis for the modulation of MRP2 activity by phosphorylation and drugsPossible reference: Mazza, T. et al. (2024) Structural basis for the modulation of MRP2 activity by phosphorylation and drugs., Nat Commun, PMID 38438394
PXD045840 Dataset with its publication pending (from PRIDE)Dataset title: A framework for performing single-cell spatial metabolomics with cell-type specific protein profiling for tissue systems biologyPossible reference: Srivastava, AK. et al. (2016) Human genome meeting 2016 : Houston, TX, USA. 28 February - 2 March 2016., Hum Genomics, PMID 27294413
PXD045836 Dataset with its publication pending (from PRIDE)Dataset title: Myeloid-derived grancalcin instigates obesity-induced insulin resistance and metabolic inflammationPossible reference: Su, T. et al. (2024) Myeloid-derived grancalcin instigates obesity-induced insulin resistance and metabolic inflammation in male mice., Nat Commun, PMID 38167327
PXD045834 no publication (from MassIVE)Dataset title: NCLX proximity biotinylation screenPossible reference: Garbincius, JF. et al. (2023) TMEM65 regulates NCLX-dependent mitochondrial calcium efflux., bioRxiv, PMID 37873405
PXD045828 Dataset with its publication pending (from PRIDE)Dataset title: Mitochondria proteomics of murine kidney podocytesPossible reference: Qi, W. et al. (2017) Pyruvate kinase M2 activation may protect against the progression of diabetic glomerular pathology and mitochondrial dysfunction., Nat Med, PMID 28436957
PXD045827 no publication (from MassIVE)Dataset title: An inhibitor/anti-inhibitor system controls the activity of lytic transglycosylase MltF in Pseudomonas aeruginosaPossible reference: Wang, M. et al. (2023) An inhibitor/anti-inhibitor system controls the activity of lytic transglycosylase MltF in Pseudomonas aeruginosa., bioRxiv, PMID 37546783
PXD045808 Dataset with its publication pending (from PRIDE)Dataset title: Regulation of the DLC3 tumor suppressor by a novel phosphoswitchPossible reference: Frey, Y. et al. (2024) Regulation of the DLC3 tumor suppressor by a novel phosphoswitch., iScience, PMID 39021807
PXD045798 Dataset with its publication pending (from PRIDE)Dataset title: Secreted and surface proteome and transcriptome of Opisthorchis felineusPossible reference: Wong, Y. et al. (2023) Secreted and surface proteome and transcriptome of Opisthorchis felineus., Front Parasitol, PMID 39816815
PXD045787 Dataset with its publication pending (from PRIDE)Dataset title: A brain-enriched circular RNA controls excitatory neurotransmission and restricts sensitivity to aversive stimuliPossible reference: Giusti, SA. et al. (2024) A brain-enriched circular RNA controls excitatory neurotransmission and restricts sensitivity to aversive stimuli., Sci Adv, PMID 38787942
PXD045773 no publication (from MassIVE)Dataset title: Generation and Characterization of a Monoclonal Antibody Against an African Swine Fever Virus Protein Encoded by the A137R Gene Possible reference: Embury-Hyatt, C. et al. (2023) Generation and characterization of a monoclonal antibody against an African swine fever virus protein encoded by the A137R gene., Front Vet Sci, PMID 37929283
PXD045754 Dataset with its publication pending (from PRIDE)Dataset title: Neuroligin 2 Governs Synaptic Morphology and Function Through RACK1-Cofilin Signaling in DrosophilaPossible reference: Sun, Y. et al. (2023) Neuroligin 2 governs synaptic morphology and function through RACK1-cofilin signaling in Drosophila., Commun Biol, PMID 37853189
PXD045753 Dataset with its publication pending (from PRIDE)Dataset title: Peptidomic analysis of follicular fluid in patients with polycystic ovarian syndromePossible reference: Dai, G. et al. (2012) Different protein expression patterns associated with polycystic ovary syndrome in human follicular fluid during controlled ovarian hyperstimulation., Reprod Fertil Dev, PMID 22935150
PXD045744 Dataset with its publication pending (from jPOST)Dataset title: DIAPH1-MFN2 interaction regulates mitochondria-SR/ER contact and modulates ischemic/hypoxic stressPossible reference: Yepuri, G. et al. (2023) DIAPH1-MFN2 interaction regulates mitochondria-SR/ER contact and modulates ischemic/hypoxic stress., Nat Commun, PMID 37903764
PXD045741 Dataset with its publication pending (from PRIDE)Dataset title: MmoD regulates soluble methane monooxygenase and methanobactin production in Methylosinus trichosporium OB3bPossible reference: Semrau, JD. et al. (2013) Methanobactin and MmoD work in concert to act as the 'copper-switch' in methanotrophs., Environ Microbiol, PMID 23682956
PXD045719 Dataset with its publication pending (from PRIDE)Dataset title: Microglial Rac1 is essential for experience-dependent brain plasticity and cognitive performancePossible reference: Socodato, R. et al. (2023) Microglial Rac1 is essential for experience-dependent brain plasticity and cognitive performance., Cell Rep, PMID 37980559
PXD045715 Dataset with its publication pending (from PRIDE)Dataset title: Chemoproteomics-guided development of SLC15A4 inhibitors with anti-inflammatory activityPossible reference: Boeszoermenyi, A. et al. (2023) A conformation-locking inhibitor of SLC15A4 with TASL proteostatic anti-inflammatory activity., Nat Commun, PMID 37863876
PXD045712 Dataset with its publication pending (from PRIDE)Dataset title: Chemoproteomics-guided development of SLC15A4 inhibitors with anti-inflammatory activityPossible reference: Boeszoermenyi, A. et al. (2023) A conformation-locking inhibitor of SLC15A4 with TASL proteostatic anti-inflammatory activity., Nat Commun, PMID 37863876
PXD045692 Dataset with its publication pending (from iProX)Dataset title: Proteomics of the faba bean root systemPossible reference: Yan, S. et al. (2014) Proteomics insights into the basis of interspecific facilitation for maize (Zea mays) in faba bean (Vicia faba)/maize intercropping., J Proteomics, PMID 25009142
PXD045687 Dataset with its publication pending (from iProX)Dataset title: High-resolution spatially resolved proteomics of complex tissues based on microfluidics and transfer learningPossible reference: Hu, B. et al. (2025) High-resolution spatially resolved proteomics of complex tissues based on microfluidics and transfer learning., Cell, PMID 39855194
PXD045685 Dataset with its publication pending (from jPOST)Dataset title: Synergistic effects of polymyxin and vancomycin combinations on carbapenem- and polymyxin-resistant Klebsiella pneumoniae and their molecular characteristicsPossible reference: Nwabor, OF. et al. (2023) Synergistic effects of polymyxin and vancomycin combinations on carbapenem- and polymyxin-resistant Klebsiella pneumoniae and their molecular characteristics., Microbiol Spectr, PMID 37905823
PXD045672 no publication (from MassIVE)Dataset title: Physiological and Cognitive Changes after Treatments of Cyclophosphamide, Methotrexate, and Fluorouracil: Implications of the Gut Microbiome and Depressive-Like BehaviorPossible reference: Corley, C. et al. (2023) Physiological and cognitive changes after treatments of cyclophosphamide, methotrexate, and fluorouracil: implications of the gut microbiome and depressive-like behavior., Front Neurosci, PMID 37869506
PXD045671 Dataset with its publication pending (from PRIDE)Dataset title: Parkinson’s VPS35[D620N] mutation induces LRRK2 mediated lysosomal association of RILPL1 and TMEM55BPossible reference: Pal, P. et al. (2023) Parkinson's VPS35[D620N] mutation induces LRRK2-mediated lysosomal association of RILPL1 and TMEM55B., Sci Adv, PMID 38091401
PXD045652 Dataset with its publication pending (from PRIDE)Dataset title: BDNF-TrkB signaling orchestrates the buildup process for local sleepPossible reference: ElGrawani, W. et al. (2024) BDNF-TrkB signaling orchestrates the buildup process of local sleep., Cell Rep, PMID 39046880
PXD045646 no publication (from MassIVE)Dataset title: Proteomic analysis of PROSER2 overexpressing cellsPossible reference: Lee, YS. et al. (2024) New Function Annotation of PROSER2 in Pancreatic Ductal Adenocarcinoma., J Proteome Res, PMID 38293943
PXD045622 Dataset with its publication pending (from PRIDE)Dataset title: USP36 stabilizes nucleolar Snail1 to promote ribosome biogenesis and cancer cell survival upon ribotoxic stressPossible reference: Qin, K. et al. (2023) USP36 stabilizes nucleolar Snail1 to promote ribosome biogenesis and cancer cell survival upon ribotoxic stress., Nat Commun, PMID 37833415
PXD045618 Dataset with its publication pending (from PRIDE)Dataset title: SCF dynamics regulated by CAND2Possible reference: Liu, X. et al. (2018) Cand1-Mediated Adaptive Exchange Mechanism Enables Variation in F-Box Protein Expression., Mol Cell, PMID 29499133
PXD045603 no publication (from MassIVE)Dataset title: STING induces LUBAC synthesis of linear ubiquitin chains to activate NFkBPossible reference: Chu, Y. et al. (2021) LUBAC and OTULIN regulate autophagy initiation and maturation by mediating the linear ubiquitination and the stabilization of ATG13., Autophagy, PMID 32543267
PXD045599 Dataset with its publication pending (from PRIDE)Dataset title: Phototropin-Mediated Signaling Kinase regulation in Chlamydomonas reinhardtiiPossible reference: Yuan, Y. et al. (2025) Phototropin connects blue light perception to starch metabolism in green algae., Nat Commun, PMID 40087266
PXD045586 Dataset with its publication pending (from PRIDE)Dataset title: Phosphorylation of CFP10 modulates Mycobacterium tuberculosis virulencePossible reference: Malakar, B. et al. (2023) Phosphorylation of CFP10 modulates Mycobacterium tuberculosis virulence., mBio, PMID 37791794
PXD045565 Dataset with its publication pending (from PRIDE)Dataset title: Cathepsin B Promotes Aβ Proteotoxicity by Modulating Aging Regulating MechanismsPossible reference: Siddiqui, AA. et al. (2024) Cathepsin B promotes Aβ proteotoxicity by modulating aging regulating mechanisms., Nat Commun, PMID 39362844
PXD045562 Dataset with its publication pending (from PRIDE)Dataset title: Aspartyl-tRNA synthetase 2 orchestrates iron-sulfur metabolism in hematopoietic stem cells via fine-tuning alternative RNA splicingPossible reference: Gu, X. et al. (2023) Aspartyl-tRNA synthetase 2 orchestrates iron-sulfur metabolism in hematopoietic stem cells via fine-tuning alternative RNA splicing., Cell Rep, PMID 37838946
PXD045538 Dataset with its publication pending (from iProX)Dataset title: metaproteome of an anammox communityPossible reference: Hawley, AK. et al. (2014) Metaproteomics reveals differential modes of metabolic coupling among ubiquitous oxygen minimum zone microbes., Proc Natl Acad Sci U S A, PMID 25053816
PXD045536 no publication (from MassIVE)Dataset title: Jorge Gomez Deza_Claire Le Pichon_16LFQ_HumanPossible reference: Gómez-Deza, J. et al. (2024) DLK-dependent axonal mitochondrial fission drives degeneration following axotomy., bioRxiv, PMID 36778383
PXD045533 no publication (from MassIVE)Dataset title: Shared and Distinct Mechanisms of UBA1 Inactivation Across Different DiseasesPossible reference: Collins, JC. et al. (2023) Shared and Distinct Mechanisms of UBA1 Inactivation Across Different Diseases., bioRxiv, PMID 37873213
PXD045531 Dataset with its publication pending (from PRIDE)Dataset title: Cathepsin B Promotes Aβ Proteotoxicity by Modulating Aging Regulating MechanismsPossible reference: Siddiqui, AA. et al. (2024) Cathepsin B promotes Aβ proteotoxicity by modulating aging regulating mechanisms., Nat Commun, PMID 39362844
PXD045525 Dataset with its publication pending (from PRIDE)Dataset title: Secreted footprint of pluripotency in Man-13 HeSCsPossible reference: Lewis, PA. et al. (2024) A secreted proteomic footprint for stem cell pluripotency., PLoS One, PMID 38875182
PXD045522 Dataset with its publication pending (from PRIDE)Dataset title: Multi-Omic and Functional Analysis for Classification and Treatment of Sarcomas with FUS-TFCP2 or EWSR1-TFCP2 FusionsPossible reference: Agaram, NP. et al. (2019) Expanding the Spectrum of Intraosseous Rhabdomyosarcoma: Correlation Between 2 Distinct Gene Fusions and Phenotype., Am J Surg Pathol, PMID 30720533
PXD045519 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic biomarkers in seminal plasma as predictors of reproductive potential in azoospermic menPossible reference: Fietz, D. et al. (2024) Proteomic biomarkers in seminal plasma as predictors of reproductive potential in azoospermic men., Front Endocrinol (Lausanne), PMID 38654926
PXD045499 no publication (from MassIVE)Dataset title: Staphylococcus aureus LukAB stem domain unlatching influences toxin oligomerizationPossible reference: Ilmain, JK. et al. (2023) Unlatching of the stem domains in the Staphylococcus aureus pore-forming leukocidin LukAB influences toxin oligomerization., J Biol Chem, PMID 37802313
PXD045489 Dataset with its publication pending (from jPOST)Dataset title: Tyrosinase-based proximity labeling in living cell and in vivoPossible reference: Zhu, H. et al. (2024) Tyrosinase-Based Proximity Labeling in Living Cells and In Vivo., J Am Chem Soc, PMID 38445591
PXD045483 Dataset with its publication pending (from PRIDE)Dataset title: Aged gastrocnemius muscle of mice positively responds to a late onset adapted physical trainingPossible reference: Cisterna, B. et al. (2023) Aged gastrocnemius muscle of mice positively responds to a late onset adapted physical training., Front Cell Dev Biol, PMID 38020923
PXD045468 Dataset with its publication pending (from PRIDE)Dataset title: Tamm-Horsfall protein augments neutrophil NETosisPossible reference: Mercado-Evans, V. et al. (2024) Tamm-Horsfall protein augments neutrophil NETosis during urinary tract infection., bioRxiv, PMID 38370726
PXD045454 Dataset with its publication pending (from PRIDE)Dataset title: The interactome of histone deacetylase HDA19 in dark-grown Arabidopsis seedlingsPossible reference: Vélez-Bermúdez, IC. et al. (2023) The interactome of histone deacetylase HDA19 in dark-grown Arabidopsis seedlings., Front Plant Sci, PMID 38078106
PXD045452 Dataset with its publication pending (from PRIDE)Dataset title: The name of the game: palaeoproteomics and radiocarbon dates further refine the presence and dispersal of caprines in eastern and southern AfricaPossible reference: Le Meillour, L. et al. (2023) The name of the game: palaeoproteomics and radiocarbon dates further refine the presence and dispersal of caprines in eastern and southern Africa., R Soc Open Sci, PMID 38026023
PXD045446 Dataset with its publication pending (from PRIDE)Dataset title: Structure of transcribing RNA polymerase II-Elongin complexPossible reference: Chen, Y. et al. (2023) Structure of the transcribing RNA polymerase II-Elongin complex., Nat Struct Mol Biol, PMID 37932450
PXD045423 no publication (from MassIVE)Dataset title: Dynamics of single-cell protein covariation during epithelial-mesenchymal transitionPossible reference: Khan, S. et al. (2024) Dynamics of single-cell protein covariation during epithelial-mesenchymal transition., bioRxiv, PMID 38187715
PXD045415 Dataset with its publication pending (from PRIDE)Dataset title: DDA1, a novel factor in transcription-coupled repair, modulates CRL4CSA dynamics at DNA damage-stalled RNA polymerase IIPossible reference: Schiffmacher, DL. et al. (2023) DDA1, a novel factor in transcription-coupled repair, modulates CRL4CSA dynamics at DNA damage-stalled RNA polymerase II., Res Sq, PMID 37886519
PXD045411 Dataset with its publication pending (from PRIDE)Dataset title: Functional analysis of Cdc20 reveals a critical role of CRY box in mitotic checkpoint signalingPossible reference: Zhang, Y. et al. (2024) Functional analysis of Cdc20 reveals a critical role of CRY box in mitotic checkpoint signaling., Commun Biol, PMID 38337031
PXD045396 Dataset with its publication pending (from iProX)Dataset title: circRNA regulates macrophage pyroptosis in infectionPossible reference: Yang, D. et al. (2023) CircRNA_0075723 protects against pneumonia-induced sepsis through inhibiting macrophage pyroptosis by sponging miR-155-5p and regulating SHIP1 expression., Front Immunol, PMID 36923408
PXD045393 Dataset with its publication pending (from PRIDE)Dataset title: Multiple phosphorylation sites regulate the activity of the repressor Mig1 in Candida albicansPossible reference: Ramírez-Zavala, B. et al. (2023) Multiple phosphorylation sites regulate the activity of the repressor Mig1 in Candida albicans., mSphere, PMID 38010000
PXD045380 Dataset with its publication pending (from PRIDE)Dataset title: Human cell surface-AAV interactomes identify LRP6 as blood-brain-barrier transcytosis receptor and immune cytokine IL3 as AAV9 binderPossible reference: Shay, TF. et al. (2024) Human cell surface-AAV interactomes identify LRP6 as blood-brain barrier transcytosis receptor and immune cytokine IL3 as AAV9 binder., Nat Commun, PMID 39245720
PXD045377 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic analysis of granulomas from cattle and pigs naturally infected with Mycobacterium tuberculosis complex by MALDI-MSIPossible reference: Larenas-Muñoz, F. et al. (2024) Proteomic analysis of granulomas from cattle and pigs naturally infected with Mycobacterium tuberculosis complex by MALDI imaging., Front Immunol, PMID 39021575
PXD045375 Dataset with its publication pending (from iProX)Dataset title: Integrating physiological features and proteomic analyses provides new insight in blue/red light-treated moso bamboo (Phyllostachys edulis)Possible reference: Zhang, C. et al. (2024) Integrating Physiological Features and Proteomic Analyses Provides New Insights in Blue/Red Light-Treated Moso Bamboo (Phyllostachys edulis)., J Agric Food Chem, PMID 38780458
PXD045328 Dataset with its publication pending (from PRIDE)Dataset title: Characterizing the secretome of EGFR mutant lung adenocarcinomaPossible reference: Luu, JK. et al. (2023) Characterizing the secretome of EGFR mutant lung adenocarcinoma., Front Oncol, PMID 38260835
PXD045311 Dataset with its publication pending (from PRIDE)Dataset title: A comprehensive portrait of tissue-, age- and sex-specific DNA modifications in rodents and humansPossible reference: Guilbaud, A. et al. (2023) Discovery adductomics provides a comprehensive portrait of tissue-, age- and sex-specific DNA modifications in rodents and humans., Nucleic Acids Res, PMID 37843128
PXD045278 N. Pierre, V.A. Huynh-Thu, D. Baiwir, et al., Serum proteome
signatures associated with ileal and colonic ulcers in Crohn's disease, Journal of
Proteomics (2023), https://doi.org/10.1016/j.jprot.2024.105199 (from PanoramaPublic)Dataset title: Serum proteome signatures associated with ileal and colonic ulcers in Crohn's diseasePossible reference: Pierre, N. et al. (2024) Serum proteome signatures associated with ileal and colonic ulcers in Crohn's disease., J Proteomics, PMID 38763457
PXD045272 Dataset with its publication pending (from PRIDE)Dataset title: Tur1 regulates alternative TSS usage in CryptococcusPossible reference: Dang, TTV. et al. (2024) Alternative TSS use is widespread in Cryptococcus fungi in response to environmental cues and regulated genome-wide by the transcription factor Tur1., PLoS Biol, PMID 39052688
PXD045270 Dataset with its publication pending (from PRIDE)Dataset title: TMT-based quantitative proteomics reveals the protective mechanism of Tenuigenin after experimental intracerebral hemorrhage in micePossible reference: Wang, P. et al. (2024) TMT-based quantitative proteomics reveals the protective mechanism of tenuigenin after experimental intracerebral hemorrhage in mice., J Ethnopharmacol, PMID 37739103
PXD045256 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic analysis of APLN, APLN-DM-expressing cells Possible reference: Demoures, B. et al. (2025) Repression of apelin Furin cleavage sites provides antimetastatic strategy in colorectal cancer., EMBO Mol Med, PMID 39962271
PXD045248 Dataset with its publication pending (from iProX)Dataset title: Prediction of glycopeptide fragment mass spectra by deep learningPossible reference: Yang, Y. et al. (2024) Prediction of glycopeptide fragment mass spectra by deep learning., Nat Commun, PMID 38503734
PXD045246 Dataset with its publication pending (from PRIDE)Dataset title: Glycoproteomic and Proteomic analysis of Burkholderia cenocepacia reveals glycosylation events within FliF and MotB are dispensable for motility. - FliF DIAPossible reference: Lewis, JM. et al. (2024) Glycoproteomic and proteomic analysis of Burkholderia cenocepacia reveals glycosylation events within FliF and MotB are dispensable for motility., Microbiol Spectr, PMID 38709084
PXD045244 Dataset with its publication pending (from jPOST)Dataset title: Secretomic effects of amyloid beta peptides on Alzheimer’s disease related proteins in differentiated SH-SY5Y neuroblastoma cell Possible reference: Roytrakul, S. et al. (2024) Secretomic changes of amyloid beta peptides on Alzheimer's disease related proteins in differentiated human SH-SY5Y neuroblastoma cells., PeerJ, PMID 39035166
PXD045240 Dataset with its publication pending (from jPOST)Dataset title: Proteomic analysis of pulmonary arteries and lung tissues from dogs affected with pulmonary hypertension secondary to degenerative mitral valve diseasePossible reference: Sakarin, S. et al. (2024) Proteomic analysis of pulmonary arteries and lung tissues from dogs affected with pulmonary hypertension secondary to degenerative mitral valve disease., PLoS One, PMID 38181036
PXD045239 Dataset with its publication pending (from PRIDE)Dataset title: Adaptive design of mRNA-loaded extracellular vesicles for targeted immunotherapy of cancerPossible reference: Dong, S. et al. (2023) Adaptive design of mRNA-loaded extracellular vesicles for targeted immunotherapy of cancer., Nat Commun, PMID 37857647
PXD045234 Dataset with its publication pending (from PRIDE)Dataset title: The CASP3 Prodomain Regulates Human Cell Survival and ProliferationPossible reference: Eskandari, E. et al. (2024) Dependence of human cell survival and proliferation on the CASP3 prodomain., Cell Death Discov, PMID 38321033
PXD045210 Dataset with its publication pending (from jPOST)Dataset title: Mapping Nanoscale-to-Single Cell Phosphoproteomic Landscape by Chip-DIA Possible reference: Muneer, G. et al. (2025) Mapping Nanoscale-To-Single-Cell Phosphoproteomic Landscape by Chip-DIA., Adv Sci (Weinh), PMID 39401432
PXD045194 Dataset with its publication pending (from PRIDE)Dataset title: Targeting metabolic fluxes reverts metastatic transitions in ovarian cancerPossible reference: Arora, G. et al. (2023) Targeting metabolic fluxes reverts metastatic transitions in ovarian cancer., iScience, PMID 37876796
PXD045192 Dataset with its publication pending (from jPOST)Dataset title: Hands-free Proteomic Profiling of Urinary Extracellular Vesicles with a High-throughput Automated WorkflowPossible reference: Lee, ZC. et al. (2023) Hands-Free Proteomic Profiling of Urinary Extracellular Vesicles with a High-Throughput Automated Workflow., J Am Soc Mass Spectrom, PMID 37870912
PXD045185 Dataset with its publication pending (from PRIDE)Dataset title: Structural recognition and stabilization of tyrosine hydroxylase by the J-domain protein DNAJC12Possible reference: Tai, MDS. et al. (2025) Structural recognition and stabilization of tyrosine hydroxylase by the J-domain protein DNAJC12., Nat Commun, PMID 40113792
PXD045180 no publication (from MassIVE)Dataset title: Assessing the precision of a detergent-assisted cartridge precipitation workflow for quantitative proteomicsPossible reference: Nickerson, JL. et al. (2024) Assessing the precision of a detergent-assisted cartridge precipitation workflow for non-targeted quantitative proteomics., Proteomics, PMID 38299459
PXD045179 Dataset with its publication pending (from PRIDE)Dataset title: A Non-symmetrical p97 Conformation Favors Ufd1/Npl4 RecruitmentPossible reference: Arie, M. et al. (2024) A non-symmetrical p97 conformation initiates a multistep recruitment of Ufd1/Npl4., iScience, PMID 38947518
PXD045171 Dataset with its publication pending (from PRIDE)Dataset title: Identification of Plasma Biomarkers from Rheumatoid Arthritis Patients Using an Optimized SWATH Proteomics WorkflowPossible reference: Jin, L. et al. (2023) Identification of Plasma Biomarkers from Rheumatoid Arthritis Patients Using an Optimized Sequential Window Acquisition of All THeoretical Mass Spectra (SWATH) Proteomics Workflow., Proteomes, PMID 37873874
PXD045154 Dataset with its publication pending (from PRIDE)Dataset title: Interferon restores replication fork stability and cell viability in BRCA-defective cells via ISG15Possible reference: Moro, RN. et al. (2023) Interferon restores replication fork stability and cell viability in BRCA-defective cells via ISG15., Nat Commun, PMID 37783689
PXD045088 Dataset with its publication pending (from PRIDE)Dataset title: Impaired cAMP Processivity by Phosphodiesterase-Protein Kinase A complexes in AcrodysostosisPossible reference: Venkatakrishnan, V. et al. (2023) Impaired cAMP processivity by phosphodiesterase-protein kinase A complexes in acrodysostosis., Front Mol Biosci, PMID 37808519
PXD045086 no publication (from MassIVE)Dataset title: Imidacloprid increases the prevalence of Lotmaria passim in honey bee workersPossible reference: Erban, T. et al. (2023) Imidacloprid increases the prevalence of the intestinal parasite Lotmaria passim in honey bee workers., Sci Total Environ, PMID 37699488
PXD045054 Dataset with its publication pending (from PRIDE)Dataset title: Conserved immunomodulation and variation in host association by Xanthomonadales commensals in Arabidopsis root microbiotaPossible reference: Ordon, J. et al. (2025) Conserved immunomodulation and variation in host association by Xanthomonadales commensals in Arabidopsis root microbiota., Nat Plants, PMID 39972185
PXD045052 Dataset with its publication pending (from PRIDE)Dataset title: Regulation of eDHFR-tagged proteins with trimethoprim PROTACsPossible reference: Etersque, JM. et al. (2023) Regulation of eDHFR-tagged proteins with trimethoprim PROTACs., Nat Commun, PMID 37923771
PXD045042 Dataset with its publication pending (from PRIDE)Dataset title: Adipose triglyceride lipase is a therapeutic target in advanced prostate cancer that promotes metabolic plasticityPossible reference: Awad, D. et al. (2024) Adipose Triglyceride Lipase Is a Therapeutic Target in Advanced Prostate Cancer That Promotes Metabolic Plasticity., Cancer Res, PMID 38038968
PXD045015 Dataset with its publication pending (from iProX)Dataset title: FBXO7 Ubiquitinates PRMT1 to Suppress Serine Synthesis and Tumor Growth in Hepatocellular CarcinomaPossible reference: Luo, L. et al. (2024) FBXO7 ubiquitinates PRMT1 to suppress serine synthesis and tumor growth in hepatocellular carcinoma., Nat Commun, PMID 38839752
PXD045012 Dataset with its publication pending (from PRIDE)Dataset title: Automating data analysis for hydrogen/deuterium exchange mass spectrometry using data-independent acquisition methodologyPossible reference: Burns, KM. et al. (2015) HX-MS2 for high performance conformational analysis of complex protein states., Protein Sci, PMID 26009873
PXD044991 Dataset with its publication pending (from PRIDE)Dataset title: One-Tip enables comprehensive proteome coverage in minimal cells and single zygotesPossible reference: Ye, Z. et al. (2024) One-Tip enables comprehensive proteome coverage in minimal cells and single zygotes., Nat Commun, PMID 38503780
PXD044989 Dataset with its publication pending (from iProX)Dataset title: The resistance mechanism of baohuoside I in Staphylococcus aureusPossible reference: Wen, Z. et al. (2024) Baohuoside I inhibits virulence of multidrug-resistant Staphylococcus aureus by targeting the transcription Staphylococcus accessory regulator factor SarZ., Phytomedicine, PMID 38810547
PXD044980 Dataset with its publication pending (from PRIDE)Dataset title: Paternal under and over nutrition modify semen composition and preimplantation embryo developmental kinetics in micePossible reference: Morgan, HL. et al. (2024) Paternal undernutrition and overnutrition modify semen composition and preimplantation embryo developmental kinetics in mice., BMC Biol, PMID 39278917
PXD044979 no publication (from MassIVE)Dataset title: Speg Interactions that Regulate the Stability of Excitation-Contraction Coupling Protein Complexes in Triads and DyadsPossible reference: Lee, CS. et al. (2023) Speg interactions that regulate the stability of excitation-contraction coupling protein complexes in triads and dyads., Commun Biol, PMID 37709832
PXD044970 Dataset with its publication pending (from PRIDE)Dataset title: An adaptive biomolecular condensation response is conserved across environmentally divergent speciesPossible reference: Kik, SK. et al. (2023) An adaptive biomolecular condensation response is conserved across environmentally divergent species., bioRxiv, PMID 37546789
PXD044965 no publication (from MassIVE)Dataset title: ALK signalling primes the DNA damage response sensitizing ALK-driven neuroblastoma to therapeutic ATR inhibitionPossible reference: Borenäs, M. et al. (2024) ALK signaling primes the DNA damage response sensitizing ALK-driven neuroblastoma to therapeutic ATR inhibition., Proc Natl Acad Sci U S A, PMID 38154064
PXD044950 Dataset with its publication pending (from PRIDE)Dataset title: Structural basis for the toxicity of Legionella pneumophila effector SidHPossible reference: Sharma, R. et al. (2023) Structural basis for the toxicity of Legionella pneumophila effector SidH., Nat Commun, PMID 37923743
PXD044946 Dataset with its publication pending (from iProX)Dataset title: The target landscape of clinical covalent drugsPossible reference: Zylberberg, C. et al. (2016) Pharmaceutical liposomal drug delivery: a review of new delivery systems and a look at the regulatory landscape., Drug Deliv, PMID 27145899
PXD044925 Dataset with its publication pending (from PRIDE)Dataset title: Hydrogen Sulfide Coordinates Glucose Metabolism Switch through Destabilizing Tetrameric Pyruvate Kinase M2Possible reference: Wang, RH. et al. (2024) Hydrogen sulfide coordinates glucose metabolism switch through destabilizing tetrameric pyruvate kinase M2., Nat Commun, PMID 39198443
PXD044918 Dataset with its publication pending (from iProX)Dataset title: Immunoprecipitation-Mass Spectrometry in MDA-MB-231 cellsPossible reference: Li, SS. et al. (2017) p62/SQSTM1 interacts with vimentin to enhance breast cancer metastasis., Carcinogenesis, PMID 28968743
PXD044917 Dataset with its publication pending (from iProX)Dataset title: Lymphatic platelet thrombosis inhibits fracture healing by decreased lymphatic transporting DAMPs in micePossible reference: Zheng, Y. et al. (2025) Lymphatic platelet thrombosis limits bone repair by precluding lymphatic transporting DAMPs., Nat Commun, PMID 39827193
PXD044915 Dataset with its publication pending (from PRIDE)Dataset title: Ustilago maydis PR-1-like protein has evolved two distinct domains for dual virulence activitiesPossible reference: Lin, YH. et al. (2023) Ustilago maydis PR-1-like protein has evolved two distinct domains for dual virulence activities., Nat Commun, PMID 37716995
PXD044911 Dataset with its publication pending (from PRIDE)Dataset title: pH-gated nanoparticles selectively regulate lysosomal function of tumour-associated macrophages for cancer immunotherapyPossible reference: Tang, M. et al. (2023) pH-gated nanoparticles selectively regulate lysosomal function of tumour-associated macrophages for cancer immunotherapy., Nat Commun, PMID 37735462
PXD044898 Dataset with its publication pending (from PRIDE)Dataset title: DUSP8 dephosphorylates Pur-alphaPossible reference: Chuang, HC. et al. (2023) DUSP8 induces TGF-β-stimulated IL-9 transcription and Th9-mediated allergic inflammation by promoting nuclear export of Pur-α., J Clin Invest, PMID 37909329
PXD044874 Dataset with its publication pending (from PRIDE)Dataset title: Integrated widely targeted metabolomics and network pharmacology revealed quality disparities between Guizhou and conventional producing areas of Codonopsis RadixPossible reference: Zhang, K. et al. (2023) Integrated widely targeted metabolomics and network pharmacology revealed quality disparities between Guizhou and conventional producing areas of Codonopsis Radix., Front Nutr, PMID 37915621
PXD044865 Cruz-Mireles N, Osés-Ruiz M, Derbyshire P, Jégousse C, Ryder LS, Bautista MJ, Eseola AB, Sklenar J, Tang B, Yan X, Ma W, Findlay KC, Were V, MacLean D, Talbot NJ, Menke FLH. The phosphorylation landscape of infection-related development by the rice blast (from PanoramaPublic)Dataset title: The phosphorylation landscape of infection-related development by the rice blast fungusPossible reference: Cruz-Mireles, N. et al. (2024) The phosphorylation landscape of infection-related development by the rice blast fungus., Cell, PMID 38729111
PXD044856 Dataset with its publication pending (from PRIDE)Dataset title: Germline-specific RNA helicase DDX4 forms cytoplasmic granules in cancer cells and promotes tumor growthPossible reference: Olotu, O. et al. (2024) Germline-specific RNA helicase DDX4 forms cytoplasmic granules in cancer cells and promotes tumor growth., Cell Rep, PMID 38963760
PXD044850 Dataset with its publication pending (from PRIDE)Dataset title: Transport properties of canonical PIN proteins and the role of the loop in auxin transportPossible reference: Janacek, DP. et al. (2024) Transport properties of canonical PIN-FORMED proteins from Arabidopsis and the role of the loop domain in auxin transport., Dev Cell, PMID 39413780
PXD044830 Dataset with its publication pending (from PRIDE)Dataset title: The phosphorylation landscape of infection-related development by the rice blast fungusPossible reference: Cruz-Mireles, N. et al. (2024) The phosphorylation landscape of infection-related development by the rice blast fungus., Cell, PMID 38729111
PXD044824 Dataset with its publication pending (from PRIDE)Dataset title: DUSP8 induces TGF-β-stimulated IL-9 transcription and Th9-mediated allergic inflammation by promoting nuclear export of Pur-αPossible reference: Chuang, HC. et al. (2023) DUSP8 induces TGF-β-stimulated IL-9 transcription and Th9-mediated allergic inflammation by promoting nuclear export of Pur-α., J Clin Invest, PMID 37909329
PXD044823 Dataset with its publication pending (from iProX)Dataset title: Proteomic Analysis of Spry1-Amh-cre Conditional Knockout Mouse TestisPossible reference: Fukuda, E. et al. (2021) Identification and characterization of the antigen recognized by the germ cell mAb TRA98 using a human comprehensive wet protein array., Genes Cells, PMID 33527666
PXD044818 Dataset with its publication pending (from PRIDE)Dataset title: DUSP8 induces TGF-β-stimulated IL-9 transcription and Th9-mediated allergic inflammation by promoting nuclear export of Pur-αPossible reference: Chuang, HC. et al. (2023) DUSP8 induces TGF-β-stimulated IL-9 transcription and Th9-mediated allergic inflammation by promoting nuclear export of Pur-α., J Clin Invest, PMID 37909329
PXD044816 no publication (from MassIVE)Dataset title: PML::RARA and GATA2 proteins interact via DNA templates to induce aberrant self-renewal in hematopoietic cellsPossible reference: Katerndahl, CDS. et al. (2024) PML::RARA and GATA2 proteins interact via DNA templates to induce aberrant self-renewal in mouse and human hematopoietic cells., Proc Natl Acad Sci U S A, PMID 38648485
PXD044812 Dataset with its publication pending (from PRIDE)Dataset title: Regulators of mitonuclear balance link mitochondrial metabolism to mtDNA expressionPossible reference: Kramer, NJ. et al. (2023) Regulators of mitonuclear balance link mitochondrial metabolism to mtDNA expression., Nat Cell Biol, PMID 37770567
PXD044806 Dataset with its publication pending (from jPOST)Dataset title: HTRA1 prevents and reverses α-synuclein aggregation, rendering it non-toxic and seeding incompetent Possible reference: Chen, S. et al. (2023) HtrA1 prevents and reverses α-synuclein aggregation, rendering it non-toxic and seeding incompetent., Res Sq, PMID 37674720
PXD044800 Dataset with its publication pending (from PRIDE)Dataset title: A stop-and-go mechanism controls mitochondrial respirationPossible reference: Moretti-Horten, DN. et al. (2024) Synchronized assembly of the oxidative phosphorylation system controls mitochondrial respiration in yeast., Dev Cell, PMID 38508182
PXD044784 Dataset with its publication pending (from PRIDE)Dataset title: Comprehensive proteomic analysis of JC polyomavirus-infected human astrocytes and their extracellular vesiclesPossible reference: Oberholster, L. et al. (2023) Comprehensive proteomic analysis of JC polyomavirus-infected human astrocytes and their extracellular vesicles., Microbiol Spectr, PMID 37815349
PXD044782 Dataset with its publication pending (from PRIDE)Dataset title: DNA damage stress control is a tLT- and EHMT2-dependent central feature of Merkel Cell CarcinomaPossible reference: Bachiri, K. et al. (2025) DNA Damage Stress Control Is a Truncated Large T Antigen and Euchromatic Histone Lysine Methyltransferase 2-Dependent Central Feature of Merkel Cell Carcinoma., J Invest Dermatol, PMID 38908781
PXD044780 Dataset with its publication pending (from PRIDE)Dataset title: A synthetic lethal strategy to target chromosome 8p deleted cancersPossible reference: Yan, X. et al. (2019) Inhibition of Thioredoxin/Thioredoxin Reductase Induces Synthetic Lethality in Lung Cancers with Compromised Glutathione Homeostasis., Cancer Res, PMID 30401714
PXD044773 Dataset with its publication pending (from PRIDE)Dataset title: Cell-specific crosstalk proteomics reveals cathepsin B signaling as a driver of glioblastoma malignancy near the subventricular zonePossible reference: Norton, ES. et al. (2023) Cell-specific crosstalk proteomics reveals cathepsin B signaling as a driver of glioblastoma malignancy near the subventricular zone., bioRxiv, PMID 37662251
PXD044749 Dataset with its publication pending (from PRIDE)Dataset title: A stop-and-go mechanism controls mitochondrial respirationPossible reference: Moretti-Horten, DN. et al. (2024) Synchronized assembly of the oxidative phosphorylation system controls mitochondrial respiration in yeast., Dev Cell, PMID 38508182
PXD044737 Dataset with its publication pending (from jPOST)Dataset title: RNA pulldown label-free proteomics analysisPossible reference: Tenzer, S. et al. (2013) Proteome-wide characterization of the RNA-binding protein RALY-interactome using the in vivo-biotinylation-pulldown-quant (iBioPQ) approach., J Proteome Res, PMID 23614458
PXD044724 Dataset with its publication pending (from PRIDE)Dataset title: STPP-UP: A alternative method for drug target identification using protein thermal stabilityPossible reference: Zijlmans, DW. et al. (2023) STPP-UP: An alternative method for drug target identification using protein thermal stability., J Biol Chem, PMID 37742922
PXD044714 Dataset with its publication pending (from PRIDE)Dataset title: Spatial Proteomics of a Human Brain Tumour at 40 µm resolutionPossible reference: Davis, S. et al. (2023) Deep topographic proteomics of a human brain tumour., Nat Commun, PMID 38001067
PXD044710 Dataset with its publication pending (from iProX)Dataset title: Identification of CBX3 interacting proteins by mass specPossible reference: Kulyyassov, A. et al. (2021) Application of Skyline for Analysis of Protein-Protein Interactions In Vivo., Molecules, PMID 34885753
PXD044702 Dataset with its publication pending (from PRIDE)Dataset title: An adaptive biomolecular condensation response is conserved across environmentally divergent speciesPossible reference: Kik, SK. et al. (2023) An adaptive biomolecular condensation response is conserved across environmentally divergent species., bioRxiv, PMID 37546789
PXD044698 Dataset with its publication pending (from PRIDE)Dataset title: Combined inhibition of MNK signaling and BET proteins reveals TGM2 as a novel vulnerability in melanomaPossible reference: Méant, A. et al. (2025) Combined Inhibition of MNK Signaling and BET Proteins Reveals TGM2 as a Novel Vulnerability in Melanoma., J Invest Dermatol, PMID 39357785
PXD044684 Dataset with its publication pending (from PRIDE)Dataset title: MYL3 protects chondrocytes from senescence by inhibiting clathrin-mediated endocytosis and activating of Notch signalingPossible reference: Cao, H. et al. (2023) MYL3 protects chondrocytes from senescence by inhibiting clathrin-mediated endocytosis and activating of Notch signaling., Nat Commun, PMID 37794006
PXD044682 Dataset with its publication pending (from PRIDE)Dataset title: Phosphoproteomic Landscape of Pseudorabies Virus Infection Reveals Multiple Potential Antiviral TargetsPossible reference: Bo, Z. et al. (2024) Phosphoproteomic landscape of pseudorabies virus infection reveals multiple potential antiviral targets., Microbiol Spectr, PMID 37991362
PXD044669 Dataset with its publication pending (from iProX)Dataset title: LC-MS/MS analysis of secreted proteins from CAFs or CAF cells transfected with miR-33aPossible reference: Melchionna, R. et al. (2020) The actin modulator hMENA regulates GAS6-AXL axis and pro-tumor cancer/stromal cell cooperation., EMBO Rep, PMID 32909687
PXD044661 no publication (from MassIVE)Dataset title: CRL4-DCAF15 control of cohesin dynamics sustains 1 cell proliferationPossible reference: Grothusen, GP. et al. (2024) DCAF15 control of cohesin dynamics sustains acute myeloid leukemia., Nat Commun, PMID 38961054
PXD044642 Dataset with its publication pending (from PRIDE)Dataset title: Development of pathophysiologically relevant models of sickle cell disease and β-thalassemia for therapeutic studiesPossible reference: Gupta, P. et al. (2024) Development of pathophysiologically relevant models of sickle cell disease and β-thalassemia for therapeutic studies., Nat Commun, PMID 38413594
PXD044614 Dataset with its publication pending (from jPOST)Dataset title: Proteomic analysis of Cowpea aphid Aphis craccivora salivaPossible reference: Pavithran, S. et al. (2024) Identification of salivary proteins of the cowpea aphid Aphis craccivora by transcriptome and LC-MS/MS analyses., Insect Biochem Mol Biol, PMID 38123026
PXD044610 Dataset with its publication pending (from jPOST)Dataset title: DISTINCT SALIVARY PROTEOMIC PATTERNS AS SIGNATURE FOR MOLAR INCISOR HYPOMINERALIZATION STAGESPossible reference: Toledo, EDS. et al. (2025) Salivary proteomics as signature for molar incisor hypomineralization stages., Clin Oral Investig, PMID 39890717
PXD044608 no publication (from MassIVE)Dataset title: Blood proteome profiling reveals biomarkers and pathway al-terations in fragile X PM at risk for developing fragile XPossible reference: Zafarullah, M. et al. (2023) Blood Proteome Profiling Reveals Biomarkers and Pathway Alterations in Fragile X PM at Risk for Developing FXTAS., Int J Mol Sci, PMID 37686279
PXD044595 Dataset with its publication pending (from PRIDE)Dataset title: HSF-1 promotes longevity through ubiquilin-1 dependent mitochondrial remodellingPossible reference: Erinjeri, AP. et al. (2024) HSF-1 promotes longevity through ubiquilin-1-dependent mitochondrial network remodelling., Nat Commun, PMID 39532882
PXD044591 Dataset with its publication pending (from jPOST)Dataset title: The Alpha-1A Adrenergic Receptor Regulates Fatty Acid-Dependent Oxidative Phosphorylation in the Mouse HeartPossible reference: Sandroni, PB. et al. (2024) The alpha-1A adrenergic receptor regulates mitochondrial oxidative metabolism in the mouse heart., J Mol Cell Cardiol, PMID 38331556
PXD044576 no publication (from MassIVE)Dataset title: EndoGenius: Optimized neuropeptide identification from mass spectrometry datasetsPossible reference: Fields, L. et al. (2024) EndoGenius: Optimized Neuropeptide Identification from Mass Spectrometry Datasets., J Proteome Res, PMID 38426863
PXD044569 Dataset with its publication pending (from PRIDE)Dataset title: Quantitative proteomics reveals tissue-specific, infection-induced and species-specific neutrophil protein signatures – human blood neutrophilsPossible reference: Sollberger, G. et al. (2024) Quantitative proteomics reveals tissue-specific, infection-induced and species-specific neutrophil protein signatures., Sci Rep, PMID 38472281
PXD044550 Dataset with its publication pending (from PRIDE)Dataset title: Coordinated miRNA activity mediates the cellular transition into dormancy during embryonic diapausePossible reference: Iyer, DP. et al. (2024) Combinatorial microRNA activity is essential for the transition of pluripotent cells from proliferation into dormancy., Genome Res, PMID 38719471
PXD044535 Dataset with its publication pending (from iProX)Dataset title: Proteomics of liver of Mus musculus infected by Clonorchis sinensis and the molecular mechanism of the interaction of Clonorchis sinensis with the liver of its hostPossible reference: Wu, Y. et al. (2023) Multilayer omics reveals the molecular mechanism of early infection of Clonorchis sinensis juvenile., Parasit Vectors, PMID 37587524
PXD044528 Dataset with its publication pending (from PRIDE)Dataset title: Rab30 regulates lipid homeostasis in the hepatocyte during fastingPossible reference: Régnier, M. et al. (2018) Insights into the role of hepatocyte PPARα activity in response to fasting., Mol Cell Endocrinol, PMID 28774777
PXD044527 no publication (from MassIVE)Dataset title: Precision-engineered organoids of the human fallopian tubePossible reference: Crawford, AJ. et al. (2023) Precision-engineered biomimetics: the human fallopian tube., bioRxiv, PMID 37333379
PXD044525 Dataset with its publication pending (from PRIDE)Dataset title: Eggs of the mosquito Aedes aegypti survive desiccation by rewiring their polyamine and lipid metabolismPossible reference: Prasad, A. et al. (2023) Eggs of the mosquito Aedes aegypti survive desiccation by rewiring their polyamine and lipid metabolism., PLoS Biol, PMID 37874799
PXD044523 Dataset with its publication pending (from PRIDE)Dataset title: Species-wide quantitative transcriptomes and proteomes reveal distinct genetic control of gene expression variation in yeastPossible reference: Teyssonnière, E. et al. (2023) Species-wide quantitative transcriptomes and proteomes reveal distinct genetic control of gene expression variation in yeast., bioRxiv, PMID 37781592
PXD044517 no publication (from MassIVE)Dataset title: Identification of LMAN1 and SURF4 dependent secretory cargoesPossible reference: Tang, VT. et al. (2023) Identification of LMAN1 and SURF4 dependent secretory cargoes., bioRxiv, PMID 37066360
PXD044499 Dataset with its publication pending (from iProX)Dataset title: Irisin reduces Amyloid-β by inducing the release of neprilysin from astrocytes following downregulation of ERK-STAT3 signalingPossible reference: Kim, E. et al. (2023) Irisin reduces amyloid-β by inducing the release of neprilysin from astrocytes following downregulation of ERK-STAT3 signaling., Neuron, PMID 37689059
PXD044498 Dataset with its publication pending (from jPOST)Dataset title: Integration of shoot-derived polypeptide signals by root TGA transcription factors is essential for survival under fluctuating nitrogen environmentsPossible reference: Kobayashi, R. et al. (2024) Integration of shoot-derived polypeptide signals by root TGA transcription factors is essential for survival under fluctuating nitrogen environments., Nat Commun, PMID 39179528
PXD044470 Dataset with its publication pending (from PRIDE)Dataset title: The selfish yeast plasmid exploits a SWI/SNF-type chromatin remodeling complex for hitchhiking on chromosomes and ensuring high-fidelity propagationPossible reference: Ma, CH. et al. (2023) The selfish yeast plasmid exploits a SWI/SNF-type chromatin remodeling complex for hitchhiking on chromosomes and ensuring high-fidelity propagation., PLoS Genet, PMID 37812641
PXD044456 no publication (from MassIVE)Dataset title: Tissue-specific proteome profile analysis reveals regulatory and stress responsive networks in passion fruit during storagePossible reference: Garcia, E. et al. (2024) Tissue-specific proteome profile analysis reveals regulatory and stress responsive networks in passion fruit during storage., Sci Rep, PMID 38346991
PXD044412 Dataset with its publication pending (from PRIDE)Dataset title: Metabolite interactions in the bacterial Calvin cycle and implications for flux regulationPossible reference: Sporre, E. et al. (2023) Metabolite interactions in the bacterial Calvin cycle and implications for flux regulation., Commun Biol, PMID 37723200
PXD044410 Dataset with its publication pending (from PRIDE)Dataset title: UBE2D3 facilitates NHEJ by orchestrating ATM signalling through multi-level control of RNF168Possible reference: Yalçin, Z. et al. (2024) UBE2D3 facilitates NHEJ by orchestrating ATM signalling through multi-level control of RNF168., Nat Commun, PMID 38866770
PXD044408 Dataset with its publication pending (from PRIDE)Dataset title: In planta expression of human polyQ-expanded huntingtin fragment reveals mechanisms to prevent disease-related protein aggregation.Possible reference: Llamas, E. et al. (2023) In planta expression of human polyQ-expanded huntingtin fragment reveals mechanisms to prevent disease-related protein aggregation., Nat Aging, PMID 37783816
PXD044395 Dataset with its publication pending (from PRIDE)Dataset title: BV-2 cells treated with different nanoparticlesPossible reference: Gorojod, RM. et al. (2019) Nanohydroxyapatite Exerts Cytotoxic Effects and Prevents Cellular Proliferation and Migration in Glioma Cells., Toxicol Sci, PMID 30649537
PXD044382 Dataset with its publication pending (from PRIDE)Dataset title: Non-canonical function of histone methyltransferase G9a in the translational regulation of chronic inflammationPossible reference: Muneer, A. et al. (2023) Non-canonical function of histone methyltransferase G9a in the translational regulation of chronic inflammation., Cell Chem Biol, PMID 37858336
PXD044372 Dataset with its publication pending (from iProX)Dataset title: Proteomics coupled transcriptomics reveals Slc34a1 and Slc34a3 downregulation as potential features of nephrotoxin-induced acute kidney injuryPossible reference: Zhang, J. et al. (2024) Proteomics coupled transcriptomics reveals Slc34a1 and Slc34a3 downregulation as potential features of nephrotoxin-induced acute kidney injury., J Proteomics, PMID 38782357
PXD044360 Dataset with its publication pending (from PRIDE)Dataset title: AMPK activator 991 specifically activates SnRK1 and thereby affects seed germination in ricePossible reference: Hu, Y. et al. (2024) AMPK activator 991 specifically activates SnRK1 and thereby affects seed germination in rice., J Exp Bot, PMID 38465908
PXD044343 Dataset with its publication pending (from PRIDE)Dataset title: Proteome analysis in the TcMAC21 mouse model of Down syndromePossible reference: Kurabayashi, N. et al. (2023) Neocortical neuronal production and maturation defects in the TcMAC21 mouse model of Down syndrome., iScience, PMID 38025769
PXD044337 Dataset with its publication pending (from PRIDE)Dataset title: Inducible degradation-coupled phosphoproteomics identifies PP2A-Rts1 as a novel eisosome regulatorPossible reference: DeMarco, AG. et al. (2023) Inducible degradation-coupled phosphoproteomics identifies PP2ARts1 as a novel eisosome regulator., bioRxiv, PMID 37961087
PXD044313 no publication (from MassIVE)Dataset title: Quantitative proteomic profiling of HCC1954 cells treated with a CDK12 degraderPossible reference: Kuchukulla, RR. et al. (2024) Identification of a novel potent CDK inhibitor degrading cyclinK with a superb activity to reverse trastuzumab-resistance in HER2-positive breast cancer in vivo., Eur J Med Chem, PMID 38061230
PXD044293 Dataset with its publication pending (from PRIDE)Dataset title: In vitro and In vivo Antimicrobial Potential of Lithium Complex against Multi Drug Resistant Acinetobacter baumanniiPossible reference: Zehra, M. et al. (2023) In vitro and in vivo antimicrobial potential of lithium complex against multi-drug resistant Acinetobacter baumannii., Microbiol Spectr, PMID 37861330
PXD044287 Dataset with its publication pending (from PRIDE)Dataset title: Targeting IRE1α reprograms the tumor microenvironment and enhances anti-tumor immunity in prostate cancerPossible reference: Unal, B. et al. (2024) Targeting IRE1α reprograms the tumor microenvironment and enhances anti-tumor immunity in prostate cancer., Nat Commun, PMID 39406723
PXD044275 Dataset with its publication pending (from PRIDE)Dataset title: Protein interaction map of APOBEC3 enzyme familyPossible reference: Duan, S. et al. (2020) A novel HIV-1 inhibitor that blocks viral replication and rescues APOBEC3s by interrupting vif/CBFβ interaction., J Biol Chem, PMID 32817167
PXD044264 Dataset with its publication pending (from PRIDE)Dataset title: Interpreting biologically informed neural networks for enhanced proteomic biomarker discovery and pathway analysisPossible reference: Srivastava, AK. et al. (2016) Human genome meeting 2016 : Houston, TX, USA. 28 February - 2 March 2016., Hum Genomics, PMID 27294413
PXD044263 Dataset with its publication pending (from PRIDE)Dataset title: Comparative proteomic identification of Rab GTPase interactors in ArabidopsisPossible reference: Persyn, F. et al. (2024) A Nitrogen-specific Interactome Analysis Sheds Light on the Role of the SnRK1 and TOR Kinases in Plant Nitrogen Signaling., Mol Cell Proteomics, PMID 39307424
PXD044239 Dataset with its publication pending (from PRIDE)Dataset title: Parallel proteomics and phosphoproteomics defines starvation signal specific processes in cell quiescencePossible reference: Sun, S. et al. (2023) Parallel proteomics and phosphoproteomics defines starvation signal specific processes in cell quiescence., bioRxiv, PMID 37577636
PXD044211 Dataset with its publication pending (from iProX)Dataset title: DARTS proteomic response of S. aureus to Baohuoside IPossible reference: Wen, Z. et al. (2024) Baohuoside I inhibits virulence of multidrug-resistant Staphylococcus aureus by targeting the transcription Staphylococcus accessory regulator factor SarZ., Phytomedicine, PMID 38810547
PXD044207 Dataset with its publication pending (from iProX)Dataset title: Proteomic response of S. aureus with baohuoside IPossible reference: Wen, Z. et al. (2024) Baohuoside I inhibits virulence of multidrug-resistant Staphylococcus aureus by targeting the transcription Staphylococcus accessory regulator factor SarZ., Phytomedicine, PMID 38810547
PXD044190 Dataset with its publication pending (from PRIDE)Dataset title: A phylogenetic approach to explore the Aspergillus fumigatus conidial surfome and its role in pathogenesisPossible reference: Goldman, G. et al. (2023) A phylogenetic approach to explore the Aspergillus fumigatus conidial surface-associated proteome and its role in pathogenesis., Res Sq, PMID 37790311
PXD044180 Dataset with its publication pending (from PRIDE)Dataset title: FAM111A regulates replication origin activation and cell fitnessPossible reference: Rios-Szwed, DO. et al. (2023) FAM111A regulates replication origin activation and cell fitness., Life Sci Alliance, PMID 37793778
PXD044179 no publication (from MassIVE)Dataset title: A promiscuous mechanism to phase separate eukaryotic carbon fixationPossible reference: Barrett, J. et al. (2024) A promiscuous mechanism to phase separate eukaryotic carbon fixation in the green lineage., Nat Plants, PMID 39384944
PXD044176 Dataset with its publication pending (from PRIDE)Dataset title: 1 Enhanced assembly of bacteriophage T7 produced in cell-free reactions under simulated microgravityPossible reference: Lehr, FX. et al. (2024) Enhanced assembly of bacteriophage T7 produced in cell-free reactions under simulated microgravity., NPJ Microgravity, PMID 38491014
PXD044159 Dataset with its publication pending (from PRIDE)Dataset title: CD98hc is a target for brain delivery of biotherapeuticsPossible reference: Chew, KS. et al. (2023) CD98hc is a target for brain delivery of biotherapeutics., Nat Commun, PMID 37598178
PXD044157 Dataset with its publication pending (from PRIDE)Dataset title: ProteoMixture: A Cell Deconvolution Tool for Bulk Tissue Proteomics DataPossible reference: Teng, PN. et al. (2024) ProteoMixture: A cell type deconvolution tool for bulk tissue proteomic data., iScience, PMID 38439970
PXD044153 Dataset with its publication pending (from PRIDE)Dataset title: Biofilm matrix regulation by Candida glabrata Zap1 under acidic conditions: transcriptomic and proteomic analysesPossible reference: Gonçalves, B. et al. (2024) Biofilm matrix regulation by Candida glabrata Zap1 under acidic conditions: transcriptomic and proteomic analyses., Microbiol Spectr, PMID 39494883
PXD044145 Dataset with its publication pending (from PRIDE)Dataset title: In planta expression of human polyQ-expanded huntingtin fragment reveals mechanisms to prevent disease-related protein aggregation.Possible reference: Llamas, E. et al. (2023) In planta expression of human polyQ-expanded huntingtin fragment reveals mechanisms to prevent disease-related protein aggregation., Nat Aging, PMID 37783816
PXD044144 Dataset with its publication pending (from PRIDE)Dataset title: Comprehensive proteomic analysis of JC polyomavirus-infected human astrocytes and their extracellular vesiclesPossible reference: Oberholster, L. et al. (2023) Comprehensive proteomic analysis of JC polyomavirus-infected human astrocytes and their extracellular vesicles., Microbiol Spectr, PMID 37815349
PXD044142 Dataset with its publication pending (from PanoramaPublic)Dataset title: Regulation of adaptive growth decisions via phosphorylation of the TRAPPII complex in Arabidopsis.Possible reference: Wiese, C. et al. (2023) Regulation of adaptive growth decisions via phosphorylation of the TRAPPII complex in Arabidopsis., bioRxiv, PMID 37986925
PXD044141 no publication (from MassIVE)Dataset title: Cancer-associated Histone H3 N-terminal arginine mutations disrupt PRC2 activity and impair differentiationPossible reference: Nacev, BA. et al. (2024) Cancer-associated Histone H3 N-terminal arginine mutations disrupt PRC2 activity and impair differentiation., Nat Commun, PMID 38886411
PXD044136 Dataset with its publication pending (from PRIDE)Dataset title: Pteromalus puparum larval salivaPossible reference: Shi, J. et al. (2022) The larval saliva of an endoparasitic wasp, Pteromalus puparum, suppresses host immunity., J Insect Physiol, PMID 35878702
PXD044126 Dataset with its publication pending (from PRIDE)Dataset title: Degron mimicry modulates selective substrate recruitment by CTLH E3 supramolecular assemblyPossible reference: Gottemukkala, KV. et al. (2024) Non-canonical substrate recognition by the human WDR26-CTLH E3 ligase regulates prodrug metabolism., Mol Cell, PMID 38759627
PXD044113 no publication (from MassIVE)Dataset title: The maintenance of oocytes in the mammalian ovary involves extreme protein longevity Possible reference: Harasimov, K. et al. (2024) The maintenance of oocytes in the mammalian ovary involves extreme protein longevity., Nat Cell Biol, PMID 38902423
PXD044004 Dataset with its publication pending (from PRIDE)Dataset title: Skeletal muscle cell protein dysregulation highlights the pathogenesis mechanism of myopathy-associated p97/VCP R155H mutationsPossible reference: Luzzi, A. et al. (2023) Skeletal muscle cell protein dysregulation highlights the pathogenesis mechanism of myopathy-associated p97/VCP R155H mutations., Front Neurol, PMID 37602234
PXD043645 Dataset with its publication pending (from PRIDE)Dataset title: PRPF8-mediated dysregulation of hBrr2 helicase disrupts human spliceosome kinetics and 5´-splice-site selection causing tissue-specific defectsPossible reference: Atkinson, R. et al. (2024) PRPF8-mediated dysregulation of hBrr2 helicase disrupts human spliceosome kinetics and 5´-splice-site selection causing tissue-specific defects., Nat Commun, PMID 38605034
PXD043560 Dataset with its publication pending (from PRIDE)Dataset title: A RIPK1-specific PROTAC degrader achieves potent antitumor activity by enhancing immunogenic cell deathPossible reference: Mannion, J. et al. (2024) A RIPK1-specific PROTAC degrader achieves potent antitumor activity by enhancing immunogenic cell death., Immunity, PMID 38788712
PXD043482 Dataset with its publication pending (from PRIDE)Dataset title: A widespread family of oxidoreductive sulfoquinovosidases at the gateway to sulfoquinovose catabolismPossible reference: Kaur, A. et al. (2023) Widespread Family of NAD+-Dependent Sulfoquinovosidases at the Gateway to Sulfoquinovose Catabolism., J Am Chem Soc, PMID 38100472
PXD043367 Dataset with its publication pending (from PRIDE)Dataset title: The chromatin associated lncREST interacts with the replication fork to ensure effective replication stress responsePossible reference: Statello, L. et al. (2024) The chromatin-associated lncREST ensures effective replication stress response by promoting the assembly of fork signaling factors., Nat Commun, PMID 38302450
PXD042905 Dataset with its publication pending (from PRIDE)Dataset title: The assembly of the Mitochondrial Complex I Assembly complex uncovers a redox pathway coordinationPossible reference: McGregor, L. et al. (2023) The assembly of the Mitochondrial Complex I Assembly complex uncovers a redox pathway coordination., Nat Commun, PMID 38086790
PXD042855 Dataset with its publication pending (from PRIDE)Dataset title: The kinesin Kif21b regulates radial migration of cortical projection neurons through a non-canonical function on actin cytoskeleton.Possible reference: Rivera Alvarez, J. et al. (2023) The kinesin Kif21b regulates radial migration of cortical projection neurons through a non-canonical function on actin cytoskeleton., Cell Rep, PMID 37418324
PXD042803 no publication (from MassIVE)Dataset title: The Effect of Tamoxifen on Proteome Expression During in vitro Myogenesis in Murine Skeletal Muscle C2C12 Cells Possible reference: Morris, EA. et al. (2023) Effect of Tamoxifen on Proteome Expression during In Vitro Myogenesis in Murine Skeletal Muscle C2C12 Cells., J Proteome Res, PMID 37552804
PXD042706 Dataset with its publication pending (from PRIDE)Dataset title: Ubiquitin-specific proximity labeling for the identification of E3 ubiquitin ligase substratesPossible reference: Huang, HT. et al. (2024) Ubiquitin-specific proximity labeling for the identification of E3 ligase substrates., Nat Chem Biol, PMID 38514884
PXD042358 Dataset with its publication pending (from PRIDE)Dataset title: Identification of membrane proteins regulated by ADAM15 by SUSPECS proteomicsPossible reference: Calligaris, M. et al. (2023) Identification of membrane proteins regulated by ADAM15 by SUSPECS proteomics., Front Mol Biosci, PMID 37388246
PXD042124 Dataset with its publication pending (from jPOST)Dataset title: Helicobacter pylori cagA+ induces cancer-associated fibroblasts proliferation and migration in vitroPossible reference: Gonciarz, W. et al. (2019) The effect of Helicobacter pylori infection and different H. pylori components on the proliferation and apoptosis of gastric epithelial cells and fibroblasts., PLoS One, PMID 31390383
PXD041928 no publication (from MassIVE)Dataset title: A region-resolved proteomic map of the human brain enabled by high-throughput proteomicsPossible reference: Tüshaus, J. et al. (2023) A region-resolved proteomic map of the human brain enabled by high-throughput proteomics., EMBO J, PMID 37916885
PXD041301 Dataset with its publication pending (from PRIDE)Dataset title: The proteome of bacterial membrane vesicles in Escherichia coli - a time course comparison study in two different mediaPossible reference: Yu, MSC. et al. (2024) The proteome of bacterial membrane vesicles in Escherichia coli-a time course comparison study in two different media., Front Microbiol, PMID 38510998
PXD041197 Dataset with its publication pending (from PRIDE)Dataset title: Mtfp1 ablation enhances respiration and protects against hepatic steatosisPossible reference: Patitucci, C. et al. (2023) Mtfp1 ablation enhances mitochondrial respiration and protects against hepatic steatosis., Nat Commun, PMID 38123539
PXD040676 Dataset with its publication pending (from PRIDE)Dataset title: PDHE1α, PARylation, Acetyl-CoA, Acetylation, Histones, DNA damage repairPossible reference: Zhang, J. et al. (2023) PARylated PDHE1α generates acetyl-CoA for local chromatin acetylation and DNA damage repair., Nat Struct Mol Biol, PMID 37735618
PXD040469 Dataset with its publication pending (from jPOST)Dataset title: ATR phosphoproteomics screening using berzosertib and gartisertibPossible reference: Jadav, R. et al. (2024) Chemo-Phosphoproteomic Profiling with ATR Inhibitors Berzosertib and Gartisertib Uncovers New Biomarkers and DNA Damage Response Regulators., Mol Cell Proteomics, PMID 38880245
PXD040409 Dataset with its publication pending (from iProX)Dataset title: BmATAD3A mediates mitochondrial ribosomal protein expression to maintain the mitochondrial energy metabolism of the silkworm Bombyx moriPossible reference: Dong, Z. et al. (2025) BmATAD3A mediates mitochondrial ribosomal protein expression to maintain the mitochondrial energy metabolism of the silkworm, Bombyx mori., Insect Sci, PMID 38616538
PXD040207 Dataset with its publication pending (from PRIDE)Dataset title: Cell type-specific control of secondary cell wall formation by Musashi-type translational regulators in ArabidopsisPossible reference: Kairouani, A. et al. (2023) Cell-type-specific control of secondary cell wall formation by Musashi-type translational regulators in Arabidopsis., Elife, PMID 37773033
PXD039993 Dataset with its publication pending (from PRIDE)Dataset title: Charge site manipulation to enhance top-down fragmentation efficiencyPossible reference: Habeck, T. et al. (2024) Charge site manipulation to enhance top-down fragmentation efficiency., Proteomics, PMID 37043727
PXD039932 no publication (from MassIVE)Dataset title: Vibrio natriegens genome-scale metabolic modelling (GSMM) reveals insights into halophilic adaptations and resource allocationPossible reference: Coppens, L. et al. (2023) Vibrio natriegens genome-scale modeling reveals insights into halophilic adaptations and resource allocation., Mol Syst Biol, PMID 36847213
PXD039804 Dataset with its publication pending (from PRIDE)Dataset title: Translatome analyses by bio-orthogonal non-canonical amino acid labeling reveal that MR1-activated MAIT cells induce an M1 phenotype and antiviral programming in antigen-presenting monocytes_bicellular2Possible reference: Jakob, J. et al. (2023) Translatome analyses by bio-orthogonal non-canonical amino acid labeling reveal that MR1-activated MAIT cells induce an M1 phenotype and antiviral programming in antigen-presenting monocytes., Front Immunol, PMID 36875139
PXD039645 Dataset with its publication pending (from PRIDE)Dataset title: Quantitative proteomic analysis of human serum using tandem mass tags to predict cardiovascular risks in patients with psoriasisPossible reference: Kim, NY. et al. (2023) Quantitative proteomic analysis of human serum using tandem mass tags to predict cardiovascular risks in patients with psoriasis., Sci Rep, PMID 36804462
PXD039642 Dataset with its publication pending (from jPOST)Dataset title: Human Hair Shaft Proteome profiling using label free proteomics Possible reference: Milan, JA. et al. (2019) Comparison of protein expression levels and proteomically-inferred genotypes using human hair from different body sites., Forensic Sci Int Genet, PMID 30939338
PXD039288 Dataset with its publication pending (from PRIDE)Dataset title: Oxygen-sensing through ERFVII action and modulation in Arabidopsis thalianaPossible reference: Zubrycka, A. et al. (2023) ERFVII action and modulation through oxygen-sensing in Arabidopsis thaliana., Nat Commun, PMID 37537157
PXD039090 no publication (from MassIVE)Dataset title: Cellular population dynamics shape the route to human pluripotency.Possible reference: Panariello, F. et al. (2023) Cellular population dynamics shape the route to human pluripotency., Nat Commun, PMID 37198156
PXD039047 Dataset with its publication pending (from jPOST)Dataset title: Serum Proteomic Profile of Wild Stump-tailed Macaques (Macaca arctoides) Infected with Malaria Parasites in Thailand Possible reference: Ruengket, P. et al. (2023) Serum proteomic profile of wild stump-tailed macaques (Macaca arctoides) infected with malaria parasites in Thailand., PLoS One, PMID 37910477
PXD039010 Dataset with its publication pending (from PRIDE)Dataset title: A Spatiotemporal Notch Interaction Map from Membrane to NucleusPossible reference: Martin, AP. et al. (2023) A spatiotemporal Notch interaction map from plasma membrane to nucleus., Sci Signal, PMID 37527352
PXD038906 Dataset with its publication pending (from PRIDE)Dataset title: Profiling of the human intestinal microbiome and bile acids under physiologic conditions using an ingestible sampling devicePossible reference: Shalon, D. et al. (2023) Profiling the human intestinal environment under physiological conditions., Nature, PMID 37165188
PXD038865 no publication (from MassIVE)Dataset title: Organelle proteomic profiling reveals lysosomal heterogeneity in association with longevityPossible reference: Yu, Y. et al. (2024) Organelle proteomic profiling reveals lysosomal heterogeneity in association with longevity., Elife, PMID 38240316
PXD038783 Dataset with its publication pending (from PRIDE)Dataset title: A Universal GlycoDesign for Lysosomal Replacement Enzymes to Improve Circulation Time and BiodistributionPossible reference: Chen, YH. et al. (2023) A universal GlycoDesign for lysosomal replacement enzymes to improve circulation time and biodistribution., Front Bioeng Biotechnol, PMID 36911201
PXD038658 Dataset with its publication pending (from PRIDE)Dataset title: Targeted cross-linker delivery for in situ mapping of protein conformations and interactions in mitochondriaPossible reference: Chen, Y. et al. (2023) Targeted cross-linker delivery for the in situ mapping of protein conformations and interactions in mitochondria., Nat Commun, PMID 37391416
PXD038655 Dataset with its publication pending (from PRIDE)Dataset title: K6-Linked Ubiquitylation Marks Formaldehyde-Induced RNA–Protein Crosslinks for ResolutionPossible reference: Suryo Rahmanto, A. et al. (2023) K6-linked ubiquitylation marks formaldehyde-induced RNA-protein crosslinks for resolution., Mol Cell, PMID 37951215
PXD038364 Dataset with its publication pending (from PRIDE)Dataset title: Monitoring α-synuclein ubiquitination dynamics reveals key endosomal effectors mediating its trafficking and degradationPossible reference: Zenko, D. et al. (2023) Monitoring α-synuclein ubiquitination dynamics reveals key endosomal effectors mediating its trafficking and degradation., Sci Adv, PMID 37315142
PXD038314 Dataset with its publication pending (from PRIDE)Dataset title: IQGAP1 mediates the communication between the nucleus and the mitochondria via NDUFS4 alternative splicingPossible reference: Papadaki, V. et al. (2023) IQGAP1 mediates the communication between the nucleus and the mitochondria via NDUFS4 alternative splicing., NAR Cancer, PMID 37636315
PXD038264 Dataset with its publication pending (from PRIDE)Dataset title: The role of endosomal protein DENND10/FAM45A in extracellular vesicle release and cancer cell migrationPossible reference: Sun, S. et al. (2024) Endosomal protein DENND10/FAM45A integrates extracellular vesicle release with cancer cell migration., BMC Biol, PMID 38987765
PXD038208 Dataset with its publication pending (from iProX)Dataset title: Screening of SPOP interacting proteins in hepatocellular carcinomaPossible reference: Deng, Y. et al. (2024) SPOP point mutations regulate substrate preference and affect its function., Cell Death Dis, PMID 38409107
PXD038157 Dataset with its publication pending (from PRIDE)Dataset title: Shuffled ATG8 interacting motifs form an ancestral bridge between UFMylation and C53-mediated autophagyPossible reference: Picchianti, L. et al. (2023) Shuffled ATG8 interacting motifs form an ancestral bridge between UFMylation and autophagy., EMBO J, PMID 36762703
PXD038063 Dataset with its publication pending (from PRIDE)Dataset title: Mass spectrometry analysis of proteins interacting with STING mutantsPossible reference: Sun, Y. et al. (2020) Mycobacterium tuberculosis MmsA (Rv0753c) Interacts with STING and Blunts the Type I Interferon Response., mBio, PMID 33262262
PXD037779 no publication (from MassIVE)Dataset title: MHC Immunopeptidome profiling of human coronavirus OC43-infected cells identifies CD4 T cell epitopes specific to seasonal coronaviruses and epitopes cross-reactive with SARS-CoV-2Possible reference: Becerra-Artiles, A. et al. (2022) Immunopeptidome profiling of human coronavirus OC43-infected cells identifies CD4 T cell epitopes specific to seasonal coronaviruses or cross-reactive with SARS-CoV-2., bioRxiv, PMID 36482973
PXD037687 Dataset with its publication pending (from jPOST)Dataset title: A multiplexed microflow LC-MS/MS-PRM assay for serologic quantification of IgG N- and HPX O- glycoforms in liver fibrosisPossible reference: Panigrahi, A. et al. (2023) A multiplexed microflow LC-MS/MS-PRM assay for serologic quantification of IgG N- and HPX O- glycoforms in liver fibrosis., Sci Rep, PMID 36635317
PXD037657 Dataset with its publication pending (from PRIDE)Dataset title: Lipid metabolism reprogramming and Trastuzumab resistance in Breast cancer cell lines overexpressing the ERBB2 membrane receptor.Possible reference: Cortese, K. et al. (2023) Lipid Metabolism Reprogramming and Trastuzumab Resistance in Breast Cancer Cell Lines Overexpressing the ERBB2 Membrane Receptor., Membranes (Basel), PMID 37367744
PXD037514 no publication (from MassIVE)Dataset title: Comprehensive and quantitative analysis of the changes in proteomic and phosphoproteomic profiles during stimulation and repression of steroidogenesis in MA-10 Leydig cells.Possible reference: Demmouche, ZB. et al. (2022) Comprehensive and Quantitative Analysis of the Changes in Proteomic and Phosphoproteomic Profiles during Stimulation and Repression of Steroidogenesis in MA-10 Leydig Cells., Int J Mol Sci, PMID 36361638
PXD037346 Dataset with its publication pending (from PRIDE)Dataset title: A proteomic analysis shows stimulation of light reactions and inhibition of Calvin cycle in skin chloroplasts of ripe red grape berriesPossible reference: Teixeira, A. et al. (2022) A proteomic analysis shows the stimulation of light reactions and inhibition of the Calvin cycle in the skin chloroplasts of ripe red grape berries., Front Plant Sci, PMID 36388544
PXD037154 Dataset with its publication pending (from PRIDE)Dataset title: PARP1 proximity proteomics reveals interaction partners at stressed replication forksPossible reference: Mosler, T. et al. (2022) PARP1 proximity proteomics reveals interaction partners at stressed replication forks., Nucleic Acids Res, PMID 36350633
PXD037140 Dataset with its publication pending (from PRIDE)Dataset title: H11-induced immune protection is predominantly linked to N-glycan moietiesPossible reference: Wang, C. et al. (2022) H11-induced immunoprotection is predominantly linked to N-glycan moieties during Haemonchus contortus infection., Front Immunol, PMID 36405717
PXD037077 no publication (from MassIVE)Dataset title: Cell State Dependent Effects of Bmal1 on Melanoma Immunity and TumorigenicityPossible reference: Zhang, X. et al. (2024) Cell state dependent effects of Bmal1 on melanoma immunity and tumorigenicity., Nat Commun, PMID 38245503
PXD037002 Dataset with its publication pending (from PRIDE)Dataset title: Integrated Proteomic and Metabolomic Profiling of Urine of Renal Anemia Patients Uncovers Molecular Mechanisms of RoxadustatPossible reference: You, X. et al. (2023) Integrated proteomic and metabolomic profiling of urine of renal anemia patients uncovers the molecular mechanisms of roxadustat., Mol Omics, PMID 37039271
PXD036982 Dataset with its publication pending (from PRIDE)Dataset title: All-in-One Digital Microfluidics Pipeline for Proteomic Sample Preparation and AnalysisPossible reference: Peng, J. et al. (2023) All-in-One digital microfluidics pipeline for proteomic sample preparation and analysis., Chem Sci, PMID 36937585
PXD036859 Dataset with its publication pending (from PRIDE)Dataset title: Production and properties of adhesin-free gingipain proteinase RgpAPossible reference: Mahmud, ASM. et al. (2023) Production and properties of adhesin-free gingipain proteinase RgpA., Sci Rep, PMID 37402780
PXD036459 Dataset with its publication pending (from iProX)Dataset title: The proteomics of Coreius guichenotiPossible reference: Duan, Y. et al. (2022) Studies on the molecular level changes and potential resistance mechanism of Coreius guichenoti under temperature stimulation., Front Genet, PMID 36263436
PXD036417 Dataset with its publication pending (from PRIDE)Dataset title: Counterintuitive structural and functional effects due to naturally-occurring mutations targeting the active site of the disease-associated NQO1 enzymePossible reference: Pacheco-García, JL. et al. (2023) Counterintuitive structural and functional effects due to naturally occurring mutations targeting the active site of the disease-associated NQO1 enzyme., FEBS J, PMID 36378023
PXD036283 Dataset with its publication pending (from PRIDE)Dataset title: Repurposing of Amisulpride, a known antipsychotic drug, to target synovial fibroblasts activation in arthritis.Possible reference: Papadopoulou, D. et al. (2023) Repurposing the antipsychotic drug amisulpride for targeting synovial fibroblast activation in arthritis., JCI Insight, PMID 37014697
PXD036208 Dataset with its publication pending (from iProX)Dataset title: Proteomic and metabonomic analysis uncovering Enterovirus A71 reprogramming host cell metabolic pathwayPossible reference: Shi, H. et al. (2023) Proteomic and metabonomic analysis uncovering Enterovirus A71 reprogramming host cell metabolic pathway., Proteomics, PMID 36254857
PXD036161 Dataset with its publication pending (from PRIDE)Dataset title: High-throughput proteomics of the 26 medically most important elapids and vipers from sub-Saharan AfricaPossible reference: Nguyen, GTT. et al. (2022) High-throughput proteomics and in vitro functional characterization of the 26 medically most important elapids and vipers from sub-Saharan Africa., Gigascience, PMID 36509548
PXD036121 Dataset with its publication pending (from iProX)Dataset title: Dual-species proteomics and targeted intervention of animal-pathogen interactionsPossible reference: Liu, YS. et al. (2024) Dual-species proteomics and targeted intervention of animal-pathogen interactions., J Adv Res, PMID 39233003
PXD036106 Dataset with its publication pending (from PRIDE)Dataset title: Extended DNA threading through a dual-engine motor module in the activating signal co-integrator complexPossible reference: Jia, J. et al. (2023) Extended DNA threading through a dual-engine motor module of the activating signal co-integrator 1 complex., Nat Commun, PMID 37019967
PXD036095 Dataset with its publication pending (from PRIDE)Dataset title: Putative N-glycoprotein markers of MCF-7/ADR cancer stem cells from N-glycoproteomics characterization of the whole cell lysatePossible reference: Yang, H. et al. (2021) Putative N-glycoprotein markers of MCF-7/ADR cancer stem cells from N-glycoproteomics characterization of the whole cell lysate., Talanta, PMID 34074422
PXD036088 no publication (from PanoramaPublic)Dataset title: Dynamic acylome reveals metabolite driven modifications in Syntrophomonas wolfeiPossible reference: Fu, JY. et al. (2022) Dynamic acylome reveals metabolite driven modifications in Syntrophomonas wolfei., Front Microbiol, PMID 36419437
PXD035906 Dataset with its publication pending (from jPOST)Dataset title: Serum peptidome profiles in metastatic and non-metastatic feline mammary carcinomaPossible reference: Paphussaro, W. et al. (2024) Analysis of serum peptidome profiles of non-metastatic and metastatic feline mammary carcinoma using liquid chromatography-tandem mass spectrometry., BMC Vet Res, PMID 38951817
PXD035904 no publication (from MassIVE)Dataset title: Distinct Core Glycan and O-Glycoform Utilization of SARS-CoV-2 Omicron Variant Spike Protein RBD Revealed by Top-Down Mass SpectrometryPossible reference: Roberts, DS. et al. (2022) Distinct Core Glycan and O-Glycoform Utilization of SARS-CoV-2 Omicron Variant Spike Protein RBD Revealed by Top-Down Mass Spectrometry., bioRxiv, PMID 35475171
PXD035896 Dataset with its publication pending (from PRIDE)Dataset title: Quantitative proteome and phosphoproteome datasets of DNA replication and mitosis in Saccharomyces cerevisiaePossible reference: Rossio, V. et al. (2022) Quantitative proteome and phosphoproteome datasets of DNA replication and mitosis in Saccharomyces cerevisiae., Data Brief, PMID 36425962
PXD035889 Dataset with its publication pending (from PRIDE)Dataset title: Deficiency of the frontotemporal dementia gene GRN results in gangliosidosisPossible reference: Boland, S. et al. (2022) Deficiency of the frontotemporal dementia gene GRN results in gangliosidosis., Nat Commun, PMID 36207292
PXD035871 Dataset with its publication pending (from PRIDE)Dataset title: Complexome Profiling of the thylakoid proteome from Arabidopsis thalianaPossible reference: Schröder, L. et al. (2022) The photosynthesis apparatus of European mistletoe (Viscum album)., Plant Physiol, PMID 35976139
PXD035835 Dataset with its publication pending (from PRIDE)Dataset title: Integrated proteomics and metabolomics analysis of rice leaves in response to rice straw returnPossible reference: Yan, S. et al. (2022) Integrated proteomics and metabolomics analysis of rice leaves in response to rice straw return., Front Plant Sci, PMID 36176680
PXD035828 Dataset with its publication pending (from jPOST)Dataset title: Spatially resolved profiling of protein conformation and interactions by biocompatible chemical cross-linking in living cellsPossible reference: Zhao, L. et al. (2024) Spatially resolved profiling of protein conformation and interactions by biocompatible chemical cross-linking in living cells., Nat Commun, PMID 39333085
PXD035827 no publication (from MassIVE)Dataset title: Proteome phenotypes discriminate growing location and malting traits in field-grown barleyPossible reference: Bahmani, M. et al. (2022) Proteome Phenotypes Discriminate the Growing Location and Malting Traits in Field-Grown Barley., J Agric Food Chem, PMID 35981222
PXD035818 Dataset with its publication pending (from PRIDE)Dataset title: Characterization of Phosphorylation-dependent Antibody Binding to Cancer-mutated Linkers of C2H2 Zinc Finger Proteins by Intact Transition Epitope Mapping - Thermodynamic Weak-force Order Analysis.Possible reference: Scherf, M. et al. (2023) Characterization of Phosphorylation-Dependent Antibody Binding to Cancer-Mutated Linkers of C2H2 Zinc Finger Proteins by Intact Transition Epitope Mapping-Thermodynamic Weak-Force Order Analysis., J Am Soc Mass Spectrom, PMID 36656134
PXD035780 Dataset with its publication pending (from PRIDE)Dataset title: Analysis of human and microbial salivary proteomes in children offers insights on the molecular pathogenesis of molar-incisor hypomineralizationPossible reference: Pappa, E. et al. (2022) Analysis of Human and Microbial Salivary Proteomes in Children Offers Insights on the Molecular Pathogenesis of Molar-Incisor Hypomineralization., Biomedicines, PMID 36140166
PXD035774 Dataset with its publication pending (from PRIDE)Dataset title: Evaluation of binding preference of different microtubes for nanoproteomics sample preparationPossible reference: Zhang, Z. et al. (2023) Evaluation of the Binding Preference of Microtubes for Nanoproteomics Sample Preparation., J Proteome Res, PMID 36455010
PXD035748 Dataset with its publication pending (from PRIDE)Dataset title: DNMT and HDAC inhibition induces immunogenic neoantigens from human endogenous retroviral element-derived transcriptsPossible reference: Goyal, A. et al. (2023) DNMT and HDAC inhibition induces immunogenic neoantigens from human endogenous retroviral element-derived transcripts., Nat Commun, PMID 37872136
PXD035731 Dataset with its publication pending (from jPOST)Dataset title: iSDAC: in situ digestion of alcohol-fixed cellsPossible reference: Hatano, A. et al. (2023) In situ digestion of alcohol-fixed cells for quantitative proteomics., J Biochem, PMID 36455924
PXD035719 Dataset with its publication pending (from PRIDE)Dataset title: Mass spectrometry identification of biomarkers in extracellular vesicles from Plasmodium vivax liver hypnozoite infectionsPossible reference: Gualdrón-López, M. et al. (2022) Mass Spectrometry Identification of Biomarkers in Extracellular Vesicles From Plasmodium vivax Liver Hypnozoite Infections., Mol Cell Proteomics, PMID 36030044
PXD035712 Dataset with its publication pending (from PRIDE)Dataset title: Mitochondrial interactome quantitation reveals structural changes in metabolic machinery in the failing murine heartPossible reference: Caudal, A. et al. (2022) Mitochondrial interactome quantitation reveals structural changes in metabolic machinery in the failing murine heart., Nat Cardiovasc Res, PMID 36405497
PXD035696 Dataset with its publication pending (from PRIDE)Dataset title: Distinct transcriptome, translatome, and proteome reprogramming during the oocyte-to-embryo transitionPossible reference: Zhang, H. et al. (2023) Stable maternal proteins underlie distinct transcriptome, translatome, and proteome reprogramming during mouse oocyte-to-embryo transition., Genome Biol, PMID 37443062
PXD035668 Dataset with its publication pending (from PRIDE)Dataset title: Disordered region encodes α-crystallin chaperone activity toward lens client γD-crystallinPossible reference: Woods, CN. et al. (2023) Disordered region encodes α-crystallin chaperone activity toward lens client γD-crystallin., Proc Natl Acad Sci U S A, PMID 36719917
PXD035665 Dataset with its publication pending (from PRIDE)Dataset title: Deep single-shot nanoLCMS proteome profiling with 1500 bar UHPLC system, long fully porous columns, and HRAM MSPossible reference: Zheng, R. et al. (2022) Deep Single-Shot NanoLC-MS Proteome Profiling with a 1500 Bar UHPLC System, Long Fully Porous Columns, and HRAM MS., J Proteome Res, PMID 36068014
PXD035653 Dataset with its publication pending (from PRIDE)Dataset title: Non-enzymatic acetylation inhibits glycolytic enzymes in Escherichia coliPossible reference: Schastnaya, E. et al. (2023) Non-enzymatic acetylation inhibits glycolytic enzymes in Escherichia coli., Cell Rep, PMID 36640332
PXD035636 no publication (from MassIVE)Dataset title: Evaluation of quantification and normalization strategies for phosphoprotein phosphatase affinity proteomics: application to breast cancer signalingPossible reference: Brauer, BL. et al. (2023) Evaluation of Quantification and Normalization Strategies for Phosphoprotein Phosphatase Affinity Proteomics: Application to Breast Cancer Signaling., J Proteome Res, PMID 36448918
PXD035622 Dataset with its publication pending (from PRIDE)Dataset title: Mitochondrial interactome quantitation reveals structural changes in metabolic machinery in the failing murine heartPossible reference: Caudal, A. et al. (2022) Mitochondrial interactome quantitation reveals structural changes in metabolic machinery in the failing murine heart., Nat Cardiovasc Res, PMID 36405497
PXD035597 Dataset with its publication pending (from jPOST)Dataset title: The Liquid Chromatography/Tandem Mass Spectrometry-Based Quantification of Angiotensin PeptidesPossible reference: He, C. et al. (2020) Development of a novel nanoflow liquid chromatography-parallel reaction monitoring mass spectrometry-based method for quantification of angiotensin peptides in HUVEC cultures., PeerJ, PMID 32983648
PXD035587 Dataset with its publication pending (from PRIDE)Dataset title: Unique Ligand and Kinase-Independent Roles of the Insulin Receptor in Regulation of Cell Cycle, Senescence and ApoptosisPossible reference: Nagao, H. et al. (2023) Unique ligand and kinase-independent roles of the insulin receptor in regulation of cell cycle, senescence and apoptosis., Nat Commun, PMID 36599833
PXD035578 Dataset with its publication pending (from PRIDE)Dataset title: Histone chaperone ASF1 mediates H3.3-H4 deposition in ArabidopsisPossible reference: Zhong, Z. et al. (2022) Histone chaperone ASF1 mediates H3.3-H4 deposition in Arabidopsis., Nat Commun, PMID 36379930
PXD035577 Dataset with its publication pending (from PRIDE)Dataset title: Age-related decline in the resistance of mice to bacterial infection and in LPS/TLR4 pathway-dependent neutrophil responsesPossible reference: Hornigold, K. et al. (2022) Age-related decline in the resistance of mice to bacterial infection and in LPS/TLR4 pathway-dependent neutrophil responses., Front Immunol, PMID 36090969
PXD035532 Dataset with its publication pending (from PRIDE)Dataset title: A metabolic map of the DNA damage response identifies PRDX1 in nuclear ROS scavenging and aspartate synthesisPossible reference: Moretton, A. et al. (2023) A metabolic map of the DNA damage response identifies PRDX1 in the control of nuclear ROS scavenging and aspartate availability., Mol Syst Biol, PMID 37259925
PXD035524 no publication (from MassIVE)Dataset title: Temporal Proteomic and Phosphoproteomic Analysis of EV-A71-infected Human CellsPossible reference: Zhao, Y. et al. (2022) Temporal Proteomic and Phosphoproteomic Analysis of EV-A71-Infected Human Cells., J Proteome Res, PMID 36106392
PXD035518 no publication (from MassIVE)Dataset title: Regulation of PaRBOH1-mediated ROS productionPossible reference: Nickolov, K. et al. (2022) Regulation of PaRBOH1-mediated ROS production in Norway spruce by Ca2+ binding and phosphorylation., Front Plant Sci, PMID 36311083
PXD035516 no publication (from MassIVE)Dataset title: Regulation of PaRBOH1-mediated ROS productionPossible reference: Nickolov, K. et al. (2022) Regulation of PaRBOH1-mediated ROS production in Norway spruce by Ca2+ binding and phosphorylation., Front Plant Sci, PMID 36311083
PXD035514 Dataset with its publication pending (from iProX)Dataset title: Clinical characterization and proteomic profiling of lean nonalcoholic fatty liver diseasePossible reference: Jiang, Y. et al. (2023) Clinical characterization and proteomic profiling of lean nonalcoholic fatty liver disease., Front Endocrinol (Lausanne), PMID 38034020
PXD035506 no publication (from MassIVE)Dataset title: Regulation of PaRBOH1-mediated ROS productionPossible reference: Nickolov, K. et al. (2022) Regulation of PaRBOH1-mediated ROS production in Norway spruce by Ca2+ binding and phosphorylation., Front Plant Sci, PMID 36311083
PXD035494 Dataset with its publication pending (from PRIDE)Dataset title: PROTEOMIC ANALYSIS OF URINARY EXTRACELLULAR VESICLES OF KIDNEY TRANSPLANT RECIPIENTS WITH BKV VIRURIA AND VIREMIA.Possible reference: Bruschi, M. et al. (2022) Proteomic analysis of urinary extracellular vesicles of kidney transplant recipients with BKV viruria and viremia: A pilot study., Front Med (Lausanne), PMID 36465937
PXD035482 Dataset with its publication pending (from PRIDE)Dataset title: The Legionella pneumophila effector DenR hijacks host NRas signaling during infectionPossible reference: Lehman, SS. et al. (2024) The Legionella pneumophila effector DenR hijacks the host NRas proto-oncoprotein to downregulate MAPK signaling., Cell Rep, PMID 38568811
PXD035478 Dataset with its publication pending (from PRIDE)Dataset title: Immunization of mice with virus-like vesicles of Kaposi sarcoma-associated herpesvirus reveals a role of ORF4 in complement-mediated neutralizationPossible reference: Lam, AK. et al. (2023) Immunization of Mice with Virus-Like Vesicles of Kaposi Sarcoma-Associated Herpesvirus Reveals a Role for Antibodies Targeting ORF4 in Activating Complement-Mediated Neutralization., J Virol, PMID 36757205
PXD035477 Dataset with its publication pending (from PRIDE)Dataset title: Characterization of the interactome profiling of Mycoplasma DnaK in cancer cell reveals interference with key cellular pathwaysPossible reference: Curreli, S. et al. (2022) Characterization of the interactome profiling of Mycoplasma fermentans DnaK in cancer cells reveals interference with key cellular pathways., Front Microbiol, PMID 36386669
PXD035462 Dataset with its publication pending (from jPOST)Dataset title: Identification of novel kinases of Tau using fluorescence complementation mass spectrometry (FCMS)Possible reference: Kao, DS. et al. (2022) Identification of Novel Kinases of Tau Using Fluorescence Complementation Mass Spectrometry (FCMS)., Mol Cell Proteomics, PMID 36379402
PXD035450 Dataset with its publication pending (from PRIDE)Dataset title: TFEB AND TFE3 DRIVE KIDNEY CYSTOGENESIS AND TUMORIGENESISPossible reference: Di Malta, C. et al. (2023) TFEB and TFE3 drive kidney cystogenesis and tumorigenesis., EMBO Mol Med, PMID 36987696
PXD035448 Dataset with its publication pending (from PRIDE)Dataset title: Tropodithietic acid, a multifunctional antimicrobial, facilitates adaption and colonization of the producer, Phaeobacter piscinae S26Possible reference: Lindqvist, LL. et al. (2023) Tropodithietic Acid, a Multifunctional Antimicrobial, Facilitates Adaption and Colonization of the Producer, Phaeobacter piscinae., mSphere, PMID 36622251
PXD035433 Dataset with its publication pending (from PRIDE)Dataset title: Targeted cross-linker delivery for in situ mapping of protein conformations and interactions in mitochondriaPossible reference: Chen, Y. et al. (2023) Targeted cross-linker delivery for the in situ mapping of protein conformations and interactions in mitochondria., Nat Commun, PMID 37391416
PXD035420 Dataset with its publication pending (from PRIDE)Dataset title: Substrate spectrum of PPM1D in the cellular response to DNA double strand breaksPossible reference: Gräf, JF. et al. (2022) Substrate spectrum of PPM1D in the cellular response to DNA double-strand breaks., iScience, PMID 36060052
PXD035418 Dataset with its publication pending (from PRIDE)Dataset title: Regulation and physiological function of proteins for heat tolerance in cowpea (Vigna unguiculata) genotypes under controlled and field conditionsPossible reference: Selinga, TI. et al. (2022) Regulation and physiological function of proteins for heat tolerance in cowpea (Vigna unguiculata) genotypes under controlled and field conditions., Front Plant Sci, PMID 36072323
PXD035413 Dataset with its publication pending (from PRIDE)Dataset title: Mechanistic insights into RNA surveillance by the canonical poly(A) polymerase Pla1 of the MTREC complexPossible reference: Soni, K. et al. (2023) Mechanistic insights into RNA surveillance by the canonical poly(A) polymerase Pla1 of the MTREC complex., Nat Commun, PMID 36774373
PXD035400 Dataset with its publication pending (from PRIDE)Dataset title: Selective inhibitors of SARM1 targeting an allosteric cysteine in the autoregulatory ARM domainPossible reference: Feldman, HC. et al. (2022) Selective inhibitors of SARM1 targeting an allosteric cysteine in the autoregulatory ARM domain., Proc Natl Acad Sci U S A, PMID 35994671
PXD035399 Dataset with its publication pending (from PRIDE)Dataset title: Analysis of context-specific KRAS-effectors (sub)complexes in Caco-2 cellsPossible reference: Ternet, C. et al. (2023) Analysis of context-specific KRAS-effector (sub)complexes in Caco-2 cells., Life Sci Alliance, PMID 36894174
PXD035398 Dataset with its publication pending (from PRIDE)Dataset title: Diptoindonesin G is a middle domain HSP90 modulator for cancer treatmentPossible reference: Donahue, K. et al. (2022) Diptoindonesin G is a middle domain HSP90 modulator for cancer treatment., J Biol Chem, PMID 36395883
PXD035394 Dataset with its publication pending (from PRIDE)Dataset title: Nuclear myosin VI maintains replication fork stabilityPossible reference: Shi, J. et al. (2023) Nuclear myosin VI maintains replication fork stability., Nat Commun, PMID 37355687
PXD035390 Dataset with its publication pending (from iProX)Dataset title: Proteomics and Phosphoproteomics of Cymbidium sinense Leaf Variegation MutantPossible reference: Gao, J. et al. (2024) Phosphorylation of 399S at CsHsp70 of Cymbidium sinense is essential to maintain chlorophyll stability., Plant Physiol Biochem, PMID 38744085
PXD035385 Dataset with its publication pending (from iProX)Dataset title: Vibrio alginolyticus strain: ZJ-TPossible reference: Deng, Y. et al. (2016) The RNA Chaperone Hfq Is Involved in Colony Morphology, Nutrient Utilization and Oxidative and Envelope Stress Response in Vibrio alginolyticus., PLoS One, PMID 27685640
PXD035376 Dataset with its publication pending (from jPOST)Dataset title: Brain proteomics in GLUT1-deltaGFAP micePossible reference: Ardanaz, CG. et al. (2024) Astrocytic GLUT1 reduction paradoxically improves central and peripheral glucose homeostasis., Sci Adv, PMID 39423276
PXD035359 no publication (from MassIVE)Dataset title: Identifying natural bioactive peptides from the ink by-product of common octopus (Octopus vulgaris) using proteomics Possible reference: Imran, MAS. et al. (2023) Insights into Common Octopus (Octopus vulgaris) Ink Proteome and Bioactive Peptides Using Proteomic Approaches., Mar Drugs, PMID 37103345
PXD035356 no publication (from MassIVE)Dataset title: Identifying natural bioactive peptides from the common octopus (Octopus vulgaris Cuvier, 1797) skin mucus by-products using proteogenomic analysis Possible reference: Pérez-Polo, S. et al. (2023) Identifying Natural Bioactive Peptides from the Common Octopus (Octopus vulgaris Cuvier, 1797) Skin Mucus By-Products Using Proteogenomic Analysis., Int J Mol Sci, PMID 37108304
PXD035355 Dataset with its publication pending (from jPOST)Dataset title: Enhanced protein-protein interaction network construction promoted by in vivo cross-linkingPossible reference: Zhao, L. et al. (2022) Enhanced protein-protein interaction network construction promoted by in vivo cross-linking with acid-cleavable click-chemistry enrichment., Front Chem, PMID 36479438
PXD035346 Dataset with its publication pending (from PRIDE)Dataset title: Branch point evolution controls species-specific alternative splicing and regulates long term potentiationPossible reference: Franz, A. et al. (2023) Branch point strength controls species-specific CAMK2B alternative splicing and regulates LTP., Life Sci Alliance, PMID 36543542
PXD035317 Dataset with its publication pending (from jPOST)Dataset title: Enhanced protein-protein interaction network construction promoted by in vivo cross-linking with acid-cleavable click chemistry enrichmentPossible reference: Zhao, L. et al. (2022) Enhanced protein-protein interaction network construction promoted by in vivo cross-linking with acid-cleavable click-chemistry enrichment., Front Chem, PMID 36479438
PXD035313 Dataset with its publication pending (from iProX)Dataset title: Quantitative proteomic analysis of ClpX in SynechocystisPossible reference: Zhang, Y. et al. (2022) Proteomic analysis of the regulatory networks of ClpX in a model cyanobacterium Synechocystis sp. PCC 6803., Front Plant Sci, PMID 36247581
PXD035312 no publication (from MassIVE)Dataset title: Vitamin C modulates the levels of several proteins of the mitochondrial complex III and its activity in the mouse liver Possible reference: Aumailley, L. et al. (2022) Vitamin C modulates the levels of several proteins of the mitochondrial complex III and its activity in the mouse liver., Redox Biol, PMID 36179436
PXD035309 Dataset with its publication pending (from PRIDE)Dataset title: Lysine Acetylome Profiling Reveals Diverse Functions of Acetylation in Deinococcus RadioduransPossible reference: Zhang, Y. et al. (2022) Lysine Acetylome Profiling Reveals Diverse Functions of Acetylation in Deinococcus radiodurans., Microbiol Spectr, PMID 35972276
PXD035301 Dataset with its publication pending (from PRIDE)Dataset title: Comparative analyses of the N-glycoproteomes in HCT116 cancer cells and their non-tumorigenic DNMT1/3b double knockout (DKO1) cells and insight into the Mannose-6-phosphate pathwayPossible reference: Chen, M. et al. (2023) Comparative site-specific N-glycoproteome analysis reveals aberrant N-glycosylation and gives insights into mannose-6-phosphate pathway in cancer., Commun Biol, PMID 36639722
PXD035300 no publication (from MassIVE)Dataset title: An apical protein, Pcr2, is required for persistent movement by the human parasite Toxoplasma gondiiPossible reference: Munera Lopez, J. et al. (2022) An apical protein, Pcr2, is required for persistent movement by the human parasite Toxoplasma gondii., PLoS Pathog, PMID 35994509
PXD035254 Dataset with its publication pending (from PRIDE)Dataset title: IFITM3 restricts virus-induced inflammatory cytokine production by limiting Nogo-B mediated TLR responsesPossible reference: Clement, M. et al. (2022) IFITM3 restricts virus-induced inflammatory cytokine production by limiting Nogo-B mediated TLR responses., Nat Commun, PMID 36075894
PXD035244 Dataset with its publication pending (from PRIDE)Dataset title: Small Extracellular Vesicles from Hypoxic Triple-Negative Breast Cancer Cells induce Oxygen-dependent Cell InvasionPossible reference: Pachane, BC. et al. (2022) Small Extracellular Vesicles from Hypoxic Triple-Negative Breast Cancer Cells Induce Oxygen-Dependent Cell Invasion., Int J Mol Sci, PMID 36293503
PXD035199 Dataset with its publication pending (from PRIDE)Dataset title: Benchmarking blood collection tubes and processing intervals for extracellular vesicle performance metricsPossible reference: Dhondt, B. et al. (2023) Benchmarking blood collection tubes and processing intervals for extracellular vesicle performance metrics., J Extracell Vesicles, PMID 37202906
PXD035192 Dataset with its publication pending (from PRIDE)Dataset title: Yeast Mitochondrial Derived Vesicles (MDVs) have membrane potential and contain a functional ATP synthasePossible reference: Hazan Ben-Menachem, R. et al. (2023) Mitochondrial-derived vesicles retain membrane potential and contain a functional ATP synthase., EMBO Rep, PMID 36929726
PXD035189 no publication (from MassIVE)Dataset title: CDK11 regulates pre-mRNA splicing by phosphorylation of SF3B1Possible reference: Hluchý, M. et al. (2022) CDK11 regulates pre-mRNA splicing by phosphorylation of SF3B1., Nature, PMID 36104565
PXD035188 Dataset with its publication pending (from iProX)Dataset title: Investigation of the synergistic effect mechanism underlying sequential use of palbociclib and cisplatin through integral proteomic and glycoproteomic analysisPossible reference: Yang, L. et al. (2024) Investigation of the synergistic effect mechanism underlying sequential use of palbociclib and cisplatin through integral proteomic and glycoproteomic analysis., Anticancer Drugs, PMID 39011652
PXD035166 Dataset with its publication pending (from iProX)Dataset title: Genetic code expansion reveals aminoacylated lysine ubiquitination mediated by UBE2WPossible reference: Zang, J. et al. (2023) Genetic code expansion reveals aminoacylated lysine ubiquitination mediated by UBE2W., Nat Struct Mol Biol, PMID 36593310
PXD035156 Dataset with its publication pending (from PRIDE)Dataset title: Comparative proteomic analysis for a putative 2, 3-bisphosphoglycerate-dependent phosphoglycerate mutase in Acidovorax citrulliPossible reference: Lee, J. et al. (2022) A putative 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase is involved in the virulence, carbohydrate metabolism, biofilm formation, twitching halo, and osmotic tolerance in Acidovorax citrulli., Front Plant Sci, PMID 36438092
PXD035140 Dataset with its publication pending (from PRIDE)Dataset title: Different SWI/SNF complexes coordinately promote R-loop- and RAD52- dependent transcription-coupled homologous recombinationPossible reference: Davó-Martínez, C. et al. (2023) Different SWI/SNF complexes coordinately promote R-loop- and RAD52-dependent transcription-coupled homologous recombination., Nucleic Acids Res, PMID 37470997
PXD035138 Dataset with its publication pending (from PRIDE)Dataset title: Evidence for a widespread third system for bacterial polysaccharide export across the outer membrane comprising a composite OPX/β-barrel transloconPossible reference: Schwabe, J. et al. (2022) Evidence for a Widespread Third System for Bacterial Polysaccharide Export across the Outer Membrane Comprising a Composite OPX/β-Barrel Translocon., mBio, PMID 35972145
PXD035133 Dataset with its publication pending (from iProX)Dataset title: Characterization the phosphate response 2-dependent and independent Pi-starvation response secretome in ricePossible reference: Du, Z. et al. (2022) Characterization of the PHOSPHATE RESPONSE 2-dependent and -independent Pi-starvation response secretome in rice., J Exp Bot, PMID 35994773
PXD035125 Dataset with its publication pending (from PRIDE)Dataset title: ¬The EGFR/ErbB inhibitor neratinib promotes apoptosis and clearance by airway macrophagesPossible reference: Herman, KD. et al. (2022) The EGFR/ErbB inhibitor neratinib modifies the neutrophil phosphoproteome and promotes apoptosis and clearance by airway macrophages., Front Immunol, PMID 35967296
PXD035121 Dataset with its publication pending (from PRIDE)Dataset title: Cardiac perilipin 5 promotes physiological cardioprotective hypertrophy through increased calcium handling and cardiomyocyte contractilityPossible reference: Cinato, M. et al. (2023) Cardiac Plin5 interacts with SERCA2 and promotes calcium handling and cardiomyocyte contractility., Life Sci Alliance, PMID 36717246
PXD035109 Dataset with its publication pending (from PRIDE)Dataset title: The Holdup Multiplex, an assay for high-throughput measurement of protein-ligand affinity constants using a mass-spectrometry readoutPossible reference: Delalande, F. et al. (2025) Holdup Multiplex Assay for High-Throughput Measurement of Protein-Ligand Affinity Constants Using a Mass Spectrometry Readout., J Am Chem Soc, PMID 40129024
PXD035107 Dataset with its publication pending (from PRIDE)Dataset title: Global phosphoproteomic profiling of skeletal muscle in ovarian-hormone deficient micePossible reference: Peyton, MP. et al. (2022) Global phosphoproteomic profiling of skeletal muscle in ovarian hormone-deficient mice., Physiol Genomics, PMID 36062884
PXD035100 Dataset with its publication pending (from PRIDE)Dataset title: ALK fusion NSCLC oncogenes promote survival and inhibit NK cell responses via SERPINB4 expressionPossible reference: Chuang, TP. et al. (2023) ALK fusion NSCLC oncogenes promote survival and inhibit NK cell responses via SERPINB4 expression., Proc Natl Acad Sci U S A, PMID 36791109
PXD035095 no publication (from MassIVE)Dataset title: Witch Nails Krt90whnl A spontaneous mouse mutation affecting nail growth and developmentPossible reference: Sundberg, JP. et al. (2022) Witch Nails (Krt90whnl): A spontaneous mouse mutation affecting nail growth and development., PLoS One, PMID 36374931
PXD035082 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic analysis of the secretome of a esxaA mutant Mycobacterium tuberculosis strainPossible reference: Tschumi, A. et al. (2012) Functional analyses of mycobacterial lipoprotein diacylglyceryl transferase and comparative secretome analysis of a mycobacterial lgt mutant., J Bacteriol, PMID 22609911
PXD035078 Dataset with its publication pending (from PRIDE)Dataset title: Evaluation of absorbent cotton for glycopeptide enrichmentPossible reference: Xin, M. et al. (2022) Evaluation of absorbent cotton for glycopeptide enrichment., Anal Bioanal Chem, PMID 36181511
PXD035076 Dataset with its publication pending (from PRIDE)Dataset title: Phenylalanine Impairs Insulin Signaling and Inhibits Glucose Uptake Through Modification of IRβPossible reference: Zhou, Q. et al. (2022) Phenylalanine impairs insulin signaling and inhibits glucose uptake through modification of IRβ., Nat Commun, PMID 35879296
PXD035065 Dataset with its publication pending (from PRIDE)Dataset title: Salt and metal tolerance involves formation of guttation droplets in species of the Aspergillus versicolor complexPossible reference: Harpke, M. et al. (2022) Salt and Metal Tolerance Involves Formation of Guttation Droplets in Species of the Aspergillus versicolor Complex., Genes (Basel), PMID 36140799
PXD035059 Dataset with its publication pending (from iProX)Dataset title: Sunflower seed proteome analysis by iTRAQPossible reference: Yang, C. et al. (2017) iTRAQ-based proteomics of sunflower cultivars differing in resistance to parasitic weed Orobanche cumana., Proteomics, PMID 28618117
PXD035058 Dataset with its publication pending (from iProX)Dataset title: Bioinformatics and quantitative proteomics-based identification of gastric adenocarcinoma-related proteins and analysis of PGRN functionPossible reference: Liu, W. et al. (2024) Bioinformatics- and quantitative proteomics-based identification of gastric adenocarcinoma-related proteins and analysis., Am J Cancer Res, PMID 39659938
PXD035046 no publication (from MassIVE)Dataset title: Rapid Monocyte Recruitment Dictates the Therapeutic Efficacy of Focal RadiotherapyPossible reference: Tadepalli, S. et al. (2023) Rapid recruitment and IFN-I-mediated activation of monocytes dictate focal radiotherapy efficacy., Sci Immunol, PMID 37294749
PXD035045 Dataset with its publication pending (from PRIDE)Dataset title: Ubiquitinome profiling reveals in vivo UBE2D3 targets and implicates UBE2D3 in protein quality control.Possible reference: Yalçin, Z. et al. (2023) Ubiquitinome Profiling Reveals in Vivo UBE2D3 Targets and Implicates UBE2D3 in Protein Quality Control., Mol Cell Proteomics, PMID 37059365
PXD035030 Dataset with its publication pending (from PRIDE)Dataset title: Comprehensive analysis of platelet glycoprotein Ibα glycosylation.Possible reference: Hollenhorst, MA. et al. (2023) Comprehensive analysis of platelet glycoprotein Ibα ectodomain glycosylation., J Thromb Haemost, PMID 36740532
PXD035001 Dataset with its publication pending (from PRIDE)Dataset title: Heat shock chaperone HSPB1 regulates cytoplasmic TDP-43 phase separation and liquid-to-gel transitionPossible reference: Lu, S. et al. (2022) Heat-shock chaperone HSPB1 regulates cytoplasmic TDP-43 phase separation and liquid-to-gel transition., Nat Cell Biol, PMID 36075972
PXD034999 Dataset with its publication pending (from PRIDE)Dataset title: The UAS domain of UBXN7 interacts with RNF111 RING domainPossible reference: Amhaz, S. et al. (2023) The UAS thioredoxin-like domain of UBXN7 regulates E3 ubiquitin ligase activity of RNF111/Arkadia., BMC Biol, PMID 37024974
PXD034987 Dataset with its publication pending (from PRIDE)Dataset title: The proteomic responses of carbapenemase-producing and non-producing carbapenem-resistant Pseudomonas aeruginosa strains to subminimal-inhibitory concentrations of meropenem revealed by quantitative tandem mass spectrometryPossible reference: Salvà-Serra, F. et al. (2022) Responses of carbapenemase-producing and non-producing carbapenem-resistant Pseudomonas aeruginosa strains to meropenem revealed by quantitative tandem mass spectrometry proteomics., Front Microbiol, PMID 36845973
PXD034986 Dataset with its publication pending (from PRIDE)Dataset title: RNA-DNA hybrids prevent resection at dysfunctional telomeresPossible reference: Pires, VB. et al. (2023) RNA-DNA hybrids prevent resection at dysfunctional telomeres., Cell Rep, PMID 36729832
PXD034968 Dataset with its publication pending (from PRIDE)Dataset title: iBench Ground Truth Validation ToolPossible reference: Cormican, JA. et al. (2023) iBench: A ground truth approach for advanced validation of mass spectrometry identification method., Proteomics, PMID 36189881
PXD034964 Dataset with its publication pending (from PRIDE)Dataset title: Identification of proteins that interact with TRAF6 in ADP-heptose- or IL-1β-stimulated HEK293 cellsPossible reference: Olajide, OA. et al. (2014) Picralima nitida seeds suppress PGE2 production by interfering with multiple signalling pathways in IL-1β-stimulated SK-N-SH neuronal cells., J Ethnopharmacol, PMID 24491645
PXD034953 no publication (from MassIVE)Dataset title: Tan_V-ATPase_mEAK-7_interaction_2022 Possible reference: Tan, YZ. et al. (2022) CryoEM of endogenous mammalian V-ATPase interacting with the TLDc protein mEAK-7., Life Sci Alliance, PMID 35794005
PXD034945 no publication (from MassIVE)Dataset title: Small changes in phospho-occupancy at the kinetochore-microtubule interface drive mitotic fidelityPossible reference: Kucharski, TJ. et al. (2022) Small changes in phospho-occupancy at the kinetochore-microtubule interface drive mitotic fidelity., J Cell Biol, PMID 35878017
PXD034937 Dataset with its publication pending (from PRIDE)Dataset title: Thermal proteome profiling of MMV897615Possible reference: Bopp, S. et al. (2023) Potent acyl-CoA synthetase 10 inhibitors kill Plasmodium falciparum by disrupting triglyceride formation., Nat Commun, PMID 36927839
PXD034922 Dataset with its publication pending (from PRIDE)Dataset title: Functional mapping of N-terminal residues in the yeast proteome uncovers novel determinants for mitochondrial protein importPossible reference: Nashed, S. et al. (2023) Functional mapping of N-terminal residues in the yeast proteome uncovers novel determinants for mitochondrial protein import., PLoS Genet, PMID 37585488
PXD034911 Dataset with its publication pending (from PRIDE)Dataset title: TNAP - a potential cytokine in the cerebral inflammation in Spastic Cerebral PalsyPossible reference: Wang, XK. et al. (2022) TNAP-a potential cytokine in the cerebral inflammation in spastic cerebral palsy., Front Mol Neurosci, PMID 36187348
PXD034908 Dataset with its publication pending (from PRIDE)Dataset title: The muscle proteome reflects changes in mitochondrial function, cellular stress and proteolysis after 14 days of unilateral lower limb immobilization in active young menPossible reference: Doering, TM. et al. (2022) The muscle proteome reflects changes in mitochondrial function, cellular stress and proteolysis after 14 days of unilateral lower limb immobilization in active young men., PLoS One, PMID 36048851
PXD034901 Dataset with its publication pending (from PRIDE)Dataset title: Acetylation of p62 regulates base excision repair through interaction with APE1Possible reference: Li, M. et al. (2022) Acetylation of p62 regulates base excision repair through interaction with APE1., Cell Rep, PMID 35858573
PXD034899 Dataset with its publication pending (from PRIDE)Dataset title: Acetylation of p62 regulates base excision repair through interaction with APE1Possible reference: Li, M. et al. (2022) Acetylation of p62 regulates base excision repair through interaction with APE1., Cell Rep, PMID 35858573
PXD034891 Dataset with its publication pending (from PRIDE)Dataset title: Label-free quantitative SWATH-MS proteomic analysis of adult myocardial slices in vitro after biomimetic electromechanical stimulationPossible reference: Zabielska-Kaczorowska, MA. et al. (2022) Label-free quantitative SWATH-MS proteomic analysis of adult myocardial slices in vitro after biomimetic electromechanical stimulation., Sci Rep, PMID 36192624
PXD034886 Dataset with its publication pending (from PRIDE)Dataset title: Sortilin-driven cancer secretome in HCCPossible reference: Chan, KK. et al. (2023) Sortilin-Driven Cancer Secretome Enhances Tumorigenic Properties of Hepatocellular Carcinoma via de Novo Lipogenesis., Am J Pathol, PMID 37673328
PXD034881 no publication (from MassIVE)Dataset title: Dynamic acylome reveals metabolite driven modifications in Syntrophomonas wolfei Possible reference: Fu, JY. et al. (2022) Dynamic acylome reveals metabolite driven modifications in Syntrophomonas wolfei., Front Microbiol, PMID 36419437
PXD034880 no publication (from MassIVE)Dataset title: Regulation of urea cycle by reversible high stoichiometry lysine succinylationPossible reference: Zhang, R. et al. (2024) Regulation of urea cycle by reversible high-stoichiometry lysine succinylation., Nat Metab, PMID 38448615
PXD034879 no publication (from MassIVE)Dataset title: Variation in milk proteins across lactation in Pongo pygmaeus and Gorilla gorillaPossible reference: Cleland, TP. et al. (2022) Variation in Milk Proteins Across Lactation in Pongo pygmaeus and Gorilla gorilla., J Proteome Res, PMID 36278968
PXD034875 Dataset with its publication pending (from PRIDE)Dataset title: Structure of the human FERRY Rab5 effector complexPossible reference: Quentin, D. et al. (2023) Structural basis of mRNA binding by the human FERRY Rab5 effector complex., Mol Cell, PMID 37267906
PXD034862 no publication (from MassIVE)Dataset title: High sensitivity limited material proteomics empowered by data-independent acquisition on linear ion trapsPossible reference: Phlairaharn, T. et al. (2022) High Sensitivity Limited Material Proteomics Empowered by Data-Independent Acquisition on Linear Ion Traps., J Proteome Res, PMID 36287219
PXD034860 no publication (from MassIVE)Dataset title: Synovial fluid proteomics from serial aspiration of ACL injured knees identifies candidate biomarkers for osteoarthritisPossible reference: Rai, MF. et al. (2023) Synovial Fluid Proteomics From Serial Aspirations of ACL-Injured Knees Identifies Candidate Biomarkers., Am J Sports Med, PMID 37191559
PXD034845 Dataset with its publication pending (from PRIDE)Dataset title: Oxonium Ion-Guided Ion Mobility-Assisted Glycoproteomics on the timsTOF ProPossible reference: Mukherjee, S. et al. (2023) Oxonium Ion-Guided Optimization of Ion Mobility-Assisted Glycoproteomics on the timsTOF Pro., Mol Cell Proteomics, PMID 36549589
PXD034838 no publication (from MassIVE)Dataset title: Proteomic analysis of prostate cancer FFPE samples reveals markers of disease progression and aggressivenessPossible reference: Lygirou, V. et al. (2022) Proteomic Analysis of Prostate Cancer FFPE Samples Reveals Markers of Disease Progression and Aggressiveness., Cancers (Basel), PMID 35954429
PXD034829 Dataset with its publication pending (from PRIDE)Dataset title: Intestinal epithelial c-Maf expression determines enterocyte differentiation and nutrient uptakePossible reference: Cosovanu, C. et al. (2022) Intestinal epithelial c-Maf expression determines enterocyte differentiation and nutrient uptake in mice., J Exp Med, PMID 36121416
PXD034808 Dataset with its publication pending (from PRIDE)Dataset title: Succinlylome profiling of bermudagrass stolonsPossible reference: Zhang, B. et al. (2017) Comparative transcriptome analysis provides new insights into erect and prostrate growth in bermudagrass (Cynodon dactylon L.)., Plant Physiol Biochem, PMID 29080425
PXD034806 Dataset with its publication pending (from PRIDE)Dataset title: The human milk proteome: exploring associations with allergy of mother and childPossible reference: Dekker, PM. et al. (2022) The human milk proteome and allergy of mother and child: Exploring associations with protein abundances and protein network connectivity., Front Immunol, PMID 36311719
PXD034805 Dataset with its publication pending (from PRIDE)Dataset title: A mass spectrometry-based approach for the identification of Kpnβ1 binding partners in cancer cellsPossible reference: Okpara, MO. et al. (2022) A mass spectrometry-based approach for the identification of Kpnβ1 binding partners in cancer cells., Sci Rep, PMID 36418423
PXD034801 no publication (from MassIVE)Dataset title: Lack of TRPV1 Channel Modulates Mouse Gene Expression and Liver Proteome with Glucose Metabolism ChangesPossible reference: Lacerda, JT. et al. (2022) Lack of TRPV1 Channel Modulates Mouse Gene Expression and Liver Proteome with Glucose Metabolism Changes., Int J Mol Sci, PMID 35806020
PXD034773 Dataset with its publication pending (from PRIDE)Dataset title: Machine learning predictions of MHC-II specificities reveal alternative binding mode of class II epitopesPossible reference: Racle, J. et al. (2023) Machine learning predictions of MHC-II specificities reveal alternative binding mode of class II epitopes., Immunity, PMID 37023751
PXD034771 Dataset with its publication pending (from PRIDE)Dataset title: Inhibition of mammalian mtDNA transcription in liver reprograms metabolism to reverse diet-induced obesity and hepatosteatosisPossible reference: Jiang, S. et al. (2024) Inhibition of mammalian mtDNA transcription acts paradoxically to reverse diet-induced hepatosteatosis and obesity., Nat Metab, PMID 38689023
PXD034770 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic profiling of canine (dog) serum and urinePossible reference: Rouillon, J. et al. (2014) Proteomics profiling of urine reveals specific titin fragments as biomarkers of Duchenne muscular dystrophy., Neuromuscul Disord, PMID 24813925
PXD034768 Dataset with its publication pending (from jPOST)Dataset title: Suborganelle-specific protein complexes analysis enabled by in-vivo crosslinking coupled with proximal labeling Possible reference: An, Y. et al. (2022) Suborganelle-Specific Protein Complex Analysis Enabled by in Vivo Cross-Linking Coupled with Proximal Labeling., Anal Chem, PMID 36004751
PXD034712 Dataset with its publication pending (from PRIDE)Dataset title: Compounds activating VCP D1 ATPase enhance both autophagic and proteasomal neurotoxic protein clearancePossible reference: Wrobel, L. et al. (2022) Compounds activating VCP D1 ATPase enhance both autophagic and proteasomal neurotoxic protein clearance., Nat Commun, PMID 35842429
PXD034644 Dataset with its publication pending (from PRIDE)Dataset title: N-acetylcysteine overcomes NF1-loss driven resistance to PI3K alpha inhibition in breast cancer.Possible reference: Auf der Maur, P. et al. (2023) N-acetylcysteine overcomes NF1 loss-driven resistance to PI3Kα inhibition in breast cancer., Cell Rep Med, PMID 37044095
PXD034641 Dataset with its publication pending (from PRIDE)Dataset title: Effect of iron-limitation, elevated temperature and florfenicol antibiotics on the subcellular proteomes and the vesiculation of the fish pathogen Aeromonas salmonicidaPossible reference: Kroniger, T. et al. (2022) Effect of Iron Limitation, Elevated Temperature, and Florfenicol on the Proteome and Vesiculation of the Fish Pathogen Aeromonas salmonicida., Microorganisms, PMID 36144337
PXD034635 no publication (from MassIVE)Dataset title: Protein nonadditivity and stability contribute to heterosis in Arabidopsis hybrids and allotetraploidsPossible reference: June, V. et al. (2023) Protein nonadditive expression and solubility contribute to heterosis in Arabidopsis hybrids and allotetraploids., Front Plant Sci, PMID 37780492
PXD034604 Dataset with its publication pending (from PRIDE)Dataset title: Cardioviruses’ leader proteins retarget RSK kinases toward alternative substrates to perturb nucleocytoplasmic trafficPossible reference: Lizcano-Perret, B. et al. (2022) Cardiovirus leader proteins retarget RSK kinases toward alternative substrates to perturb nucleocytoplasmic traffic., PLoS Pathog, PMID 36508477
PXD034596 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic profiling of fibroblasts differentiates patients with severe, intermediate and mild spinal muscular atrophyPossible reference: Brown, SJ. et al. (2022) The Proteome Signatures of Fibroblasts from Patients with Severe, Intermediate and Mild Spinal Muscular Atrophy Show Limited Overlap., Cells, PMID 36078032
PXD034571 Dataset with its publication pending (from PRIDE)Dataset title: Proteogenomic characterization of pancreatic neuroendocrine tumorPossible reference: Tanaka, A. et al. (2024) Proteogenomic characterization of pancreatic neuroendocrine tumors uncovers hypoxia and immune signatures in clinically aggressive subtypes., iScience, PMID 39206147
PXD034565 Dataset with its publication pending (from PRIDE)Dataset title: Phosphoproteome dynamics of Streptomyces rimosus during submerged growth and antibiotic productionPossible reference: Šarić, E. et al. (2022) Phosphoproteome Dynamics of Streptomyces rimosus during Submerged Growth and Antibiotic Production., mSystems, PMID 36094082
PXD034562 Dataset with its publication pending (from PRIDE)Dataset title: Deciphering the involvement of the Hippo pathway co - regulators, YAP/TAZ in invadopodia formation and matrix degradationPossible reference: Venghateri, JB. et al. (2023) Deciphering the involvement of the Hippo pathway co-regulators, YAP/TAZ in invadopodia formation and matrix degradation., Cell Death Dis, PMID 37185904
PXD034517 Dataset with its publication pending (from PRIDE)Dataset title: MYC sensitises cells to apoptosis by driving energetic demandPossible reference: Edwards-Hicks, J. et al. (2022) MYC sensitises cells to apoptosis by driving energetic demand., Nat Commun, PMID 35945217
PXD034511 Dataset with its publication pending (from PRIDE)Dataset title: A complex epigenome-splicing crosstalk governs epithelial to mesenchymal transition in metastasis and brain developmentPossible reference: Sahu, SK. et al. (2022) A complex epigenome-splicing crosstalk governs epithelial-to-mesenchymal transition in metastasis and brain development., Nat Cell Biol, PMID 35941369
PXD034505 no publication (from MassIVE)Dataset title: TXNRD1 drives innate immune response in senescent cells and promotes age-associated inflammationPossible reference: Hao, X. et al. (2024) TXNRD1 drives the innate immune response in senescent cells with implications for age-associated inflammation., Nat Aging, PMID 38267705
PXD034503 Dataset with its publication pending (from jPOST)Dataset title: Phosphoproteomic analysis by DIA-MSPossible reference: Huang, C. et al. (2020) Phosphoproteomic characterization of the signaling network resulting from activation of the chemokine receptor CCR2., J Biol Chem, PMID 32241914
PXD034498 no publication (from MassIVE)Dataset title: Quantitative Proteomics and Network Analysis of Differentially Expressed Proteins in proteomes of icefish muscle mitochondria compared with closely related red-blooded speciesPossible reference: Katyal, G. et al. (2022) Quantitative Proteomics and Network Analysis of Differentially Expressed Proteins in Proteomes of Icefish Muscle Mitochondria Compared with Closely Related Red-Blooded Species., Biology (Basel), PMID 35892974
PXD034491 Dataset with its publication pending (from PRIDE)Dataset title: TurboID identification of evolutionarily divergent components of the nuclear pore complex in the malaria model Plasmodium bergheiPossible reference: Ambekar, SV. et al. (2022) TurboID Identification of Evolutionarily Divergent Components of the Nuclear Pore Complex in the Malaria Model Plasmodium berghei., mBio, PMID 36040030
PXD034486 Dataset with its publication pending (from iProX)Dataset title: Proteomics of human placenta-derived exosomePossible reference: Familari, M. et al. (2017) Placenta-derived extracellular vesicles: their cargo and possible functions., Reprod Fertil Dev, PMID 26411402
PXD034482 no publication (from MassIVE)Dataset title: A naturally occurring variant of SHLP2 is a protective factor in Parkinson diseasePossible reference: Kim, SJ. et al. (2024) A naturally occurring variant of SHLP2 is a protective factor in Parkinson's disease., Mol Psychiatry, PMID 38167865
PXD034476 Dataset with its publication pending (from PRIDE)Dataset title: Deep Proteome profiling reveals signatures of age and sex differences in paw skin and sciatic nerve of naïve micePossible reference: Xian, F. et al. (2022) Deep proteome profiling reveals signatures of age and sex differences in paw skin and sciatic nerve of naïve mice., Elife, PMID 36448997
PXD034471 Dataset with its publication pending (from PRIDE)Dataset title: Coordinate control of endoplasmic reticulum chaperone biosynthesis and peptide hormone secretion revealed by a β-cell model of Prader-Willi syndromePossible reference: Koppes, EA. et al. (2023) Insulin secretion deficits in a Prader-Willi syndrome β-cell model are associated with a concerted downregulation of multiple endoplasmic reticulum chaperones., PLoS Genet, PMID 37068109
PXD034464 Dataset with its publication pending (from PRIDE)Dataset title: Novel splicing and open reading frames revealed by long-read direct RNA sequencing of adenovirus transcriptsPossible reference: Price, AM. et al. (2022) Novel viral splicing events and open reading frames revealed by long-read direct RNA sequencing of adenovirus transcripts., PLoS Pathog, PMID 36095031
PXD034448 Dataset with its publication pending (from PRIDE)Dataset title: Comprehensive chromatin proteomics resolves functional phases of pluripotency and identifies changes in regulatory componentsPossible reference: Ugur, E. et al. (2023) Comprehensive chromatin proteomics resolves functional phases of pluripotency and identifies changes in regulatory components., Nucleic Acids Res, PMID 36806742
PXD034444 Dataset with its publication pending (from PRIDE)Dataset title: Collateral lethality between HDAC1 and HDAC2 exploits cancer-specific NuRD complex vulnerabilitiesPossible reference: Zhang, Y. et al. (2023) Collateral lethality between HDAC1 and HDAC2 exploits cancer-specific NuRD complex vulnerabilities., Nat Struct Mol Biol, PMID 37488358
PXD034440 Dataset with its publication pending (from PRIDE)Dataset title: Chemical degradation of BTK/TEC as a novel approach to inhibit platelet function.Possible reference: Trory, JS. et al. (2023) Chemical degradation of BTK/TEC as a novel approach to inhibit platelet function., Blood Adv, PMID 36342848
PXD034417 Dataset with its publication pending (from PRIDE)Dataset title: Engineering consortia by polymeric microbial swarmbotsPossible reference: Wang, L. et al. (2022) Engineering consortia by polymeric microbial swarmbots., Nat Commun, PMID 35790722
PXD034409 Dataset with its publication pending (from jPOST)Dataset title: Proteomic Profiling of Cutaneous Melanoma Identifies Novel Molecular Signatures of Tumour MetastasisPossible reference: Duffy, DJ. et al. (2016) Wnt signalling is a bi-directional vulnerability of cancer cells., Oncotarget, PMID 27531891
PXD034383 Dataset with its publication pending (from PRIDE)Dataset title: Venom dynamics across populations of NematostellaPossible reference: Smith, EG. et al. (2023) Micro and macroevolution of sea anemone venom phenotype., Nat Commun, PMID 36646703
PXD034370 Dataset with its publication pending (from PRIDE)Dataset title: Microscopy-based functional single cell proteomic profiling of cells with abnormal DNA damage response dynamicsPossible reference: Su, PR. et al. (2022) Microscopy-based single-cell proteomic profiling reveals heterogeneity in DNA damage response dynamics., Cell Rep Methods, PMID 35784653
PXD034355 Dataset with its publication pending (from PRIDE)Dataset title: Phosphoproteomic analysis of neoadjuvant breast cancer reveals a subset of patients with increased sensitivity to paclitaxel driven by CDK4 and Filamin A.Possible reference: Mouron, S. et al. (2022) Phosphoproteomic analysis of neoadjuvant breast cancer suggests that increased sensitivity to paclitaxel is driven by CDK4 and filamin A., Nat Commun, PMID 36477027
PXD034351 Dataset with its publication pending (from PRIDE)Dataset title: System-wide profiling of drug residence time by proteome integral solubility alteration assayPossible reference: Sabatier, P. et al. (2022) System-Wide Profiling by Proteome Integral Solubility Alteration Assay of Drug Residence Times for Target Characterization., Anal Chem, PMID 36377428
PXD034342 Dataset with its publication pending (from PRIDE)Dataset title: Human mitochondria require mtRF1 for translation termination at non-canonical stop codonsPossible reference: Nadler, F. et al. (2022) Human mtRF1 terminates COX1 translation and its ablation induces mitochondrial ribosome-associated quality control., Nat Commun, PMID 36302763
PXD034341 Dataset with its publication pending (from PRIDE)Dataset title: m6a methylation orchestrates IMP1 regulation of microtubules during human neuronal differentiationPossible reference: Klein, P. et al. (2024) m6a methylation orchestrates IMP1 regulation of microtubules during human neuronal differentiation., Nat Commun, PMID 38844464
PXD034275 no publication (from MassIVE)Dataset title: In-depth Analysis of the Sirtuin 5-regulated Mouse Brain Acylome using Library-free Data-Independent AcquisitionsPossible reference: Bons, J. et al. (2023) In-depth analysis of the Sirtuin 5-regulated mouse brain malonylome and succinylome using library-free data-independent acquisitions., Proteomics, PMID 36479818
PXD034273 no publication (from MassIVE)Dataset title: Isolation of intact and active FoF1 ATP synthase using a FLAG-tagged subunit from the cyanobacterium Synechocystis sp. PCC 6803Possible reference: Song, K. et al. (2022) Isolation of intact and active FoF1 ATP synthase using a FLAG-tagged subunit from the cyanobacterium Synechocystis sp. PCC 6803., STAR Protoc, PMID 36039073
PXD034268 Dataset with its publication pending (from iProX)Dataset title: Aeromonas hydrophila NJ-35 proteomePossible reference: Liu, J. et al. (2018) Tetrahymena thermophila Predation Enhances Environmental Adaptation of the Carp Pathogenic Strain Aeromonas hydrophila NJ-35., Front Cell Infect Microbiol, PMID 29594069
PXD034248 Dataset with its publication pending (from PRIDE)Dataset title: The E3 ubiquitin ligase adaptor cereblon targets the C-terminal cyclic imide degronPossible reference: Ichikawa, S. et al. (2024) The cyclimids: Degron-inspired cereblon binders for targeted protein degradation., Cell Chem Biol, PMID 38320555
PXD034244 Dataset with its publication pending (from PRIDE)Dataset title: Transcriptome and proteome profiling of activated cardiac fibroblasts supports target prioritization in cardiac fibrosisPossible reference: Moita, MR. et al. (2022) Transcriptome and proteome profiling of activated cardiac fibroblasts supports target prioritization in cardiac fibrosis., Front Cardiovasc Med, PMID 36531712
PXD034242 Dataset with its publication pending (from PRIDE)Dataset title: The non-classical major-histocompatibility-complex II protein SLA-DM is crucial for African swine fever virus replicationPossible reference: Pannhorst, K. et al. (2023) The non-classical major histocompatibility complex II protein SLA-DM is crucial for African swine fever virus replication., Sci Rep, PMID 37604847
PXD034233 Dataset with its publication pending (from iProX)Dataset title: Significant alterations of sphingolipid metabolism in GC discovered by lipidome pseudotargeted metabolomicsPossible reference: Zeng, J. et al. (2022) Lipid metabolism characterization in gastric cancer identifies signatures to predict prognostic and therapeutic responses., Front Genet, PMID 36406121
PXD034231 Dataset with its publication pending (from jPOST)Dataset title: Mitochondrial protein import stress regulates the LC3 lipidation step of mitophagy through NLRX1 and RRBP1Possible reference: Killackey, SA. et al. (2022) Mitochondrial protein import stress regulates the LC3 lipidation step of mitophagy through NLRX1 and RRBP1., Mol Cell, PMID 35752171
PXD034226 Dataset with its publication pending (from iProX)Dataset title: Proteome analysis of two Eucalyptus species during the somatic embryogenesisPossible reference: Chen, S. et al. (2024) Integration analysis of transcriptome and proteome profiles brings new insights of somatic embryogenesis of two eucalyptus species., BMC Plant Biol, PMID 38877454
PXD034214 Dataset with its publication pending (from PRIDE)Dataset title: Plasma glycoproteomics delivers high-specificity disease biomarkers by detecting site-specific glycosylation abnormalitiesPossible reference: Wessels, HJCT. et al. (2024) Plasma glycoproteomics delivers high-specificity disease biomarkers by detecting site-specific glycosylation abnormalities., J Adv Res, PMID 37683725
PXD034202 Dataset with its publication pending (from jPOST)Dataset title: Tape Stripped Stratum Corneum Samples are Suitable for Diagnosis and Comprehensive Proteomic Investigation in Mycosis FungoidesPossible reference: Qureshi, HA. et al. (2023) Tape stripped stratum corneum samples are suitable for diagnosis and comprehensive proteomic investigation in mycosis fungoides., Proteomics Clin Appl, PMID 36824058
PXD034187 Dataset with its publication pending (from PRIDE)Dataset title: HBO1 Catalyzes Lysine Benzoylation in Mammalian CellsPossible reference: Tan, D. et al. (2022) HBO1 catalyzes lysine benzoylation in mammalian cells., iScience, PMID 36388951
PXD034174 Dataset with its publication pending (from PRIDE)Dataset title: Physiological constraints dictate toxin spatial heterogeneity in snake venom glandsPossible reference: Kazandjian, TD. et al. (2022) Physiological constraints dictate toxin spatial heterogeneity in snake venom glands., BMC Biol, PMID 35761243
PXD034173 Dataset with its publication pending (from PRIDE)Dataset title: The type-A response regulators negatively mediate heat stress response by altering redox homeostasis in ArabidopsisPossible reference: Jindal, S. et al. (2022) Type-A response regulators negatively mediate heat stress response by altering redox homeostasis in Arabidopsis., Front Plant Sci, PMID 36212299
PXD034172 no publication (from MassIVE)Dataset title: Oxonium ion scanning mass spectrometry for large-scale plasma glycoproteomicsPossible reference: White, MEH. et al. (2024) Oxonium ion scanning mass spectrometry for large-scale plasma glycoproteomics., Nat Biomed Eng, PMID 37474612
PXD034170 no publication (from MassIVE)Dataset title: Bioprospecting the American Alligator Peptidome for Antiviral Peptides Against Venezuelan Equine Encephalitis VirusPossible reference: Carfagno, A. et al. (2023) Bioprospecting the American Alligator Peptidome for antiviral peptides against Venezuelan equine encephalitis virus., Proteomics, PMID 36480152
PXD034167 Dataset with its publication pending (from PRIDE)Dataset title: The Plasmodium falciparum Nuclear Protein Phosphatase NIF4 is Required for Efficient Merozoite Invasion and Regulates Artemisinin SensitivityPossible reference: Zhu, X. et al. (2022) The Plasmodium falciparum Nuclear Protein Phosphatase NIF4 Is Required for Efficient Merozoite Invasion and Regulates Artemisinin Sensitivity., mBio, PMID 35938722
PXD034156 Dataset with its publication pending (from PRIDE)Dataset title: DYRK1A regulates B cell class switch recombination through phosphorylation of MSH6Possible reference: Stoler-Barak, L. et al. (2023) B cell class switch recombination is regulated by DYRK1A through MSH6 phosphorylation., Nat Commun, PMID 36927854
PXD034140 Dataset with its publication pending (from PRIDE)Dataset title: Non-histone protein methylation in Trypanosoma cruzi epimastigotesPossible reference: de Almeida, RF. et al. (2023) Non-histone protein methylation in Trypanosoma cruzi epimastigotes., Proteomics, PMID 37183273
PXD034132 Dataset with its publication pending (from PRIDE)Dataset title: Novel Venetin-1 nanoparticle from earthworm coelomic fluid as a promising agent for the treatment of non-small cell lung cancerPossible reference: Rybicka, M. et al. (2022) Novel Venetin-1 nanoparticle from earthworm coelomic fluid as a promising agent for the treatment of non-small cell lung cancer., Sci Rep, PMID 36323731
PXD034128 Dataset with its publication pending (from PRIDE)Dataset title: Rapid and in-depth coverage of the (phospho-)proteome with deep libraries and optimal window design for dia-PASEFPossible reference: Skowronek, P. et al. (2022) Rapid and In-Depth Coverage of the (Phospho-)Proteome With Deep Libraries and Optimal Window Design for dia-PASEF., Mol Cell Proteomics, PMID 35944843
PXD034126 Dataset with its publication pending (from iProX)Dataset title: Protein Identification of Capsaicin in RAW264.7 cellsPossible reference: Zhang, Z. et al. (2024) Alcohol inducing macrophage M2b polarization in colitis by modulating the TRPV1-MAPK/NF-κB pathways., Phytomedicine, PMID 38810558
PXD034121 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic response of A549 lung cancer cell line to Venetin-1Possible reference: Czaplewska, P. et al. (2023) Proteomic response of A549 lung cancer cell line to protein-polysaccharide complex Venetin-1 isolated from earthworm coelomic fluid., Front Mol Biosci, PMID 37377864
PXD034111 Dataset with its publication pending (from jPOST)Dataset title: Plasmodium falciparum S-adenosylmethionine synthetase is essential for parasite survival through a complex interaction network with cytoplasmic and nuclear proteinsPossible reference: Musabyimana, JP. et al. (2022) Plasmodium falciparum S-Adenosylmethionine Synthetase Is Essential for Parasite Survival through a Complex Interaction Network with Cytoplasmic and Nuclear Proteins., Microorganisms, PMID 35889137
PXD034107 Dataset with its publication pending (from PRIDE)Dataset title: Nematode gene annotation by machine learning assisted proteotranscriptomics enables proteome-wide evolutionary analysisPossible reference: Ceron-Noriega, A. et al. (2023) Nematode gene annotation by machine-learning-assisted proteotranscriptomics enables proteome-wide evolutionary analysis., Genome Res, PMID 36653121
PXD034102 Dataset with its publication pending (from PRIDE)Dataset title: Aberrant expression of transglutaminase 2 in pancreas and thymus of NOD mice underscores the importance of deamidation in neoantigen generation.Possible reference: Callebaut, A. et al. (2022) Aberrant expression of transglutaminase 2 in pancreas and thymus of NOD mice underscores the importance of deamidation in neoantigen generation., Front Endocrinol (Lausanne), PMID 35966081
PXD034098 Dataset with its publication pending (from PRIDE)Dataset title:   Cyclin A and Cks1 promote kinase consensus switching to non-proline directed CDK1 phosphorylationPossible reference: Al-Rawi, A. et al. (2023) Cyclin A and Cks1 promote kinase consensus switching to non-proline-directed CDK1 phosphorylation., Cell Rep, PMID 36840943
PXD034076 Dataset with its publication pending (from PRIDE)Dataset title: Bioactive insulin-loaded electrospun wound dressings for localized drug delivery and stimulation of protein expression associated with wound healingPossible reference: Walther, M. et al. (2023) Bioactive Insulin-Loaded Electrospun Wound Dressings for Localized Drug Delivery and Stimulation of Protein Expression Associated with Wound Healing., Mol Pharm, PMID 36538353
PXD034065 Dataset with its publication pending (from PRIDE)Dataset title: Chitotriosidase 1 in the cerebrospinal fluid as a putative biomarker for HTLV-1-associated myelopathy/tropical spastic paraparesis (HAM/TSP) progressionPossible reference: Gomes, YCP. et al. (2022) Chitotriosidase 1 in the cerebrospinal fluid as a putative biomarker for HTLV-1-associated myelopathy/tropical spastic paraparesis (HAM/TSP) progression., Front Immunol, PMID 36052089
PXD034056 Dataset with its publication pending (from PRIDE)Dataset title: inSPIRE Spectral Rescoring ToolPossible reference: Cormican, JA. et al. (2022) inSPIRE: An Open-Source Tool for Increased Mass Spectrometry Identification Rates Using Prosit Spectral Prediction., Mol Cell Proteomics, PMID 36280141
PXD034041 Dataset with its publication pending (from jPOST)Dataset title: Apically-located P4-ATPase1-Lem1 complex flips phosphatidylserine and regulates motility-dependent invasion and egress in Toxoplasma gondiiPossible reference: Chen, K. et al. (2023) Apically-located P4-ATPase1-Lem1 complex internalizes phosphatidylserine and regulates motility-dependent invasion and egress in Toxoplasma gondii., Comput Struct Biotechnol J, PMID 36936814
PXD034040 no publication (from MassIVE)Dataset title: MRG proteins are shared by multiple protein complexes with distinct functions.Possible reference: Devoucoux, M. et al. (2022) MRG Proteins Are Shared by Multiple Protein Complexes With Distinct Functions., Mol Cell Proteomics, PMID 35636729
PXD034033 Dataset with its publication pending (from jPOST)Dataset title: Phosphorylation barcodes encoded by CXCR3 agonists direct biased chemokine signalingPossible reference: Eiger, DS. et al. (2023) Phosphorylation barcodes direct biased chemokine signaling at CXCR3., bioRxiv, PMID 36993369
PXD034028 Dataset with its publication pending (from PRIDE)Dataset title: Activation loop phosphorylation tunes conformational dynamics underlying Pyk2 tyrosine kinase activationPossible reference: Palhano Zanela, TM. et al. (2023) Activation loop phosphorylation tunes conformational dynamics underlying Pyk2 tyrosine kinase activation., Structure, PMID 36870334
PXD034027 Dataset with its publication pending (from PRIDE)Dataset title: DISCO-MS: Proteomics of spatially identified tissues in whole organs and organismsPossible reference: Bhatia, HS. et al. (2022) Spatial proteomics in three-dimensional intact specimens., Cell, PMID 36563667
PXD034026 Dataset with its publication pending (from jPOST)Dataset title: A cell type-specific proteomics uncovers a guard cell-specific RAF15-SnRK2.6/OST1 kinase cascadePossible reference: Wang, H. et al. (2023) Cell type-specific proteomics uncovers a RAF15-SnRK2.6/OST1 kinase cascade in guard cells., J Integr Plant Biol, PMID 37226855
PXD034022 Dataset with its publication pending (from PRIDE)Dataset title: SimPLIT: Simplified sample preparation for large-scale isobaric tagging proteomicsPossible reference: Sialana, FJ. et al. (2022) SimPLIT: Simplified Sample Preparation for Large-Scale Isobaric Tagging Proteomics., J Proteome Res, PMID 35848491
PXD034018 Dataset with its publication pending (from jPOST)Dataset title: Absolute quantification of ribosome subunitsPossible reference: Waite, CJ. et al. (2021) Resource Allocation During the Transition to Diazotrophy in Klebsiella oxytoca., Front Microbiol, PMID 34434180
PXD034016 Dataset with its publication pending (from PRIDE)Dataset title: High throughput screen of 100,000 small molecules in C9orf72 ALS neuronsPossible reference: Luteijn, MJ. et al. (2025) High-throughput screen of 100 000 small molecules in C9ORF72 ALS neurons identifies spliceosome modulators that mobilize G4C2 repeat RNA into nuclear export and repeat associated non-canonical translation., Nucleic Acids Res, PMID 40207633
PXD034010 Dataset with its publication pending (from PRIDE)Dataset title: Posttranslational splicing modifications as a key mechanism in cytarabine resistance in AMLPossible reference: Morales, ML. et al. (2023) Posttranslational splicing modifications as a key mechanism in cytarabine resistance in acute myeloid leukemia., Leukemia, PMID 37422594
PXD034002 Dataset with its publication pending (from iProX)Dataset title: Caffeine alleviates high altitude pulmonary edema via mitochondrial quality control processPossible reference: Tian, L. et al. (2023) Low-dose of caffeine alleviates high altitude pulmonary edema via regulating mitochondrial quality control process in AT1 cells., Front Pharmacol, PMID 37081967
PXD033999 no publication (from MassIVE)Dataset title: GTSF1 accelerates target RNA cleavage by PIWI-clade Argonaute proteinsPossible reference: Arif, A. et al. (2022) GTSF1 accelerates target RNA cleavage by PIWI-clade Argonaute proteins., Nature, PMID 35772669
PXD033978 Dataset with its publication pending (from PRIDE)Dataset title: Charting the proteoform landscape of serum proteins in individual donors by high-resolution native mass spectrometryPossible reference: Cramer, DAT. et al. (2022) Charting the Proteoform Landscape of Serum Proteins in Individual Donors by High-Resolution Native Mass Spectrometry., Anal Chem, PMID 36074704
PXD033971 Dataset with its publication pending (from PRIDE)Dataset title: Hypoxia increases the methylated histones to prevent histone clipping and redistribution of heterochromatin during Raf-induced senescence.Possible reference: Chang, S. et al. (2025) Hypoxia increases methylated histones to prevent histone clipping and heterochromatin redistribution during Raf-induced senescence., Nucleic Acids Res, PMID 39660649
PXD033969 Dataset with its publication pending (from PRIDE)Dataset title: Milk proteins as a feed restriction signature in dairy cowsPossible reference: Leduc, A. et al. (2022) Milk proteins as a feed restriction signature indicating the metabolic adaptation of dairy cows., Sci Rep, PMID 36344510
PXD033942 Dataset with its publication pending (from PRIDE)Dataset title: Identification of myeloid-derived growth factor as a mechanically-induced, growth-promoting angiocrine signal for human hepatocytesPossible reference: Große-Segerath, L. et al. (2024) Identification of myeloid-derived growth factor as a mechanically-induced, growth-promoting angiocrine signal for human hepatocytes., Nat Commun, PMID 38316785
PXD033940 Dataset with its publication pending (from PRIDE)Dataset title: An optimized proteomics approach reveals novel alternative proteins in mouse liver developmentPossible reference: Yang, Y. et al. (2023) An Optimized Proteomics Approach Reveals Novel Alternative Proteins in Mouse Liver Development., Mol Cell Proteomics, PMID 36494044
PXD033923 Dataset with its publication pending (from PRIDE)Dataset title: The Human Nse5 Orthologue SIMC1 Localizes SMC5/6 to Polyomavirus Replication CentersPossible reference: Oravcová, M. et al. (2022) The Nse5/6-like SIMC1-SLF2 complex localizes SMC5/6 to viral replication centers., Elife, PMID 36373674
PXD033906 Dataset with its publication pending (from PRIDE)Dataset title: Comparative proteomics of extracellular vesicles derived from wildtype or mutant EMCV-infected cellsPossible reference: Lim, JW. et al. (2012) Restoration of full-length APC protein in SW480 colon cancer cells induces exosome-mediated secretion of DKK-4., Electrophoresis, PMID 22740476
PXD033905 Dataset with its publication pending (from PRIDE)Dataset title: Data from a proteomic comparative analysis highlight differential adaptation of Lactobacillus delbrueckii subsp. bulgaricus to cow milk versus to soy milk environmentsPossible reference: Jan, G. et al. (2022) Data from a proteomic comparative analysis highlight differential adaptation of Lactobacillus delbrueckii subsp. bulgaricus to cow milk versus to soy milk environments., Data Brief, PMID 36426081
PXD033901 Dataset with its publication pending (from PRIDE)Dataset title: Optogenetic rejuvenation of mitochondrial membrane potential extends C. elegans lifespanPossible reference: Berry, BJ. et al. (2023) Optogenetic rejuvenation of mitochondrial membrane potential extends C. elegans lifespan., Nat Aging, PMID 36873708
PXD033887 Dataset with its publication pending (from PRIDE)Dataset title: Proteome of the wood decay fungus Fomitopsis pinicola is altered by substratePossible reference: Sabat, G. et al. (2022) Proteome of the Wood Decay Fungus Fomitopsis pinicola Is Altered by Substrate., Microbiol Resour Announc, PMID 35969048
PXD033874 Dataset with its publication pending (from PRIDE)Dataset title: GFP pulldown for the RiboVD projectPossible reference: Lin, H. et al. (2022) Improving Lipophagy by Restoring Rab7 Cycle: Protective Effects of Quercetin on Ethanol-Induced Liver Steatosis., Nutrients, PMID 35277017
PXD033871 Dataset with its publication pending (from PRIDE)Dataset title: A cooperative organelle biogenesis program in mammalian cellsPossible reference: Perera, RM. et al. (2016) The Lysosome as a Regulatory Hub., Annu Rev Cell Dev Biol, PMID 27501449
PXD033868 Dataset with its publication pending (from PRIDE)Dataset title: MS²Rescore: Data-driven rescoring dramatically boosts immunopeptide identification ratesPossible reference: Declercq, A. et al. (2022) MS2Rescore: Data-Driven Rescoring Dramatically Boosts Immunopeptide Identification Rates., Mol Cell Proteomics, PMID 35803561
PXD033863 Dataset with its publication pending (from PRIDE)Dataset title: Sox9 directs divergent epigenomic states in brain tumor subtypesPossible reference: Sardar, D. et al. (2022) Sox9 directs divergent epigenomic states in brain tumor subtypes., Proc Natl Acad Sci U S A, PMID 35858326
PXD033858 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic network of antibiotic-induced outer membrane vesicles released by extensively drug-resistant Elizabethkingia anophelisPossible reference: Chiang, MH. et al. (2022) Proteomic Network of Antibiotic-Induced Outer Membrane Vesicles Released by Extensively Drug-Resistant Elizabethkingia anophelis., Microbiol Spectr, PMID 35852325
PXD033843 Dataset with its publication pending (from PRIDE)Dataset title: Duplicated ribosomal protein paralogs promote alternative translation and drug resistancePossible reference: Malik Ghulam, M. et al. (2022) Duplicated ribosomal protein paralogs promote alternative translation and drug resistance., Nat Commun, PMID 35999447
PXD033836 Dataset with its publication pending (from PRIDE)Dataset title: The DREAM complex functions as conserved master regulator of somatic DNA repair capacitiesPossible reference: Bujarrabal-Dueso, A. et al. (2023) The DREAM complex functions as conserved master regulator of somatic DNA-repair capacities., Nat Struct Mol Biol, PMID 36959262
PXD033787 no publication (from MassIVE)Dataset title: Coenzyme A binding sites induce proximal acylation across protein familiesPossible reference: Carrico, C. et al. (2023) Coenzyme A binding sites induce proximal acylation across protein families., Sci Rep, PMID 36977698
PXD033762 Dataset with its publication pending (from PRIDE)Dataset title: Mebendazole Inhibits Histoplasma capsulatum In Vitro Growth and Decreases Mitochondrion and Cytoskeleton Protein Levels Possible reference: Almeida, MA. et al. (2023) Mebendazole Inhibits Histoplasma capsulatum In Vitro Growth and Decreases Mitochondrion and Cytoskeleton Protein Levels., J Fungi (Basel), PMID 36983553
PXD033755 Dataset with its publication pending (from iProX)Dataset title: Proteome-wide analysis of protein thermal stability in ArabidopsisPossible reference: Volkening, JD. et al. (2019) Proteome-wide Analysis of Protein Thermal Stability in the Model Higher Plant Arabidopsis thaliana., Mol Cell Proteomics, PMID 30401684
PXD033752 Dataset with its publication pending (from PRIDE)Dataset title: Salivary orosomucoid 1 as a biomarker of hepatitis B associated hepatocellular carcinomaPossible reference: He, J. et al. (2022) Salivary orosomucoid 1 as a biomarker of hepatitis B associated hepatocellular carcinoma., Sci Rep, PMID 36096917
PXD033741 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic Characterization of Epithelial Ovarian Cancer Delineates Molecular Signatures and Therapeutic Targets in Distinct Histological SubtypesPossible reference: Gong, TT. et al. (2023) Proteomic characterization of epithelial ovarian cancer delineates molecular signatures and therapeutic targets in distinct histological subtypes., Nat Commun, PMID 38016970
PXD033731 Dataset with its publication pending (from jPOST)Dataset title: TRIM22 negatively regulates MHC-II expressionPossible reference: Inoue, A. et al. (2022) TRIM22 negatively regulates MHC-II expression., Biochim Biophys Acta Mol Cell Res, PMID 35777501
PXD033728 Dataset with its publication pending (from iProX)Dataset title: Serum Exosome Proteome Differentiate Early Stage Liver FibrosisPossible reference: Ye, B. et al. (2022) Differential proteomic analysis of plasma-derived exosomes as diagnostic biomarkers for chronic HBV-related liver disease., Sci Rep, PMID 36002595
PXD033722 . . . (from MassIVE)Dataset title: Proteome Remodeling of the Eye Lens at 50 Years Identified with Data-Independent AcquisitionPossible reference: Cantrell, LS. et al. (2023) Proteome Remodeling of the Eye Lens at 50 Years Identified With Data-Independent Acquisition., Mol Cell Proteomics, PMID 36470534
PXD033692 Dataset with its publication pending (from PRIDE)Dataset title: Metaexoproteomics identifies active plant-microbe interactions operating in the rhizospherePossible reference: Lidbury, IDEA. et al. (2022) Stimulation of Distinct Rhizosphere Bacteria Drives Phosphorus and Nitrogen Mineralization in Oilseed Rape under Field Conditions., mSystems, PMID 35862821
PXD033687 Dataset with its publication pending (from PRIDE)Dataset title: METATAXONOMIC AND METAPROTEOMIC PROFILING OF THE ORAL MICROBIOME IN ORAL LICHEN PLANUSPossible reference: Bankvall, M. et al. (2023) Metataxonomic and metaproteomic profiling of the oral microbiome in oral lichen planus - a pilot study., J Oral Microbiol, PMID 36605405
PXD033673 Dataset with its publication pending (from PRIDE)Dataset title: Neddylation tunes peripheral blood mononuclear cells immune response in COVID-19 patientsPossible reference: Serrano-Maciá, M. et al. (2022) Neddylation tunes peripheral blood mononuclear cells immune response in COVID-19 patients., Cell Death Discov, PMID 35831294
PXD033654 no publication (from MassIVE)Dataset title: Streptomyces tenebrarius proteomicsPossible reference: Linardi, D. et al. (2022) Proteomining-Based Elucidation of Natural Product Biosynthetic Pathways in Streptomyces., Front Microbiol, PMID 35898901
PXD033644 Dataset with its publication pending (from PRIDE)Dataset title: Transforming chemical proteomics into high-throughput method using SP2E workflow.Possible reference: Becker, T. et al. (2022) Transforming Chemical Proteomics Enrichment into a High-Throughput Method Using an SP2E Workflow., JACS Au, PMID 35911458
PXD033640 Dataset with its publication pending (from PRIDE)Dataset title: Plasmid manipulation of bacterial behaviour through translational regulatory crosstalkPossible reference: Thompson, CMA. et al. (2023) Plasmids manipulate bacterial behaviour through translational regulatory crosstalk., PLoS Biol, PMID 36787297
PXD033616 Dataset with its publication pending (from PRIDE)Dataset title: Druggable Serine Proteases of Leishmania by Activityâ€Based Protein ProfilingPossible reference: Porta, EOJ. et al. (2022) Discovery of Leishmania Druggable Serine Proteases by Activity-Based Protein Profiling., Front Pharmacol, PMID 35910377
PXD033586 Dataset with its publication pending (from PRIDE)Dataset title: The marine Bacteroidetes Muricauda sp. MAR_2010_75 digests diatom β-mannanPossible reference: Beidler, I. et al. (2023) Marine bacteroidetes use a conserved enzymatic cascade to digest diatom β-mannan., ISME J, PMID 36411326
PXD033585 Dataset with its publication pending (from PRIDE)Dataset title: Functional characterization of SH3P2 from Arabidopsis thalianaPossible reference: Zhuang, X. et al. (2014) Autophagosome biogenesis in plants: roles of SH3P2., Autophagy, PMID 24598432
PXD033583 Dataset with its publication pending (from PRIDE)Dataset title: RcgA and RcgR, two novel proteins involved in conjugative transfer of rhizobial plasmidsPossible reference: Castellani, LG. et al. (2022) RcgA and RcgR, Two Novel Proteins Involved in the Conjugative Transfer of Rhizobial Plasmids., mBio, PMID 36073816
PXD033571 no publication (from MassIVE)Dataset title: Shared and distinctive neighborhoods of emerin and LBR revealed by proximity labeling and quantitative proteomicsPossible reference: Cheng, LC. et al. (2022) Shared and Distinctive Neighborhoods of Emerin and Lamin B Receptor Revealed by Proximity Labeling and Quantitative Proteomics., J Proteome Res, PMID 35972904
PXD033560 Dataset with its publication pending (from iProX)Dataset title: Proteomic Analysis of Retinal Degeneration in the Rd10 MousePossible reference: Ly, A. et al. (2016) Proteomic Profiling Suggests Central Role Of STAT Signaling during Retinal Degeneration in the rd10 Mouse Model., J Proteome Res, PMID 26939627
PXD033553 Dataset with its publication pending (from PRIDE)Dataset title: Role of the two-component system CiaRH in the regulation of efflux pump SatAB and its correlation with fluoroquinolones susceptibilityPossible reference: Yang, X. et al. (2022) Role of the Two-Component System CiaRH in the Regulation of Efflux Pump SatAB and Its Correlation with Fluoroquinolone Susceptibility., Microbiol Spectr, PMID 35638854
PXD033545 Dataset with its publication pending (from PRIDE)Dataset title: Naringenin Suppresses BEAS-2B-derived Exosomal Cargoes Disorder Caused by Cigarette Smoke Extract thereby Inhibiting M1 Macrophage PolarizationPossible reference: Chen, Z. et al. (2022) Naringenin suppresses BEAS-2B-derived extracellular vesicular cargoes disorder caused by cigarette smoke extract thereby inhibiting M1 macrophage polarization., Front Immunol, PMID 35924248
PXD033530 Dataset with its publication pending (from PRIDE)Dataset title: PARP1-SNAI2 Transcription Axis Drives Resistance to PARP Inhibitor, TalazoparibPossible reference: Ding, X. et al. (2022) PARP1-SNAI2 transcription axis drives resistance to PARP inhibitor, Talazoparib., Sci Rep, PMID 35864202
PXD033528 Dataset with its publication pending (from PRIDE)Dataset title: A Conformation specific Nanobody Targeting the NMN-activated State of SARM1Possible reference: Hou, YN. et al. (2022) A conformation-specific nanobody targeting the nicotinamide mononucleotide-activated state of SARM1., Nat Commun, PMID 36550129
PXD033509 Dataset with its publication pending (from PRIDE)Dataset title: Interacting partners of Trypanosoma brucei RBSR1 and RBSR2Possible reference: Waithaka, A. et al. (2022) Sequences and proteins that influence mRNA processing in Trypanosoma brucei: Evolutionary conservation of SR-domain and PTB protein functions., PLoS Negl Trop Dis, PMID 36288402
PXD033507 Dataset with its publication pending (from PRIDE)Dataset title: Aedes aegypti CLIPB9 activates prophenoloxidase-3 in the presence of CLIPA14 after fungal infectionPossible reference: Ji, Y. et al. (2022) Aedes aegypti CLIPB9 activates prophenoloxidase-3 in the presence of CLIPA14 after fungal infection., Front Immunol, PMID 35967454
PXD033506 Dataset with its publication pending (from PRIDE)Dataset title: GLH/VASA helicases promote germ granule formation to ensure the fidelity of piRNA-mediated transcriptome surveillancePossible reference: Chen, W. et al. (2022) GLH/VASA helicases promote germ granule formation to ensure the fidelity of piRNA-mediated transcriptome surveillance., Nat Commun, PMID 36085149
PXD033488 Dataset with its publication pending (from PRIDE)Dataset title: Human RIPK3 C-lobe phosphorylation is essential for necroptotic signalingPossible reference: Meng, Y. et al. (2022) Human RIPK3 C-lobe phosphorylation is essential for necroptotic signaling., Cell Death Dis, PMID 35739084
PXD033480 Dataset with its publication pending (from iProX)Dataset title: fish-Cynoglossus semilaevis skin mucus and exosome proteomePossible reference: Zhao, N. et al. (2021) Proteomics of mucosal exosomes of Cynoglossus semilaevis altered when infected by Vibrio harveyi., Dev Comp Immunol, PMID 33582105
PXD033476 Dataset with its publication pending (from PRIDE)Dataset title: A proteomics approach reveals digestive and nutritional responses to food intake in anadromous Coilia nasusPossible reference: Ma, F. et al. (2022) A proteomics approach reveals digestive and nutritional responses to food intake in anadromous Coilia nasus., Comp Biochem Physiol Part D Genomics Proteomics, PMID 35594610
PXD033461 Dataset with its publication pending (from iProX)Dataset title: Proteomic and Phosphoproteomic Analyses Reveal Gibel Carp Responses to Cyprinid Herpesvirus 2 InfectionPossible reference: Xu, C. et al. (2022) Proteomic and Phosphoproteomic Analyses Reveal Gibel Carp Responses to Cyprinid Herpesvirus 2 Infection., J Proteome Res, PMID 35792615
PXD033459 Dataset with its publication pending (from PRIDE)Dataset title: Native SEC-MS of the human HT29 colon adenocarcinoma cell line treated with the HSP90 inhibitor tanespimycin (17-AAG)Possible reference: Samant, RS. et al. (2023) Native Size-Exclusion Chromatography-Based Mass Spectrometry Reveals New Components of the Early Heat Shock Protein 90 Inhibition Response Among Limited Global Changes., Mol Cell Proteomics, PMID 36549590
PXD033458 no publication (from MassIVE)Dataset title: Histone malonylation is regulated by SIRT5 and KAT2APossible reference: Zhang, R. et al. (2023) Histone malonylation is regulated by SIRT5 and KAT2A., iScience, PMID 36879797
PXD033452 Dataset with its publication pending (from PRIDE)Dataset title: SARS-CoV-2 proteins BioID in HEK293Possible reference: Terracciano, R. et al. (2021) Mapping the SARS-CoV-2-Host Protein-Protein Interactome by Affinity Purification Mass Spectrometry and Proximity-Dependent Biotin Labeling: A Rational and Straightforward Route to Discover Host-Directed Anti-SARS-CoV-2 Therapeutics., Int J Mol Sci, PMID 33430309
PXD033449 Dataset with its publication pending (from PRIDE)Dataset title: Integrative proteomic and physiological analyses of the molecular response to dessication-stress in Auricularia fibrilliferaPossible reference: Guo, H. et al. (2022) Integrative proteomic and physiological analyses of the molecular response to dessication-stress in Auricularia fibrillifera., Front Plant Sci, PMID 36212373
PXD033446 Dataset with its publication pending (from PRIDE)Dataset title: Functional crosstalk between the cohesin loader and chromatin remodelersPossible reference: Muñoz, S. et al. (2022) Functional crosstalk between the cohesin loader and chromatin remodelers., Nat Commun, PMID 36509793
PXD033440 Dataset with its publication pending (from PRIDE)Dataset title: Loss of colonic primary cilia promotes inflammation and carcinogenesisPossible reference: Paul, C. et al. (2022) Loss of primary cilia promotes inflammation and carcinogenesis., EMBO Rep, PMID 36281991
PXD033418 Dataset with its publication pending (from PRIDE)Dataset title: Metaproteome plasticity sheds light on the ecology of the rumen microbiome and its connection to host traitsPossible reference: Sasson, G. et al. (2022) Metaproteome plasticity sheds light on the ecology of the rumen microbiome and its connection to host traits., ISME J, PMID 35974086
PXD033412 Dataset with its publication pending (from PRIDE)Dataset title: Hepatic urea, creatinine and uric acid metabolism in dairy cows with divergent milk urea concentrationsPossible reference: Prahl, MC. et al. (2022) Hepatic urea, creatinine and uric acid metabolism in dairy cows with divergent milk urea concentrations., Sci Rep, PMID 36266429
PXD033407 Dataset with its publication pending (from PRIDE)Dataset title: Selective modulation of cell surface proteins during vaccinia infection: a resource for identifying viral immune evasion strategiesPossible reference: Depierreux, DM. et al. (2022) Selective modulation of cell surface proteins during vaccinia infection: A resource for identifying viral immune evasion strategies., PLoS Pathog, PMID 35727847
PXD033404 Dataset with its publication pending (from iProX)Dataset title: Proteomics of AH sample from Diabetic Macular EdemaPossible reference: Han, R. et al. (2022) Proteome Changes Associated with the VEGFR Pathway and Immune System in Diabetic Macular Edema Patients at Different Diabetic Retinopathy Stages., Curr Eye Res, PMID 35435079
PXD033403 Dataset with its publication pending (from jPOST)Dataset title: Time series of E. coli whole proteomic analysis before and after severe heat shockPossible reference: Shay, JW. et al. (2016) Abstracts from the 3rd International Genomic Medicine Conference (3rd IGMC 2015) : Jeddah, Kingdom of Saudi Arabia. 30 November - 3 December 2015., BMC Genomics, PMID 27454254
PXD033394 Dataset with its publication pending (from PRIDE)Dataset title: Angel2 phosphatase activity is required for non-canonical mitochondrial RNA processingPossible reference: Clemente, P. et al. (2022) ANGEL2 phosphatase activity is required for non-canonical mitochondrial RNA processing., Nat Commun, PMID 36180430
PXD033387 Dataset with its publication pending (from PRIDE)Dataset title: Interactions between paralogous bacterial enhancer binding proteins enable metal-dependent regulation of alternative nitrogenases in Azotobacter vinelandiiPossible reference: Appia-Ayme, C. et al. (2022) Interactions between paralogous bacterial enhancer-binding proteins enable metal-dependent regulation of alternative nitrogenases in Azotobacter vinelandii., Mol Microbiol, PMID 35718936
PXD033375 Dataset with its publication pending (from PRIDE)Dataset title: Analysis of differentially abundant proteins in sugarcane during red rot infectionPossible reference: Ashwin, NMR. et al. (2017) Comparative secretome analysis of Colletotrichum falcatum identifies a cerato-platanin protein (EPL1) as a potential pathogen-associated molecular pattern (PAMP) inducing systemic resistance in sugarcane., J Proteomics, PMID 28546091
PXD033362 Dataset with its publication pending (from jPOST)Dataset title: Bioenergetic phenotyping of DEN-induced hepatocellular carcinoma reveals a link between adenylate kinase isoform expression and reduced complex I-supported respiration. Possible reference: McLaughlin, KL. et al. (2022) Bioenergetic Phenotyping of DEN-Induced Hepatocellular Carcinoma Reveals a Link Between Adenylate Kinase Isoform Expression and Reduced Complex I-Supported Respiration., Front Oncol, PMID 35756609
PXD033360 Dataset with its publication pending (from PRIDE)Dataset title: Korean Lung Adenocarcinoma proteogenomicsPossible reference: Kim, H. et al. (2024) Proteogenomic characterization identifies clinical subgroups in EGFR and ALK wild-type never-smoker lung adenocarcinoma., Exp Mol Med, PMID 39300154
PXD033356 Dataset with its publication pending (from PRIDE)Dataset title: NCOA4-mediated ferritinophagy is a pancreatic cancer dependency via maintenance of iron bioavailability for iron-sulfur cluster proteinsPossible reference: Santana-Codina, N. et al. (2022) NCOA4-Mediated Ferritinophagy Is a Pancreatic Cancer Dependency via Maintenance of Iron Bioavailability for Iron-Sulfur Cluster Proteins., Cancer Discov, PMID 35771492
PXD033353 Dataset with its publication pending (from PRIDE)Dataset title: UHMK1 is a novel splicing regulatory kinasePossible reference: Arfelli, VC. et al. (2023) UHMK1 is a novel splicing regulatory kinase., J Biol Chem, PMID 36803961
PXD033351 Dataset with its publication pending (from PRIDE)Dataset title: Pan-cancer tumor-specific antigens and membrane targets from transposable elementsPossible reference: Shah, NM. et al. (2023) Pan-cancer analysis identifies tumor-specific antigens derived from transposable elements., Nat Genet, PMID 36973455
PXD033348 Dataset with its publication pending (from PRIDE)Dataset title: A toolbox for systematic discovery of stable and transient protein interactors in baker’s yeastPossible reference: Fenech, EJ. et al. (2023) A toolbox for systematic discovery of stable and transient protein interactors in baker's yeast., Mol Syst Biol, PMID 36651308
PXD033341 Dataset with its publication pending (from PRIDE)Dataset title: Identification of lysine succinylome and acetylome in vancomycin-intermediate Staphylococcus aureus XN108Possible reference: Tan, L. et al. (2022) Identification of Lysine Succinylome and Acetylome in the Vancomycin-Intermediate Staphylococcus aureus XN108., Microbiol Spectr, PMID 36374118
PXD033335 Dataset with its publication pending (from PRIDE)Dataset title: Integrated Multiomics analysis to infer covid 19 biological insightsPossible reference: Agamah, FE. et al. (2022) Computational approaches for network-based integrative multi-omics analysis., Front Mol Biosci, PMID 36452456
PXD033334 Dataset with its publication pending (from PRIDE)Dataset title: Human RNase 4 Improves mRNA Sequence Characterization by LC-MS/MS.Possible reference: Wolf, EJ. et al. (2022) Human RNase 4 improves mRNA sequence characterization by LC-MS/MS., Nucleic Acids Res, PMID 35871301
PXD033277 Dataset with its publication pending (from jPOST)Dataset title: Antibiotic-like Activity of Atomic Layer Boron Nitride for Combating Resistant BacteriaPossible reference: Pan, Y. et al. (2022) Antibiotic-Like Activity of Atomic Layer Boron Nitride for Combating Resistant Bacteria., ACS Nano, PMID 35511445
PXD033257 Dataset with its publication pending (from PRIDE)Dataset title: Unveiling the mechanism of action of nature-inspired anti-cancer compounds using a multi-Omics approachPossible reference: Soares, NC. et al. (2022) Unveiling the mechanism of action of nature-inspired anti-cancer compounds using a multi-omics approach., J Proteomics, PMID 35728772
PXD033250 Dataset with its publication pending (from PRIDE)Dataset title: Virulence induction in Pseudomonas aeruginosa under inorganic phosphate limitation: a proteomics perspectivePossible reference: Matilla, MA. et al. (2022) Virulence Induction in Pseudomonas aeruginosa under Inorganic Phosphate Limitation: a Proteomics Perspective., Microbiol Spectr, PMID 36354317
PXD033249 Dataset with its publication pending (from PRIDE)Dataset title: Silent recognition by Toll-like receptor 5 of flagellins from human gut commensal bacteriaPossible reference: Clasen, SJ. et al. (2023) Silent recognition of flagellins from human gut commensal bacteria by Toll-like receptor 5., Sci Immunol, PMID 36608151
PXD033234 Dataset with its publication pending (from PRIDE)Dataset title: CryoEM structure of mitochondrial complex I from the thermophilic eukaryote Chaetomium thermophilumPossible reference: Laube, E. et al. (2022) Conformational changes in mitochondrial complex I of the thermophilic eukaryote Chaetomium thermophilum., Sci Adv, PMID 36427319
PXD033231 Dataset with its publication pending (from PRIDE)Dataset title: Aedes aegypti Aag-2 cells proteome modulation in response to Chikungunya virus infectionPossible reference: Vasconcellos, AF. et al. (2020) Dynamic proteomic analysis of Aedes aegypti Aag-2 cells infected with Mayaro virus., Parasit Vectors, PMID 32522239
PXD033230 Dataset with its publication pending (from PRIDE)Dataset title: Glycosaminoglycan linkage region of urinary bikunin as a potentially useful biomarker for β3GalT6-deficient spondylodysplastic Ehlers-Danlos syndromePossible reference: Nikpour, M. et al. (2022) Glycosaminoglycan linkage region of urinary bikunin as a potentially useful biomarker for β3GalT6-deficient spondylodysplastic Ehlers-Danlos syndrome., JIMD Rep, PMID 36101818
PXD033226 Dataset with its publication pending (from PRIDE)Dataset title: Enrichment and Fragmentation Approaches for Enhanced Detection and Characterization of Endogenous Glycosylated NeuropeptidesPossible reference: Phetsanthad, A. et al. (2023) Enrichment and fragmentation approaches for enhanced detection and characterization of endogenous glycosylated neuropeptides., Proteomics, PMID 35906894
PXD033218 Dataset with its publication pending (from iProX)Dataset title: Data-Independent Acquisition-Based Mass Spectrometry (DIA-MS) for Quantitative Analysis of Human Intestinal Ischemia/reperfusionPossible reference: Huang, A. et al. (2022) Data-Independent Acquisition-Based Mass Spectrometry (DIA-MS) for Quantitative Analysis of Human Intestinal Ischemia/Reperfusion., Appl Biochem Biotechnol, PMID 35666382
PXD033201 Dataset with its publication pending (from PRIDE)Dataset title: On the compatibility of fish meal replacements in aquafeeds for rainbow trout. A combined metabolomic, proteomic and histological study.Possible reference: Palomba, A. et al. (2022) On the Compatibility of Fish Meal Replacements in Aquafeeds for Rainbow Trout. A Combined Metabolomic, Proteomic and Histological Study., Front Physiol, PMID 35846007
PXD033158 no publication (from MassIVE)Dataset title: Genentech IBD Fecal ProteomicsPossible reference: Casavant, E. et al. (2020) Proteomic Discovery of Stool Protein Biomarkers for Distinguishing Pediatric Inflammatory Bowel Disease Flares., Clin Gastroenterol Hepatol, PMID 31499250
PXD033157 Dataset with its publication pending (from PRIDE)Dataset title: Evidence for a widespread third system for bacterial polysaccharide export across the outer membrane comprising a composite OPX/β-barrel transloconPossible reference: Schwabe, J. et al. (2022) Evidence for a Widespread Third System for Bacterial Polysaccharide Export across the Outer Membrane Comprising a Composite OPX/β-Barrel Translocon., mBio, PMID 35972145
PXD033155 no publication (from MassIVE)Dataset title: Proteomic insight into the interaction of Paenibacillus larvae with honey bee larvae before capping collected from an American foulbrood outbreakPossible reference: Erban, T. et al. (2023) Proteomic insight into the interaction of Paenibacillus larvae with honey bee larvae before capping collected from an American foulbrood outbreak: Pathogen proteins within the host, lysis signatures and interaction markers., Proteomics, PMID 35946602
PXD033148 Dataset with its publication pending (from PRIDE)Dataset title: human lung adenocarcinoma cell lines TMT based proteomicsPossible reference: Végvári, Á. et al. (2022) Single Cell Proteomics Using Multiplexed Isobaric Labeling for Mass Spectrometric Analysis., Methods Mol Biol, PMID 34766268
PXD033125 Dataset with its publication pending (from PRIDE)Dataset title: GRAMD1C regulates autophagy initiation and mitochondrial bioenergeticsPossible reference: Ng, MYW. et al. (2022) The cholesterol transport protein GRAMD1C regulates autophagy initiation and mitochondrial bioenergetics., Nat Commun, PMID 36270994
PXD033120 Dataset with its publication pending (from PRIDE)Dataset title: The protein phosphatase 2A holoenzyme is a key regulator of starch metabolism and bradyzoite differentiation in Toxoplasma gondiiPossible reference: Wang, JL. et al. (2022) The protein phosphatase 2A holoenzyme is a key regulator of starch metabolism and bradyzoite differentiation in Toxoplasma gondii., Nat Commun, PMID 36476594
PXD033117 Dataset with its publication pending (from PRIDE)Dataset title: Effect of Sample Transportation on the Proteome of Human Circulating Blood Extracellular VesiclesPossible reference: Uldry, AC. et al. (2022) Effect of Sample Transportation on the Proteome of Human Circulating Blood Extracellular Vesicles., Int J Mol Sci, PMID 35562906
PXD033106 no publication (from MassIVE)Dataset title: HLA-II immunopeptidome profiling and deep learning reveal features of antigenicity to inform antigen discoveryPossible reference: Stražar, M. et al. (2023) HLA-II immunopeptidome profiling and deep learning reveal features of antigenicity to inform antigen discovery., Immunity, PMID 37301199
PXD033102 Dataset with its publication pending (from PRIDE)Dataset title: Light Quality Modulates Plant Cold Response and Freezing TolerancePossible reference: Kinmonth-Schultz, HA. et al. (2013) Circadian clock-regulated physiological outputs: dynamic responses in nature., Semin Cell Dev Biol, PMID 23435352
PXD033098 Dataset with its publication pending (from iProX)Dataset title: Proteome in Tibetan sheep testesPossible reference: Wang, X. et al. (2019) Characterization of GLOD4 in Leydig Cells of Tibetan Sheep During Different Stages of Maturity., Genes (Basel), PMID 31614839
PXD033071 Dataset with its publication pending (from PRIDE)Dataset title: E. coli toxin YjjJ (HipH) is a Ser/Thr protein kinase that impacts cell division, carbon metabolism and ribosome assemblyPossible reference: Gratani, FL. et al. (2023) E. coli Toxin YjjJ (HipH) Is a Ser/Thr Protein Kinase That Impacts Cell Division, Carbon Metabolism, and Ribosome Assembly., mSystems, PMID 36537800
PXD033068 Dataset with its publication pending (from PRIDE)Dataset title: The chromatin-regulating CoREST complex is animal specific and essential for development in the cnidarian Nematostella vectensisPossible reference: Gahan, JM. et al. (2022) A developmental role for the chromatin-regulating CoREST complex in the cnidarian Nematostella vectensis., BMC Biol, PMID 35999597
PXD033067 Dataset with its publication pending (from PRIDE)Dataset title: Mapping subcellular localizations of unannotated microproteins with MicroIDPossible reference: Na, Z. et al. (2022) Mapping subcellular localizations of unannotated microproteins and alternative proteins with MicroID., Mol Cell, PMID 35905735
PXD033064 Dataset with its publication pending (from PRIDE)Dataset title: Mitochondria regulate intracellular coenzyme Q transport and ferroptotic resistance via STARD7Possible reference: Deshwal, S. et al. (2023) Mitochondria regulate intracellular coenzyme Q transport and ferroptotic resistance via STARD7., Nat Cell Biol, PMID 36658222
PXD033060 Dataset with its publication pending (from PRIDE)Dataset title: Proteomics of the dentate gyrus reveals semantic dementia specific molecular pathologyPossible reference: Mol, MO. et al. (2022) Proteomics of the dentate gyrus reveals semantic dementia specific molecular pathology., Acta Neuropathol Commun, PMID 36578035
PXD033059 Dataset with its publication pending (from PRIDE)Dataset title: SDR enzymes oxidize specific lipidic alkynylcarbinols into cytotoxic protein-reactive speciesPossible reference: Demange, P. et al. (2022) SDR enzymes oxidize specific lipidic alkynylcarbinols into cytotoxic protein-reactive species., Elife, PMID 35535493
PXD033058 Dataset with its publication pending (from PRIDE)Dataset title: Label-free proteomics test on TGF-β1-induced human mesothelial cell (Met5A) treated with or without Fushen GranulePossible reference: Jiang, C. et al. (2020) Fushen Granule, A Traditional Chinese Medicine, ameliorates intestinal mucosal dysfunction in peritoneal dialysis rat model by regulating p38MAPK signaling pathway., J Ethnopharmacol, PMID 31877365
PXD033053 Dataset with its publication pending (from PRIDE)Dataset title: Fish hydrolysate supplementation prevents stress-induced dysregulation of hippocampal proteins relative to mitochondrial metabolism and neuronal network in micePossible reference: Le Faouder, J. et al. (2022) Fish Hydrolysate Supplementation Prevents Stress-Induced Dysregulation of Hippocampal Proteins Relative to Mitochondrial Metabolism and the Neuronal Network in Mice., Foods, PMID 35681342
PXD033048 Dataset with its publication pending (from PRIDE)Dataset title: Arginine dimethylation and liquid-liquid phase separationPossible reference: Gill, AL. et al. (2021) Hypothesis and Theory: Roles of Arginine Methylation in C9orf72-Mediated ALS and FTD., Front Cell Neurosci, PMID 33833668
PXD033045 Dataset with its publication pending (from PRIDE)Dataset title: Nucleoporins facilitate ORC loading onto chromatinPossible reference: Richards, L. et al. (2022) Nucleoporins facilitate ORC loading onto chromatin., Cell Rep, PMID 36351393
PXD033042 Dataset with its publication pending (from PRIDE)Dataset title: p166 links membrane and intramitochondrial modules of the trypanosomal tripartite attachment complexPossible reference: Schimanski, B. et al. (2022) p166 links membrane and intramitochondrial modules of the trypanosomal tripartite attachment complex., PLoS Pathog, PMID 35709300
PXD033036 Dataset with its publication pending (from PRIDE)Dataset title: Photo-ANA enables profiling of host–bacteria protein interactions during infectionPossible reference: Li, XM. et al. (2023) Photo-ANA enables profiling of host-bacteria protein interactions during infection., Nat Chem Biol, PMID 36702958
PXD033029 Dataset with its publication pending (from PRIDE)Dataset title: Mouse PolG Mutant Liver ProteomePossible reference: Trease, AJ. et al. (2024) Mitochondrial DNA Instability Supersedes Parkin Mutations in Driving Mitochondrial Proteomic Alterations and Functional Deficits in Polg Mutator Mice., Int J Mol Sci, PMID 38928146
PXD033022 Dataset with its publication pending (from PRIDE)Dataset title: Mapping glucose uptake, transport and metabolism in the bovine lensPossible reference: Zahraei, A. et al. (2020) Mapping glucose metabolites in the normal bovine lens: Evaluation and optimisation of a matrix-assisted laser desorption/ionisation imaging mass spectrometry method., J Mass Spectrom, PMID 33089566
PXD033012 Dataset with its publication pending (from PRIDE)Dataset title: Regionally defined proteomic profiles of human cerebral tissue and organoids reveal conserved molecular modules of neurodevelopmentPossible reference: Melliou, S. et al. (2022) Regionally defined proteomic profiles of human cerebral tissue and organoids reveal conserved molecular modules of neurodevelopment., Cell Rep, PMID 35613588
PXD033010 Dataset with its publication pending (from PRIDE)Dataset title: Lung macrophages utilize unique cathepsin K-dependent phagosomal machinery to degrade intracellular collagenPossible reference: Fabrik, I. et al. (2023) Lung macrophages utilize unique cathepsin K-dependent phagosomal machinery to degrade intracellular collagen., Life Sci Alliance, PMID 36697252
PXD033006 Dataset with its publication pending (from PRIDE)Dataset title: Placental macrophage (Hofbauer cell) response to viral and bacterial ligands is influenced by fetal sexPossible reference: Pantazi, P. et al. (2022) Placental macrophage responses to viral and bacterial ligands and the influence of fetal sex., iScience, PMID 36505933
PXD033000 Dataset with its publication pending (from PRIDE)Dataset title: Neuropeptidome of Zophobas atratusPossible reference: Marciniak, P. et al. (2022) Neuropeptidomes of Tenebrio molitor L. and Zophobas atratus Fab. (Coleoptera, Polyphaga: Tenebrionidae)., J Proteome Res, PMID 36107737
PXD032975 Dataset with its publication pending (from PRIDE)Dataset title: dCas9 targeted chromatin and histone enrichment for mass spectrometry (Catchet-MS) identifies IKZF1 as a novel target for HIV-1 latency reversalPossible reference: Ne, E. et al. (2022) Catchet-MS identifies IKZF1-targeting thalidomide analogues as novel HIV-1 latency reversal agents., Nucleic Acids Res, PMID 35640596
PXD032956 Dataset with its publication pending (from PRIDE)Dataset title: SUMOylation controls the rapid transcriptional reprogramming induced by chemotherapies in Acute Myeloid LeukemiasPossible reference: Boulanger, M. et al. (2023) DeSUMOylation of chromatin-bound proteins limits the rapid transcriptional reprogramming induced by daunorubicin in acute myeloid leukemias., Nucleic Acids Res, PMID 37462077
PXD032954 Dataset with its publication pending (from PRIDE)Dataset title: mCherry contains a fluorescent protein isoform that interferes with its reporter functionPossible reference: Fages-Lartaud, M. et al. (2022) mCherry contains a fluorescent protein isoform that interferes with its reporter function., Front Bioeng Biotechnol, PMID 36017355
PXD032947 Dataset with its publication pending (from PRIDE)Dataset title: Neuropeptidome of Tenebrio molitorPossible reference: Marciniak, P. et al. (2022) Neuropeptidomes of Tenebrio molitor L. and Zophobas atratus Fab. (Coleoptera, Polyphaga: Tenebrionidae)., J Proteome Res, PMID 36107737
PXD032924 Dataset with its publication pending (from PRIDE)Dataset title: Simple and Fast Maximally Deuterated Control (maxD) preparation for HDX MS ExperimentsPossible reference: Peterle, D. et al. (2022) Simple and Fast Maximally Deuterated Control (maxD) Preparation for Hydrogen-Deuterium Exchange Mass Spectrometry Experiments., Anal Chem, PMID 35796687
PXD032913 Dataset with its publication pending (from PRIDE)Dataset title: Phosphoproteomics reveals rewiring of the insulin signaling network and multi-nodal defects in insulin resistancePossible reference: Fazakerley, DJ. et al. (2023) Phosphoproteomics reveals rewiring of the insulin signaling network and multi-nodal defects in insulin resistance., Nat Commun, PMID 36808134
PXD032877 Josiah Hardesty, Le Day, Jeffrey Warner, Dennis Warner, Marina Gritsenko, Aliya Asghar, Andrew Stolz, Timothy Morgan, Craig McClain, Jon Jacobs, Irina Kirpich. Hepatic Protein and Phosphoprotein Signatures of Alcohol-Associated Cirrhosis and Hepatitis. Am (from MassIVE)Dataset title: Hepatic protein and phosphoprotein signatures of alcohol-associated cirrhosis and hepatitisPossible reference: Hardesty, J. et al. (2022) Hepatic Protein and Phosphoprotein Signatures of Alcohol-Associated Cirrhosis and Hepatitis., Am J Pathol, PMID 35490715
PXD032867 Dataset with its publication pending (from jPOST)Dataset title: Proteome-wide lysine acetylation profiling to investigate the involvement of histone deacetylase HDA5 in the salt stress response of Arabidopsis leavesPossible reference: Tilak, P. et al. (2023) Proteome-wide lysine acetylation profiling to investigate the involvement of histone deacetylase HDA5 in the salt stress response of Arabidopsis leaves., Plant J, PMID 36961081
PXD032847 Dataset with its publication pending (from PRIDE)Dataset title: Systematic identification of cell fate regulatory programs using a single-cell atlas of mouse developmentPossible reference: Fei, L. et al. (2022) Systematic identification of cell-fate regulatory programs using a single-cell atlas of mouse development., Nat Genet, PMID 35817981
PXD032843 Dataset with its publication pending (from PRIDE)Dataset title: Multi-omics analysis identifies drivers of protein phosphorylationPossible reference: McGrail, DJ. et al. (2018) Multi-omics analysis reveals neoantigen-independent immune cell infiltration in copy-number driven cancers., Nat Commun, PMID 29615613
PXD032840 no publication (from MassIVE)Dataset title: Interaction of Bartonella henselae with fibronectin represents the molecular basis for adhesion to host cellsPossible reference: Vaca, DJ. et al. (2022) Interaction of Bartonella henselae with Fibronectin Represents the Molecular Basis for Adhesion to Host Cells., Microbiol Spectr, PMID 35435766
PXD032836 Dataset with its publication pending (from PRIDE)Dataset title: Distinct proteostasis states drive pharmacologic chaperone susceptibility for Cystic Fibrosis Transmembrane Conductance Regulator misfolding mutantsPossible reference: McDonald, EF. et al. (2022) Distinct proteostasis states drive pharmacologic chaperone susceptibility for cystic fibrosis transmembrane conductance regulator misfolding mutants., Mol Biol Cell, PMID 35389766
PXD032824 Dataset with its publication pending (from PRIDE)Dataset title: Sphingomyelin phodiesterase acid-like 3A promotes hepatocellular carcinoma growth through the enhancer of rudimentary homologSphingomyelin phodiesterase acid-like 3A promotes hepatocellular carcinoma growth through the enhancer of rudimentary homologPossible reference: Zhang, Y. et al. (2022) Sphingomyelin Phodiesterase Acid-Like 3A Promotes Hepatocellular Carcinoma Growth Through the Enhancer of Rudimentary Homolog., Front Oncol, PMID 35686107
PXD032794 Dataset with its publication pending (from PRIDE)Dataset title: Antimicrobial potential of a ponericin-like peptide isolated from Bombyx mori L. hemolymph in response to Pseudomonas aeruginosa infectionPossible reference: Nesa, J. et al. (2022) Antimicrobial potential of a ponericin-like peptide isolated from Bombyx mori L. hemolymph in response to Pseudomonas aeruginosa infection., Sci Rep, PMID 36109567
PXD032792 Dataset with its publication pending (from PRIDE)Dataset title: Integrated Multi-Omics Reveal Polycomb Repressive Complex 2 Restricts Human Trophoblast InductionPossible reference: Zijlmans, DW. et al. (2022) Integrated multi-omics reveal polycomb repressive complex 2 restricts human trophoblast induction., Nat Cell Biol, PMID 35697783
PXD032787 Dataset with its publication pending (from PRIDE)Dataset title: Rhodnius prolixus hemolymph proteomePossible reference: Ouali, R. et al. (2022) Rhodnius prolixus Hemolymph Immuno-Physiology: Deciphering the Systemic Immune Response Triggered by Trypanosoma cruzi Establishment in the Vector Using Quantitative Proteomics., Cells, PMID 35563760
PXD032786 Dataset with its publication pending (from PRIDE)Dataset title: Sequence Coverage Visualizer: A web application for protein sequence coverage 3D visualizationPossible reference: Shao, X. et al. (2023) Sequence Coverage Visualizer: A Web Application for Protein Sequence Coverage 3D Visualization., J Proteome Res, PMID 36511722
PXD032762 Dataset with its publication pending (from PRIDE)Dataset title: Sideroflexin 4 is a Complex I assembly factor that interacts with the MCIA complex and is required for the assembly of the ND2 modulePossible reference: Jackson, TD. et al. (2022) Sideroflexin 4 is a complex I assembly factor that interacts with the MCIA complex and is required for the assembly of the ND2 module., Proc Natl Acad Sci U S A, PMID 35333655
PXD032703 Dataset with its publication pending (from jPOST)Dataset title: Characterization of oligopeptides in Solanum lycopersicum xylem exudatesPossible reference: Okamoto, S. et al. (2022) Characterization of Oligopeptides in Solanum lycopersicum Xylem Exudates., Life (Basel), PMID 35455083
PXD032693 no publication (from MassIVE)Dataset title: Targeting LIPA Independent of its Lipase Activity is a Therapeutic Strategy in Solid Tumors via Induction of Endoplasmic Reticulum StressPossible reference: Liu, X. et al. (2022) Targeting LIPA independent of its lipase activity is a therapeutic strategy in solid tumors via induction of endoplasmic reticulum stress., Nat Cancer, PMID 35654861
PXD032688 Dataset with its publication pending (from PRIDE)Dataset title: Mechano-redox control of Mac-1 de-adhesion from ICAM-1 by protein disulfide isomerase promotes directional movement under flowPossible reference: Dupuy, A. et al. (2023) Mechano-Redox Control of Mac-1 De-Adhesion by PDI Promotes Directional Movement Under Flow., Circ Res, PMID 37021588
PXD032389 Dataset with its publication pending (from PRIDE)Dataset title: Quantitative proteomics of tau and Aβ amyloid in detergent insoluble fractions from Alzheimer’s disease brainsPossible reference: Thygesen, C. et al. (2018) Age-Dependent Changes in the Sarkosyl-Insoluble Proteome of APPSWE/PS1ΔE9 Transgenic Mice Implicate Dysfunctional Mitochondria in the Pathogenesis of Alzheimer's Disease., J Alzheimers Dis, PMID 29991132
PXD032381 Dataset with its publication pending (from iProX)Dataset title: Metaproteomic Analysis of Fermented Food MicroorganismsPossible reference: Cárdenas, C. et al. (2014) Protein extraction method for the proteomic study of a Mexican traditional fermented starchy food., J Proteomics, PMID 25009144
PXD032379 Dataset with its publication pending (from jPOST)Dataset title: Analysis of Viral Spike Protein N-glycosylation using Ultraviolet Photodissociation Mass SpectrometryPossible reference: Escobar, EE. et al. (2022) Analysis of Viral Spike Protein N-Glycosylation Using Ultraviolet Photodissociation Mass Spectrometry., Anal Chem, PMID 35388686
PXD032378 Dataset with its publication pending (from PRIDE)Dataset title: A palmitoyl transferase chemical genetic system to map ZDHHC-specific S-acylationPossible reference: Ocasio, CA. et al. (2024) A palmitoyl transferase chemical-genetic system to map ZDHHC-specific S-acylation., Nat Biotechnol, PMID 38191663
PXD032374 Dataset with its publication pending (from PRIDE)Dataset title: Rapid and specific degradation of endogenous proteins in mouse models using auxin-inducible degronsPossible reference: Macdonald, L. et al. (2022) Rapid and specific degradation of endogenous proteins in mouse models using auxin-inducible degrons., Elife, PMID 35736539
PXD032373 Dataset with its publication pending (from PRIDE)Dataset title: A palmitoyl transferase chemical genetic system to map ZDHHC-specific S-acylationPossible reference: Ocasio, CA. et al. (2024) A palmitoyl transferase chemical-genetic system to map ZDHHC-specific S-acylation., Nat Biotechnol, PMID 38191663
PXD032372 Dataset with its publication pending (from PRIDE)Dataset title: Quantitative proteomics of tau and Aβ amyloid in detergent insoluble fractions from Alzheimer’s disease brainsPossible reference: Thygesen, C. et al. (2018) Age-Dependent Changes in the Sarkosyl-Insoluble Proteome of APPSWE/PS1ΔE9 Transgenic Mice Implicate Dysfunctional Mitochondria in the Pathogenesis of Alzheimer's Disease., J Alzheimers Dis, PMID 29991132
PXD032365 Dataset with its publication pending (from PRIDE)Dataset title: The diverse susceptibilities and responses of human and rodent cells to orthohantavirus infection reveal different levels of cellular restrictionPossible reference: Gallo, G. et al. (2022) Diverse susceptibilities and responses of human and rodent cells to orthohantavirus infection reveal different levels of cellular restriction., PLoS Negl Trop Dis, PMID 36223391
PXD032358 Dataset with its publication pending (from PRIDE)Dataset title: Genetic and chemical validation of Plasmodium falciparum aminopeptidase PfA-M17 as a drug target in the hemoglobin digestion pathwayPossible reference: Edgar, RCS. et al. (2022) Genetic and chemical validation of Plasmodium falciparum aminopeptidase PfA-M17 as a drug target in the hemoglobin digestion pathway., Elife, PMID 36097817
PXD032356 Dataset with its publication pending (from PRIDE)Dataset title: FLEXIBLE AND DIGESTIBLE WOOD CAUSED BY VIRAL-INDUCED ALTERATION OF CELL WALL COMPOSITIONPossible reference: Allen, H. et al. (2022) Flexible and digestible wood caused by viral-induced alteration of cell wall composition., Curr Biol, PMID 35732179
PXD032328 Dataset with its publication pending (from PRIDE)Dataset title: TMEM260 is a protein-specific O-mannosyltransferasePossible reference: Larsen, ISB. et al. (2023) The SHDRA syndrome-associated gene TMEM260 encodes a protein-specific O-mannosyltransferase., Proc Natl Acad Sci U S A, PMID 37186866
PXD032327 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic changes associated with maternal dietary low É6:É3 ratio in piglets supplemented with seaweed Part I: Serum proteomesPossible reference: Nguyen, TX. et al. (2023) Proteomic changes associated with maternal dietary low ω6:ω3 ratio in piglets supplemented with seaweed. Part I: Serum proteomes., J Proteomics, PMID 36191802
PXD032322 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic and functional analysis of the effects of quinoxaline derivatives on Entamoeba histolyticaPossible reference: Avila-Bonilla, RG. et al. (2022) Proteomic and Functional Analysis of the Effects of Quinoxaline Derivatives on Entamoeba histolytica., Front Cell Infect Microbiol, PMID 35832378
PXD032320 Dataset with its publication pending (from PRIDE)Dataset title: Cell autonomous immune dysfunction driven by disrupted autophagy in C9orf72-ALS microglia contributes to neurodegenerationPossible reference: Banerjee, P. et al. (2023) Cell-autonomous immune dysfunction driven by disrupted autophagy in C9orf72-ALS iPSC-derived microglia contributes to neurodegeneration., Sci Adv, PMID 37083530
PXD032318 Dataset with its publication pending (from PRIDE)Dataset title: Kaposi’s sarcoma-associated herpesvirus induces specialised ribosomes to efficiently translate viral lytic mRNAsPossible reference: Murphy, JC. et al. (2023) Kaposi's sarcoma-associated herpesvirus induces specialised ribosomes to efficiently translate viral lytic mRNAs., Nat Commun, PMID 36653366
PXD032312 Dataset with its publication pending (from PRIDE)Dataset title: Temporal Quantitative Proteomic Profiling of Murine Embryonic Heart DevelopmentPossible reference: Edwards, W. et al. (2023) Quantitative proteomic profiling identifies global protein network dynamics in murine embryonic heart development., Dev Cell, PMID 37148880
PXD032293 Dataset with its publication pending (from PRIDE)Dataset title: Mouse and human abdominal aneurysm proteomicsPossible reference: Galora, S. et al. (2015) Association of rs1466535 LRP1 but not rs3019885 SLC30A8 and rs6674171 TDRD10 gene polymorphisms with abdominal aortic aneurysm in Italian patients., J Vasc Surg, PMID 24423473
PXD032284 Dataset with its publication pending (from PRIDE)Dataset title: Kinobead profiling of PITCOINs1-3Possible reference: Médard, G. et al. (2015) Optimized chemical proteomics assay for kinase inhibitor profiling., J Proteome Res, PMID 25660469
PXD032270 Dataset with its publication pending (from PRIDE)Dataset title: The role of testosterone in spermatogenesis: lessons from proteome profiling of human spermatozoa in testosterone deficiencyPossible reference: Grande, G. et al. (2022) The Role of Testosterone in Spermatogenesis: Lessons From Proteome Profiling of Human Spermatozoa in Testosterone Deficiency., Front Endocrinol (Lausanne), PMID 35663320
PXD032249 no publication (from MassIVE)Dataset title: Octreotide-induced changes in the saliva proteomePossible reference: Cohen, J. et al. (2023) Octreotide may improve pharyngocutaneous fistula healing through downregulation of cystatins: A pilot study., Laryngoscope Investig Otolaryngol, PMID 36846407
PXD032239 Dataset with its publication pending (from PRIDE)Dataset title: A selective and orally bioavailable VHL-recruiting PROTAC achieves SMARCA2 degradation in vivoPossible reference: Kofink, C. et al. (2022) A selective and orally bioavailable VHL-recruiting PROTAC achieves SMARCA2 degradation in vivo., Nat Commun, PMID 36216795
PXD032236 Dataset with its publication pending (from PRIDE)Dataset title: Memory CD8+ T cells upregulate glycolysis and effector functions under limiting oxygen conditionsPossible reference: Beumer-Chuwonpad, A. et al. (2023) Memory CD8+ T cells upregulate glycolysis and effector functions under limiting oxygen conditions., Eur J Immunol, PMID 36482267
PXD032235 Dataset with its publication pending (from PRIDE)Dataset title: Pitfalls and Solutions in Mass Spectrometry-based Identification of Protein GlycationPossible reference: Ma, W. et al. (2023) Pitfalls and Solutions in Mass Spectrometry-Based Identification of Protein Glycation., Anal Chem, PMID 36630282
PXD032234 Dataset with its publication pending (from PRIDE)Dataset title: Cellular and culture medium proteomes from umbilical cord mesenchymal stem cell and human umbilical vein endothelial cellsPossible reference: Vieira de Castro, J. et al. (2017) Impact of mesenchymal stem cells' secretome on glioblastoma pathophysiology., J Transl Med, PMID 28969635
PXD032215 Dataset with its publication pending (from PRIDE)Dataset title: Quantitative proteomic analysis of whole protein in three melanoma samples of 92.1, 92.1-A and 92.1-BPossible reference: Fei, X. et al. (2022) Quantitative proteomic dataset of whole protein in three melanoma samples of 92.1, 92.1-A and 92.1-B., Data Brief, PMID 36164296
PXD032188 Dataset with its publication pending (from PRIDE)Dataset title: Signalling Inhibition by Ponatinib Disrupts Productive Alternative Lengthening of Telomeres (ALT)Possible reference: Kusuma, FK. et al. (2023) Signalling inhibition by ponatinib disrupts productive alternative lengthening of telomeres (ALT)., Nat Commun, PMID 37024489
PXD032185 Dataset with its publication pending (from PRIDE)Dataset title: The cohesin acetylation cycle controls chromatin loop length through a PDS5A brake mechanismPossible reference: van Ruiten, MS. et al. (2022) The cohesin acetylation cycle controls chromatin loop length through a PDS5A brake mechanism., Nat Struct Mol Biol, PMID 35710836
PXD032184 Dataset with its publication pending (from PRIDE)Dataset title: Pramel7-Cul2 axis establishes ground-state gene expression in embryonic stem cellsPossible reference: Yang, SH. et al. (2014) Otx2 and Oct4 drive early enhancer activation during embryonic stem cell transition from naive pluripotency., Cell Rep, PMID 24931607
PXD032166 Dataset with its publication pending (from PRIDE)Dataset title: Exposure of a bovine rumen microbiome model to glyphosatePossible reference: Riede, S. et al. (2016) Investigations on the possible impact of a glyphosate-containing herbicide on ruminal metabolism and bacteria in vitro by means of the 'Rumen Simulation Technique'., J Appl Microbiol, PMID 27230806
PXD032161 Dataset with its publication pending (from PRIDE)Dataset title: Cell type-specific biotin labeling in vivo resolves regional neuronal and astrocyte proteomic differences in mouse brainPossible reference: Rayaprolu, S. et al. (2022) Cell type-specific biotin labeling in vivo resolves regional neuronal and astrocyte proteomic differences in mouse brain., Nat Commun, PMID 35614064
PXD032153 Dataset with its publication pending (from PRIDE)Dataset title: Apoptotic brown adipocytes enhance energy expenditure via SLC29A1-regulated extracellular inosinePossible reference: Niemann, B. et al. (2022) Apoptotic brown adipocytes enhance energy expenditure via extracellular inosine., Nature, PMID 35790189
PXD032142 Dataset with its publication pending (from jPOST)Dataset title: Label free quantification of LC-MS analysis of Dental pulp cellsPossible reference: Zainol Abidin, IZ. et al. (2023) Label-free Quantitative Proteomic Analysis of Ascorbic Acid-induced Differentially Expressed Osteoblast-related Proteins in Dental Pulp Stem Cells from Deciduous and Permanent Teeth., Curr Stem Cell Res Ther, PMID 35762553
PXD032141 Dataset with its publication pending (from PRIDE)Dataset title: Influence of sex, age and diabetes on brain transcriptome and proteome modifications following cerebral ischemiaPossible reference: Ramiro, L. et al. (2023) Influence of sex, age and diabetes on brain transcriptome and proteome modifications following cerebral ischemia., BMC Neurosci, PMID 36707762
PXD032132 Dataset with its publication pending (from PRIDE)Dataset title: Cross-link assisted spatial proteomics to map sub-organelle proteomes and membrane protein topologyPossible reference: Zhu, Y. et al. (2024) Cross-link assisted spatial proteomics to map sub-organelle proteomes and membrane protein topologies., Nat Commun, PMID 38632225
PXD032129 Dataset with its publication pending (from iProX)Dataset title: Circadian rhythm disturbance mediates adipose tissue protein analysis in micePossible reference: Barclay, JL. et al. (2013) High-fat diet-induced hyperinsulinemia and tissue-specific insulin resistance in Cry-deficient mice., Am J Physiol Endocrinol Metab, PMID 23531614
PXD032093 Dataset with its publication pending (from iProX)Dataset title: ILF3 safeguards telomere from aberrant homologous recombination as a telomeric R-loop readerPossible reference: Wang, C. et al. (2024) ILF3 safeguards telomeres from aberrant homologous recombination as a telomeric R-loop reader., Protein Cell, PMID 37991243
PXD032082 Dataset with its publication pending (from PRIDE)Dataset title: Metabolomic and Proteomic and Revealed Differences in the Distribution and Synthesis Mechanism of Aroma Precursors in Tobacco Leaf, Stem, and Root at Seedling StagePossible reference: Liu, A. et al. (2022) Proteomic and Metabolomic Revealed Differences in the Distribution and Synthesis Mechanism of Aroma Precursors in Yunyan 87 Tobacco Leaf, Stem, and Root at the Seedling Stage., ACS Omega, PMID 36157728
PXD032081 Dataset with its publication pending (from PRIDE)Dataset title: Peptide of Trichinella spiralis infective larval extract that harnesses growth of human hepatoma cellsPossible reference: Ruenchit, P. et al. (2022) Peptide of Trichinella spiralis Infective Larval Extract That Harnesses Growth of Human Hepatoma Cells., Front Cell Infect Microbiol, PMID 35558100
PXD032072 Dataset with its publication pending (from PRIDE)Dataset title: The PripA-TbcrA complex-centered Rab GAP cascade facilitates macropinosome maturation in DictyosteliumPossible reference: Tu, H. et al. (2022) The PripA-TbcrA complex-centered Rab GAP cascade facilitates macropinosome maturation in Dictyostelium., Nat Commun, PMID 35379834
PXD032052 Dataset with its publication pending (from PRIDE)Dataset title: Identification of substrates of palmitoyl protein thioesterase 1 highlights roles of depalmitoylation in disulfide bond formation and synaptic functionPossible reference: Gorenberg, EL. et al. (2022) Identification of substrates of palmitoyl protein thioesterase 1 highlights roles of depalmitoylation in disulfide bond formation and synaptic function., PLoS Biol, PMID 35358180
PXD032030 Dataset with its publication pending (from PRIDE)Dataset title: Allosteric HSP70 inhibitors in Proteasome Inhibitor Resistant Multiple MyelomaPossible reference: Ferguson, ID. et al. (2022) Allosteric HSP70 inhibitors perturb mitochondrial proteostasis and overcome proteasome inhibitor resistance in multiple myeloma., Cell Chem Biol, PMID 35853457
PXD032028 Dataset with its publication pending (from PRIDE)Dataset title: Requirement of hepatic pyruvate carboxylase during fasting, high fat and ketogenic dietPossible reference: Selen, ES. et al. (2022) Requirement of hepatic pyruvate carboxylase during fasting, high fat, and ketogenic diet., J Biol Chem, PMID 36441025
PXD032000 no publication (from MassIVE)Dataset title: A mass spectrometry-based atlas of extracellular matrix proteins across 25 mouse organsPossible reference: McCabe, MC. et al. (2023) Mass Spectrometry-Based Atlas of Extracellular Matrix Proteins across 25 Mouse Organs., J Proteome Res, PMID 36763087
PXD031989 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic comparison of Biomphalaria glabrata excretory-secretory proteins at different time-points of Schistosoma mansoni infectionPossible reference: Fogarty, CE. et al. (2022) Identification of Schistosoma mansoni miracidia attractant candidates in infected Biomphalaria glabrata using behaviour-guided comparative proteomics., Front Immunol, PMID 36300127
PXD031979 Dataset with its publication pending (from iProX)Dataset title: Multi-platform omics analysis reveals molecular signatures for pathogenesis and activity of systemic lupus erythematosusPossible reference: Huang, X. et al. (2022) Multi-Platform Omics Analysis Reveals Molecular Signatures for Pathogenesis and Activity of Systemic Lupus Erythematosus., Front Immunol, PMID 35514958
PXD031974 Dataset with its publication pending (from PRIDE)Dataset title: Shotgun analysis of serum proteome on Schistosoma mansoni infectionPossible reference: Gonçalves-Silva, G. et al. (2022) Profiling the serum proteome during Schistosoma mansoni infection in the BALB/c mice: A focus on the altered lipid metabolism as a key modulator of host-parasite interactions., Front Immunol, PMID 36119112
PXD031972 Dataset with its publication pending (from PRIDE)Dataset title: Protection of nascent DNA at stalled replication forks is mediated by phosphorylation of RIF1 intrinsically disordered regionPossible reference: Balasubramanian, S. et al. (2022) Protection of nascent DNA at stalled replication forks is mediated by phosphorylation of RIF1 intrinsically disordered region., Elife, PMID 35416772
PXD031964 Dataset with its publication pending (from PRIDE)Dataset title: UBQLN2 restrains the domesticated retrotransposon PEG10 to maintain neuronal health in ALSPossible reference: Black, HH. et al. (2023) UBQLN2 restrains the domesticated retrotransposon PEG10 to maintain neuronal health in ALS., Elife, PMID 36951542
PXD031959 Dataset with its publication pending (from jPOST)Dataset title: Quantitative proteomics reveals metabolic reprogramming in host cells induced by trophozoites and intermediate subunit of Gal/GalNAc lectins from Entamoeba histolyticaPossible reference: Zhao, Y. et al. (2022) Quantitative Proteomics Reveals Metabolic Reprogramming in Host Cells Induced by Trophozoites and Intermediate Subunit of Gal/GalNAc Lectins from Entamoeba histolytica., mSystems, PMID 35343800
PXD031955 Dataset with its publication pending (from PRIDE)Dataset title: Capillary Electrophoresis Mass Spectrometry for Scalable Single-Cell ProteomicsPossible reference: Lombard-Banek, C. et al. (2019) Microsampling Capillary Electrophoresis Mass Spectrometry Enables Single-Cell Proteomics in Complex Tissues: Developing Cell Clones in Live Xenopus laevis and Zebrafish Embryos., Anal Chem, PMID 30827088
PXD031949 no publication (from MassIVE)Dataset title: Oncogenic deubiquitination controls tyrosine kinase signaling and therapy response in acute lymphoblastic leukemiaPossible reference: Jin, Q. et al. (2022) Oncogenic deubiquitination controls tyrosine kinase signaling and therapy response in acute lymphoblastic leukemia., Sci Adv, PMID 36490346
PXD031929 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic Alterations Associated with Residual Disease in Neoadjuvant Chemotherapy Treated Ovarian Cancer TissuesPossible reference: Penick, ER. et al. (2022) Proteomic alterations associated with residual disease in neoadjuvant chemotherapy treated ovarian cancer tissues., Clin Proteomics, PMID 36195845
PXD031916 Dataset with its publication pending (from PRIDE)Dataset title: Early response evaluation by single cell signaling profiling in acute myeloid leukemiaPossible reference: Shay, JW. et al. (2016) Abstracts from the 3rd International Genomic Medicine Conference (3rd IGMC 2015) : Jeddah, Kingdom of Saudi Arabia. 30 November - 3 December 2015., BMC Genomics, PMID 27454254
PXD031903 Dataset with its publication pending (from iProX)Dataset title: A terminal alkyne and disulfide functionalized agarose resin specifically enriches azidohomoalanine labeled nascent proteinsPossible reference: Hou, Z. et al. (2021) A terminal alkyne and disulfide functionalized agarose resin specifically enriches azidohomoalanine labeled nascent proteins., J Chromatogr B Analyt Technol Biomed Life Sci, PMID 33486215
PXD031899 no publication (from MassIVE)Dataset title: Reversible lysine-targeted probes reveal residence time-based kinase selectivity Possible reference: Yang, T. et al. (2022) Reversible lysine-targeted probes reveal residence time-based kinase selectivity., Nat Chem Biol, PMID 35590003
PXD031898 no publication (from MassIVE)Dataset title: Ammonium Sulfate-based Prefractionation Improved Proteome Coverage in Arabidopsis thaliana Leaf ExtractPossible reference: Tola, AJ. et al. (2023) Ammonium sulfate-based prefractionation improved proteome coverage and detection of carbonylated proteins in Arabidopsis thaliana leaf extract., Planta, PMID 36808312
PXD031892 (from jPOST)Dataset title: Sera Protein Signatures of Endometrial Cancer Lymph Node MetastasesPossible reference: Benbrook, DM. et al. (2022) Sera Protein Signatures of Endometrial Cancer Lymph Node Metastases., Int J Mol Sci, PMID 35328698
PXD031878 Dataset with its publication pending (from PRIDE)Dataset title: Oxygen and hormone effect on rat oligodrendrocyte progenitor cell line (OLN93)Possible reference: Sunny, DE. et al. (2022) Fetal Zone Steroids Show Discrete Effects on Hyperoxia-Induced Attenuation of Migration in Cultured Oligodendrocyte Progenitor Cells., Oxid Med Cell Longev, PMID 35585881
PXD031875 Dataset with its publication pending (from PRIDE)Dataset title: Biomarkers for canine Leptospira vaccine potencyPossible reference: Novak, A. et al. (2022) Transcriptome and proteome analysis of innate immune responses to inactivated Leptospira and bivalent Leptospira vaccines in canine 030-D cells., Sci Rep, PMID 35927283
PXD031871 Dataset with its publication pending (from PRIDE)Dataset title: Physiological and proteomic analyses indicate delayed sowing improves photosynthetic capacity in wheat flag leaves under heat stressPossible reference: Fei, L. et al. (2022) Physiological and Proteomic Analyses Indicate Delayed Sowing Improves Photosynthetic Capacity in Wheat Flag Leaves Under Heat Stress., Front Plant Sci, PMID 35401629
PXD031867 Dataset with its publication pending (from PRIDE)Dataset title: In Streptococcus thermophilus, ammonia from urea hydrolysis paradoxically boosts acidification and reveals a new regulatory mechanism of glycolysisPossible reference: Arioli, S. et al. (2022) In Streptococcus thermophilus, Ammonia from Urea Hydrolysis Paradoxically Boosts Acidification and Reveals a New Regulatory Mechanism of Glycolysis., Microbiol Spectr, PMID 35467410
PXD031866 Dataset with its publication pending (from PRIDE)Dataset title: Stomatin modulates adipogenesis through ERK pathway and regulates fatty acid uptake and lipid droplet growthPossible reference: Wu, SC. et al. (2022) Stomatin modulates adipogenesis through the ERK pathway and regulates fatty acid uptake and lipid droplet growth., Nat Commun, PMID 35854007
PXD031862 Dataset with its publication pending (from PRIDE)Dataset title: Extracellular vesicles derived from the choroid plexus trigger neural stem cells differentiationPossible reference: Ditte, Z. et al. (2022) Extracellular vesicles derived from the choroid plexus trigger the differentiation of neural stem cells., J Extracell Vesicles, PMID 36325603
PXD031853 Dataset with its publication pending (from iProX)Dataset title: CTNNBL1 restricts HIV-1 replicationPossible reference: Liang, G. et al. (2022) CTNNBL1 restricts HIV-1 replication by suppressing viral DNA integration into the cell genome., Cell Rep, PMID 35294870
PXD031850 Dataset with its publication pending (from PanoramaPublic)Dataset title: IFI16-mediated suppression of HSV-1 protein expressionPossible reference: Liu, D. et al. (2023) IFI16 phase separation via multi-phosphorylation drives innate immune signaling., Nucleic Acids Res, PMID 37283074
PXD031833 Dataset with its publication pending (from PRIDE)Dataset title: TTYH family members form tetrameric complexes at the cell membranePossible reference: Melvin, E. et al. (2022) TTYH family members form tetrameric complexes at the cell membrane., Commun Biol, PMID 36042377
PXD031832 no publication (from MassIVE)Dataset title: TurnoveR: A Skyline External Tool for Analysis of Protein Turnover in Metabolic Labeling Studies Possible reference: Basisty, N. et al. (2023) TurnoveR: A Skyline External Tool for Analysis of Protein Turnover in Metabolic Labeling Studies., J Proteome Res, PMID 36165806
PXD031809 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic analysis reveals enzymes for β-D-glucan formation and degradation in Levilactobacillus brevis TMW 1.2112Possible reference: Bockwoldt, JA. et al. (2022) Proteomic Analysis Reveals Enzymes for β-D-Glucan Formation and Degradation in Levilactobacillus brevis TMW 1.2112., Int J Mol Sci, PMID 35328813
PXD031791 Dataset with its publication pending (from PRIDE)Dataset title: The cell-based control and underlying mechanism for inflammatory bone lossPossible reference: Kontaki, E. et al. (2017) Aberrant function of myeloid-derived suppressor cells (MDSCs) in experimental colitis and in inflammatory bowel disease (IBD) immune responses., Autoimmunity, PMID 28276713
PXD031790 Dataset with its publication pending (from PRIDE)Dataset title: Double-stranded RNA viruses are released from Trichomonas vaginalis inside exosomes and modulate the exosomal cargo.Possible reference: Rada, P. et al. (2022) Double-Stranded RNA Viruses Are Released From Trichomonas vaginalis Inside Small Extracellular Vesicles and Modulate the Exosomal Cargo., Front Microbiol, PMID 35602021
PXD031788 Dataset with its publication pending (from PRIDE)Dataset title: A time-resolved multi-omics atlas of Acanthamoeba castellanii encystmentPossible reference: Bernard, C. et al. (2022) A time-resolved multi-omics atlas of Acanthamoeba castellanii encystment., Nat Commun, PMID 35835784
PXD031779 Dataset with its publication pending (from PRIDE)Dataset title: Meiotic DNA breaks activate a streamlined response that largely avoids protein level changes-DDAPossible reference: Kar, FM. et al. (2022) Meiotic DNA breaks activate a streamlined phospho-signaling response that largely avoids protein-level changes., Life Sci Alliance, PMID 36271494
PXD031776 Dataset with its publication pending (from PRIDE)Dataset title: In vitro erythropoiesis at different pO2 induces adaptations that are independent of prior systemic exposure to hypoxiaPossible reference: Simionato, G. et al. (2022) In Vitro Erythropoiesis at Different pO2 Induces Adaptations That Are Independent of Prior Systemic Exposure to Hypoxia., Cells, PMID 35406648
PXD031774 Dataset with its publication pending (from PRIDE)Dataset title: A proteomic landscape of Candida albicans in the stepwise evolution to fluconazole resistancePossible reference: Song, N. et al. (2022) A Proteomic Landscape of Candida albicans in the Stepwise Evolution to Fluconazole Resistance., Antimicrob Agents Chemother, PMID 35343782
PXD031770 Dataset with its publication pending (from PRIDE)Dataset title: ISG15 Conjugation to Proteins on Nascent DNA Mitigates DNA Replication StressPossible reference: Wardlaw, CP. et al. (2022) ISG15 conjugation to proteins on nascent DNA mitigates DNA replication stress., Nat Commun, PMID 36216822
PXD031765 Dataset with its publication pending (from PRIDE)Dataset title: Advanced in vitro safety assessment of herbal medicines for the treatment of non-psychotic mental disorders in pregnancyPossible reference: Spiess, D. et al. (2022) Advanced in Vitro Safety Assessment of Herbal Medicines for the Treatment of Non-Psychotic Mental Disorders in Pregnancy., Front Pharmacol, PMID 35814220
PXD031748 no publication (from MassIVE)Dataset title: Functional interactomes of the Ebola virus polymerase identified by proximity proteomics in the context of viral replication Possible reference: Fang, J. et al. (2022) Functional interactomes of the Ebola virus polymerase identified by proximity proteomics in the context of viral replication., Cell Rep, PMID 35320713
PXD031739 Dataset with its publication pending (from PRIDE)Dataset title: Effects on the lipid metabolism of Atlantic cod (Gadus morhua) after in vivo exposure with Ppar agonistsPossible reference: Eide, M. et al. (2023) Integrative omics-analysis of lipid metabolism regulation by peroxisome proliferator-activated receptor a and b agonists in male Atlantic cod., Front Physiol, PMID 37035678
PXD031713 Dataset with its publication pending (from PRIDE)Dataset title: Cryo-EM structures of Gid12-bound GID E3 reveal steric blockade as a mechanism inhibiting substrate ubiquitylationPossible reference: Qiao, S. et al. (2022) Cryo-EM structures of Gid12-bound GID E3 reveal steric blockade as a mechanism inhibiting substrate ubiquitylation., Nat Commun, PMID 35650207
PXD031708 Dataset with its publication pending (from PRIDE)Dataset title: Competitive Profiling of Ligandable Cysteines in Staphylococcus aureus with an Organogold CompoundPossible reference: Schmidt, C. et al. (2022) Competitive profiling of ligandable cysteines in Staphylococcus aureus with an organogold compound., Chem Commun (Camb), PMID 35420608
PXD031706 Dataset with its publication pending (from PRIDE)Dataset title: Antibacterial Activities and Action Mode of Anti-hyperlipidemic Lomitapide Against Staphylococcus aureus_1Possible reference: Zhang, Y. et al. (2022) Antibacterial activities and action mode of anti-hyperlipidemic lomitapide against Staphylococcus aureus., BMC Microbiol, PMID 35473561
PXD031701 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic analysis on different tissues of Pteria penguinPossible reference: Li, H. et al. (2017) Characterization of transcriptome and identification of biomineralization genes in winged pearl oyster (Pteria penguin) mantle tissue., Comp Biochem Physiol Part D Genomics Proteomics, PMID 28103531
PXD031689 Dataset with its publication pending (from jPOST)Dataset title: ctenophore comb plate whole proteinsPossible reference: Sachkova, MY. et al. (2021) Neuropeptide repertoire and 3D anatomy of the ctenophore nervous system., Curr Biol, PMID 34587474
PXD031677 Dataset with its publication pending (from PRIDE)Dataset title: 40S hnRNP particles are a novel class of nuclear biomolecular condensatesPossible reference: Domanski, M. et al. (2022) 40S hnRNP particles are a novel class of nuclear biomolecular condensates., Nucleic Acids Res, PMID 35687109
PXD031667 no publication (from MassIVE)Dataset title: Redox-dependent Structure and Dynamics of Macrophage Migration Inhibitory Factor Reveal Sites of Latent AllosteryPossible reference: Skeens, E. et al. (2022) Redox-dependent structure and dynamics of macrophage migration inhibitory factor reveal sites of latent allostery., Structure, PMID 35381187
PXD031647 Dataset with its publication pending (from PRIDE)Dataset title: SP3-enabled rapid and high coverage chemoproteomic identification of redox-sensitive cysteinesPossible reference: Desai, HS. et al. (2022) SP3-Enabled Rapid and High Coverage Chemoproteomic Identification of Cell-State-Dependent Redox-Sensitive Cysteines., Mol Cell Proteomics, PMID 35219905
PXD031634 Dataset with its publication pending (from PRIDE)Dataset title: Multifactorial remodeling of the cancer immunopeptidome by interferon gammaPossible reference: Newey, A. et al. (2023) Multifactorial Remodeling of the Cancer Immunopeptidome by IFNγ., Cancer Res Commun, PMID 37991387
PXD031627 Dataset with its publication pending (from PRIDE)Dataset title: Proteome-wide structural changes measured with limited proteolysis-mass spectrometry: an advanced protocol for high-throughput applications.Possible reference: Malinovska, L. et al. (2023) Proteome-wide structural changes measured with limited proteolysis-mass spectrometry: an advanced protocol for high-throughput applications., Nat Protoc, PMID 36526727
PXD031625 Dataset with its publication pending (from PRIDE)Dataset title: Localization of the priming factors CAPS1 and CAPS2 in mouse sensory neurons is determined by their N-terminiPossible reference: Staudt, A. et al. (2022) Localization of the Priming Factors CAPS1 and CAPS2 in Mouse Sensory Neurons Is Determined by Their N-Termini., Front Mol Neurosci, PMID 35493323
PXD031615 Dataset with its publication pending (from PRIDE)Dataset title: S-Nitrosylation of the Virulence Regulator AphB Promotes Vibrio cholerae PathogenesisPossible reference: Chen, J. et al. (2022) S-Nitrosylation of the virulence regulator AphB promotes Vibrio cholerae pathogenesis., PLoS Pathog, PMID 35714156
PXD031611 Dataset with its publication pending (from PRIDE)Dataset title: Depletion of EXOSC2 protects against clinical COVID-19 and impedes SARS-CoV-2 replicationPossible reference: Moll, T. et al. (2022) Low expression of EXOSC2 protects against clinical COVID-19 and impedes SARS-CoV-2 replication., bioRxiv, PMID 35291294
PXD031593 Dataset with its publication pending (from PRIDE)Dataset title: EGF promotes PKM2 O-GlcNAcylation by stimulating O-GlcNAc transferase phosphorylation at Y976 and their subsequent associationPossible reference: Wang, Y. et al. (2022) EGF promotes PKM2 O-GlcNAcylation by stimulating O-GlcNAc transferase phosphorylation at Y976 and their subsequent association., J Biol Chem, PMID 35931120
PXD031586 Dataset with its publication pending (from PRIDE)Dataset title: Differential trafficking and expression of PIR proteins in acute and chronic Plasmodium infectionsPossible reference: Giorgalli, M. et al. (2022) Differential Trafficking and Expression of PIR Proteins in Acute and Chronic Plasmodium Infections., Front Cell Infect Microbiol, PMID 35782145
PXD031582 Dataset with its publication pending (from PRIDE)Dataset title: LOSS OF THE BATTEN DISEASE PROTEIN CLN3 LEADS TO MIS-TRAFFICKING OF M6PR AND DEFECTIVE AUTOPHAGIC-LYSOSOMAL REFORMATIONPossible reference: Calcagni', A. et al. (2023) Loss of the batten disease protein CLN3 leads to mis-trafficking of M6PR and defective autophagic-lysosomal reformation., Nat Commun, PMID 37400440
PXD031577 Dataset with its publication pending (from PRIDE)Dataset title: Grad-seq Enterococcus faecalis and faeciumPossible reference: Michaux, C. et al. (2023) Grad-seq analysis of Enterococcus faecalis and Enterococcus faecium provides a global view of RNA and protein complexes in these two opportunistic pathogens., Microlife, PMID 37223738
PXD031575 Dataset with its publication pending (from PRIDE)Dataset title: iTRAq and TMTPro datasets Rescored with PrositPossible reference: Gabriel, W. et al. (2022) Predicting fragment intensities and retention time of iTRAQ- and TMTPro-labeled peptides with Prosit-TMT., Proteomics, PMID 35578405
PXD031568 no publication (from MassIVE)Dataset title: Cysteine residues are responsible for the sulfurous off-flavor formed in heated whey protein solutions Possible reference: Li, C. et al. (2022) Cysteine residues are responsible for the sulfurous off-flavor formed in heated whey protein solutions., Food Chem (Oxf), PMID 35865714
PXD031566 no publication (from MassIVE)Dataset title: Functional protein composition in femoral glands of sand lizards (Lacerta agilis)Possible reference: Ibáñez, A. et al. (2022) Functional Protein Composition in Femoral Glands of Sand Lizards (Lacerta agilis)., Molecules, PMID 35408771
PXD031537 Dataset with its publication pending (from jPOST)Dataset title: Proteomic analysis of hexadecane utilization by Tsukamurella tyrosinosolvens PS2Possible reference: Romanova, V. et al. (2022) Significance of both alkB and P450 alkane-degrading systems in Tsukamurella tyrosinosolvens: proteomic evidence., Appl Microbiol Biotechnol, PMID 35396956
PXD031533 Dataset with its publication pending (from PRIDE)Dataset title: Comparative proteomics of CTS effect on human lung cancer H1975Possible reference: Cai, P. et al. (2022) Comparative Proteomics Analysis Reveals the Reversal Effect of Cryptotanshinone on Gefitinib-Resistant Cells in Epidermal Growth Factor Receptor-Mutant Lung Cancer., Front Pharmacol, PMID 35370706
PXD031529 Dataset with its publication pending (from PRIDE)Dataset title: Large-scale protein and phosphoprotein profiling to explore potato resistance mechanisms to Spongospora subterranea infectionPossible reference: Balotf, S. et al. (2022) Large-Scale Protein and Phosphoprotein Profiling to Explore Potato Resistance Mechanisms to Spongospora subterranea Infection., Front Plant Sci, PMID 35498715
PXD031522 Dataset with its publication pending (from PRIDE)Dataset title: Widespread consumption of the common food additive xanthan gum by the human gut microbiotaPossible reference: Ostrowski, MP. et al. (2022) Mechanistic insights into consumption of the food additive xanthan gum by the human gut microbiota., Nat Microbiol, PMID 35365790
PXD031510 Dataset with its publication pending (from PRIDE)Dataset title: SimPLIT: Simplified sample preparation for large-scale isobaric tagging proteomicsPossible reference: Sialana, FJ. et al. (2022) SimPLIT: Simplified Sample Preparation for Large-Scale Isobaric Tagging Proteomics., J Proteome Res, PMID 35848491
PXD031500 no publication (from PanoramaPublic)Dataset title: An interactive mass spectrometry atlas of histone posttranslational modifications in T-cell acute leukemiaPossible reference: Provez, L. et al. (2022) An interactive mass spectrometry atlas of histone posttranslational modifications in T-cell acute leukemia., Sci Data, PMID 36243775
PXD031490 Dataset with its publication pending (from PRIDE)Dataset title: Cyclodepsipeptides, solonamides, influence motility in the native producer Photobacterium galatheae S2753Possible reference: Zhang, SD. et al. (2022) Solonamides, a Group of Cyclodepsipeptides, Influence Motility in the Native Producer Photobacterium galatheae S2753., Appl Environ Microbiol, PMID 36000852
PXD031477 no publication (from MassIVE)Dataset title: Proteomics analysis of FFPE AIS thrombiPossible reference: Rossi, R. et al. (2022) Potential Biomarkers of Acute Ischemic Stroke Etiology Revealed by Mass Spectrometry-Based Proteomic Characterization of Formalin-Fixed Paraffin-Embedded Blood Clots., Front Neurol, PMID 35518205
PXD031461 Dataset with its publication pending (from PRIDE)Dataset title: Quantitative proteomics of airway epithelial cells from COPD and control pre- and post-influenza virus infectionPossible reference: Nakayama, M. et al. (2022) Quantitative proteomics of differentiated primary bronchial epithelial cells from chronic obstructive pulmonary disease and control identifies potential novel host factors post-influenza A virus infection., Front Microbiol, PMID 36713229
PXD031456 Dataset with its publication pending (from PRIDE)Dataset title: Translational reprogramming in response to accumulating stressors ensures critical threshold levels of Hsp90 for mammalian lifePossible reference: Bhattacharya, K. et al. (2022) Translational reprogramming in response to accumulating stressors ensures critical threshold levels of Hsp90 for mammalian life., Nat Commun, PMID 36270993
PXD031443 Dataset with its publication pending (from PRIDE)Dataset title: Multiple cis acting polypyrimidine tract elements regulate a cooperative mechanism for Triticum mosaic virus internal ribosomal entry site activity=]Possible reference: Jaramillo-Mesa, H. et al. (2022) Multiple Cis-acting Polypyrimidine Tract Elements Regulate a Cooperative Mechanism for Triticum Mosaic Virus Internal Ribosomal Entry Site Activity., Front Plant Sci, PMID 35498652
PXD031434 no publication (from MassIVE)Dataset title: Quality assurance of hematopoietic stem cells by macrophages determines stem cell clonalityPossible reference: Wattrus, SJ. et al. (2022) Quality assurance of hematopoietic stem cells by macrophages determines stem cell clonality., Science, PMID 36137040
PXD031431 no publication (from MassIVE)Dataset title: Lysine acetylation of E. coli aconitase isozymesPossible reference: Araujo, J. et al. (2022) Studying Acetylation of Aconitase Isozymes by Genetic Code Expansion., Front Chem, PMID 35402385
PXD031412 Dataset with its publication pending (from PRIDE)Dataset title: Proteome dynamics during transition from exponential to stationary phase in yeastPossible reference: Ridder, MD. et al. (2023) Proteome Dynamics During Transition From Exponential to Stationary Phase Under Aerobic and Anaerobic Conditions in Yeast., Mol Cell Proteomics, PMID 37076048
PXD031408 Dataset with its publication pending (from PRIDE)Dataset title: Extracellular endosulfatase Sulf-2 harbors a chondroitin/dermatan sulfate chain that modulates its enzyme activityPossible reference: El Masri, R. et al. (2022) Extracellular endosulfatase Sulf-2 harbors a chondroitin/dermatan sulfate chain that modulates its enzyme activity., Cell Rep, PMID 35294879
PXD031400 no publication (from MassIVE)Dataset title: Carry-over effects of dry period heat stress on mammary gland proteome and phosphoproteome in the subsequent lactation of dairy cowsPossible reference: Skibiel, AL. et al. (2022) Carry-over effects of dry period heat stress on the mammary gland proteome and phosphoproteome in the subsequent lactation of dairy cows., Sci Rep, PMID 35459770
PXD031388 Dataset with its publication pending (from PRIDE)Dataset title: Ubiquitin-based pathway acts inside chloroplasts to regulate photosynthesisPossible reference: Sun, Y. et al. (2022) Ubiquitin-based pathway acts inside chloroplasts to regulate photosynthesis., Sci Adv, PMID 36383657
PXD031379 Dataset with its publication pending (from PRIDE)Dataset title: Targeted proteoform mapping uncovers specific Neurexin-3 variants required for dendritic inhibitionPossible reference: Hauser, D. et al. (2022) Targeted proteoform mapping uncovers specific Neurexin-3 variants required for dendritic inhibition., Neuron, PMID 35550065
PXD031369 no publication (from MassIVE)Dataset title: High-light-inducible proteins HliA and HliB: pigment binding and protein-protein interactionsPossible reference: Konert, MM. et al. (2022) High-light-inducible proteins HliA and HliB: pigment binding and protein-protein interactions., Photosynth Res, PMID 35218444
PXD031356 no publication (from MassIVE)Dataset title: The Proteomic Characteristics of Rainbow Trout Blood with Severe, Moderate and Asymptomatic course of Vibrio anguillarum infectionPossible reference: Kurpe, SR. et al. (2022) Physiological and Biochemical Characteristics of Rainbow Trout with Severe, Moderate and Asymptomatic Course of Vibrio anguillarum Infection., Animals (Basel), PMID 36230384
PXD031355 Dataset with its publication pending (from PRIDE)Dataset title: A Bacterial Mannose Binding Lectin as a Tool for the Enrichment of C-and O- Mannosylated PeptidesPossible reference: Hütte, HJ. et al. (2022) A Bacterial Mannose Binding Lectin as a Tool for the Enrichment of C- and O-Mannosylated Peptides., Anal Chem, PMID 35549177
PXD031351 Dataset with its publication pending (from PRIDE)Dataset title: Control of variant surface glycoprotein expression by CFB2 in African trypanosomes and quantitative proteomic connections to translation and cytokinesis initiationPossible reference: Bravo Ruiz, G. et al. (2022) Control of Variant Surface Glycoprotein Expression by CFB2 in Trypanosoma brucei and Quantitative Proteomic Connections to Translation and Cytokinesis., mSphere, PMID 35306877
PXD031343 Dataset with its publication pending (from PRIDE)Dataset title: Impact of modified atmospheres on growth and metabolism of meat-spoilage relevant Photobacterium spp. as predicted by comparative proteomicsPossible reference: Fuertes-Perez, S. et al. (2022) Impact of Modified Atmospheres on Growth and Metabolism of Meat-Spoilage Relevant Photobacterium spp. as Predicted by Comparative Proteomics., Front Microbiol, PMID 35722325
PXD031337 Dataset with its publication pending (from PRIDE)Dataset title: Formation of toxic oligomers of polyQ-expanded Huntingtin by prion-mediated cross-seedingPossible reference: Gropp, MHM. et al. (2022) Formation of toxic oligomers of polyQ-expanded Huntingtin by prion-mediated cross-seeding., Mol Cell, PMID 36272412
PXD031335 Dataset with its publication pending (from PRIDE)Dataset title: Paramecium Polycomb Repressive Complex 2 physically interacts with the small RNA binding PIWI protein to repress transposable elementsPossible reference: Miró-Pina, C. et al. (2022) Paramecium Polycomb repressive complex 2 physically interacts with the small RNA-binding PIWI protein to repress transposable elements., Dev Cell, PMID 35429435
PXD031331 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic analysis of differential anther development from sterile/fertile lines in Capsicum annuum L.Possible reference: Pei, H. et al. (2022) Proteomic analysis of differential anther development from sterile/fertile lines in Capsicum annuum L., PeerJ, PMID 35651745
PXD031322 Dataset with its publication pending (from PRIDE)Dataset title: Quantitative proteomic analysis of oxaliplatin induced peripheral neurotoxicityPossible reference: Yang, L. et al. (2022) Quantitative proteomic analysis of oxaliplatin induced peripheral neurotoxicity., J Proteomics, PMID 35830924
PXD031319 Dataset with its publication pending (from PRIDE)Dataset title: Novel assays monitoring direct GR protein activity exhibit high predictive power for ligand activity on endogenous GR gene targetsPossible reference: Van Moortel, L. et al. (2022) Novel assays monitoring direct glucocorticoid receptor protein activity exhibit high predictive power for ligand activity on endogenous gene targets., Biomed Pharmacother, PMID 35709653
PXD031318 Dataset with its publication pending (from PRIDE)Dataset title: Changes in saliva associated to COVID-19: a proteomic studyPossible reference: Muñoz-Prieto, A. et al. (2022) Saliva changes in composition associated to COVID-19: a preliminary study., Sci Rep, PMID 35760827
PXD031315 Dataset with its publication pending (from PRIDE)Dataset title: The structural basis of Cdc7-Dbf4 kinase dependent targeting and phosphorylation of the MCM2-7 double hexamerPossible reference: Saleh, A. et al. (2022) The structural basis of Cdc7-Dbf4 kinase dependent targeting and phosphorylation of the MCM2-7 double hexamer., Nat Commun, PMID 35614055
PXD031311 Dataset with its publication pending (from PRIDE)Dataset title: RIF1-ASF1-mediated high-order chromatin structure safeguards genome integrityPossible reference: Feng, S. et al. (2022) RIF1-ASF1-mediated high-order chromatin structure safeguards genome integrity., Nat Commun, PMID 35177609
PXD031303 Dataset with its publication pending (from iProX)Dataset title: Neddylation is Essential for beta-catenin Degradation in Wnt Signaling PathwayPossible reference: Jumpertz, S. et al. (2017) CSN5/JAB1 suppresses the WNT inhibitor DKK1 in colorectal cancer cells., Cell Signal, PMID 28229932
PXD031299 no publication (from MassIVE)Dataset title: Bacterial Proteomics - AMPs stressing action Possible reference: Maria-Neto, S. et al. (2012) Deciphering the magainin resistance process of Escherichia coli strains in light of the cytosolic proteome., Antimicrob Agents Chemother, PMID 22290970
PXD031290 Dataset with its publication pending (from iProX)Dataset title: Serum Proteome profiling of CryoglobulinemiaPossible reference: Wang, JJ. et al. (2018) Molecular Profiling and Clonal Tracking of Secreted Rheumatoid Factors in Primary Sjögren's Syndrome., Arthritis Rheumatol, PMID 29697211
PXD031287 Dataset with its publication pending (from iProX)Dataset title: Serum proteomics unveil characteristic protein diagnostic biomarkers and signaling pathways in patients with esophageal squamous cell carcinomaPossible reference: Liu, W. et al. (2022) Serum proteomics unveil characteristic protein diagnostic biomarkers and signaling pathways in patients with esophageal squamous cell carcinoma., Clin Proteomics, PMID 35610567
PXD031278 Dataset with its publication pending (from PRIDE)Dataset title: Thrombo-Inflammation in Preeclampsia and Pregnancy Induced Hypertension: Proteomics And Metabolomics Profiling of Platelets and Plasma MediatorsPossible reference: de Almeida, LGN. et al. (2022) Proteomics and Metabolomics Profiling of Platelets and Plasma Mediators of Thrombo-Inflammation in Gestational Hypertension and Preeclampsia., Cells, PMID 35455936
PXD031277 Dataset with its publication pending (from PRIDE)Dataset title: Optimal analytical strategies for sensitive and quantitative phosphoproteomics using TMT-based multiplexingPossible reference: Koenig, C. et al. (2022) Optimal analytical strategies for sensitive and quantitative phosphoproteomics using TMT-based multiplexing., Proteomics, PMID 35713889
PXD031229 Dataset with its publication pending (from PRIDE)Dataset title: Knockdown of DHRS7 in LNCaP cellsPossible reference: Seibert, JK. et al. (2015) A role for the dehydrogenase DHRS7 (SDR34C1) in prostate cancer., Cancer Med, PMID 26311046
PXD031225 Dataset with its publication pending (from PRIDE)Dataset title: Structure-guided mutagenesis of a mucin-selective metalloprotease from Akkermansia muciniphila alters substrate preferencesPossible reference: Shon, DJ. et al. (2022) Structure-guided mutagenesis of a mucin-selective metalloprotease from Akkermansia muciniphila alters substrate preferences., J Biol Chem, PMID 35405095
PXD031224 Dataset with its publication pending (from PRIDE)Dataset title: RIPK3 is released into Extracellular Vesicles during Necroptosis through a Rab27 independent mechanismPossible reference: Gupta, K. et al. (2022) Necroptosis is associated with Rab27-independent expulsion of extracellular vesicles containing RIPK3 and MLKL., J Extracell Vesicles, PMID 36063142
PXD031222 Dataset with its publication pending (from PRIDE)Dataset title: Augmented enterocyte damage during Candida albicans and Proteus mirabilis coinfectionPossible reference: Niemiec, MJ. et al. (2022) Augmented Enterocyte Damage During Candida albicans and Proteus mirabilis Coinfection., Front Cell Infect Microbiol, PMID 35651758
PXD031216 Dataset with its publication pending (from PRIDE)Dataset title: Effects of non-thermal methods (High-Pressure Processing, UV-C irradiation and thermoultrasonication) on donor human milk safety and functionalityPossible reference: Kontopodi, E. et al. (2022) Effects of High-Pressure Processing, UV-C Irradiation and Thermoultrasonication on Donor Human Milk Safety and Quality., Front Pediatr, PMID 35386262
PXD031213 Dataset with its publication pending (from PRIDE)Dataset title: Transcriptome innovations in primates revealed by single-molecule long-read sequencingPossible reference: Shi, L. et al. (2016) Long-read sequencing and de novo assembly of a Chinese genome., Nat Commun, PMID 27356984
PXD031199 Dataset with its publication pending (from PRIDE)Dataset title: A phylogenomic approach to explore the Aspergillus fumigatus conidia surforme and its role in pathogenesisPossible reference: Valero, C. et al. (2023) A phylogenetic approach to explore the Aspergillus fumigatus conidial surface-associated proteome and its role in pathogenesis., bioRxiv, PMID 37662192
PXD031197 Dataset with its publication pending (from PRIDE)Dataset title: TurboID-based proximity labeling to identify LONP1-targeting proteinsPossible reference: Zhang, Y. et al. (2019) TurboID-based proximity labeling reveals that UBR7 is a regulator of N NLR immune receptor-mediated immunity., Nat Commun, PMID 31324801
PXD031193 Dataset with its publication pending (from PRIDE)Dataset title: Chronic stress causes striatal disinhibition mediated by SOM-interneuronsPossible reference: Rodrigues, D. et al. (2022) Chronic stress causes striatal disinhibition mediated by SOM-interneurons in male mice., Nat Commun, PMID 36446783
PXD031184 Dataset with its publication pending (from iProX)Dataset title: Protein glycosylation changes during systemic acquired resistance in Arabidopsis thalianaPossible reference: Holmes, EC. et al. (2021) Arabidopsis UGT76B1 glycosylates N-hydroxy-pipecolic acid and inactivates systemic acquired resistance in tomato., Plant Cell, PMID 33955491
PXD031174 Dataset with its publication pending (from PRIDE)Dataset title: Aging-Associated Changes in CSF Protein Abundances and Structures Revealed by a Modified LiP-MS ScreenPossible reference: Shuken, SR. et al. (2022) Limited Proteolysis-Mass Spectrometry Reveals Aging-Associated Changes in Cerebrospinal Fluid Protein Abundances and Structures., Nat Aging, PMID 36741774
PXD031173 Dataset with its publication pending (from PRIDE)Dataset title: Bacterial necromass is rapidly metabolized by heterotrophic bacteria and supports multiple trophic levels of the groundwater microbiomePossible reference: Geesink, P. et al. (2022) Bacterial Necromass Is Rapidly Metabolized by Heterotrophic Bacteria and Supports Multiple Trophic Levels of the Groundwater Microbiome., Microbiol Spectr, PMID 35699474
PXD031170 Dataset with its publication pending (from PRIDE)Dataset title: Replisome composition of stalled, terminating replication forksPossible reference: Priego Moreno, S. et al. (2019) Mitotic replisome disassembly depends on TRAIP ubiquitin ligase activity., Life Sci Alliance, PMID 30979826
PXD031169 Dataset with its publication pending (from PRIDE)Dataset title: Engineering and exploiting synthetic allostery of NanoLuc luciferasePossible reference: Guo, Z. et al. (2022) Engineering and exploiting synthetic allostery of NanoLuc luciferase., Nat Commun, PMID 35145068
PXD031147 Dataset with its publication pending (from PRIDE)Dataset title: Comparing two acetification profiles from natural raw materials: a quantitative approach in Komagataeibacter europaeusPossible reference: Román-Camacho, JJ. et al. (2022) Unraveling the Role of Acetic Acid Bacteria Comparing Two Acetification Profiles From Natural Raw Materials: A Quantitative Approach in Komagataeibacter europaeus., Front Microbiol, PMID 35572698
PXD031144 Dataset with its publication pending (from PRIDE)Dataset title: Regulators of proteostasis are translationally repressed in fibroblasts from sporadic and LRRK2-G2019S Parkinson’s patientsPossible reference: Flinkman, D. et al. (2023) Regulators of proteostasis are translationally repressed in fibroblasts from patients with sporadic and LRRK2-G2019S Parkinson's disease., NPJ Parkinsons Dis, PMID 36746972
PXD031139 no publication (from MassIVE)Dataset title: How do Protein Contaminants Influence DDA and DIA Proteomics? Possible reference: Frankenfield, AM. et al. (2022) Protein Contaminants Matter: Building Universal Protein Contaminant Libraries for DDA and DIA Proteomics., J Proteome Res, PMID 35793413
PXD031136 Dataset with its publication pending (from PRIDE)Dataset title: Decoupling astrocytes in adult mice impairs synaptic plasticity and spatial learningPossible reference: Hösli, L. et al. (2022) Decoupling astrocytes in adult mice impairs synaptic plasticity and spatial learning., Cell Rep, PMID 35263595
PXD031128 Dataset with its publication pending (from jPOST)Dataset title: Selective removal of unhydrolyzed monolinked peptides from enriched crosslinked peptides to improve the coverage of protein complexes analysisPossible reference: An, Y. et al. (2022) Selective Removal of Unhydrolyzed Monolinked Peptides from Enriched Crosslinked Peptides To Improve the Coverage of Protein Complex Analysis., Anal Chem, PMID 35191685
PXD031124 Dataset with its publication pending (from PRIDE)Dataset title: Genotyping-by-sequencing-based identification of Arabidopsis pattern recognition receptor RLP32 recognizing proteobacterial translation initiation factor IF1Possible reference: Fan, L. et al. (2022) Genotyping-by-sequencing-based identification of Arabidopsis pattern recognition receptor RLP32 recognizing proteobacterial translation initiation factor IF1., Nat Commun, PMID 35277499
PXD031123 Dataset with its publication pending (from PRIDE)Dataset title: A seed-like proteome in oil-rich tubersPossible reference: Niemeyer, PW. et al. (2022) A seed-like proteome in oil-rich tubers., Plant J, PMID 36050843
PXD031115 Dataset with its publication pending (from PRIDE)Dataset title: Prenylcysteine oxidase 1 like protein is required for neutrophil bactericidal activities Possible reference: Petenkova, A. et al. (2023) Prenylcysteine oxidase 1 like protein is required for neutrophil bactericidal activities., Nat Commun, PMID 37179332
PXD031114 Dataset with its publication pending (from PRIDE)Dataset title: Optimized TMT-based quantitative cross-linking mass spectrometry strategy for large-scale interactomic studiesPossible reference: Ruwolt, M. et al. (2022) Optimized TMT-Based Quantitative Cross-Linking Mass Spectrometry Strategy for Large-Scale Interactomic Studies., Anal Chem, PMID 35290030
PXD031109 Dataset with its publication pending (from PRIDE)Dataset title: comparative mass spectrometry analysis of the PARP1 and PAR-PARP1 interactomesPossible reference: Pavan, IC. et al. (2016) Different interactomes for p70-S6K1 and p54-S6K2 revealed by proteomic analysis., Proteomics, PMID 27493124
PXD031103 Dataset with its publication pending (from jPOST)Dataset title: Proteome-wide deconvolution of drug targets and binding sites by lysine reactivity profilingPossible reference: Ruan, C. et al. (2022) Proteome-Wide Deconvolution of Drug Targets and Binding Sites by Lysine Reactivity Profiling., Anal Chem, PMID 35147412
PXD031102 no publication (from MassIVE)Dataset title: Proteomic identification of phosphorylation dependent Septin 7 interactors that drive dendritic spine formationPossible reference: Byeon, S. et al. (2022) Proteomic Identification of Phosphorylation-Dependent Septin 7 Interactors that Drive Dendritic Spine Formation., Front Cell Dev Biol, PMID 35602601
PXD031083 Dataset with its publication pending (from PRIDE)Dataset title: Gel-like inclusions of C-terminal fragments of TDP-43 sequester stalled proteasomes in neuronsPossible reference: Riemenschneider, H. et al. (2022) Gel-like inclusions of C-terminal fragments of TDP-43 sequester stalled proteasomes in neurons., EMBO Rep, PMID 35438230
PXD031078 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic Investigation of Evolved Daptomycin-Tolerant MRSA due to Mutation in YycHPossible reference: Sulaiman, JE. et al. (2022) Mutation in the Two-Component System Regulator YycH Leads to Daptomycin Tolerance in Methicillin-Resistant Staphylococcus aureus upon Evolution with a Population Bottleneck., Microbiol Spectr, PMID 35913149
PXD031072 Dataset with its publication pending (from PRIDE)Dataset title: A plant tethering system for the functional study of protein-RNA interactions in vivoPossible reference: Cuerda-Gil, D. et al. (2022) A plant tethering system for the functional study of protein-RNA interactions in vivo., Plant Methods, PMID 35658900
PXD031070 Dataset with its publication pending (from PRIDE)Dataset title: A proteome-level investigation into Plasmodiophora brassicae resistance in Brassica napus canolaPossible reference: Adhikary, D. et al. (2022) A Proteome-Level Investigation Into Plasmodiophora brassicae Resistance in Brassica napus Canola., Front Plant Sci, PMID 35401597
PXD031063 Dataset with its publication pending (from PRIDE)Dataset title: ABP1-TMK auxin perception mediates rapid phosphorylation for regeneration and auxin canalizationPossible reference: Friml, J. et al. (2022) ABP1-TMK auxin perception for global phosphorylation and auxin canalization., Nature, PMID 36071161
PXD031059 Maven et al., The multi-lineage transcription factor ISL1 controls cardiomyocyte cell fate through interaction with NKX2.5, Stem Cell Reports (2023), https://doi.org/10.1016/j.stemcr.2023.09.014 (from PanoramaPublic)Dataset title: The multi-lineage transcription factor ISL1 controls cardiomyocyte cell fate through interaction with NKX2.5Possible reference: Maven, BEJ. et al. (2023) The multi-lineage transcription factor ISL1 controls cardiomyocyte cell fate through interaction with NKX2.5., Stem Cell Reports, PMID 37863045
PXD031054 Dataset with its publication pending (from PRIDE)Dataset title: Quantitative proteomics and in-cell cross-linking reveal cellular reorganisation during early neuronal differentiation of SH-SY5Y cellsPossible reference: Barth, M. et al. (2022) Quantitative proteomics and in-cell cross-linking reveal cellular reorganisation during early neuronal differentiation of SH-SY5Y cells., Commun Biol, PMID 35672350
PXD031048 Dataset with its publication pending (from PRIDE)Dataset title: An efficient urine peptidomics workflow identifies chemically defined dietary gluten peptides from patients with celiac diseasePossible reference: Palanski, BA. et al. (2022) An efficient urine peptidomics workflow identifies chemically defined dietary gluten peptides from patients with celiac disease., Nat Commun, PMID 35173144
PXD031046 Dataset with its publication pending (from PRIDE)Dataset title: Tgfbr2 in dental pulp cells guides neurite outgrowth in developing teethPossible reference: Stanwick, M. et al. (2022) Tgfbr2 in Dental Pulp Cells Guides Neurite Outgrowth in Developing Teeth., Front Cell Dev Biol, PMID 35265620
PXD031021 Dataset with its publication pending (from iProX)Dataset title: Glycyrrhetinic acid restricts mitochondrial energy metabolism through targeting SHMT2Possible reference: Jin, X. et al. (2022) Glycyrrhetinic acid restricts mitochondrial energy metabolism by targeting SHMT2., iScience, PMID 35602963
PXD031016 Dataset with its publication pending (from PRIDE)Dataset title: Isoform-dependent lysosomal degradation and internalization of Apolipoprotein E requires autophagy proteinsPossible reference: Fote, GM. et al. (2022) Isoform-dependent lysosomal degradation and internalization of apolipoprotein E requires autophagy proteins., J Cell Sci, PMID 34982109
PXD030995 Dataset with its publication pending (from PRIDE)Dataset title: Metabolic control of adult neural stem cell self-renewal by the mitochondrial protease YME1LPossible reference: Wani, GA. et al. (2022) Metabolic control of adult neural stem cell self-renewal by the mitochondrial protease YME1L., Cell Rep, PMID 35172139
PXD030979 Dataset with its publication pending (from PRIDE)Dataset title: Quantitative proteomics on pink1 mutant Drosophila melanogasterPossible reference: Auburger, G. et al. (2019) SerThr-PhosphoProteome of Brain from Aged PINK1-KO+A53T-SNCA Mice Reveals pT1928-MAP1B and pS3781-ANK2 Deficits, as Hub between Autophagy and Synapse Changes., Int J Mol Sci, PMID 31277379
PXD030963 Dataset with its publication pending (from PRIDE)Dataset title: Off the shelf proximity biotinylation using ProtA-TurboIDPossible reference: Santos-Barriopedro, I. et al. (2023) Off-the-shelf proximity biotinylation using ProtA-TurboID., Nat Protoc, PMID 36224470
PXD030955 Dataset with its publication pending (from PRIDE)Dataset title: Characteristics of extracellular vesicles secreted by senescent human vascular smooth muscle cells and its influence on immune cells.Possible reference: GÅ‚uchowska, A. et al. (2022) Unbiased proteomic analysis of extracellular vesicles secreted by senescent human vascular smooth muscle cells reveals their ability to modulate immune cell functions., Geroscience, PMID 35900662
PXD030953 Dataset with its publication pending (from PRIDE)Dataset title: Spatiotemporal expression of regulatory kinases directs the transition from mitosis to cellular morphogenesis in DrosophilaPossible reference: Yang, S. et al. (2022) Spatiotemporal expression of regulatory kinases directs the transition from mitosis to cellular morphogenesis in Drosophila., Nat Commun, PMID 35140224
PXD030940 Dataset with its publication pending (from PRIDE)Dataset title: Cell membrane remodeling mediates polymyxin B resistance in Klebsiella pneumoniae: an integrated proteomics and metabolomics studyPossible reference: Chen, X. et al. (2022) Cell Membrane Remodeling Mediates Polymyxin B Resistance in Klebsiella pneumoniae: An Integrated Proteomics and Metabolomics Study., Front Microbiol, PMID 35222333
PXD030936 Dataset with its publication pending (from PRIDE)Dataset title: Red blood cells protein profile is modified in breast cancer patientsPossible reference: Pereira-Veiga, T. et al. (2022) Red Blood Cells Protein Profile Is Modified in Breast Cancer Patients., Mol Cell Proteomics, PMID 36519745
PXD030925 Dataset with its publication pending (from PRIDE)Dataset title: Rapidly evolving genes underlie Aedes aegypti mosquito reproductive resilience during droughtPossible reference: Venkataraman, K. et al. (2023) Two novel, tightly linked, and rapidly evolving genes underlie Aedes aegypti mosquito reproductive resilience during drought., Elife, PMID 36744865
PXD030915 Dataset with its publication pending (from PRIDE)Dataset title: Spatiotemporal profiling of the bovine oviduct fluid proteome around the time of ovulationPossible reference: Mahé, C. et al. (2022) Spatiotemporal profiling of the bovine oviduct fluid proteome around the time of ovulation., Sci Rep, PMID 35264682
PXD030896 Dataset with its publication pending (from jPOST)Dataset title: Proteome of FAO deficient mouse modelPossible reference: Benitez-Amaro, A. et al. (2020) Low-density lipoprotein receptor-related protein 1 deficiency in cardiomyocytes reduces susceptibility to insulin resistance and obesity., Metabolism, PMID 32112822
PXD030889 Dataset with its publication pending (from PRIDE)Dataset title: Translation rescue by targeting Ppp1r15a upstream open reading frame in vivoPossible reference: Kidwell, A. et al. (2023) Translation Rescue by Targeting Ppp1r15a through Its Upstream Open Reading Frame in Sepsis-Induced Acute Kidney Injury in a Murine Model., J Am Soc Nephrol, PMID 36283811
PXD030886 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic and functional analyses of the periodic membrane skeleton in neuronsPossible reference: Zhou, R. et al. (2022) Proteomic and functional analyses of the periodic membrane skeleton in neurons., Nat Commun, PMID 35680881
PXD030870 no publication (from MassIVE)Dataset title: Proteomic screen reveals diverse protein transport between connected neurons in the visual system.Possible reference: Schiapparelli, LM. et al. (2022) Proteomic screen reveals diverse protein transport between connected neurons in the visual system., Cell Rep, PMID 35081342
PXD030854 Dataset with its publication pending (from iProX)Dataset title: Proteomic insight into soybean response to flooding stress reveals changes in energy metabolism and cell wall modificationsPossible reference: Khan, MN. et al. (2022) Proteomic insight into soybean response to flooding stress reveals changes in energy metabolism and cell wall modifications., PLoS One, PMID 35511817
PXD030839 Dataset with its publication pending (from PRIDE)Dataset title: Data of chemical composition of the particles from OH-initiated oxidation of 1,3,5-trimethylbenzenePossible reference: Lin, X. et al. (2022) Data of chemical composition of the particles from OH-initiated oxidation of 1,3,5-trimethylbenzene., Data Brief, PMID 35496493
PXD030837 Dataset with its publication pending (from PRIDE)Dataset title: A G-protein-coupled receptor modulates gametogenesis via PKG-mediated signaling cascade in Plasmodium bergheiPossible reference: Wang, PP. et al. (2022) A G-Protein-Coupled Receptor Modulates Gametogenesis via PKG-Mediated Signaling Cascade in Plasmodium berghei., Microbiol Spectr, PMID 35404079
PXD030821 Dataset with its publication pending (from PRIDE)Dataset title: Secretomics of human pluripotent stem cell derived neural progenitor cells and induced astrocytes.Possible reference: Araujo, BHS. et al. (2018) Down Syndrome iPSC-Derived Astrocytes Impair Neuronal Synaptogenesis and the mTOR Pathway In Vitro., Mol Neurobiol, PMID 29128905
PXD030820 Dataset with its publication pending (from PRIDE)Dataset title: The Inhibitory Receptor Siglec-8 Interacts with FcεRI and Globally Inhibits Intracellular Signaling in Primary Mast Cells Upon ActivationPossible reference: Korver, W. et al. (2022) The Inhibitory Receptor Siglec-8 Interacts With FcεRI and Globally Inhibits Intracellular Signaling in Primary Mast Cells Upon Activation., Front Immunol, PMID 35154156
PXD030819 Dataset with its publication pending (from PRIDE)Dataset title: Protein-based engineering of the initial acquired enamel pellicle in vivo: proteomic evaluationPossible reference: Araújo, TT. et al. (2022) Protein-based engineering of the initial acquired enamel pellicle in vivo: Proteomic evaluation., J Dent, PMID 34798481
PXD030818 Dataset with its publication pending (from PRIDE)Dataset title: Quantitative proteomic study reveals differential expression of matricellular proteins between fibrous dysplasia and cemento-ossifying fibroma pathogenesisPossible reference: Duarte-Andrade, FF. et al. (2022) Quantitative proteomic study reveals differential expression of matricellular proteins between fibrous dysplasia and cemento-ossifying fibroma pathogenesis., J Oral Pathol Med, PMID 35103997
PXD030804 Dataset with its publication pending (from PRIDE)Dataset title: Precision structural interpretation of site-specific N-glycans in seminal plasmaPossible reference: Xin, M. et al. (2022) Precision Structural Interpretation of Site-Specific N-Glycans in Seminal Plasma., J Proteome Res, PMID 35616904
PXD030798 Dataset with its publication pending (from PRIDE)Dataset title: Proteome-Wide Analysis of Lysine 2-Hydroxyisobutyrylation in Frankliniella occidentalisPossible reference: Ding, C. et al. (2022) Proteome-wide analysis of lysine 2-hydroxyisobutyrylation in Frankliniella occidentalis., BMC Genomics, PMID 36038823
PXD030797 Dataset with its publication pending (from PRIDE)Dataset title: Comparison of SPEED, S-Trap, and In-Solution based sample preparation methods for tandem mass spectrometryPossible reference: Templeton, EM. et al. (2023) Comparison of SPEED, S-Trap, and In-Solution-Based Sample Preparation Methods for Mass Spectrometry in Kidney Tissue and Plasma., Int J Mol Sci, PMID 37047281
PXD030796 Dataset with its publication pending (from PRIDE)Dataset title: Comparison of SPEED, S-Trap, and In-Solution based sample preparation methods for tandem mass spectrometryPossible reference: Templeton, EM. et al. (2023) Comparison of SPEED, S-Trap, and In-Solution-Based Sample Preparation Methods for Mass Spectrometry in Kidney Tissue and Plasma., Int J Mol Sci, PMID 37047281
PXD030792 Dataset with its publication pending (from iProX)Dataset title: Proteomics analysis of RRDCD VitreousPossible reference: Wu, Z. et al. (2016) Identification of Potential Biomarkers for Rhegmatogenous Retinal Detachment Associated with Choroidal Detachment by Vitreous iTRAQ-Based Proteomic Profiling., Int J Mol Sci, PMID 27941623
PXD030785 Dataset with its publication pending (from PRIDE)Dataset title: Protective immune trajectories in early viral containment of non-pneumonic SARS-CoV-2 infectionPossible reference: Pekayvaz, K. et al. (2022) Protective immune trajectories in early viral containment of non-pneumonic SARS-CoV-2 infection., Nat Commun, PMID 35197461
PXD030782 Dataset with its publication pending (from PRIDE)Dataset title: Peroxisome-derived hydrogen peroxide can modulate the sulfenylation profiles of key redox signaling proteins in Flp-In T-REx 293 cellsPossible reference: Lismont, C. et al. (2022) Peroxisome-Derived Hydrogen Peroxide Modulates the Sulfenylation Profiles of Key Redox Signaling Proteins in Flp-In T-REx 293 Cells., Front Cell Dev Biol, PMID 35557958
PXD030776 Dataset with its publication pending (from PRIDE)Dataset title: The proto-oncogene TCL1A deregulates mitotic checkpoint transition and genomic stability in CLLPossible reference: Stachelscheid, J. et al. (2023) The proto-oncogene TCL1A deregulates cell cycle and genomic stability in CLL., Blood, PMID 36179280
PXD030773 Dataset with its publication pending (from PRIDE)Dataset title: The proto-oncogene TCL1A deregulates mitotic checkpoint transition and genomic stability in CLLPossible reference: Stachelscheid, J. et al. (2023) The proto-oncogene TCL1A deregulates cell cycle and genomic stability in CLL., Blood, PMID 36179280
PXD030757 Dataset with its publication pending (from PRIDE)Dataset title: Integrative metabolomics, proteomics and transcriptomics analysis reveals liver toxicity of mesoporous silica nanoparticlesPossible reference: Li, J. et al. (2022) Integrative Metabolomics, Proteomics and Transcriptomics Analysis Reveals Liver Toxicity of Mesoporous Silica Nanoparticles., Front Pharmacol, PMID 35153799
PXD030754 Dataset with its publication pending (from PRIDE)Dataset title: Histidine Kinase Inhibitors Impair Shoot Regeneration in Arabidopsis thaliana via Cytokinin Signalling and SAM Patterning DeterminantsPossible reference: Lardon, R. et al. (2022) Histidine kinase inhibitors impair shoot regeneration in Arabidopsis thaliana via cytokinin signaling and SAM patterning determinants., Front Plant Sci, PMID 36684719
PXD030729 Dataset with its publication pending (from PRIDE)Dataset title: Identification of CCNF/Cyclin F targetsPossible reference: Zhang, Y. et al. (2021) Identification of hub genes in colorectal cancer based on weighted gene co-expression network analysis and clinical data from The Cancer Genome Atlas., Biosci Rep, PMID 34308980
PXD030725 Dataset with its publication pending (from PRIDE)Dataset title: Integrated Proteogenomic Characterization of Adenocarcinoma of the esophagogastric junctionPossible reference: Li, S. et al. (2023) Integrative proteomic characterization of adenocarcinoma of esophagogastric junction., Nat Commun, PMID 36774361
PXD030712 Dataset with its publication pending (from PRIDE)Dataset title: Salivary Hemoglobin Protects against Erosive Tooth Wear in Gastric Reflux PatientsPossible reference: Martini, T. et al. (2020) Salivary Hemoglobin Protects against Erosive Tooth Wear in Gastric Reflux Patients., Caries Res, PMID 33171464
PXD030708 Dataset with its publication pending (from PRIDE)Dataset title: MetaNovo : an open-source pipeline for probabilistic peptide discovery in complex metaproteomic datasetsPossible reference: Potgieter, MG. et al. (2023) MetaNovo: An open-source pipeline for probabilistic peptide discovery in complex metaproteomic datasets., PLoS Comput Biol, PMID 37327214
PXD030673 no publication (from MassIVE)Dataset title: Proximity Profiling of the CFTR Interaction Landscape In Response to OrkambiPossible reference: Iazzi, M. et al. (2022) Proximity Profiling of the CFTR Interaction Landscape in Response to Orkambi., Int J Mol Sci, PMID 35269585
PXD030672 Dataset with its publication pending (from PRIDE)Dataset title: Off-target effects of the lysosomal acid lipase inhibitors Lalistat-1 and Lalistat-2 on neutral lipid hydrolasesPossible reference: Bradić, I. et al. (2022) Off-target effects of the lysosomal acid lipase inhibitors Lalistat-1 and Lalistat-2 on neutral lipid hydrolases., Mol Metab, PMID 35504532
PXD030669 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic analyses of excess starch and early senescent leaf mutant lses1 in ricePossible reference: Chen, Z. et al. (2022) Integration of transcriptomic and proteomic analyses reveals several levels of metabolic regulation in the excess starch and early senescent leaf mutant lses1 in rice., BMC Plant Biol, PMID 35321646
PXD030667 Dataset with its publication pending (from PRIDE)Dataset title: Integrated Proteogenomic Characterization of Adenocarcinoma of the esophagogastric junctionPossible reference: Li, S. et al. (2023) Integrative proteomic characterization of adenocarcinoma of esophagogastric junction., Nat Commun, PMID 36774361
PXD030666 Dataset with its publication pending (from PRIDE)Dataset title: Systematic identification of factors involved in the silencing of germline genes in mouse embryonic stem cellsPossible reference: Al Adhami, H. et al. (2023) Systematic identification of factors involved in the silencing of germline genes in mouse embryonic stem cells., Nucleic Acids Res, PMID 36772830
PXD030663 Dataset with its publication pending (from PRIDE)Dataset title: Cell-type-specific labeling and profiling of glycans in living micePossible reference: Fan, X. et al. (2022) Cell-type-specific labeling and profiling of glycans in living mice., Nat Chem Biol, PMID 35513511
PXD030633 Dataset with its publication pending (from PRIDE)Dataset title: Cellular Protein Client Recovery by Human Hsp40s DNAJB1 and DNAJB8Possible reference: Montoya, MR. et al. (2024) Factors affecting protein recovery during Hsp40 affinity profiling., Anal Bioanal Chem, PMID 38850318
PXD030631 Dataset with its publication pending (from PRIDE)Dataset title: OXSR1 inhibits inflammasome activation by limiting potassium efflux during mycobacterial infectionPossible reference: Hortle, E. et al. (2022) OXSR1 inhibits inflammasome activation by limiting potassium efflux during mycobacterial infection., Life Sci Alliance, PMID 35545295
PXD030630 Dataset with its publication pending (from PRIDE)Dataset title: Patterning of the autotrophic, mixotrophic and heterotrophic proteomes of oxygen evolving cyanobacterium Synechocystis sp. PCC 6803Possible reference: Muth-Pawlak, D. et al. (2022) Patterning of the Autotrophic, Mixotrophic, and Heterotrophic Proteomes of Oxygen-Evolving Cyanobacterium Synechocystis sp. PCC 6803., Front Microbiol, PMID 35694301
PXD030619 Dataset with its publication pending (from PRIDE)Dataset title: Mass Spectrometry Uncovers Protein Interactions and Stoichiometry of Intermediates and Sub-complexes for SNARE Complex AssemblyPossible reference: Hesselbarth, J. et al. (2023) Mass spectrometry uncovers intermediates and off-pathway complexes for SNARE complex assembly., Commun Biol, PMID 36806321
PXD030613 Dataset with its publication pending (from PRIDE)Dataset title: Venomics analysis of Thai Daboia siamensis using integrated omics dataPossible reference: Saethang, T. et al. (2022) Identification of Daboia siamensis venome using integrated multi-omics data., Sci Rep, PMID 35907887
PXD030609 Dataset with its publication pending (from PRIDE)Dataset title: Two closely related white rot fungi, Obba rivulosa and Gelatoporia subvermispora, produce orthologous plant cell wall degrading enzymes for spruce wood degradationPossible reference: Marinovíc, M. et al. (2022) Comparative Analysis of Enzyme Production Patterns of Lignocellulose Degradation of Two White Rot Fungi: Obba rivulosa and Gelatoporia subvermispora., Biomolecules, PMID 35892327
PXD030593 Dataset with its publication pending (from PRIDE)Dataset title: Human cerebrospinal fluid after subarachnoid hemorrhage LC-MSMSPossible reference: Hopkins, K. et al. (2023) Comparative proteomic analysis of ventricular and cisternal cerebrospinal fluid in haemorrhagic stroke patients., J Clin Neurosci, PMID 36525746
PXD030591 Dataset with its publication pending (from PRIDE)Dataset title: Promiscuity of peptides presented in HLA-DP molecules from different immunogenicity groups is associated with T-cell cross-reactivityPossible reference: Laghmouchi, A. et al. (2022) Promiscuity of Peptides Presented in HLA-DP Molecules from Different Immunogenicity Groups Is Associated With T-Cell Cross-Reactivity., Front Immunol, PMID 35251023
PXD030580 Dataset with its publication pending (from PRIDE)Dataset title: UBIQUITIN LIGASE STUB1 DESTABILIZES IFNγ-RECEPTOR COMPLEX TO SUPPRESS TUMOR IFNγ SIGNALINGPossible reference: Apriamashvili, G. et al. (2022) Ubiquitin ligase STUB1 destabilizes IFNγ-receptor complex to suppress tumor IFNγ signaling., Nat Commun, PMID 35395848
PXD030569 Dataset with its publication pending (from PRIDE)Dataset title: Enhancer RNAs stimulate Pol II pause release by harnessing multivalent interactions to NELFPossible reference: Gorbovytska, V. et al. (2022) Enhancer RNAs stimulate Pol II pause release by harnessing multivalent interactions to NELF., Nat Commun, PMID 35508485
PXD030539 Dataset with its publication pending (from PRIDE)Dataset title: thermal proteome profiling of hypomethylating agents in infant ALLPossible reference: Cheung, LC. et al. (2023) Preclinical efficacy of azacitidine and venetoclax for infant KMT2A-rearranged acute lymphoblastic leukemia reveals a new therapeutic strategy., Leukemia, PMID 36380143
PXD030537 Dataset with its publication pending (from PRIDE)Dataset title: Metal removal capability of two cyanobacterial species in autotrophic and mixotrophic mode of nutritionPossible reference: Ghorbani, E. et al. (2022) Metal removal capability of two cyanobacterial species in autotrophic and mixotrophic mode of nutrition., BMC Microbiol, PMID 35176992
PXD030535 Dataset with its publication pending (from PRIDE)Dataset title: Metal removal capability of two cyanobacterial species in autotrophic and mixotrophic mode of nutritionPossible reference: Ghorbani, E. et al. (2022) Metal removal capability of two cyanobacterial species in autotrophic and mixotrophic mode of nutrition., BMC Microbiol, PMID 35176992
PXD030532 Dataset with its publication pending (from PRIDE)Dataset title: Cross-linking of the Endolysosomal System Reveals Potential Flotillin Structures and CargoPossible reference: Singh, J. et al. (2022) Cross-linking of the endolysosomal system reveals potential flotillin structures and cargo., Nat Commun, PMID 36266287
PXD030530 no publication (from MassIVE)Dataset title: SIRT5 is a proviral factor that interacts with SARS-CoV-2 Nsp14 proteinPossible reference: Walter, M. et al. (2022) SIRT5 is a proviral factor that interacts with SARS-CoV-2 Nsp14 protein., bioRxiv, PMID 35018374
PXD030529 Dataset with its publication pending (from PRIDE)Dataset title: Palaeoproteomics identifies beaver fur and fur trade in Danish high-status Viking Age burialsPossible reference: Brandt, LØ. et al. (2022) Palaeoproteomics identifies beaver fur in Danish high-status Viking Age burials - direct evidence of fur trade., PLoS One, PMID 35895633
PXD030494 Dataset with its publication pending (from PRIDE)Dataset title: Baseline Proteomics Characterisation of Biomanufacturing Organism Halomonas BluephagenesisPossible reference: Russell, M. et al. (2022) Baseline proteomics characterisation of the emerging host biomanufacturing organism Halomonas bluephagenesis., Sci Data, PMID 35963929
PXD030492 Dataset with its publication pending (from PRIDE)Dataset title: Dynamics of allosteric regulation of the phospholipase C-gamma isoformPossible reference: Hajicek, N. et al. (2019) Structural basis for the activation of PLC-γ isozymes by phosphorylation and cancer-associated mutations., Elife, PMID 31889510
PXD030490 no publication (from MassIVE)Dataset title: Proximity proteomics of C9orf72 dipeptide repeat proteinsPossible reference: BožiÄ, J. et al. (2022) Interactome screening of C9orf72 dipeptide repeats reveals VCP sequestration and functional impairment by polyGA., Brain, PMID 34534264
PXD030473 Dataset with its publication pending (from iProX)Dataset title: 2018YFC0910200-application demonstration of key technologies for national omics data quality controlPossible reference: Zhao, B. et al. (2020) NPF:network propagation for protein function prediction., BMC Bioinformatics, PMID 32787776
PXD030467 Dataset with its publication pending (from PRIDE)Dataset title: Functional Requirements for a Samd14-Capping Protein Complex in Stress ErythropoiesisPossible reference: Ray, S. et al. (2022) Functional requirements for a Samd14-capping protein complex in stress erythropoiesis., Elife, PMID 35713400
PXD030458 Dataset with its publication pending (from PRIDE)Dataset title: Functional effects of sweeteners on ex vivo human gut microbiomePossible reference: Sun, Z. et al. (2022) Comprehensive Assessment of Functional Effects of Commonly Used Sugar Substitute Sweeteners on Ex Vivo Human Gut Microbiome., Microbiol Spectr, PMID 35695565
PXD030445 Dataset with its publication pending (from PRIDE)Dataset title: Phospho-docking protein 14-3-3 regulates microtubule-associated proteins in oocytes including the chromosomal passenger Borealin.Possible reference: Repton, C. et al. (2022) The phospho-docking protein 14-3-3 regulates microtubule-associated proteins in oocytes including the chromosomal passenger Borealin., PLoS Genet, PMID 35666772
PXD030442 no publication (from MassIVE)Dataset title: Oligosarcomas, IDH-mutant are distinct and aggressivePossible reference: Suwala, AK. et al. (2022) Oligosarcomas, IDH-mutant are distinct and aggressive., Acta Neuropathol, PMID 34967922
PXD030434 Dataset with its publication pending (from iProX)Dataset title: Comprehensive Comparison of Sample Preparation workflow for Large Scaled Proteome IdentificationPossible reference: Karayel, O. et al. (2020) DIA-based systems biology approach unveils E3 ubiquitin ligase-dependent responses to a metabolic shift., Proc Natl Acad Sci U S A, PMID 33288721
PXD030429 Dataset with its publication pending (from PRIDE)Dataset title: MiniTurbo-based interactomics of two plasma membrane-localized SNARE proteins in Marchantia polymorphaPossible reference: Melkonian, K. et al. (2022) miniTurbo-based interactomics of two plasma membrane-localized SNARE proteins in Marchantia polymorpha., New Phytol, PMID 35396742
PXD030427 Dataset with its publication pending (from PRIDE)Dataset title: TEFM variants impair mitochondrial transcription elongation causing childhood-onset neurological diseasePossible reference: Van Haute, L. et al. (2023) TEFM variants impair mitochondrial transcription causing childhood-onset neurological disease., Nat Commun, PMID 36823193
PXD030424 Dataset with its publication pending (from PRIDE)Dataset title: Phosphoproteomic analysis of breast cancer-derived extracellular vesicles reveals disease-specific phosphorylated enzymesPossible reference: Minic, Z. et al. (2022) Phosphoproteomic Analysis of Breast Cancer-Derived Small Extracellular Vesicles Reveals Disease-Specific Phosphorylated Enzymes., Biomedicines, PMID 35203617
PXD030422 Dataset with its publication pending (from PRIDE)Dataset title: Inflammatory fibroblasts mediate resistance to neoadjuvant therapy in rectal cancerPossible reference: Nicolas, AM. et al. (2022) Inflammatory fibroblasts mediate resistance to neoadjuvant therapy in rectal cancer., Cancer Cell, PMID 35120600
PXD030407 Dataset with its publication pending (from PRIDE)Dataset title: Proteomics and secretome characterisation of a senescence-like cell state upon CDK4/6 inhibitionPossible reference: Beykou, M. et al. (2022) Proteomic characterisation of triple negative breast cancer cells following CDK4/6 inhibition., Sci Data, PMID 35817775
PXD030393 Dataset with its publication pending (from PRIDE)Dataset title: Proteome adaptations of the organohalide-respiring Desulfitobacterium hafniense to fermentative and various respiratory metabolismsPossible reference: Willemin, MS. et al. (2023) Proteome adaptations of the organohalide-respiring Desulfitobacterium hafniense strain DCB-2 to various energy metabolisms., Front Microbiol, PMID 36733918
PXD030390 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic Signature for Detection of High Grade Ovarian Cancer in germline BRCA mutation carriersPossible reference: Bahar-Shany, K. et al. (2023) Proteomic signature for detection of high-grade ovarian cancer in germline BRCA mutation carriers., Int J Cancer, PMID 36214786
PXD030381 Dataset with its publication pending (from PRIDE)Dataset title: Mechanism-based traps enable protease and hydrolase substrate discoveryPossible reference: Tang, S. et al. (2022) Mechanism-based traps enable protease and hydrolase substrate discovery., Nature, PMID 35173328
PXD030367 Dataset with its publication pending (from PanoramaPublic)Dataset title: Preserving the phosphoproteome of clinical biopsies using a quick freeze collection devicePossible reference: Kennedy, JJ. et al. (2022) Preserving the Phosphoproteome of Clinical Biopsies Using a Quick-Freeze Collection Device., Biopreserv Biobank, PMID 36301140
PXD030363 Dataset with its publication pending (from PRIDE)Dataset title: SMNDC1 links chromatin remodeling and splicing to regulate pancreatic hormone expressionPossible reference: Casteels, T. et al. (2022) SMNDC1 links chromatin remodeling and splicing to regulate pancreatic hormone expression., Cell Rep, PMID 36044849
PXD030362 Dataset with its publication pending (from PRIDE)Dataset title: SMNDC1 links chromatin remodeling and splicing to regulate pancreatic hormone expressionPossible reference: Casteels, T. et al. (2022) SMNDC1 links chromatin remodeling and splicing to regulate pancreatic hormone expression., Cell Rep, PMID 36044849
PXD030361 Dataset with its publication pending (from PRIDE)Dataset title: SMNDC1 links chromatin remodeling and splicing to regulate pancreatic hormone expressionPossible reference: Casteels, T. et al. (2022) SMNDC1 links chromatin remodeling and splicing to regulate pancreatic hormone expression., Cell Rep, PMID 36044849
PXD030348 Dataset with its publication pending (from PRIDE)Dataset title: A proteomics analysis of 5xFAD mouse brain regions reveals the lysosome-associated protein Arl8b as a candidate biomarker for Alzheimers diseasePossible reference: Boeddrich, A. et al. (2023) A proteomics analysis of 5xFAD mouse brain regions reveals the lysosome-associated protein Arl8b as a candidate biomarker for Alzheimer's disease., Genome Med, PMID 37468900
PXD030337 Dataset with its publication pending (from PRIDE)Dataset title: Migration of Acanthamoeba through Legionella biofilms is regulated by bacterial quorum sensing, effectors and the flagellumPossible reference: Hochstrasser, R. et al. (2022) Migration of Acanthamoeba through Legionella biofilms is regulated by the bacterial Lqs-LvbR network, effector proteins and the flagellum., Environ Microbiol, PMID 35415862
PXD030336 Dataset with its publication pending (from PRIDE)Dataset title: The nitrobenzoxadiazole derivative NBDHEX behaves as Plasmodium falciparum gametocyte selective inhibitor with malaria parasite transmission blocking activityPossible reference: Siciliano, G. et al. (2022) The Nitrobenzoxadiazole Derivative NBDHEX Behaves as Plasmodium falciparum Gametocyte Selective Inhibitor with Malaria Parasite Transmission Blocking Activity., Pharmaceuticals (Basel), PMID 35215282
PXD030334 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic Analysis of Human Conjunctival Cells and Tears Collected with Schirmer Strips Using TimsTOF ProPossible reference: Akkurt Arslan, M. et al. (2021) Proteomic Analysis of Tears and Conjunctival Cells Collected with Schirmer Strips Using timsTOF Pro: Preanalytical Considerations., Metabolites, PMID 35050124
PXD030324 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic response of Neoporphyra haitanensis to dehydration-rehydration cyclesPossible reference: Chen, H. et al. (2022) Insights into the Ancient Adaptation to Intertidal Environments by Red Algae Based on a Genomic and Multiomics Investigation of Neoporphyra haitanensis., Mol Biol Evol, PMID 34730826
PXD030312 Dataset with its publication pending (from PRIDE)Dataset title: Visualization of early ribosome assembly in actionPossible reference: Qin, B. et al. (2023) Cryo-EM captures early ribosome assembly in action., Nat Commun, PMID 36797249
PXD030301 Dataset with its publication pending (from PRIDE)Dataset title: Temporal resolution of gene derepression and proteome changes upon PROTAC-mediated degradation of BCL11A protein in erythroid cellsPossible reference: Mehta, S. et al. (2022) Temporal resolution of gene derepression and proteome changes upon PROTAC-mediated degradation of BCL11A protein in erythroid cells., Cell Chem Biol, PMID 35839780
PXD030299 Dataset with its publication pending (from PRIDE)Dataset title: Integrative structure models of the α-Synuclein dimer conformationsPossible reference: Sluchanko, NN. et al. (2017) Moonlighting chaperone-like activity of the universal regulatory 14-3-3 proteins., FEBS J, PMID 27973707
PXD030287 Dataset with its publication pending (from PRIDE)Dataset title: Macaca mulatta serum exosomes MSPossible reference: Vucetic, A. et al. (2023) Extracellular vesicle storm during the course of Ebola virus infection in primates., Front Cell Infect Microbiol, PMID 38035334
PXD030283 Dataset with its publication pending (from PRIDE)Dataset title: Potential Role of Lysine Acetylation in Antibiotic Resistance of Escherichia coliPossible reference: Dash, A. et al. (2021) Protein Acetyltransferases Mediate Bacterial Adaptation to a Diverse Environment., J Bacteriol, PMID 34251868
PXD030266 Dataset with its publication pending (from PRIDE)Dataset title: Depletion of the RNA-binding protein PURA triggers changes in posttranscriptional gene regulation and loss of P-bodiesPossible reference: Molitor, L. et al. (2023) Depletion of the RNA-binding protein PURA triggers changes in posttranscriptional gene regulation and loss of P-bodies., Nucleic Acids Res, PMID 36651277
PXD030265 Dataset with its publication pending (from PRIDE)Dataset title: Multi-omics analyses demonstrate a critical role for EHMT1 methyltransferase in transcriptional repression during oogenesisPossible reference: Demond, H. et al. (2023) Multi-omics analyses demonstrate a critical role for EHMT1 methyltransferase in transcriptional repression during oogenesis., Genome Res, PMID 36690445
PXD030260 Dataset with its publication pending (from PRIDE)Dataset title: Plasma proteomic, human Ebola virus diseasePossible reference: Eisfeld, AJ. et al. (2017) Multi-platform 'Omics Analysis of Human Ebola Virus Disease Pathogenesis., Cell Host Microbe, PMID 29154144
PXD030249 Dataset with its publication pending (from PRIDE)Dataset title: The Plasmodium falciparum Nuclear Protein Phosphatase NIF4 is Required for Efficient Merozoite Invasion and Regulates Artemisinin SensitivityPossible reference: Zhu, X. et al. (2022) The Plasmodium falciparum Nuclear Protein Phosphatase NIF4 Is Required for Efficient Merozoite Invasion and Regulates Artemisinin Sensitivity., mBio, PMID 35938722
PXD030246 Dataset with its publication pending (from PRIDE)Dataset title: Mitochondrial E3 ubiquitin ligase MARCHF5 controls BAK function independently of BH3-only proteinsPossible reference: Huang, AS. et al. (2023) Mitochondrial E3 ubiquitin ligase MARCHF5 controls BAK apoptotic activity independently of BH3-only proteins., Cell Death Differ, PMID 36171332
PXD030242 Dataset with its publication pending (from jPOST)Dataset title: Phosphorylation of CAD1, PLDdelta, NDT1, RPM1 proteins induced resistance in tomatoes infected by Ralstonia solanacearum Possible reference: Nounurai, P. et al. (2022) Phosphorylation of CAD1, PLDdelta, NDT1, RPM1 Proteins Induce Resistance in Tomatoes Infected by Ralstonia solanacearum., Plants (Basel), PMID 35336608
PXD030227 Dataset with its publication pending (from iProX)Dataset title: Sheep muscle proteome sequencingPossible reference: Chen, Z. et al. (2018) Z-band and M-band titin splicing and regulation by RNA binding motif 20 in striated muscles., J Cell Biochem, PMID 30133019
PXD030220 Dataset with its publication pending (from iProX)Dataset title: An Integrative Proteome-Based Pharmacologic Characterization and Therapeutic Strategy Exploration of SAHA in Solid MalignanciesPossible reference: Liu, Q. et al. (2022) An Integrative Proteome-Based Pharmacologic Characterization and Therapeutic Strategy Exploration of SAHA in Solid Malignancies., J Proteome Res, PMID 35172096
PXD030210 Dataset with its publication pending (from PRIDE)Dataset title: Integrated analysis of early transcriptomic and proteomic alterations in mouse models of ALS/FTD identify early metabolic adaptions with similarities to mitochondrial dysfunction disordersPossible reference: Matveeva, A. et al. (2024) Integrated analysis of transcriptomic and proteomic alterations in mouse models of ALS/FTD identify early metabolic adaptions with similarities to mitochondrial dysfunction disorders., Amyotroph Lateral Scler Frontotemporal Degener, PMID 37779364
PXD030206 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic response of SK-MEL-2 cells to polymyxin BPossible reference: Zhang, C. et al. (2022) Proteomic Response Revealed Signaling Pathways Involving in the Mechanism of Polymyxin B-Induced Melanogenesis., Microbiol Spectr, PMID 35377227
PXD030201 no publication (from MassIVE)Dataset title: Oxidation of whey proteins during thermal treatment characterized by a site-specific LC-MS/MS-based proteomic approachPossible reference: Li, C. et al. (2022) Oxidation of Whey Proteins during Thermal Treatment Characterized by a Site-Specific LC-MS/MS-Based Proteomic Approach., J Agric Food Chem, PMID 35380828
PXD030190 Dataset with its publication pending (from PRIDE)Dataset title: Succinylome and acetylome analyses of Staphylococcus aureusSuccinylome and acetylome analyses of Staphylococcus aureusPossible reference: Tan, L. et al. (2022) Identification of Lysine Succinylome and Acetylome in the Vancomycin-Intermediate Staphylococcus aureus XN108., Microbiol Spectr, PMID 36374118
PXD030188 Stefano Doccini*, Maria Marchese, Federica Morani, Nicola Gammaldi, Serena Mero, Francesco Pezzini, Rabah Soliymani, Melissa Santi, Giovanni Signore, Asahi Ogi, Silvia Rocchiccioli, Katja M. Kanninen, Alessandro Simonati, Maciej M. Lalowski*, Filippo M. S (from MassIVE)Dataset title: Lysosomal proteomics links disturbances in lipid homeostasis and sphingolipid metabolism to CLN5 disease.Possible reference: Doccini, S. et al. (2022) Lysosomal Proteomics Links Disturbances in Lipid Homeostasis and Sphingolipid Metabolism to CLN5 Disease., Cells, PMID 35681535
PXD030177 no publication (from MassIVE)Dataset title: Lung proteome of the AAV-DTR/DT mouse model of acute epithelial lung injuryPossible reference: Griesser, E. et al. (2022) Characterization of a flexible AAV-DTR/DT mouse model of acute epithelial lung injury., Am J Physiol Lung Cell Mol Physiol, PMID 35762632
PXD030176 Dataset with its publication pending (from jPOST)Dataset title: Shotgun proteomics (label-free quantitation) of Pyrodinium bahamensePossible reference: Subong, BJJ. et al. (2021) Biochemical Mapping of Pyrodinium bahamense Unveils Molecular Underpinnings behind Organismal Processes., Int J Mol Sci, PMID 34948131
PXD030167 Dataset with its publication pending (from PRIDE)Dataset title: Surgical trauma in mice modifies the content of circulating extracellular vesiclesPossible reference: Mkrtchian, S. et al. (2021) Surgical Trauma in Mice Modifies the Content of Circulating Extracellular Vesicles., Front Immunol, PMID 35116043
PXD030142 Dataset with its publication pending (from PRIDE)Dataset title: Single-cell transcriptomic and proteomic analysis of Parkinson’s disease brainsPossible reference: Eninger, T. et al. (2022) Signatures of glial activity can be detected in the CSF proteome., Proc Natl Acad Sci U S A, PMID 35666874
PXD030134 Dataset with its publication pending (from PRIDE)Dataset title: RNase L activating 2′-5′ oligoadenlyates bind ABCF1, -3 and Decr-1Possible reference: Govande, AA. et al. (2023) RNase L-activating 2'-5' oligoadenylates bind ABCF1, ABCF3 and Decr-1., J Gen Virol, PMID 37676257
PXD030131 Dataset with its publication pending (from PRIDE)Dataset title: Global analysis of lysine 2-hydroxyisobutyrylation during Fusarium graminearum infection in maizePossible reference: Zhang, K. et al. (2022) Global analysis of lysine 2-hydroxyisobutyrylation during Fusarium graminearum infection in maize., Front Plant Sci, PMID 36186065
PXD030130 Dataset with its publication pending (from PRIDE)Dataset title: Age-related differences in structure and function of nasal epithelial cultures from healthy children and elderly peoplePossible reference: Balázs, A. et al. (2022) Age-Related Differences in Structure and Function of Nasal Epithelial Cultures From Healthy Children and Elderly People., Front Immunol, PMID 35296085
PXD030128 Dataset with its publication pending (from PRIDE)Dataset title: Label-Free Proteomics-based analysis of peripheral nerve injury induced by Japanese encephalitis virusPossible reference: Wang, X. et al. (2022) Label-free proteomics-based analysis of peripheral nerve injury induced by Japanese encephalitis virus., J Proteomics, PMID 35605915
PXD030092 Dataset with its publication pending (from PRIDE)Dataset title: The proteome of irradiated glioma stem cells and of their extracellular vesiclesPossible reference: Pan, J. et al. (2022) Extracellular vesicles derived from glioblastoma promote proliferation and migration of neural progenitor cells via PI3K-Akt pathway., Cell Commun Signal, PMID 35022057
PXD030091 Dataset with its publication pending (from PRIDE)Dataset title: The E3 ubiquitin ligase adaptor cereblon targets the C-terminal cyclic imide degronPossible reference: Ichikawa, S. et al. (2024) The cyclimids: Degron-inspired cereblon binders for targeted protein degradation., Cell Chem Biol, PMID 38320555
PXD030076 Dataset with its publication pending (from PRIDE)Dataset title: Distinct ribosome states trigger diverse mRNA quality control pathwaysPossible reference: Garshott, DM. et al. (2021) iRQC, a surveillance pathway for 40S ribosomal quality control during mRNA translation initiation., Cell Rep, PMID 34469731
PXD030072 Dataset with its publication pending (from PRIDE)Dataset title: Time-resolved proximity labeling of protein networks associated with ligand-activated EGFRPossible reference: Perez Verdaguer, M. et al. (2022) Time-resolved proximity labeling of protein networks associated with ligand-activated EGFR., Cell Rep, PMID 35705039
PXD030062 Dataset with its publication pending (from PRIDE)Dataset title: Mitochondrial phosphoproteomes are functionally specialized across tissuesPossible reference: Hardesty, J. et al. (2022) Hepatic Protein and Phosphoprotein Signatures of Alcohol-Associated Cirrhosis and Hepatitis., Am J Pathol, PMID 35490715
PXD030061 Dataset with its publication pending (from PRIDE)Dataset title: AP-BNPAGE YAP1 complexes separationPossible reference: Uliana, F. et al. (2023) Phosphorylation-linked complex profiling identifies assemblies required for Hippo signal integration., Mol Syst Biol, PMID 36896621
PXD030059 Dataset with its publication pending (from PRIDE)Dataset title: Cell-Lineage Guided Mass Spectrometry Proteomics in the Developing (Frog) EmbryoPossible reference: Baxi, AB. et al. (2018) Proteomic Characterization of the Neural Ectoderm Fated Cell Clones in the Xenopus laevis Embryo by High-Resolution Mass Spectrometry., ACS Chem Neurosci, PMID 29578674
PXD030057 Dataset with its publication pending (from PRIDE)Dataset title: A positive feedback loop mediates crosstalk between calcium, cyclic nucleotide and lipid signaling in Toxoplasma gondii.Possible reference: Nofal, SD. et al. (2022) A positive feedback loop mediates crosstalk between calcium, cyclic nucleotide and lipid signalling in calcium-induced Toxoplasma gondii egress., PLoS Pathog, PMID 36265000
PXD030056 Dataset with its publication pending (from PRIDE)Dataset title: Polymer type specific microplastic effects on Dreissena bugensis’ proteome, antioxidant activity and behaviorPossible reference: Brehm, J. et al. (2022) In-depth characterization revealed polymer type and chemical content specific effects of microplastic on Dreissena bugensis., J Hazard Mater, PMID 35728319
PXD030053 no publication (from MassIVE)Dataset title: Deciphering the Physiological Response of Escherichia coli Under High ATP Demand Possible reference: Boecker, S. et al. (2021) Deciphering the physiological response of Escherichia coli under high ATP demand., Mol Syst Biol, PMID 34928538
PXD030049 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic analysis on the protective effect of eriodictyol on benzo(a)pyrene-induced Caco-2 cytotoxicityPossible reference: Wang, C. et al. (2022) Proteomic Analysis of the Protective Effect of Eriodictyol on Benzo(a)pyrene-Induced Caco-2 Cytotoxicity., Front Nutr, PMID 35308267
PXD030030 Dataset with its publication pending (from iProX)Dataset title: Mass spectrometry experiments to detect mettl3 related proteins and modificationsPossible reference: Liu, K. et al. (2023) Short-chain fatty acid-butyric acid ameliorates granulosa cells inflammation through regulating METTL3-mediated N6-methyladenosine modification of FOSL2 in polycystic ovarian syndrome., Clin Epigenetics, PMID 37179374
PXD030012 Dataset with its publication pending (from PRIDE)Dataset title: Detection SARS-CoV-2 infection in mice by ATR-FTIRPossible reference: Kazmer, ST. et al. (2022) Pathophysiological Response to SARS-CoV-2 Infection Detected by Infrared Spectroscopy Enables Rapid and Robust Saliva Screening for COVID-19., Biomedicines, PMID 35203562
PXD029994 Dataset with its publication pending (from PRIDE)Dataset title: Comparative Phenotypic, Proteomic, and Phosphoproteomic Analysis Reveals Different Roles of Serine/Threonine Phosphatase and Kinase in the Growth, Cell Division, and Pathogenicity of Streptococcus suisPossible reference: Hu, Q. et al. (2021) Comparative Phenotypic, Proteomic, and Phosphoproteomic Analysis Reveals Different Roles of Serine/Threonine Phosphatase and Kinase in the Growth, Cell Division, and Pathogenicity of Streptococcus suis., Microorganisms, PMID 34946045
PXD029988 Dataset with its publication pending (from PRIDE)Dataset title: Subcellular proteomics of murine presomitic mesodermPossible reference: Müller, J. et al. (2014) O-fucosylation of the notch ligand mDLL1 by POFUT1 is dispensable for ligand function., PLoS One, PMID 24533113
PXD029964 Dataset with its publication pending (from PRIDE)Dataset title: Knockout of MITOGEN-ACTIVATED PROTEIN KINASE 3 causes barley root resistance against Fusarium graminearumPossible reference: Basheer, J. et al. (2022) Knockout of MITOGEN-ACTIVATED PROTEIN KINASE 3 causes barley root resistance against Fusarium graminearum., Plant Physiol, PMID 35993881
PXD029955 Dataset with its publication pending (from PRIDE)Dataset title: Reactivity-dependent profiling of RNA 5-methylcytidine dioxygenasesPossible reference: Arguello, AE. et al. (2022) Reactivity-dependent profiling of RNA 5-methylcytidine dioxygenases., Nat Commun, PMID 35853884
PXD029954 Dataset with its publication pending (from PRIDE)Dataset title: Altered Subgenomic RNA Abundance in SARS-CoV-2 B.1.1.7 InfectionsPossible reference: Parker, MD. et al. (2022) Altered subgenomic RNA abundance provides unique insight into SARS-CoV-2 B.1.1.7/Alpha variant infections., Commun Biol, PMID 35790808
PXD029942 Dataset with its publication pending (from PRIDE)Dataset title: Von Willebrand factor A1 domain affinity for GPIbα and stability are differentially regulated by its O-glycosylated N-linker and C-linkerPossible reference: Bonazza, K. et al. (2022) Von Willebrand factor A1 domain stability and affinity for GPIbα are differentially regulated by its O-glycosylated N- and C-linker., Elife, PMID 35532124
PXD029940 Dataset with its publication pending (from PRIDE)Dataset title: Sumoylation regulates protein cargo in Astrocyte-derived small extracellular vesiclesPossible reference: Fernandez, A. et al. (2024) Sumoylation in astrocytes induces changes in the proteome of the derived small extracellular vesicles which change protein synthesis and dendrite morphology in target neurons., Brain Res, PMID 37972846
PXD029902 Dataset with its publication pending (from PRIDE)Dataset title: A fully automated FAIMS-DIA mass spectrometry-based proteomic pipeline Possible reference: Reilly, L. et al. (2023) A fully automated FAIMS-DIA mass spectrometry-based proteomic pipeline., Cell Rep Methods, PMID 37729920
PXD029899 Dataset with its publication pending (from PRIDE)Dataset title: Polypyrimidine Tract Binding Proteins PTBP1 and PTBP2 Interact with Distinct Proteins Under Splicing ConditionsPossible reference: Pina, JM. et al. (2022) Polypyrimidine tract binding proteins PTBP1 and PTBP2 interact with distinct proteins under splicing conditions., PLoS One, PMID 35113929
PXD029882 Dataset with its publication pending (from PRIDE)Dataset title: The oncogenic fusion protein DNAJB1-PRKACA can be specifically targeted by peptide-based immunotherapy in fibrolamellar hepatocellular carcinomaPossible reference: Bauer, J. et al. (2022) The oncogenic fusion protein DNAJB1-PRKACA can be specifically targeted by peptide-based immunotherapy in fibrolamellar hepatocellular carcinoma., Nat Commun, PMID 36302754
PXD029876 no publication (from MassIVE)Dataset title: Amyloid fibrils in disease FTLD-TDP are composed of TMEM106B, rather than TDP-43Possible reference: Chang, A. et al. (2022) Homotypic fibrillization of TMEM106B across diverse neurodegenerative diseases., Cell, PMID 35247328
PXD029875 Dataset with its publication pending (from iProX)Dataset title: Proteome of honeybee larva infected by VarroaPossible reference: Parker, R. et al. (2012) Correlation of proteome-wide changes with social immunity behaviors provides insight into resistance to the parasitic mite, Varroa destructor, in the honey bee (Apis mellifera)., Genome Biol, PMID 23021491
PXD029866 Dataset with its publication pending (from PRIDE)Dataset title: A Global Phosphorylation Atlas of Proteins within Pathological Site of Rotator Cuff TendinopathyPossible reference: Wang, Y. et al. (2021) A Global Phosphorylation Atlas of Proteins Within Pathological Site of Rotator Cuff Tendinopathy., Front Mol Biosci, PMID 35242811
PXD029857 Dataset with its publication pending (from iProX)Dataset title: Immunoglobulin-Associated Proteome (IgAP) in Patients of Acute Myocardial Infarction and Chronic Coronary SyndromesPossible reference: Tan, M. et al. (2022) Quantitative proteomics reveals differential immunoglobulin-associated proteome (IgAP) in patients of acute myocardial infarction and chronic coronary syndromes., J Proteomics, PMID 34890869
PXD029856 Dataset with its publication pending (from iProX)Dataset title: Discovery of Metal-binding Proteins by METAL-TPP with TPENPossible reference: Zeng, X. et al. (2024) Discovery of metal-binding proteins by thermal proteome profiling., Nat Chem Biol, PMID 38409364
PXD029844 Dataset with its publication pending (from PRIDE)Dataset title: Preserving the phosphoproteome of clinical biopsies using a quick freeze collection devicePossible reference: Kennedy, JJ. et al. (2022) Preserving the Phosphoproteome of Clinical Biopsies Using a Quick-Freeze Collection Device., Biopreserv Biobank, PMID 36301140
PXD029828 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic signatures of antimicrobial resistance in Yersinia pestis and Francisella tularensisPossible reference: Deatherage Kaiser, BL. et al. (2022) Proteomic Signatures of Antimicrobial Resistance in Yersinia pestis and Francisella tularensis., Front Med (Lausanne), PMID 35223919
PXD029825 Dataset with its publication pending (from PRIDE)Dataset title: Sex differences in the role of protein sumoylation in the amygdala during fear memory formationPossible reference: Gustin, A. et al. (2022) Protein SUMOylation is a sex-specific regulator of fear memory formation in the amygdala., Behav Brain Res, PMID 35597476
PXD029824 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic consequences of TDA1 deficiency in Saccharomyces cerevisiaePossible reference: Müller, H. et al. (2022) Proteomic consequences of TDA1 deficiency in Saccharomyces cerevisiae: Protein kinase Tda1 is essential for Hxk1 and Hxk2 serine 15 phosphorylation., Sci Rep, PMID 36302925
PXD029814 Dataset with its publication pending (from jPOST)Dataset title: Water droplet-in-oil digestion method for single-cell proteomicsPossible reference: Masuda, T. et al. (2022) Water Droplet-in-Oil Digestion Method for Single-Cell Proteomics., Anal Chem, PMID 35817413
PXD029806 Dataset with its publication pending (from PRIDE)Dataset title: Effects of neck-arm restraint suspension of beef carcasses on meat quality and proteome of different muscles during post-mortem agingPossible reference: Cai, W. et al. (2021) Effects of Neck-Arm Restraint Suspension of Beef Carcasses on Meat Quality and Proteome of Different Muscles During Post-mortem Aging., Front Nutr, PMID 34993220
PXD029800 no publication (from MassIVE)Dataset title: Identification of Endogenous Peptides in MALDI-TOF-MS based COVID-19 diagnosticsPossible reference: Tsai, H. et al. (2022) Identification of Endogenous Peptides in Nasal Swab Transport Media used in MALDI-TOF-MS Based COVID-19 Screening., ACS Omega, PMID 35600141
PXD029793 Dataset with its publication pending (from PRIDE)Dataset title: Serum proteomic profile of asthmatic patients after 6 months of Benralizumab and Mepolizumab treatmentPossible reference: Landi, C. et al. (2021) Differential redox proteomic profiles of serum from severe asthma patients after one month of benralizumab and mepolizumab treatment., Pulm Pharmacol Ther, PMID 34303823
PXD029792 Dataset with its publication pending (from PRIDE)Dataset title: Improved identification of proteoforms using FAIMS with internal CV stepping in top-down proteomicsPossible reference: Kaulich, PT. et al. (2022) Improved Identification of Proteoforms in Top-Down Proteomics Using FAIMS with Internal CV Stepping., Anal Chem, PMID 35172570
PXD029789 Dataset with its publication pending (from jPOST)Dataset title: CSF exosome proteome of Alzheimer's diseasePossible reference: Street, JM. et al. (2012) Identification and proteomic profiling of exosomes in human cerebrospinal fluid., J Transl Med, PMID 22221959
PXD029780 Dataset with its publication pending (from PRIDE)Dataset title: A Sensitive and Controlled Data-Independent Acquisition Method for Proteomic Analysis of Cell TherapiesPossible reference: Lombard-Banek, C. et al. (2022) A Sensitive and Controlled Data-Independent Acquisition Method for Proteomic Analysis of Cell Therapies., J Proteome Res, PMID 35404046
PXD029772 Dataset with its publication pending (from iProX)Dataset title: Iodoacetyl tandem mass tag (iodoTMT)-based redox proteomics of Arabidopsis thalianaPossible reference: Nietzel, T. et al. (2020) Redox-mediated kick-start of mitochondrial energy metabolism drives resource-efficient seed germination., Proc Natl Acad Sci U S A, PMID 31871212
PXD029769 no publication (from MassIVE)Dataset title: SCP4-STK35/PDIK1L complex is a dual phospho-catalytic signaling dependency in acute myeloid leukemia Possible reference: Polyanskaya, SA. et al. (2022) SCP4-STK35/PDIK1L complex is a dual phospho-catalytic signaling dependency in acute myeloid leukemia., Cell Rep, PMID 35021089
PXD029767 Dataset with its publication pending (from jPOST)Dataset title: Exosome of plasma and CSF from AD patientsPossible reference: Yang, Y. et al. (2015) Cerebrospinal Fluid Particles in Alzheimer Disease and Parkinson Disease., J Neuropathol Exp Neurol, PMID 26083568
PXD029758 Dataset with its publication pending (from iProX)Dataset title: Myocardial proteomic analysis of pulmonary arterial hypertension in ratPossible reference: Wong, CM. et al. (2012) Iron chelation inhibits the development of pulmonary vascular remodeling., Free Radic Biol Med, PMID 22974762
PXD029757 no publication (from MassIVE)Dataset title: Proteomic changes associated with predator induced morphological defenses in Olympia oystersPossible reference: Evans, TG. et al. (2022) Proteomic changes associated with predator-induced morphological defences in oysters., Mol Ecol, PMID 35754098
PXD029756 no publication (from MassIVE)Dataset title: Protein Posttranslational Signatures Identified in COVID-19 Patient PlasmaPossible reference: Vedula, P. et al. (2022) Protein Posttranslational Signatures Identified in COVID-19 Patient Plasma., Front Cell Dev Biol, PMID 35223838
PXD029754 Dataset with its publication pending (from PRIDE)Dataset title: Solution study of a type I polyketide synthase from Mycobacterium tuberculosis: pks13, the condensase of mycolic acidsPossible reference: Bon, C. et al. (2022) Solution structure of the type I polyketide synthase Pks13 from Mycobacterium tuberculosis., BMC Biol, PMID 35729566
PXD029746 Dataset with its publication pending (from PRIDE)Dataset title: The human disease gene TMEM251 is essential for lysosomal transport and viral infectionPossible reference: Richards, CM. et al. (2022) The human disease gene LYSET is essential for lysosomal enzyme transport and viral infection., Science, PMID 36074821
PXD029739 Dataset with its publication pending (from iProX)Dataset title: Phytophthora capsici mycelia proteomePossible reference: He, L. et al. (2022) iTRAQ proteomic analysis of the inhibitory effect of 1,6-O,O-diacetylbritannilactone on the plant pathogenic oomycete Phytophthora capsici., Pestic Biochem Physiol, PMID 35715063
PXD029737 Dataset with its publication pending (from PRIDE)Dataset title: Paracrine Interleukin 6 induces cerebral remodeling at early stages after unilateral common carotid artery occlusion in micePossible reference: Kuffner, MTC. et al. (2021) Paracrine Interleukin 6 Induces Cerebral Remodeling at Early Stages After Unilateral Common Carotid Artery Occlusion in Mice., Front Cardiovasc Med, PMID 35155612
PXD029728 Dataset with its publication pending (from PRIDE)Dataset title: Characterization of biofilm associated protein (Bap) in Staphylococcus xylosusPossible reference: Schiffer, C. et al. (2019) Bap and Cell Surface Hydrophobicity Are Important Factors in Staphylococcus xylosus Biofilm Formation., Front Microbiol, PMID 31293539
PXD029725 Dataset with its publication pending (from PRIDE)Dataset title: Oncogenic Mutations of KRAS Modulate Its Turnover by the CUL3/LZTR1 E3 ligase ComplexPossible reference: Damianou, A. et al. (2024) Oncogenic mutations of KRAS modulate its turnover by the CUL3/LZTR1 E3 ligase complex., Life Sci Alliance, PMID 38453365
PXD029700 Dataset with its publication pending (from PRIDE)Dataset title: Improving statistical certainty of glycosylation similarity between influenza A virus variants using data-independent acquisition mass spectrometryPossible reference: Chang, D. et al. (2022) Improving Statistical Certainty of Glycosylation Similarity between Influenza A Virus Variants Using Data-Independent Acquisition Mass Spectrometry., Mol Cell Proteomics, PMID 36103992
PXD029691 Dataset with its publication pending (from PRIDE)Dataset title: Reprogramming of sorghum proteome in response to sugarcane aphid infestationPossible reference: Grover, S. et al. (2022) Reprogramming of sorghum proteome in response to sugarcane aphid infestation., Plant Sci, PMID 35643611
PXD029683 Dataset with its publication pending (from PRIDE)Dataset title: Proteome dataset of peripheral blood mononuclear cells in postpartum dairy cows supplemented with different sources of omega-3 fatty acidsPossible reference: Kra, G. et al. (2022) Proteome dataset of peripheral blood mononuclear cells in postpartum dairy cows supplemented with different sources of omega-3 fatty acids., Data Brief, PMID 35036486
PXD029682 Dataset with its publication pending (from PRIDE)Dataset title: CDC-like Kinase 4 Deficiency Contributes to Pathological Cardiac Hypertrophy by Modulating NEXN PhosphorylationPossible reference: Huang, J. et al. (2022) CDC-like kinase 4 deficiency contributes to pathological cardiac hypertrophy by modulating NEXN phosphorylation., Nat Commun, PMID 35907876
PXD029653 Dataset with its publication pending (from PRIDE)Dataset title: A Co-culture System Reveals a Cross-talk between Alveolar Epithelium and Pulmonary Microvascular Endothelium during SARS-CoV-2 InfectionPossible reference: Wang, P. et al. (2020) A cross-talk between epithelium and endothelium mediates human alveolar-capillary injury during SARS-CoV-2 infection., Cell Death Dis, PMID 33293527
PXD029646 Dataset with its publication pending (from PRIDE)Dataset title: MCU interactome from mitochondria proteomePossible reference: Delgado de la Herran, H. et al. (2024) Systematic mapping of mitochondrial calcium uniporter channel (MCUC)-mediated calcium signaling networks., EMBO J, PMID 39261663
PXD029635 Dataset with its publication pending (from PRIDE)Dataset title: Proteomics investigations of potential protein biomarkers in sera of rabbits infected with Schistosoma japonicumPossible reference: Bi, NN. et al. (2021) Proteomics Investigations of Potential Protein Biomarkers in Sera of Rabbits Infected With Schistosoma japonicum., Front Cell Infect Microbiol, PMID 35004354
PXD029620 Dataset with its publication pending (from PRIDE)Dataset title: Colon cancer, cell line, overexpressed CCDC12Possible reference: Du, F. et al. (2022) CCDC12 promotes tumor development and invasion through the Snail pathway in colon adenocarcinoma., Cell Death Dis, PMID 35217636
PXD029616 Dataset with its publication pending (from PRIDE)Dataset title: N-Acetylation of secreted proteins is widespread in Apicomplexa and independent of acetyl-CoA transporter AT1Possible reference: Nyonda, MA. et al. (2022) N-acetylation of secreted proteins in Apicomplexa is widespread and is independent of the ER acetyl-CoA transporter AT1., J Cell Sci, PMID 35621049
PXD029596 Dataset with its publication pending (from PRIDE)Dataset title: Thymine DNA glycosylase (TDG) regulates cell cycle–driven p53 transcriptional control in pluripotent cellsPossible reference: Aranda, S. et al. (2023) Thymine DNA glycosylase regulates cell-cycle-driven p53 transcriptional control in pluripotent cells., Mol Cell, PMID 37506700
PXD029582 no publication (from MassIVE)Dataset title: Metaproteomics reveals enzymatic strategies deployed by anaerobic microbiomes to maintain lignocellulose deconstruction at high solidsPossible reference: Chirania, P. et al. (2022) Metaproteomics reveals enzymatic strategies deployed by anaerobic microbiomes to maintain lignocellulose deconstruction at high solids., Nat Commun, PMID 35790765
PXD029580 Dataset with its publication pending (from PRIDE)Dataset title: Molecular determinants of the crosstalk between endosomal microautophagy and chaperone-mediated autophagyPossible reference: Krause, GJ. et al. (2023) Molecular determinants of the crosstalk between endosomal microautophagy and chaperone-mediated autophagy., Cell Rep, PMID 38060380
PXD029573 Dataset with its publication pending (from PRIDE)Dataset title: Role of Nse1 subunit of SMC5/6 complex as a ubiquitin ligasePossible reference: Kolesar, P. et al. (2022) Role of Nse1 Subunit of SMC5/6 Complex as a Ubiquitin Ligase., Cells, PMID 35011726
PXD029566 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic Analysis Suggests Altered Mitochondrial Metabolic Profile Associated with Diabetic CardiomyopathyPossible reference: Gomes, KP. et al. (2022) Proteomic Analysis Suggests Altered Mitochondrial Metabolic Profile Associated With Diabetic Cardiomyopathy., Front Cardiovasc Med, PMID 35310970
PXD029557 Dataset with its publication pending (from jPOST)Dataset title: Dietary germinated paddy rice and stocking density affect egg performance, serum biochemical properties, and proteomic and transcriptomic response of laying hens exposed to chronic heat stressPossible reference: Incharoen, T. et al. (2021) Dietary Germinated Paddy Rice and Stocking Density Affect Egg Performance, Serum Biochemical Properties, and Proteomic and Transcriptomic Response of Laying Hens Exposed to Chronic Heat Stress., Proteomes, PMID 34941813
PXD029538 Dataset with its publication pending (from PRIDE)Dataset title: Neuralized-like protein 4 (Neurl4) mediates ADP-ribosylation of mitochondrial proteinsPossible reference: Cardamone, MD. et al. (2022) Neuralized-like protein 4 (NEURL4) mediates ADP-ribosylation of mitochondrial proteins., J Cell Biol, PMID 35157000
PXD029537 Dataset with its publication pending (from PRIDE)Dataset title: Effects of SHetA2 on SiHa and C-33 A human cervical cancer cell linesPossible reference: Rai, R. et al. (2024) Manipulation of metabolic responses enhances SHetA2 efficacy without toxicity in cervical cancer cell lines and xenografts., Gynecol Oncol, PMID 38052108
PXD029535 Dataset with its publication pending (from PRIDE)Dataset title: tRNA Biogenesis and Specific Aminoacyl-tRNA Synthetases Regulate Senescence Stability Under the Control of mTORPossible reference: Guillon, J. et al. (2021) tRNA biogenesis and specific aminoacyl-tRNA synthetases regulate senescence stability under the control of mTOR., PLoS Genet, PMID 34928935
PXD029531 no publication (from MassIVE)Dataset title: Increasing the throughput of sensitive proteomics by plexDIAPossible reference: Derks, J. et al. (2023) Increasing the throughput of sensitive proteomics by plexDIA., Nat Biotechnol, PMID 35835881
PXD029518 Dataset with its publication pending (from PRIDE)Dataset title: Crosstalk between Mutant p53 and p62/SQSTM1 Augments Cancer Cell Migration by Promoting the Degradation of Cell Adhesion ProteinsPossible reference: Mukherjee, S. et al. (2022) Cross-talk between mutant p53 and p62/SQSTM1 augments cancer cell migration by promoting the degradation of cell adhesion proteins., Proc Natl Acad Sci U S A, PMID 35439056
PXD029511 Dataset with its publication pending (from PRIDE)Dataset title: Comparative proteomic analysis reveals the different hepatotoxic mechanisms of human hepatocytes exposed to silver nanoparticlesPossible reference: Wong, TY. et al. (2023) Comparative proteomic analysis reveals the different hepatotoxic mechanisms of human hepatocytes exposed to silver nanoparticles., J Hazard Mater, PMID 37055998
PXD029501 Dataset with its publication pending (from PRIDE)Dataset title: Transcriptomic and proteomic retinal pigment epithelium signatures of age-related macular degeneration.Possible reference: Senabouth, A. et al. (2022) Transcriptomic and proteomic retinal pigment epithelium signatures of age-related macular degeneration., Nat Commun, PMID 35882847
PXD029500 Dataset with its publication pending (from PRIDE)Dataset title: SP3-enabled rapid and high coverage chemoproteomic identification of redox-sensitive cysteinesPossible reference: Desai, HS. et al. (2022) SP3-Enabled Rapid and High Coverage Chemoproteomic Identification of Cell-State-Dependent Redox-Sensitive Cysteines., Mol Cell Proteomics, PMID 35219905
PXD029496 Dataset with its publication pending (from PRIDE)Dataset title: A novel C-terminal DxRSDxE motif in ceramide synthases involved in dimer formationPossible reference: Kim, JL. et al. (2022) A novel C-terminal DxRSDxE motif in ceramide synthases involved in dimer formation., J Biol Chem, PMID 34942147
PXD029489 Dataset with its publication pending (from PRIDE)Dataset title: RNF31 inhibition sensitizes tumors to bystander killing by innate and adaptive immune cellsPossible reference: Zhang, Z. et al. (2022) RNF31 inhibition sensitizes tumors to bystander killing by innate and adaptive immune cells., Cell Rep Med, PMID 35688159
PXD029480 Dataset with its publication pending (from PRIDE)Dataset title: Site-specific protein modification by 3-n-butylphthalide in primary hepatocytes: covalent protein adducts diminished by glutathione and N-acetylcysteinePossible reference: Xue, Y. et al. (2021) Site-specific protein modification by 3-n-butylphthalide in primary hepatocytes: Covalent protein adducts diminished by glutathione and N-acetylcysteine., Life Sci, PMID 34762904
PXD029463 Dataset with its publication pending (from PRIDE)Dataset title: PIM1 controls GBP1 activity to limit self-damage and guard against pathogen infectionPossible reference: Fisch, D. et al. (2023) PIM1 controls GBP1 activity to limit self-damage and to guard against pathogen infection., Science, PMID 37797010
PXD029447 no publication (from MassIVE)Dataset title: TIMSFolding allows the use of ion mobility enhanced spectral libraries Possible reference: Shen, T. et al. (2023) The unknown lipids project: harmonized methods improve compound identification and data reproducibility in an inter-laboratory untargeted lipidomics study., bioRxiv, PMID 36778509
PXD029431 Dataset with its publication pending (from PRIDE)Dataset title: Enrichment and Proteomic Identification of Cryptosporidium parvum Oocyst WallPossible reference: Wang, L. et al. (2022) Enrichment and proteomic identification of Cryptosporidium parvum oocyst wall., Parasit Vectors, PMID 36151578
PXD029411 no publication (from MassIVE)Dataset title: Label free proteomic and complementary metabolomic analysis of leaves of the resurrection plant Xerophyta schlechteri during dehydrationPossible reference: Gabier, H. et al. (2021) A Label-Free Proteomic and Complementary Metabolomic Analysis of Leaves of the Resurrection Plant Xerophytaschlechteri during Dehydration., Life (Basel), PMID 34833116
PXD029396 Dataset with its publication pending (from PRIDE)Dataset title: Actinobacillus pleuropneumoniae serotype 2 exoproteome LF-LC-MS/MSPossible reference: Stancheva, SG. et al. (2022) Proteomic and immunoproteomic insights into the exoproteome of Actinobacillus pleuropneumoniae, the causative agent of porcine pleuropneumonia., Microb Pathog, PMID 36087692
PXD029374 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic profiling and alteration in Tuta absoluta upon infection with entomopathogenic fungi, Beauveria bassiana and Purpureocillium lilacinumPossible reference: Bali, GK. et al. (2022) An insight in proteome profiling of Tuta absoluta larvae after entomopathogenic fungal infection., Sci Data, PMID 35986033
PXD029368 Dataset with its publication pending (from PRIDE)Dataset title: Rat parathyroid glands LC-MS/MSPossible reference: Åženkal-Turhan, S. et al. (2024) Induced Pluripotent Stem Cell-Derived Parathyroid Organoids Resemble Parathyroid Morphology and Function., Adv Sci (Weinh), PMID 39331961
PXD029343 Dataset with its publication pending (from PRIDE)Dataset title: Alternative polyadenylation factor CPSF6 regulates temperature compensation of the mammalian circadian clockPossible reference: Schmal, C. et al. (2023) Alternative polyadenylation factor CPSF6 regulates temperature compensation of the mammalian circadian clock., PLoS Biol, PMID 37379316
PXD029321 Dataset with its publication pending (from PRIDE)Dataset title: Anti-SARS-CoV-2 antibodies elicited by COVID-19mRNA vaccine exhibits a unique glycosylation patternPossible reference: Farkash, I. et al. (2021) Anti-SARS-CoV-2 antibodies elicited by COVID-19 mRNA vaccine exhibit a unique glycosylation pattern., Cell Rep, PMID 34883043
PXD029320 Dataset with its publication pending (from PRIDE)Dataset title: Real-Time Search Assisted Acquisition on a Tribrid Mass Spectrometer Improves Coverage in Multiplexed Single-Cell ProteomicsPossible reference: Furtwängler, B. et al. (2022) Real-Time Search-Assisted Acquisition on a Tribrid Mass Spectrometer Improves Coverage in Multiplexed Single-Cell Proteomics., Mol Cell Proteomics, PMID 35219906
PXD029319 Dataset with its publication pending (from PRIDE)Dataset title: Putative methylomirabilis lanthanidiphila surface layer proteinPossible reference: Gambelli, L. et al. (2021) The Polygonal Cell Shape and Surface Protein Layer of Anaerobic Methane-Oxidizing Methylomirabilis lanthanidiphila Bacteria., Front Microbiol, PMID 34925275
PXD029303 Dataset with its publication pending (from jPOST)Dataset title: eIF4A1-bound 48S complex in HEK293T cellsPossible reference: Babaylova, E. et al. (2019) Tetrapeptide 60-63 of human ribosomal protein uS3 is crucial for translation initiation., Biochim Biophys Acta Gene Regul Mech, PMID 31356988
PXD029302 Dataset with its publication pending (from jPOST)Dataset title: eIF4A1-bound 48S complex in HEK293T cellsPossible reference: Babaylova, E. et al. (2019) Tetrapeptide 60-63 of human ribosomal protein uS3 is crucial for translation initiation., Biochim Biophys Acta Gene Regul Mech, PMID 31356988
PXD029301 Dataset with its publication pending (from jPOST)Dataset title: eIF4A1-bound 48S complex in HEK293T cellsPossible reference: Babaylova, E. et al. (2019) Tetrapeptide 60-63 of human ribosomal protein uS3 is crucial for translation initiation., Biochim Biophys Acta Gene Regul Mech, PMID 31356988
PXD029291 Dataset with its publication pending (from PRIDE)Dataset title: N1-methylpseudouridine found within COVID-19 mRNA vaccines produces faithful protein productsPossible reference: Kim, KQ. et al. (2022) N1-methylpseudouridine found within COVID-19 mRNA vaccines produces faithful protein products., Cell Rep, PMID 35988540
PXD029285 Dataset with its publication pending (from PRIDE)Dataset title: Comparative proteomic profiling identifies reciprocal expression of mitochondrial proteins between white and grey matter lesions from multiple sclerosis brainsPossible reference: Rai, NK. et al. (2021) Comparative Proteomic Profiling Identifies Reciprocal Expression of Mitochondrial Proteins Between White and Gray Matter Lesions From Multiple Sclerosis Brains., Front Neurol, PMID 35002930
PXD029278 Andrew Frando, Vishant Boradia, Marina Gritsenko, Michael-Claude Beltejar, Le Day, David R. Sherman, Shuyi Ma, Jon M. Jacobs, Christoph Grundner. The Mycobacterium tuberculosis protein O-phosphorylation landscape. bioRxiv. Epub 2022 Feb 17. doi: https://d (from MassIVE)Dataset title: The Mycobacterium tuberculosis O-phosphorylation landscapePossible reference: Frando, A. et al. (2023) The Mycobacterium tuberculosis protein O-phosphorylation landscape., Nat Microbiol, PMID 36690861
PXD029270 Dataset with its publication pending (from PRIDE)Dataset title: Cysteine 253 of UCP1 regulates energy expenditure and adipose tissue inflammationPossible reference: Mills, EL. et al. (2022) Cysteine 253 of UCP1 regulates energy expenditure and sex-dependent adipose tissue inflammation., Cell Metab, PMID 34861155
PXD029269 Dataset with its publication pending (from PRIDE)Dataset title: Boost-DiLeu: Enhanced Isobaric N,N-Dimethyl Leucine Tagging Strategy for Comprehensive Quantitative Glycoproteomic AnalysisPossible reference: Wang, D. et al. (2022) Boost-DiLeu: Enhanced Isobaric N,N-Dimethyl Leucine Tagging Strategy for a Comprehensive Quantitative Glycoproteomic Analysis., Anal Chem, PMID 35960654
PXD029267 Dataset with its publication pending (from PRIDE)Dataset title: The spread of herds and horses into the AltaiPossible reference: Ventresca Miller, AR. et al. (2022) The spread of herds and horses into the Altai: How livestock and dairying drove social complexity in Mongolia., PLoS One, PMID 35544454
PXD029257 Dataset with its publication pending (from PRIDE)Dataset title: Astrocyte and neuron subcompartment proteomes reveal distinct cellular and molecular mechanisms of OCDPossible reference: Soto, JS. et al. (2023) Astrocyte-neuron subproteomes and obsessive-compulsive disorder mechanisms., Nature, PMID 37046092
PXD029241 Dataset with its publication pending (from PRIDE)Dataset title: Changes in the proteome and secretome of rat liver sinusoidal endothelial cells during early primary culture and effects of dexamethasonePossible reference: Li, R. et al. (2022) Changes in the proteome and secretome of rat liver sinusoidal endothelial cells during early primary culture and effects of dexamethasone., PLoS One, PMID 36054185
PXD029227 Dataset with its publication pending (from PRIDE)Dataset title: Characterising the RNA-binding protein atlas of the mammalian brain uncovers RBM5 misregulation in mouse models of Huntington’s disease Possible reference: Mullari, M. et al. (2023) Characterising the RNA-binding protein atlas of the mammalian brain uncovers RBM5 misregulation in mouse models of Huntington's disease., Nat Commun, PMID 37468457
PXD029226 Dataset with its publication pending (from PRIDE)Dataset title: Liver mitochondria-associated ER membrane proteomics for studying the effects of ZiBuPiYin recipe on Zucker diabetic fatty rats after chronic psychological stressPossible reference: Xu, H. et al. (2022) Liver mitochondria-associated endoplasmic reticulum membrane proteomics for studying the effects of ZiBuPiYin recipe on Zucker diabetic fatty rats after chronic psychological stress., Front Cell Dev Biol, PMID 36407109
PXD029205 Dataset with its publication pending (from PRIDE)Dataset title: Quantitative proteomic dataset of the moss Physcomitrium patens SMG1 KO mutant linePossible reference: Mamaeva, A. et al. (2022) Quantitative proteomic dataset of the moss Physcomitrium patens SMG1 KO mutant line., Data Brief, PMID 34977295
PXD029202 Dataset with its publication pending (from PRIDE)Dataset title: Using Quantitative Proteomic Assessments and their Association with Long Term Healing OutcomesPossible reference: Chen, J. et al. (2022) Complement factor D as a predictor of Achilles tendon healing and long-term patient outcomes., FASEB J, PMID 35596679
PXD029195 Dataset with its publication pending (from PRIDE)Dataset title: Integrative multi-omic profiling of adult mouse brain endothelial cells and potential implications in Alzheimer’s diseasePossible reference: Yu, M. et al. (2023) Integrative multi-omic profiling of adult mouse brain endothelial cells and potential implications in Alzheimer's disease., Cell Rep, PMID 37925638
PXD029193 Dataset with its publication pending (from PRIDE)Dataset title: Identification of antimicrobial peptides isolated from the skin mucus of African Catfish, Clarias gariepinus (Burchell, 1822)Possible reference: Okella, H. et al. (2021) Identification of Antimicrobial Peptides Isolated From the Skin Mucus of African Catfish, Clarias gariepinus (Burchell, 1822)., Front Microbiol, PMID 34987491
PXD029187 Dataset with its publication pending (from PRIDE)Dataset title: TMT-based quantitative proteomic analysis reveals the physiological regulatory networks of embryo dehydration protection in lotus (Nelumbo nucifera)Possible reference: Zhang, D. et al. (2021) TMT-Based Quantitative Proteomic Analysis Reveals the Physiological Regulatory Networks of Embryo Dehydration Protection in Lotus (Nelumbo nucifera)., Front Plant Sci, PMID 34975978
PXD029177 Dataset with its publication pending (from iProX)Dataset title: Metaproteomics of sludge in anaerobic acidificationPossible reference: Kohrs, F. et al. (2017) Proteotyping of laboratory-scale biogas plants reveals multiple steady-states in community composition., Anaerobe, PMID 28189830
PXD029170 no publication (from MassIVE)Dataset title: Site-specific characterization of heat-induced disulfide rearrangement in beta-lactoglobulin by liquid chromatography-mass spectrometryPossible reference: Li, C. et al. (2022) Site-Specific Characterization of Heat-Induced Disulfide Rearrangement in Beta-Lactoglobulin by Liquid Chromatography-Mass Spectrometry., J Agric Food Chem, PMID 35025507
PXD029169 Dataset with its publication pending (from jPOST)Dataset title: Reversible flower opening regulated by CPK16-dependent phosphorylation and activation of aquaporin PIP2;2 in GentianaPossible reference: Nemoto, K. et al. (2022) Calcium-dependent protein kinase 16 phosphorylates and activates the aquaporin PIP2;2 to regulate reversible flower opening in Gentiana scabra., Plant Cell, PMID 35441691
PXD029163 Dataset with its publication pending (from PRIDE)Dataset title: SPHINGOSINE 1-PHOSPHATE MEDIATES ADIPONECTIN RECEPTOR SIGNALING ESSENTIAL FOR LIPID HOMEOSTASIS AND EMBRYOGENESISPossible reference: Ruiz, M. et al. (2022) Sphingosine 1-phosphate mediates adiponectin receptor signaling essential for lipid homeostasis and embryogenesis., Nat Commun, PMID 36418331
PXD029156 Dataset with its publication pending (from PRIDE)Dataset title: CLUH controls astrin-1 expression to couple mitochondrial metabolism to cell cycle progressionPossible reference: Schatton, D. et al. (2022) CLUH controls astrin-1 expression to couple mitochondrial metabolism to cell cycle progression., Elife, PMID 35559794
PXD029152 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic analysis of Trichomonas vaginalis phagolysosomes, lysosomal targeting, and unconventional secretion of cysteine peptidasesPossible reference: Zimmann, N. et al. (2022) Proteomic Analysis of Trichomonas vaginalis Phagolysosome, Lysosomal Targeting, and Unconventional Secretion of Cysteine Peptidases., Mol Cell Proteomics, PMID 34763061
PXD029145 Dataset with its publication pending (from PRIDE)Dataset title: CLUH controls astrin-1 expression to couple mitochondrial metabolism to cell cycle progressionPossible reference: Schatton, D. et al. (2022) CLUH controls astrin-1 expression to couple mitochondrial metabolism to cell cycle progression., Elife, PMID 35559794
PXD029144 Dataset with its publication pending (from PRIDE)Dataset title: Proteomics and immunoproteomics of Anoplocephala perfoliataPossible reference: Hautala, K. et al. (2022) Label-free quantitative proteomics and immunoblotting identifies immunoreactive and other excretory-secretory (E/S) proteins of Anoplocephala perfoliata., Front Immunol, PMID 36466892
PXD029143 Dataset with its publication pending (from PRIDE)Dataset title: Noninvasive Nasopharyngeal Proteomics Identify Coagulation Abnormalities in SARS-CoV-2Possible reference: Ayass, MA. et al. (2022) Noninvasive nasopharyngeal proteomics of COVID-19 patient identify abnormalities related to complement and coagulation cascade and mucosal immune system., PLoS One, PMID 36094909
PXD029142 Dataset with its publication pending (from PRIDE)Dataset title: CLUH controls astrin-1 expression to couple mitochondrial metabolism to cell cycle progressionPossible reference: Schatton, D. et al. (2022) CLUH controls astrin-1 expression to couple mitochondrial metabolism to cell cycle progression., Elife, PMID 35559794
PXD029136 Dataset with its publication pending (from PRIDE)Dataset title: Role of the E3 Ubiquitin-ligase Hakai in intestinal inflammation and cancer bowel diseasePossible reference: Roca-Lema, D. et al. (2022) Role of the E3 ubiquitin-ligase Hakai in intestinal inflammation and cancer bowel disease., Sci Rep, PMID 36266428
PXD029130 Dataset with its publication pending (from PRIDE)Dataset title: Comparative proteomic analysis for revealing the advantage mechanisms of Salt-tolerant tomato (Solanum lycopersicum)Possible reference: Wang, Q. et al. (2022) Comparative proteomic analysis for revealing the advantage mechanisms of salt-tolerant tomato (Solanum lycoperscium)., PeerJ, PMID 35251781
PXD029124 no publication (from MassIVE)Dataset title: Dietary relevant concentrations of BDE-47, -99, -209 and their mixture differently affect HepG2 transcriptomic and proteomic profiles.Possible reference: Casella, M. et al. (2022) BDE-47, -99, -209 and Their Ternary Mixture Disrupt Glucose and Lipid Metabolism of Hepg2 Cells at Dietary Relevant Concentrations: Mechanistic Insight through Integrated Transcriptomics and Proteomics Analysis., Int J Mol Sci, PMID 36430946
PXD029122 Dataset with its publication pending (from PRIDE)Dataset title: Modular bottom-up proteomic sample preparation for high-throughput applicationsPossible reference: Toby, TK. et al. (2019) A comprehensive pipeline for translational top-down proteomics from a single blood draw., Nat Protoc, PMID 30518910
PXD029120 Dataset with its publication pending (from PRIDE)Dataset title: G3BP1 inhibits Cul3SPOP to amplify AR signaling and promote prostate cancerPossible reference: Mukhopadhyay, C. et al. (2021) G3BP1 inhibits Cul3SPOP to amplify AR signaling and promote prostate cancer., Nat Commun, PMID 34795264
PXD029105 Dataset with its publication pending (from PRIDE)Dataset title: Identification of new amniotic fluid prognostic biomarkers of congenital cytomegalovirus infection severityPossible reference: Desveaux, C. et al. (2016) Identification of Symptomatic Fetuses Infected with Cytomegalovirus Using Amniotic Fluid Peptide Biomarkers., PLoS Pathog, PMID 26808779
PXD029080 Dataset with its publication pending (from PRIDE)Dataset title: Eggshell-matrix protein proteome for squamatesPossible reference: Xie, HX. et al. (2022) The eggshell-matrix protein gene OC-17 is functionally lost in the viviparous Chinese crocodile lizard., J Evol Biol, PMID 36129910
PXD029076 Dataset with its publication pending (from PRIDE)Dataset title: Antioxidant, Immunomodulatory and Potential Anticancer Capacity of Polysaccharides (Glucans) from Euglena gracilis G.A. KlebsPossible reference: Casas-Arrojo, V. et al. (2022) Antioxidant, Immunomodulatory and Potential Anticancer Capacity of Polysaccharides (Glucans) from Euglena gracilis G.A. Klebs., Pharmaceuticals (Basel), PMID 36355551
PXD029068 Dataset with its publication pending (from iProX)Dataset title: Epicatechin rescues memory deficits by inducing autophagy in tauopathyPossible reference: Wu, Y. et al. (2025) (-)-Epicatechin Rescues Memory Deficits by Activation of Autophagy in a Mouse Model of Tauopathies., MedComm (2020), PMID 40135197
PXD029048 Dataset with its publication pending (from PRIDE)Dataset title: Hydrodynamic conditions affect the proteomic profile of marine biofilms formed by filamentous cyanobacteriumPossible reference: Romeu, MJ. et al. (2022) Hydrodynamic conditions affect the proteomic profile of marine biofilms formed by filamentous cyanobacterium., NPJ Biofilms Microbiomes, PMID 36253388
PXD029047 Dataset with its publication pending (from PRIDE)Dataset title: Multilayered Regulation of Autophagy by the Atg1 Kinase Orchestrates Spatial and Temporal Control of Autophagosome FormationPossible reference: Schreiber, A. et al. (2021) Multilayered regulation of autophagy by the Atg1 kinase orchestrates spatial and temporal control of autophagosome formation., Mol Cell, PMID 34798055
PXD029035 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic analysis of residues from experimental ceramicsPossible reference: Rafalska, KT. et al. (2024) A Comparison of White and Yellow Seminal Plasma Phosphoproteomes Obtained from Turkey (Meleagris gallopavo) Semen., Int J Mol Sci, PMID 39337428
PXD029029 Dataset with its publication pending (from PRIDE)Dataset title: Citrullinated epitopes identified on tumor MHC class II by peptide elution stimulate both regulatory and Th1 responses and require careful selection for optimal tumor therapyPossible reference: Symonds, P. et al. (2021) Citrullinated Epitopes Identified on Tumour MHC Class II by Peptide Elution Stimulate Both Regulatory and Th1 Responses and Require Careful Selection for Optimal Anti-Tumour Responses., Front Immunol, PMID 34858415
PXD029025 Xiaowei Gao ,Bhagyashree N. Swarge, Henk L. Dekker, Winfried Roseboom, Stanley Brul, and Gertjan Kramer. The Membrane Proteome of Spores and Vegetative Cells of the Food-Borne Pathogen Bacillus cereus. Int. J. Mol. Sci. 2021, 22(22), 12475. (from MassIVE)Dataset title: The membrane proteome of spores and vegetative cells of the food-borne pathogen Bacillus cereus.Possible reference: Gao, X. et al. (2021) The Membrane Proteome of Spores and Vegetative Cells of the Food-Borne Pathogen Bacillus cereus., Int J Mol Sci, PMID 34830357
PXD029009 Dataset with its publication pending (from PRIDE)Dataset title: A proteomic survival predictor for COVID-19 patients in intensive carePossible reference: Meizlish, ML. et al. (2020) A neutrophil activation signature predicts critical illness and mortality in COVID-19., medRxiv, PMID 32908988
PXD029008 Dataset with its publication pending (from PRIDE)Dataset title: C. elegans TFIIH subunit GTF-2H5/TTDA is a non-essential transcription factor indispensable for DNA repairC. elegans TFIIH subunit GTF-2H5/TTDA is a non-essential transcription factor indispensable for DNA repair.Possible reference: Thijssen, KL. et al. (2021) C. elegans TFIIH subunit GTF-2H5/TTDA is a non-essential transcription factor indispensable for DNA repair., Commun Biol, PMID 34824371
PXD029002 no publication (from MassIVE)Dataset title: Cowen_Myers_Chemogenomics_2021Possible reference: Fu, C. et al. (2021) Leveraging machine learning essentiality predictions and chemogenomic interactions to identify antifungal targets., Nat Commun, PMID 34764269
PXD028999 Dataset with its publication pending (from iProX)Dataset title: Function and Molecular Mechanism of N-Terminal Acetylation in AutophagyPossible reference: Ng, F. et al. (2013) Sirtuins' modulation of autophagy., J Cell Physiol, PMID 23696314
PXD028995 no publication (from MassIVE)Dataset title: Expanding the biological role of lipo-chitooligosaccharides and chitooligosaccharides in Laccaria bicolor growth and developmentPossible reference: Villalobos Solis, MI. et al. (2022) Expanding the Biological Role of Lipo-Chitooligosaccharides and Chitooligosaccharides in Laccaria bicolor Growth and Development., Front Fungal Biol, PMID 37746234
PXD028987 Dataset with its publication pending (from PRIDE)Dataset title: Hypoxia-induced aquaporins and regulation of redox homeostasis by a trans-plasma membrane electron transport system in maize rootsPossible reference: Hofmann, A. et al. (2022) Hypoxia-Induced Aquaporins and Regulation of Redox Homeostasis by a Trans-Plasma Membrane Electron Transport System in Maize Roots., Antioxidants (Basel), PMID 35624700
PXD028974 Dataset with its publication pending (from PRIDE)Dataset title: A longer isoform of Stim1 is a negative SOCE regulator but increases cAMP modulated NFAT signalingPossible reference: Knapp, ML. et al. (2022) A longer isoform of Stim1 is a negative SOCE regulator but increases cAMP-modulated NFAT signaling., EMBO Rep, PMID 34942054
PXD028973 no publication (from MassIVE)Dataset title: The F-box protein Bard (CG14317) targets the Smaug RNA-binding protein for destruction during the Drosophila maternal-to-zygotic transitionPossible reference: Cao, WX. et al. (2022) The F-box protein Bard (CG14317) targets the Smaug RNA-binding protein for destruction during the Drosophila maternal-to-zygotic transition., Genetics, PMID 34757425
PXD028963 Dataset with its publication pending (from PRIDE)Dataset title: Identification of long-lived proteins in the mitochondria reveals increased stability of the electron transport chainPossible reference: Krishna, S. et al. (2021) Identification of long-lived proteins in the mitochondria reveals increased stability of the electron transport chain., Dev Cell, PMID 34715012
PXD028945 Dataset with its publication pending (from PRIDE)Dataset title: GFI1 tethers the NuRD complex to open and transcriptionally active chromatin in myeloid progenitorsPossible reference: Helness, A. et al. (2021) GFI1 tethers the NuRD complex to open and transcriptionally active chromatin in myeloid progenitors., Commun Biol, PMID 34857890
PXD028940 Dataset with its publication pending (from PRIDE)Dataset title: Connections between exoproteome heterogeneity and virulence in the oral pathogen Aggregatibacter actinomycetemcomitansPossible reference: Fu, Y. et al. (2022) Connections between Exoproteome Heterogeneity and Virulence in the Oral Pathogen Aggregatibacter actinomycetemcomitans., mSystems, PMID 35695491
PXD028937 Dataset with its publication pending (from PRIDE)Dataset title: Pfcerli2, a duplicated gene in the malaria parasite Plasmodium falciparum essential for invasion of erythrocytes as revealed by phylogenetic and cell biological analysis.Possible reference: Liffner, B. et al. (2022) Cell biological analysis reveals an essential role for Pfcerli2 in erythrocyte invasion by malaria parasites., Commun Biol, PMID 35140336
PXD028933 Dataset with its publication pending (from PRIDE)Dataset title: Competitive binding of E3 ligases TRIM26 and WWP2 controls SOX2 in glioblastomaPossible reference: Mahlokozera, T. et al. (2021) Competitive binding of E3 ligases TRIM26 and WWP2 controls SOX2 in glioblastoma., Nat Commun, PMID 34732716
PXD028907 Dataset with its publication pending (from PRIDE)Dataset title: β-1,3-glucan recognition by Acanthamoeba castellanii as a putative mechanism of amoeba-fungal interactionsPossible reference: Ferreira, MdS. et al. (2024) β-1,3-Glucan recognition by Acanthamoeba castellanii as a putative mechanism of amoeba-fungal interactions., Appl Environ Microbiol, PMID 38259076
PXD028904 Dataset with its publication pending (from PRIDE)Dataset title: New molecular insights into atrial fibrillation due to obscurin Ig58/59 deletionPossible reference: Grogan, A. et al. (2023) Alterations in cytoskeletal and Ca2+ cycling regulators in atria lacking the obscurin Ig58/59 module., Front Cardiovasc Med, PMID 37304957
PXD028901 Dataset with its publication pending (from PRIDE)Dataset title: MSLibrarian: Optimized predicted spectral libraries for DIA proteomicsPossible reference: Isaksson, M. et al. (2022) MSLibrarian: Optimized Predicted Spectral Libraries for Data-Independent Acquisition Proteomics., J Proteome Res, PMID 35042333
PXD028898 Dataset with its publication pending (from PRIDE)Dataset title: Multi-omics analysis of microglial extracellular vesicles from human Alzheimer’s Disease brain reveals disease-associated signaturesPossible reference: Cohn, W. et al. (2021) Multi-Omics Analysis of Microglial Extracellular Vesicles From Human Alzheimer's Disease Brain Tissue Reveals Disease-Associated Signatures., Front Pharmacol, PMID 34925024
PXD028886 Dataset with its publication pending (from PRIDE)Dataset title: Paeonia lactiflora extract increase the muscle function via downregulation of high mobility group box 1 and NF-kB signaling in mdx mice, an animal model of Duchenne muscular dystrophyPossible reference: Sim, I. et al. (2022) Paeonia lactiflora extract improves the muscle function of mdx mice, an animal model of Duchenne muscular dystrophy, via downregulating the high mobility group box 1 protein., J Ethnopharmacol, PMID 35149132
PXD028880 Dataset with its publication pending (from PRIDE)Dataset title: Extending the range of SLIM-labeling applications: from human cell lines in culture to Caenorhabditis elegans whole-organism labelingPossible reference: Lignieres, L. et al. (2023) Extending the Range of SLIM-Labeling Applications: From Human Cell Lines in Culture to Caenorhabditis elegans Whole-Organism Labeling., J Proteome Res, PMID 36748112
PXD028879 Dataset with its publication pending (from PRIDE)Dataset title: Split-TurboID with Bre5 and Rps2 in Saccharomyces cerevisiaePossible reference: Schmitt, K. et al. (2021) A Multi-Perspective Proximity View on the Dynamic Head Region of the Ribosomal 40S Subunit., Int J Mol Sci, PMID 34769086
PXD028864 Dataset with its publication pending (from PRIDE)Dataset title: Quantitative structural proteomics unveils the conformational changes of proteins under ER stressPossible reference: Yin, K. et al. (2022) Quantitative Structural Proteomics Unveils the Conformational Changes of Proteins under the Endoplasmic Reticulum Stress., Anal Chem, PMID 36108266
PXD028853 Dataset with its publication pending (from PRIDE)Dataset title: Enhancing Cysteine Chemoproteomic Coverage Through Systematic Assessment of Click Chemistry Product FragmentationPossible reference: Yan, T. et al. (2022) Enhancing Cysteine Chemoproteomic Coverage through Systematic Assessment of Click Chemistry Product Fragmentation., Anal Chem, PMID 35195394
PXD028849 Dataset with its publication pending (from PRIDE)Dataset title: Shotgun proteomic profiling of dormant, 'non-culturable' Mycobacterium tuberculosisPossible reference: Nikitushkin, V. et al. (2022) Shotgun proteomic profiling of dormant, 'non-culturable' Mycobacterium tuberculosis., PLoS One, PMID 35944020
PXD028846 Dataset with its publication pending (from PRIDE)Dataset title: Shared and specific functions of Arfs 1-5 at the golgi revealed by systematic knockoutsPossible reference: Pennauer, M. et al. (2022) Shared and specific functions of Arfs 1-5 at the Golgi revealed by systematic knockouts., J Cell Biol, PMID 34749397
PXD028833 Dataset with its publication pending (from PRIDE)Dataset title: Proteome of the wood decay fungus Fomitopsis pinicola is altered by substratePossible reference: Sabat, G. et al. (2022) Proteome of the Wood Decay Fungus Fomitopsis pinicola Is Altered by Substrate., Microbiol Resour Announc, PMID 35969048
PXD028825 Dataset with its publication pending (from PRIDE)Dataset title: Citrullination of glucokinase is linked to autoimmune diabetesPossible reference: Yang, ML. et al. (2022) Citrullination of glucokinase is linked to autoimmune diabetes., Nat Commun, PMID 35388005
PXD028824 Dataset with its publication pending (from PRIDE)Dataset title: DOT1L regulates pericentromeric heterochromatinPossible reference: Ooga, M. et al. (2013) Involvement of DOT1L in the remodeling of heterochromatin configuration during early preimplantation development in mice., Biol Reprod, PMID 24132959
PXD028804 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic identification of an endogenous synaptic SUMOylome in the developing rat brainPossible reference: Pronot, M. et al. (2021) Proteomic Identification of an Endogenous Synaptic SUMOylome in the Developing Rat Brain., Front Mol Neurosci, PMID 34887727
PXD028787 Dataset with its publication pending (from PRIDE)Dataset title: A global screening identifies chromatin-enriched RNA-binding proteins and the transcriptional regulatory activity of QKI5 during monocytic differentiation [RBP screening THP-1 cells]Possible reference: Ren, Y. et al. (2021) A global screening identifies chromatin-enriched RNA-binding proteins and the transcriptional regulatory activity of QKI5 during monocytic differentiation., Genome Biol, PMID 34649616
PXD028752 Dataset with its publication pending (from iProX)Dataset title: The database of Chinese CSF individual variationPossible reference: Guo, L. et al. (2019) A high-risk luminal A dominant breast cancer subtype with increased mobility., Breast Cancer Res Treat, PMID 30778902
PXD028747 Dataset with its publication pending (from jPOST)Dataset title: Proteomic response of Pediococcus pentosaceus M41 under different environmental stressesPossible reference: Baig, MA. et al. (2021) Potential Probiotic Pediococcus pentosaceus M41 Modulates Its Proteome Differentially for Tolerances Against Heat, Cold, Acid, and Bile Stresses., Front Microbiol, PMID 34721329
PXD028745 no publication (from MassIVE)Dataset title: Atg8ylation coordinates stress granule formation and mTOR inactivation in response to lysosomal damagePossible reference: Jia, J. et al. (2022) Stress granules and mTOR are regulated by membrane atg8ylation during lysosomal damage., J Cell Biol, PMID 36179369
PXD028736 Dataset with its publication pending (from PRIDE)Dataset title: Solvent Precipitation SP3 (SP4) enhances recovery for proteomics sample preparation without magnetic beadsPossible reference: Johnston, HE. et al. (2022) Solvent Precipitation SP3 (SP4) Enhances Recovery for Proteomics Sample Preparation without Magnetic Beads., Anal Chem, PMID 35848328
PXD028727 Dataset with its publication pending (from iProX)Dataset title: Deciphering the molecular mechanism of long non-coding RNA HIFA-AS1 regulating pancreatic cancer cellsPossible reference: Saraswat, SK. et al. (2024) Deciphering the oncogenic landscape: Unveiling the molecular machinery and clinical significance of LncRNA TMPO-AS1 in human cancers., Pathol Res Pract, PMID 38330619
PXD028713 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic and phosphoproteomic of C2C12 myogenesis and MAPK inhibitionPossible reference: Lee, H. et al. (2017) A Phosphoproteomic Screen Identifies a Guanine Nucleotide Exchange Factor for Rab3A Protein as a Mitogen-activated Protein (MAP) Kinase Phosphatase-5-regulated MAP Kinase Target in Interleukin 6 (IL-6) Secretion and Myogenesis., J Biol Chem, PMID 28096466
PXD028711 Dataset with its publication pending (from iProX)Dataset title: Versican Promotes Cardiomyocyte Proliferation and Heart RegenerationPossible reference: Feng, J. et al. (2024) Versican Promotes Cardiomyocyte Proliferation and Cardiac Repair., Circulation, PMID 37886839
PXD028709 Dataset with its publication pending (from PRIDE)Dataset title: Mapping the Melanoma Plasma Proteome (MPP) using Single-Shot Proteomics and Custom Protein DatabasesPossible reference: Almeida, N. et al. (2021) Mapping the Melanoma Plasma Proteome (MPP) Using Single-Shot Proteomics Interfaced with the WiMT Database., Cancers (Basel), PMID 34944842
PXD028704 Dataset with its publication pending (from PRIDE)Dataset title: Master mitotic kinases regulate viral genome delivery during papillomavirus cell entryPossible reference: Rizzato, M. et al. (2023) Master mitotic kinases regulate viral genome delivery during papillomavirus cell entry., Nat Commun, PMID 36683055
PXD028701 Dataset with its publication pending (from PRIDE)Dataset title: The nucleoporin Nup50 activates the Ran guanyl-nucleotide exchange factor RCC1 to promote NPC assembly at the end of mitosisPossible reference: Holzer, G. et al. (2021) The nucleoporin Nup50 activates the Ran guanine nucleotide exchange factor RCC1 to promote NPC assembly at the end of mitosis., EMBO J, PMID 34725842
PXD028698 Dataset with its publication pending (from PRIDE)Dataset title: Regulation of Plant Phototropic Growth by NPH3/RPT2-like Substrate Phosphorylation and 14-3-3 BindingPossible reference: Sullivan, S. et al. (2021) Regulation of plant phototropic growth by NPH3/RPT2-like substrate phosphorylation and 14-3-3 binding., Nat Commun, PMID 34675214
PXD028694 Dataset with its publication pending (from PRIDE)Dataset title: Proteome-wide screening for mitogen-activated protein kinase docking motifs and interactorsPossible reference: Shi, G. et al. (2023) Proteome-wide screening for mitogen-activated protein kinase docking motifs and interactors., Sci Signal, PMID 36626580
PXD028680 Dataset with its publication pending (from PRIDE)Dataset title: A20 and ABIN-1 cooperate in balancing CBM complex-triggered NF-kB signaling in activated T cellsPossible reference: Yin, H. et al. (2022) A20 and ABIN-1 cooperate in balancing CBM complex-triggered NF-κB signaling in activated T cells., Cell Mol Life Sci, PMID 35099607
PXD028668 Dataset with its publication pending (from PRIDE)Dataset title: A global screening identifies chromatin-enriched RNA-binding proteins and the transcriptional regulatory activity of QKI5 during monocytic differentiation [RBP screening K562 cells]Possible reference: Ren, Y. et al. (2021) A global screening identifies chromatin-enriched RNA-binding proteins and the transcriptional regulatory activity of QKI5 during monocytic differentiation., Genome Biol, PMID 34649616
PXD028666 Dataset with its publication pending (from PRIDE)Dataset title: Elucidation of the translation initiation factor interaction network of Haloferax volcanii reveals coupling of transcription and translation in haloarchaeaPossible reference: Schramm, F. et al. (2021) Elucidation of the Translation Initiation Factor Interaction Network of Haloferax volcanii Reveals Coupling of Transcription and Translation in Haloarchaea., Front Microbiol, PMID 34764944
PXD028665 Dataset with its publication pending (from PRIDE)Dataset title: FLI1 and FRA1 transcription factors drive the transcriptional regulatory networks characterizing muscle invasive bladder cancerPossible reference: Guneri-Sozeri, PY. et al. (2023) FLI1 and FRA1 transcription factors drive the transcriptional regulatory networks characterizing muscle invasive bladder cancer., Commun Biol, PMID 36805539
PXD028660 Dataset with its publication pending (from PRIDE)Dataset title: A global screening identifies chromatin-enriched RNA-binding proteins and the transcriptional regulatory activity of QKI5 during monocytic differentiation [RBP screening 293T cells]Possible reference: Ren, Y. et al. (2021) A global screening identifies chromatin-enriched RNA-binding proteins and the transcriptional regulatory activity of QKI5 during monocytic differentiation., Genome Biol, PMID 34649616
PXD028656 Dataset with its publication pending (from PRIDE)Dataset title: Mutant glucocerebrosidase impairs ï¡-synuclein degradation by blockade of chaperone-mediated autophagyPossible reference: Kuo, SH. et al. (2022) Mutant glucocerebrosidase impairs α-synuclein degradation by blockade of chaperone-mediated autophagy., Sci Adv, PMID 35138901
PXD028640 Dataset with its publication pending (from PRIDE)Dataset title: Comprehensive Phosphoproteomic Analysis of Nostoc flagelliforme in Response to Dehydration Provides Insights into Plant ROS Signaling TransductionPossible reference: Liang, W. et al. (2021) Comprehensive Phosphoproteomic Analysis of Nostoc flagelliforme in Response to Dehydration Provides Insights into Plant ROS Signaling Transduction., ACS Omega, PMID 34095650
PXD028629 no publication (from MassIVE)Dataset title: Northern elephant seal skeletal muscle, blubber, and plasma proteome responses to prolonged fastingPossible reference: Khudyakov, JI. et al. (2022) Changes in apolipoprotein abundance dominate proteome responses to prolonged fasting in elephant seals., J Exp Biol, PMID 35188212
PXD028621 Dataset with its publication pending (from jPOST)Dataset title: Protein lactylation induced by neural excitationPossible reference: Hagihara, H. et al. (2021) Protein lactylation induced by neural excitation., Cell Rep, PMID 34644564
PXD028618 Dataset with its publication pending (from PRIDE)Dataset title: Comparative proteomic analysis of HPV(+) oropharyngeal squamous cell carcinoma recurrencePossible reference: Ho, AS. et al. (2022) Comparative Proteomic Analysis of HPV(+) Oropharyngeal Squamous Cell Carcinoma Recurrence., J Proteome Res, PMID 34846153
PXD028613 Dataset with its publication pending (from PRIDE)Dataset title: Muc2-dependent microbial colonization of the jejunal mucus layer is diet sensitive and confers resistance to enteric pathogen infectionPossible reference: Birchenough, GMH. et al. (2023) Muc2-dependent microbial colonization of the jejunal mucus layer is diet sensitive and confers local resistance to enteric pathogen infection., Cell Rep, PMID 36753416
PXD028609 Dataset with its publication pending (from iProX)Dataset title: DRAK2 aggravates nonalcoholic fatty liver disease progression through SRSF6-associated RNA alternative splicingPossible reference: Li, Y. et al. (2021) DRAK2 aggravates nonalcoholic fatty liver disease progression through SRSF6-associated RNA alternative splicing., Cell Metab, PMID 34614409
PXD028607 Dataset with its publication pending (from PRIDE)Dataset title: Campylobacter hepaticus glycoproteome analysisPossible reference: McDonald, JB. et al. (2023) Characterisation of N-linked protein glycosylation in the bacterial pathogen Campylobacter hepaticus., Sci Rep, PMID 36604449
PXD028594 Dataset with its publication pending (from PRIDE)Dataset title: Radiotherapy changes the salivary proteome in head and neck cancer patients: evaluation before, during and after treatmentPossible reference: Ventura, TMO. et al. (2021) Is there difference in the comparative and quantitative salivary proteome between stimulated and unstimulated saliva in head and neck cancer patients treated by radiotherapy?, Oral Oncol, PMID 33985911
PXD028590 Dataset with its publication pending (from PRIDE)Dataset title: Amphiregulin mediates non-cell-autonomous effect of senescence on reprogrammingPossible reference: von Joest, M. et al. (2022) Amphiregulin mediates non-cell-autonomous effect of senescence on reprogramming., Cell Rep, PMID 35830812
PXD028583 Dataset with its publication pending (from PRIDE)Dataset title: Frequency of change determines effectiveness of microbial response strategies in sulfidic stream microbiomesPossible reference: Li, S. et al. (2023) Frequency of change determines effectiveness of microbial response strategies., ISME J, PMID 37723339
PXD028579 Dataset with its publication pending (from PRIDE)Dataset title: Cryo-EM structures of Gid12-bound GID E3 reveal steric blockade as a mechanism inhibiting substrate ubiquitylationPossible reference: Qiao, S. et al. (2022) Cryo-EM structures of Gid12-bound GID E3 reveal steric blockade as a mechanism inhibiting substrate ubiquitylation., Nat Commun, PMID 35650207
PXD028576 Dataset with its publication pending (from PRIDE)Dataset title: The Arabidopsis mature endosperm promotes seedling cuticle formation via release of sulfated peptidesPossible reference: De Giorgi, J. et al. (2021) The Arabidopsis mature endosperm promotes seedling cuticle formation via release of sulfated peptides., Dev Cell, PMID 34706263
PXD028561 Dataset with its publication pending (from PRIDE)Dataset title: Glucose dissociates DDX21 dimers to regulate mRNA splicing and promote epidermal differentiationPossible reference: Miao, W. et al. (2023) Glucose dissociates DDX21 dimers to regulate mRNA splicing and tissue differentiation., Cell, PMID 36608661
PXD028550 Dataset with its publication pending (from PRIDE)Dataset title: ProMetIS: deep phenotyping of mouse models by proteomics and metabolomicsPossible reference: Imbert, A. et al. (2021) ProMetIS, deep phenotyping of mouse models by combined proteomics and metabolomics analysis., Sci Data, PMID 34862403
PXD028544 Dataset with its publication pending (from PRIDE)Dataset title: Comparative proteomics demonstrates altered Metabolism pathways in cotrimoxazole-resistant and amikacin-resistant Klebsiella pneumoniae isolatesPossible reference: Shen, C. et al. (2021) Comparative Proteomics Demonstrates Altered Metabolism Pathways in Cotrimoxazole- Resistant and Amikacin-Resistant Klebsiella pneumoniae Isolates., Front Microbiol, PMID 34867912
PXD028543 Dataset with its publication pending (from PRIDE)Dataset title: Chlamydia trachomatis effector Dre1 interacts with dynactin to reposition host organelles during infection.Possible reference: Sherry, J. et al. (2025) The Chlamydia effector Dre1 binds dynactin to reposition host organelles during infection., Cell Rep, PMID 40186871
PXD028530 Dataset with its publication pending (from PRIDE)Dataset title: Light-triggered and phosphorylation-dependent 14-3-3 association with NON-PHOTOTROPIC HYPOCOTYL 3 is required for hypocotyl phototropismPossible reference: Reuter, L. et al. (2021) Light-triggered and phosphorylation-dependent 14-3-3 association with NON-PHOTOTROPIC HYPOCOTYL 3 is required for hypocotyl phototropism., Nat Commun, PMID 34675219
PXD028526 Dataset with its publication pending (from PRIDE)Dataset title: Metabolic Remodeling during Nitrogen Fixation in ZymomonasPossible reference: Martien, JI. et al. (2021) Metabolic Remodeling during Nitrogen Fixation in Zymomonas mobilis., mSystems, PMID 34783580
PXD028524 Dataset with its publication pending (from PRIDE)Dataset title: Drosophila female reproductive glands contribute to mating plug composition and the timing of sperm ejectionPossible reference: McDonough-Goldstein, CE. et al. (2022) Drosophila female reproductive glands contribute to mating plug composition and the timing of sperm ejection., Proc Biol Sci, PMID 35105240
PXD028523 Dataset with its publication pending (from PRIDE)Dataset title: Cell-surface tethered promiscuous biotinylators enable comparative small-scale surface proteomic analysis of human extracellular vesicles and cellsPossible reference: Kirkemo, LL. et al. (2022) Cell-surface tethered promiscuous biotinylators enable comparative small-scale surface proteomic analysis of human extracellular vesicles and cells., Elife, PMID 35257663
PXD028522 Dataset with its publication pending (from PRIDE)Dataset title: Molecular architecture of the antiophidic protein DM64 and its binding specificity to myotoxin II from Bothrops asper venomPossible reference: Soares, BS. et al. (2021) Molecular Architecture of the Antiophidic Protein DM64 and its Binding Specificity to Myotoxin II From Bothrops asper Venom., Front Mol Biosci, PMID 35155563
PXD028521 Dataset with its publication pending (from PRIDE)Dataset title: Multi-omics reveals molecular responses to aneuploidy in LeishmaniaPossible reference: Cuypers, B. et al. (2022) Four layer multi-omics reveals molecular responses to aneuploidy in Leishmania., PLoS Pathog, PMID 36149920
PXD028516 Dataset with its publication pending (from PRIDE)Dataset title: importance of MTFP1 for mitochondrial function in the heartPossible reference: Wang, K. et al. (2017) Circular RNA mediates cardiomyocyte death via miRNA-dependent upregulation of MTP18 expression., Cell Death Differ, PMID 28498369
PXD028502 Dataset with its publication pending (from PRIDE)Dataset title: Correlative proteomics identify the key roles of stress tolerance strategies in Acinetobacter baumannii in response to polymyxin and macrophagesPossible reference: Kho, ZY. et al. (2022) Correlative proteomics identify the key roles of stress tolerance strategies in Acinetobacter baumannii in response to polymyxin and human macrophages., PLoS Pathog, PMID 35231068
PXD028494 Dataset with its publication pending (from PRIDE)Dataset title: RNA and phosphoprotein profiles of TP53- and PTEN-knockouts in MCF10A at baseline and responding to DNA damagePossible reference: Lin, C. et al. (2024) RNA and phosphoprotein profiles of TP53- and PTEN-knockouts in MCF10A at baseline and responding to DNA damage., Sci Data, PMID 38177134
PXD028484 Dataset with its publication pending (from PRIDE)Dataset title: Drosophila nicotinic acetylcholine receptor subunits and their native interactions with insecticidal peptide toxinsPossible reference: Korona, D. et al. (2022) Drosophila nicotinic acetylcholine receptor subunits and their native interactions with insecticidal peptide toxins., Elife, PMID 35575460
PXD028481 Dataset with its publication pending (from PRIDE)Dataset title: ZNF384 fusion oncoproteins drive lineage aberrancy in acute leukemiaPossible reference: Dickerson, KM. et al. (2022) ZNF384 Fusion Oncoproteins Drive Lineage Aberrancy in Acute Leukemia., Blood Cancer Discov, PMID 35247902
PXD028445 Dataset with its publication pending (from jPOST)Dataset title: Phosphoproteome of patient derived lung cancer cellsPossible reference: Jun, HJ. et al. (2012) The oncogenic lung cancer fusion kinase CD74-ROS activates a novel invasiveness pathway through E-Syt1 phosphorylation., Cancer Res, PMID 22659450
PXD028432 Dataset with its publication pending (from PRIDE)Dataset title: Salvi_PNAS_Phosphoproteome_ATRwt-ckoPossible reference: Salvi, JS. et al. (2022) ATR activity controls stem cell quiescence via the cyclin F-SCF complex., Proc Natl Acad Sci U S A, PMID 35476521
PXD028429 Dataset with its publication pending (from PRIDE)Dataset title: Proteomics of serum samples from COVID-19 ARDS and bacterial ARDS patientsPossible reference: Kewalramani, N. et al. (2025) Heme-induced lung injury in human precision cut lung slices: a new model for acute lung injury., Respir Res, PMID 40176049
PXD028426 Dataset with its publication pending (from PRIDE)Dataset title: Proteome-Wide Analysis of Lysine 2-Hydroxyisobutyrylation in the Aspergillus niger in PeanutsPossible reference: Xu, M. et al. (2021) Proteome-Wide Analysis of Lysine 2-Hydroxyisobutyrylation in Aspergillus niger in Peanuts., Front Microbiol, PMID 34489910
PXD028421 Dataset with its publication pending (from PRIDE)Dataset title: “Identifying the SLC25A46 interactome in transgenic mice: cerebrumâ€Possible reference: Perivolidi, VI. et al. (2022) Proteomic Identification of the SLC25A46 Interactome in Transgenic Mice Expressing SLC25A46-FLAG., J Proteome Res, PMID 34983179
PXD028416 Dataset with its publication pending (from PRIDE)Dataset title: ProMetIS: deep phenotyping of mouse models by proteomics and metabolomics.Possible reference: Imbert, A. et al. (2021) ProMetIS, deep phenotyping of mouse models by combined proteomics and metabolomics analysis., Sci Data, PMID 34862403
PXD028405 Dataset with its publication pending (from PRIDE)Dataset title: Profiling 4-thiouridine across E. coli tRNAsPossible reference: Bommisetti, P. et al. (2022) Site-Specific Profiling of 4-Thiouridine Across Transfer RNA Genes in Escherichia coli., ACS Omega, PMID 35155896
PXD028398 Dataset with its publication pending (from PRIDE)Dataset title: Comprehensive chemical proteomics analyses reveal that the new TRi-1 and TRi-2 compounds are more specific thioredoxin reductase 1 inhibitors than AuranofinPossible reference: Sabatier, P. et al. (2021) Comprehensive chemical proteomics analyses reveal that the new TRi-1 and TRi-2 compounds are more specific thioredoxin reductase 1 inhibitors than auranofin., Redox Biol, PMID 34788728
PXD028396 Dataset with its publication pending (from PRIDE)Dataset title: Klebsiella pneumoniae x546,ATCC15380, TMTPossible reference: Wang, X. et al. (2021) Rational Proteomic Analysis of a New Domesticated Klebsiella pneumoniae x546 Producing 1,3-Propanediol., Front Microbiol, PMID 34899654
PXD028358 Dataset with its publication pending (from PRIDE)Dataset title: Proteotoxicity caused by perturbed protein complexes underlies hybrid incompatibilityPossible reference: Swamy, KBS. et al. (2022) Proteotoxicity caused by perturbed protein complexes underlies hybrid incompatibility in yeast., Nat Commun, PMID 35906261
PXD028351 Dataset with its publication pending (from PRIDE)Dataset title: The Hsp90 cochaperone TTT promotes cotranslational maturation of PIKK kinases prior to complex assemblyPossible reference: Toullec, D. et al. (2021) The Hsp90 cochaperone TTT promotes cotranslational maturation of PIKKs prior to complex assembly., Cell Rep, PMID 34686329
PXD028339 Dataset with its publication pending (from PRIDE)Dataset title: Characterization of proteome-size scaling by integrative omics reveals mechanisms of proliferation control in cancerPossible reference: Jones, I. et al. (2023) Characterization of proteome-size scaling by integrative omics reveals mechanisms of proliferation control in cancer., Sci Adv, PMID 36696495
PXD028328 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic analysis of Arabidopsis fsd1 mutants in response to methyl viologenPossible reference: Melicher, P. et al. (2022) Arabidopsis Iron Superoxide Dismutase FSD1 Protects Against Methyl Viologen-Induced Oxidative Stress in a Copper-Dependent Manner., Front Plant Sci, PMID 35360337
PXD028326 Dataset with its publication pending (from PRIDE)Dataset title: Short poly(A) tails are protected from deadenylation by the LARP1-PABP complexPossible reference: Park, J. et al. (2023) Short poly(A) tails are protected from deadenylation by the LARP1-PABP complex., Nat Struct Mol Biol, PMID 36849640
PXD028324 Dataset with its publication pending (from PRIDE)Dataset title: Arginine methylation and ubiquitylation crosstalk controls DNA end-resection and homologous recombination repairPossible reference: Sanchez-Bailon, MP. et al. (2021) Arginine methylation and ubiquitylation crosstalk controls DNA end-resection and homologous recombination repair., Nat Commun, PMID 34728620
PXD028312 Dataset with its publication pending (from PRIDE)Dataset title: Fox serum proteomics analysis suggests host-specific responses to Angiostrongylus vasorum infectionPossible reference: Gillis-Germitsch, N. et al. (2021) Fox Serum Proteomics Analysis Suggests Host-Specific Responses to Angiostrongylus vasorum Infection in Canids., Pathogens, PMID 34832667
PXD028286 Dataset with its publication pending (from PRIDE)Dataset title: Reprograming of Proteasomal Degradation by Branched Chain Amino Acid MetabolismPossible reference: Ravanelli, S. et al. (2022) Reprograming of proteasomal degradation by branched chain amino acid metabolism., Aging Cell, PMID 36168305
PXD028276 Dataset with its publication pending (from PRIDE)Dataset title: The interferon-inducible antiviral GTPase MxB promotes capsid disassembly and genome release of herpesvirusesPossible reference: Serrero, MC. et al. (2022) The interferon-inducible GTPase MxB promotes capsid disassembly and genome release of herpesviruses., Elife, PMID 35475759
PXD028247 Dataset with its publication pending (from PRIDE)Dataset title: AK2 promotes the migration and invasion of lung adenocarcinoma by activating TGF-β/Smad pathway in vitro and in vivoPossible reference: Cai, F. et al. (2021) AK2 Promotes the Migration and Invasion of Lung Adenocarcinoma by Activating TGF-β/Smad Pathway In vitro and In vivo., Front Pharmacol, PMID 34630090
PXD028245 Dataset with its publication pending (from PRIDE)Dataset title: Global phosphoproteomics in SCF stimulated human skin mast cellsPossible reference: Franke, K. et al. (2022) The SCF/KIT axis in human mast cells: Capicua acts as potent KIT repressor and ERK predominates PI3K., Allergy, PMID 35652819
PXD028241 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic analysis of sulfur-respiring haloarchaea from hypersaline lakesPossible reference: Sorokin, DY. et al. (2017) Discovery of anaerobic lithoheterotrophic haloarchaea, ubiquitous in hypersaline habitats., ISME J, PMID 28106880
PXD028240 Dataset with its publication pending (from PRIDE)Dataset title: Regulatory Mechanisms between Pattern- and Effector-Triggered Immunity in Tomato Leaves Revealed by Integrative Proteomic and Phosphoproteomic AnalysesPossible reference: Yu, J. et al. (2021) Integrative Proteomic and Phosphoproteomic Analyses of Pattern- and Effector-Triggered Immunity in Tomato., Front Plant Sci, PMID 34925416
PXD028235 Dataset with its publication pending (from iProX)Dataset title: The acetylated lysine residues of PtaPossible reference: Kuczyńska-Wiśnik, D. et al. (2016) The effect of protein acetylation on the formation and processing of inclusion bodies and endogenous protein aggregates in Escherichia coli cells., Microb Cell Fact, PMID 27832787
PXD028223 Dataset with its publication pending (from iProX)Dataset title: USP9X label-free quantitative proteomicsPossible reference: Karim, AF. et al. (2017) Proteomics and Network Analyses Reveal Inhibition of Akt-mTOR Signaling in CD4+ T Cells by Mycobacterium tuberculosis Mannose-Capped Lipoarabinomannan., Proteomics, PMID 28994205
PXD028221 Dataset with its publication pending (from jPOST)Dataset title: Phosphoproteomics in LRRK2 mutation carriersPossible reference: Garrido, A. et al. (2022) Differential Phospho-Signatures in Blood Cells Identify LRRK2 G2019S Carriers in Parkinson's Disease., Mov Disord, PMID 35049090
PXD028206 Dataset with its publication pending (from jPOST)Dataset title: Enhanced antibacterial effect of a novel Friunavirus phage vWU2001 in combination with colistin against carbapenem-resistant Acinetobacter baumannii Possible reference: Wintachai, P. et al. (2022) Enhanced antibacterial effect of a novel Friunavirus phage vWU2001 in combination with colistin against carbapenem-resistant Acinetobacter baumannii., Sci Rep, PMID 35173237
PXD028204 no publication (from MassIVE)Dataset title: Defining the dynamic regulation of O-GlcNAc proteome in the mouse cortex -- The O-GlcNAcylation of synaptic and trafficking proteins related to neurodegenerative diseasesPossible reference: Huynh, VN. et al. (2021) Defining the Dynamic Regulation of O-GlcNAc Proteome in the Mouse Cortex---the O-GlcNAcylation of Synaptic and Trafficking Proteins Related to Neurodegenerative Diseases., Front Aging, PMID 35822049
PXD028184 no publication (from MassIVE)Dataset title: Pah1 phosphorylation by Rim11 Possible reference: Khondker, S. et al. (2022) Glycogen synthase kinase homolog Rim11 regulates lipid synthesis through the phosphorylation of Pah1 phosphatidate phosphatase in yeast., J Biol Chem, PMID 35780834
PXD028162 Dataset with its publication pending (from PRIDE)Dataset title: Integrated Multi-Omics Reveal Polycomb Repressive Complex 2 Restricts Human Trophoblast InductionPossible reference: Zijlmans, DW. et al. (2022) Integrated multi-omics reveal polycomb repressive complex 2 restricts human trophoblast induction., Nat Cell Biol, PMID 35697783
PXD028160 Dataset with its publication pending (from PRIDE)Dataset title: RNA-binding proteins hnRNPM and ELAVL1 promote type-I interferon induction downstream of the nucleic acid sensors cGAS and RIG-IPossible reference: Kirchhoff, A. et al. (2025) RNA-binding proteins hnRNPM and ELAVL1 promote type-I interferon induction downstream of the nucleic acid sensors cGAS and RIG-I., EMBO J, PMID 39707025
PXD028150 Dataset with its publication pending (from PRIDE)Dataset title: Interrogating kinase-substrate relationships with proximity labeling and phosphorylation enrichmentPossible reference: Zhang, T. et al. (2022) Interrogating Kinase-Substrate Relationships with Proximity Labeling and Phosphorylation Enrichment., J Proteome Res, PMID 35044772
PXD028137 Dataset with its publication pending (from PRIDE)Dataset title: Exopalaemon carinicauda in response to alkalinity stressPossible reference: Ge, Q. et al. (2019) Characterization, functional analysis, and expression levels of three carbonic anhydrases in response to pH and saline-alkaline stresses in the ridgetail white prawn Exopalaemon carinicauda., Cell Stress Chaperones, PMID 30915722
PXD028136 Dataset with its publication pending (from PRIDE)Dataset title: Evaluation of disposable-trap column nanoLC-FAIMS-MS/MS for the proteomic analysis of FFPE tissuePossible reference: Eckert, S. et al. (2021) Evaluation of Disposable Trap Column nanoLC-FAIMS-MS/MS for the Proteomic Analysis of FFPE Tissue., J Proteome Res, PMID 34735149
PXD028128 Dataset with its publication pending (from PRIDE)Dataset title: Proteome characterization of mitochondria, ER, and mitochondrial-associated membrane from BAT and liverPossible reference: Klionsky, DJ. et al. (2016) Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition)., Autophagy, PMID 26799652
PXD028117 Dataset with its publication pending (from PRIDE)Dataset title: Low cell number proteomic analysis using in-cell protease digests reveals a robust signature for cell cycle state classificationPossible reference: Kelly, V. et al. (2022) Low Cell Number Proteomic Analysis Using In-Cell Protease Digests Reveals a Robust Signature for Cell Cycle State Classification., Mol Cell Proteomics, PMID 34742921
PXD028111 Dataset with its publication pending (from PRIDE)Dataset title: Polycomb Repressive Complex 2 Restricts Human Naive Pluripotent Stem Cell to Trophoblast Fate InductionPossible reference: Zijlmans, DW. et al. (2022) Integrated multi-omics reveal polycomb repressive complex 2 restricts human trophoblast induction., Nat Cell Biol, PMID 35697783
PXD028082 Dataset with its publication pending (from PRIDE)Dataset title: Bioinformatics and mass spectrometry-based proteomics reveal alcohol dehydrogenase 1B as a blood biomarker candidate to monitor acetaminophen-induced liver injuryPossible reference: Pailleux, F. et al. (2021) Mass Spectrometry-Based Proteomics Reveal Alcohol Dehydrogenase 1B as a Blood Biomarker Candidate to Monitor Acetaminophen-Induced Liver Injury., Int J Mol Sci, PMID 34681731
PXD028074 Dataset with its publication pending (from PRIDE)Dataset title: Karyopherin enrichment and compensation fortifies the nuclear pore complex against nucleocytoplasmic leakagePossible reference: Kalita, J. et al. (2022) Karyopherin enrichment and compensation fortifies the nuclear pore complex against nucleocytoplasmic leakage., J Cell Biol, PMID 35089308
PXD028063 Dataset with its publication pending (from PRIDE)Dataset title: Defining proximity proteomics of Histone modifications by antibody-mediated protein A-APEX2 labelingPossible reference: Li, X. et al. (2022) Defining Proximity Proteome of Histone Modifications by Antibody-mediated Protein A-APEX2 Labeling., Genomics Proteomics Bioinformatics, PMID 34555496
PXD028055 no publication (from MassIVE)Dataset title: A Multi-omics Method Enabled by Sequential Metabolomics and Proteomics for Human Pluripotent Stem Cell-derived CardiomyocytesPossible reference: Bayne, EF. et al. (2021) Multiomics Method Enabled by Sequential Metabolomics and Proteomics for Human Pluripotent Stem-Cell-Derived Cardiomyocytes., J Proteome Res, PMID 34499502
PXD028049 Dataset with its publication pending (from PRIDE)Dataset title: Unravelling the layering of microbial community, proteins and chemical structure in aerobic granulesPossible reference: Cydzik-Kwiatkowska, A. et al. (2022) Unravelling gradient layers of microbial communities, proteins, and chemical structure in aerobic granules., Sci Total Environ, PMID 35276168
PXD028040 Dataset with its publication pending (from PRIDE)Dataset title: Patch-Clamp Proteomics of Single Neurons in Tissue Using Electrophysiology and Subcellular Capillary Electrophoresis Mass SpectrometryPossible reference: Choi, SB. et al. (2022) Patch-Clamp Proteomics of Single Neurons in Tissue Using Electrophysiology and Subcellular Capillary Electrophoresis Mass Spectrometry., Anal Chem, PMID 34964611
PXD028037 Dataset with its publication pending (from PRIDE)Dataset title: A lysosome-targeted DNA nanodevice selectively targets macrophages to attenuate tumorsPossible reference: Cui, C. et al. (2021) A lysosome-targeted DNA nanodevice selectively targets macrophages to attenuate tumours., Nat Nanotechnol, PMID 34764452
PXD028030 no publication (from MassIVE)Dataset title: Characterization of covalent bonding of 4-methylcatechol to beta-lactoglobulin and the effect on in vitro protein digestibilityPossible reference: Waqar, K. et al. (2022) Covalent bonding of 4-methylcatechol to β-lactoglobulin results in the release of cysteine-4-methylcatechol adducts after in vitro digestion., Food Chem, PMID 35917780
PXD028002 Dataset with its publication pending (from PRIDE)Dataset title: Mapping protein interactions in the active TOM-TIM23 supercomplexPossible reference: Gomkale, R. et al. (2021) Mapping protein interactions in the active TOM-TIM23 supercomplex., Nat Commun, PMID 34588454
PXD027971 Dataset with its publication pending (from PRIDE)Dataset title: Simple, single-shot phosphoproteomic analysis of heat-stable tauPossible reference: Leslie, SN. et al. (2021) Simple, Single-Shot Phosphoproteomic Analysis of Heat-Stable Tau Identifies Age-Related Changes in pS235- and pS396-Tau Levels in Non-human Primates., Front Aging Neurosci, PMID 34867294
PXD027956 no publication (from MassIVE)Dataset title: Peroxynitrite in tumor microenvironment change the profile of peptide epitopes on tumor cells allowing their escape from cancer immunotherapyPossible reference: Tcyganov, EN. et al. (2022) Peroxynitrite in the tumor microenvironment changes the profile of antigens allowing escape from cancer immunotherapy., Cancer Cell, PMID 36220073
PXD027946 Dataset with its publication pending (from PRIDE)Dataset title: Identification of ubiquitin binding protein using TurboID analysisPossible reference: Schmitt, K. et al. (2021) A Multi-Perspective Proximity View on the Dynamic Head Region of the Ribosomal 40S Subunit., Int J Mol Sci, PMID 34769086
PXD027940 Dataset with its publication pending (from PRIDE)Dataset title: Tomato trifoliate mutant proteomePossible reference: Tyagi, K. et al. (2022) Seeing the unseen: a trifoliate (MYB117) mutant allele fortifies folate and carotenoids in tomato fruits., Plant J, PMID 35899408
PXD027935 Dataset with its publication pending (from PRIDE)Dataset title: A nuclear role for the Argonaute protein AGO2 in mammalian gametogenesisPossible reference: Griffin, KN. et al. (2022) Widespread association of the Argonaute protein AGO2 with meiotic chromatin suggests a distinct nuclear function in mammalian male reproduction., Genome Res, PMID 36109149
PXD027927 no publication (from MassIVE)Dataset title: Proteomics of high density lipoprotein subfractions in type 1 diabetes mellitus and controlsPossible reference: Toyoshima, MTK. et al. (2023) Proteomics of high-density lipoprotein subfractions and subclinical atherosclerosis in type 1 diabetes mellitus: a case-control study., Diabetol Metab Syndr, PMID 36899434
PXD027917 Dataset with its publication pending (from PRIDE)Dataset title: A proximity interactome map of the VAC14-FIG4 complex using BioIDPossible reference: Qiu, S. et al. (2021) Proximity Interactome Map of the Vac14-Fig4 Complex Using BioID., J Proteome Res, PMID 34554760
PXD027891 Dataset with its publication pending (from PRIDE)Dataset title: pH dependence of succinimide ester-based protein cross-linking for structural mass spectrometry applicationsPossible reference: Trabjerg, E. et al. (2022) pH Dependence of Succinimide-Ester-Based Protein Cross-Linking for Structural Mass Spectrometry Applications., ACS Meas Sci Au, PMID 36785722
PXD027856 Dataset with its publication pending (from PRIDE)Dataset title: Calcineurin increases expression of aldosterone synthase via dephosphorylation of NFATc4Possible reference: Berber, M. et al. (2023) Calcineurin regulates aldosterone production via dephosphorylation of NFATC4., JCI Insight, PMID 37310791
PXD027853 no publication (from MassIVE)Dataset title: Triazine pyridine Chemistry for Protein Labelling on Tyrosine.Possible reference: Li, T. et al. (2016) First-in-human, open-label dose-escalation and dose-expansion study of the safety, pharmacokinetics, and antitumor effects of an oral ALK inhibitor ASP3026 in patients with advanced solid tumors., J Hematol Oncol, PMID 26966027
PXD027851 no publication (from MassIVE)Dataset title: Triazine Pyridine Chemistry for Protein Labelling on TyrosinePossible reference: Li, T. et al. (2016) First-in-human, open-label dose-escalation and dose-expansion study of the safety, pharmacokinetics, and antitumor effects of an oral ALK inhibitor ASP3026 in patients with advanced solid tumors., J Hematol Oncol, PMID 26966027
PXD027847 Dataset with its publication pending (from PRIDE)Dataset title: Lentil and fava bean with contrasting germination kinetics: a focus on digestion of proteins and bioactivity of resistant peptidesPossible reference: Bautista-Expósito, S. et al. (2021) Lentil and Fava Bean With Contrasting Germination Kinetics: A Focus on Digestion of Proteins and Bioactivity of Resistant Peptides., Front Plant Sci, PMID 34759946
PXD027842 Dataset with its publication pending (from iProX)Dataset title: Platelets Derived Transthyretin Participate in The Development of Sepsis Associated Acute KidneyPossible reference: Lv, D. et al. (2022) Platelets Derived Transthyretin Participate in The Development of Sepsis Associated Acute Kidney Injury by Inducing Oxidative Stress and Apoptosis of Renal Tubular Epithelial Cells., Shock, PMID 35081075
PXD027835 Dataset with its publication pending (from PRIDE)Dataset title: Growth Rate Dependent and Nutrient-specific Gene Expression Resource Allocation in Fission YeastPossible reference: Kleijn, IT. et al. (2022) Growth-rate-dependent and nutrient-specific gene expression resource allocation in fission yeast., Life Sci Alliance, PMID 35228260
PXD027825 Dataset with its publication pending (from PRIDE)Dataset title: HA-MOP knockin mice express the canonical µ-opioid receptor but lack detectable splice variantsPossible reference: Fritzwanker, S. et al. (2021) HA-MOP knockin mice express the canonical µ-opioid receptor but lack detectable splice variants., Commun Biol, PMID 34522000
PXD027821 Dataset with its publication pending (from PRIDE)Dataset title: Interval-based secretomics unravels the time-dependent acute phase response in hepatocyte model systemsPossible reference: Knecht, S. et al. (2022) Interval-Based Secretomics Unravels Acute-Phase Response in Hepatocyte Model Systems., Mol Cell Proteomics, PMID 35525403
PXD027815 Dataset with its publication pending (from PRIDE)Dataset title: Proteomics analysis based upon TNBS-induced UC model ratsPossible reference: Rong, Y. et al. (2021) Photodynamic Therapy of Novel Photosensitizer Ameliorates TNBS-Induced Ulcerative Colitis via Inhibition of AOC1., Front Pharmacol, PMID 34744725
PXD027812 Dataset with its publication pending (from PRIDE)Dataset title: Proteome landscape of schizophrenia in patient-derived cerebral organoidsPossible reference: Notaras, M. et al. (2021) The proteomic architecture of schizophrenia iPSC-derived cerebral organoids reveals alterations in GWAS and neuronal development factors., Transl Psychiatry, PMID 34667143
PXD027798 Dataset with its publication pending (from iProX)Dataset title: Rack1 is Essential for Corticogenesis by Preventing P21-Dependent Senescence in Neural Stem CellsPossible reference: Zhu, Q. et al. (2021) Rack1 is essential for corticogenesis by preventing p21-dependent senescence in neural stem cells., Cell Rep, PMID 34469723
PXD027796 Dataset with its publication pending (from PRIDE)Dataset title: Diel proteomes of field Trichodesmium populationsPossible reference: Held, NA. et al. (2022) Dynamic diel proteome and daytime nitrogenase activity supports buoyancy in the cyanobacterium Trichodesmium., Nat Microbiol, PMID 35013592
PXD027780 Dataset with its publication pending (from PRIDE)Dataset title: Connecting multiple microenvironment proteomes uncovers the biology in head and neck cancerPossible reference: Busso-Lopes, AF. et al. (2022) Connecting multiple microenvironment proteomes uncovers the biology in head and neck cancer., Nat Commun, PMID 36344512
PXD027757 Dataset with its publication pending (from PRIDE)Dataset title: Mitochondrial interactome quantitation reveals structural changes in metabolic machinery in failing murine heartPossible reference: Caudal, A. et al. (2022) Mitochondrial interactome quantitation reveals structural changes in metabolic machinery in the failing murine heart., Nat Cardiovasc Res, PMID 36405497
PXD027749 Dataset with its publication pending (from PRIDE)Dataset title: Peripheral blood CD4+CCR6+ compartment differentiate HIV-1 positive elite controllers from long-term successfully treated individualsPossible reference: Svensson Akusjärvi, S. et al. (2022) Peripheral blood CD4+CCR6+ compartment differentiates HIV-1 infected or seropositive elite controllers from long-term successfully treated individuals., Commun Biol, PMID 35418589
PXD027740 Dataset with its publication pending (from PRIDE)Dataset title: Enhancer recruitment of transcription repressors RUNX1 and TLE3 by mis-expressed FOXC1 blocks differentiation in acute myeloid leukemiaPossible reference: Simeoni, F. et al. (2021) Enhancer recruitment of transcription repressors RUNX1 and TLE3 by mis-expressed FOXC1 blocks differentiation in acute myeloid leukemia., Cell Rep, PMID 34551306
PXD027738 Dataset with its publication pending (from PRIDE)Dataset title: Neprilysins regulate muscle contraction and heart function via cleavage of SERCA-inhibitory micropeptidesPossible reference: Schiemann, R. et al. (2022) Neprilysins regulate muscle contraction and heart function via cleavage of SERCA-inhibitory micropeptides., Nat Commun, PMID 35906206
PXD027728 Dataset with its publication pending (from PRIDE)Dataset title: Emergence and intensification of dairying in the Caucasus and Eurasian steppesPossible reference: Scott, A. et al. (2022) Emergence and intensification of dairying in the Caucasus and Eurasian steppes., Nat Ecol Evol, PMID 35393601
PXD027720 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic analysis of residues from experimental ceramicsPossible reference: Rafalska, KT. et al. (2024) A Comparison of White and Yellow Seminal Plasma Phosphoproteomes Obtained from Turkey (Meleagris gallopavo) Semen., Int J Mol Sci, PMID 39337428
PXD027715 Dataset with its publication pending (from PRIDE)Dataset title: Myeloid-derived suppressor cells and tolerogenic dendritic cells are distinctively induced by PI3K and Wnt signaling pathwaysPossible reference: van Wigcheren, GF. et al. (2023) Myeloid-derived suppressor cells and tolerogenic dendritic cells are distinctively induced by PI3K and Wnt signaling pathways., J Biol Chem, PMID 37739035
PXD027713 Dataset with its publication pending (from PRIDE)Dataset title: Ancient proteins resolve controversy over the identity of Genyornis eggshellPossible reference: Demarchi, B. et al. (2022) Ancient proteins resolve controversy over the identity of Genyornis eggshell., Proc Natl Acad Sci U S A, PMID 35609205
PXD027688 no publication (from MassIVE)Dataset title: Thiol-Based Functional Mimicry of Phosphorylation of the Two-Component System Response Regulator ArcA Promotes Pathogenesis in Enteric PathogensPossible reference: Zhou, Y. et al. (2021) Thiol-based functional mimicry of phosphorylation of the two-component system response regulator ArcA promotes pathogenesis in enteric pathogens., Cell Rep, PMID 34936880
PXD027687 Dataset with its publication pending (from jPOST)Dataset title: ITS2 sequencing and targeted meta-proteomics of infant gut mycobiome reveal the functional role of Rhodotorula sp. during atopic dermatitis manifestationPossible reference: Mok, K. et al. (2021) ITS2 Sequencing and Targeted Meta-Proteomics of Infant Gut Mycobiome Reveal the Functional Role of Rhodotorula sp. during Atopic Dermatitis Manifestation., J Fungi (Basel), PMID 34575786
PXD027679 Dataset with its publication pending (from jPOST)Dataset title: Sample Size-comparable Spectral Library Enhances Data-Independent Acquisition-based Proteome Coverage of Low-input CellsPossible reference: Siyal, AA. et al. (2021) Sample Size-Comparable Spectral Library Enhances Data-Independent Acquisition-Based Proteome Coverage of Low-Input Cells., Anal Chem, PMID 34904835
PXD027677 Dataset with its publication pending (from jPOST)Dataset title: ALK substrate identification and validationPossible reference: Adachi, J. et al. (2022) Systematic identification of ALK substrates by integrated phosphoproteome and interactome analysis., Life Sci Alliance, PMID 35508387
PXD027667 Dataset with its publication pending (from PRIDE)Dataset title: Beta-synuclein potentiates synaptic vesicle dopamine uptake and rescues dopaminergic neurons from MPTP-induced death in the absence of other synucleinsPossible reference: Ninkina, N. et al. (2021) β-synuclein potentiates synaptic vesicle dopamine uptake and rescues dopaminergic neurons from MPTP-induced death in the absence of other synucleins., J Biol Chem, PMID 34736896
PXD027656 Dataset with its publication pending (from PRIDE)Dataset title: Intratumoral magnetic hyperthermia in combination with 5-fluorouracil induces thrombogenic collagen fibers, cellular stress, and immune responses in heterotopic human colon cancer in micePossible reference: Dabaghi, M. et al. (2021) Iron Oxide Nanoparticles Carrying 5-Fluorouracil in Combination with Magnetic Hyperthermia Induce Thrombogenic Collagen Fibers, Cellular Stress, and Immune Responses in Heterotopic Human Colon Cancer in Mice., Pharmaceutics, PMID 34683917
PXD027642 Dataset with its publication pending (from PRIDE)Dataset title: human embryo proteome reprogramming by endometrial extracellular vesiclesPossible reference: Rai, A. et al. (2021) Proteomic profiling of human uterine extracellular vesicles reveal dynamic regulation of key players of embryo implantation and fertility during menstrual cycle., Proteomics, PMID 33634576
PXD027628 Dataset with its publication pending (from PRIDE)Dataset title: Radiation exposure elicits a neutrophil-driven response in healthy lung tissue that enhances metastatic colonizationPossible reference: Nolan, E. et al. (2022) Radiation exposure elicits a neutrophil-driven response in healthy lung tissue that enhances metastatic colonization., Nat Cancer, PMID 35221334
PXD027622 Dataset with its publication pending (from PRIDE)Dataset title: “Identifying the SLC25A46 interactome in transgenic mice: Heart"Possible reference: Perivolidi, VI. et al. (2022) Proteomic Identification of the SLC25A46 Interactome in Transgenic Mice Expressing SLC25A46-FLAG., J Proteome Res, PMID 34983179
PXD027621 Dataset with its publication pending (from PRIDE)Dataset title: Protective effect and mechanism of kinsenoside on alcoholic liver injuryPossible reference: Gao, L. et al. (2021) Kinsenoside Alleviates Alcoholic Liver Injury by Reducing Oxidative Stress, Inhibiting Endoplasmic Reticulum Stress, and Regulating AMPK-Dependent Autophagy., Front Pharmacol, PMID 35115920
PXD027614 Dataset with its publication pending (from PRIDE)Dataset title: Global ubiquitylation analysis of mitochondria in primary neurons identifies endogenous Parkin targets following activation of PINK1Possible reference: Antico, O. et al. (2021) Global ubiquitylation analysis of mitochondria in primary neurons identifies endogenous Parkin targets following activation of PINK1., Sci Adv, PMID 34767452
PXD027613 Dataset with its publication pending (from PRIDE)Dataset title: Paleofeces Analysis from Iron Age Hallstatt Salt MinersPossible reference: Maixner, F. et al. (2021) Hallstatt miners consumed blue cheese and beer during the Iron Age and retained a non-Westernized gut microbiome until the Baroque period., Curr Biol, PMID 34648730
PXD027612 Dataset with its publication pending (from PRIDE)Dataset title: The SR protein kinase Sky2 is involved in regulation of dipeptide transport in Candida albicansPossible reference: Brandt, P. et al. (2022) Candida albicans SR-Like Protein Kinases Regulate Different Cellular Processes: Sky1 Is Involved in Control of Ion Homeostasis, While Sky2 Is Important for Dipeptide Utilization., Front Cell Infect Microbiol, PMID 35601106
PXD027609 Dataset with its publication pending (from PRIDE)Dataset title: Low temperature exposure has immediate and lasting effects on the stress tolerance, chemotaxis and proteome of entomopathogenic nematodesPossible reference: Lillis, PE. et al. (2023) Low-temperature exposure has immediate and lasting effects on the stress tolerance, chemotaxis and proteome of entomopathogenic nematodes., Parasitology, PMID 36328953
PXD027608 Dataset with its publication pending (from PRIDE)Dataset title: The Effect of Temperature Conditioning (9°C and 20°C) on the Proteome of Steinernema carpocapsae and Heterorhabditis megidis Infective JuvenilesPossible reference: Lillis, PE. et al. (2022) The effect of temperature conditioning (9°C and 20°C) on the proteome of entomopathogenic nematode infective juveniles., PLoS One, PMID 35390034
PXD027605 no publication (from MassIVE)Dataset title: Structural O-Glycoform Heterogeneity of the SARS-CoV-2 Spike Protein Receptor-Binding Domain Revealed by Top-Down Mass SpectrometryPossible reference: Roberts, DS. et al. (2021) Structural O-Glycoform Heterogeneity of the SARS-CoV-2 Spike Protein Receptor-Binding Domain Revealed by Native Top-Down Mass Spectrometry., bioRxiv, PMID 33688648
PXD027603 Dataset with its publication pending (from PRIDE)Dataset title: “Identifying the SLC25A46 interactome in transgenic mice: Thymus"Possible reference: Perivolidi, VI. et al. (2022) Proteomic Identification of the SLC25A46 Interactome in Transgenic Mice Expressing SLC25A46-FLAG., J Proteome Res, PMID 34983179
PXD027599 Dataset with its publication pending (from PRIDE)Dataset title: “Identifying the SLC25A46 interactome in transgenic mice: cerebellumâ€Possible reference: Perivolidi, VI. et al. (2022) Proteomic Identification of the SLC25A46 Interactome in Transgenic Mice Expressing SLC25A46-FLAG., J Proteome Res, PMID 34983179
PXD027588 Dataset with its publication pending (from PRIDE)Dataset title: Deciphering the major metabolic pathways associated with aluminum tolerance in popcorn roots using label-free quantitative proteomicsPossible reference: Pinto, VB. et al. (2021) Deciphering the major metabolic pathways associated with aluminum tolerance in popcorn roots using label-free quantitative proteomics., Planta, PMID 34821986
PXD027586 Dataset with its publication pending (from PRIDE)Dataset title: Temporal Analysis of Protein Ubiquitylation and Phosphorylation During Parkin-dependent MitophagyPossible reference: Zittlau, KI. et al. (2022) Temporal Analysis of Protein Ubiquitylation and Phosphorylation During Parkin-Dependent Mitophagy., Mol Cell Proteomics, PMID 34974192
PXD027549 Dataset with its publication pending (from PRIDE)Dataset title: O-GlcNAcylation of fatty acid synthase under nutritional stress as a pro-survival mechanism in cancer cellsPossible reference: Wong, YK. et al. (2022) O-GlcNAcylation promotes fatty acid synthase activity under nutritional stress as a pro-survival mechanism in cancer cells., Proteomics, PMID 35083852
PXD027544 Dataset with its publication pending (from PRIDE)Dataset title: Sex differences in the role of protein degradation in the amygdala during fear memory formationPossible reference: Farrell, K. et al. (2023) Sex-differences in proteasome-dependent K48-polyubiquitin signaling in the amygdala are developmentally regulated in rats., Biol Sex Differ, PMID 37950270
PXD027543 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic Analysis of Oil-Roasted Cashew Using a Customized DatabasePossible reference: Chen, S. et al. (2022) Proteomic Analysis of Oil-Roasted Cashews Using a Customized Allergen-Focused Protein Database., J Proteome Res, PMID 35658452
PXD027538 Dataset with its publication pending (from PRIDE)Dataset title: TMT proteomic analysis of thyroid cancer tissue samplePossible reference: Li, J. et al. (2023) Identification of potential diagnostic and prognostic biomarkers for papillary thyroid microcarcinoma (PTMC) based on TMT-labeled LC-MS/MS and machine learning., J Endocrinol Invest, PMID 36418670
PXD027534 Dataset with its publication pending (from PRIDE)Dataset title: Proteome of mouse striatal dopamine synaptosomes purified by fluorescence sortingPossible reference: Paget-Blanc, V. et al. (2022) A synaptomic analysis reveals dopamine hub synapses in the mouse striatum., Nat Commun, PMID 35660742
PXD027520 Dataset with its publication pending (from PRIDE)Dataset title: The Angiostrongylus vasorum excretory/secretory proteome contains putative modulators of the host coagulationPossible reference: Gillis-Germitsch, N. et al. (2021) The Angiostrongylus vasorum Excretory/Secretory and Surface Proteome Contains Putative Modulators of the Host Coagulation., Front Cell Infect Microbiol, PMID 34796127
PXD027502 Dataset with its publication pending (from PRIDE)Dataset title: : GRAMD1C regulates autophagy initiation and mitochondrial bioenergetics through ER-Mitochondria cholesterol transportPossible reference: Ng, MYW. et al. (2022) The cholesterol transport protein GRAMD1C regulates autophagy initiation and mitochondrial bioenergetics., Nat Commun, PMID 36270994
PXD027489 Dataset with its publication pending (from PRIDE)Dataset title: Coupled protein synthesis and ribosome-guided piRNA processing on mRNAsPossible reference: Sun, YH. et al. (2021) Coupled protein synthesis and ribosome-guided piRNA processing on mRNAs., Nat Commun, PMID 34645830
PXD027481 Dataset with its publication pending (from PRIDE)Dataset title: Coccolith Vesicle Proteins from Emiliania huxleyiPossible reference: Nam, O. et al. (2019) De novo transcriptome profile of coccolithophorid alga Emiliania huxleyi CCMP371 at different calcium concentrations with proteome analysis., PLoS One, PMID 31465514
PXD027479 Dataset with its publication pending (from PRIDE)Dataset title: Translational repression of NMD targets by GIGYF2 and EIF4E2Possible reference: Zinshteyn, B. et al. (2021) Translational repression of NMD targets by GIGYF2 and EIF4E2., PLoS Genet, PMID 34665823
PXD027476 Dataset with its publication pending (from PRIDE)Dataset title: Quantitative proteomics reveals the selectivity of ubiquitin-binding autophagy receptors in the turnover of damaged lysosomes by lysophagyPossible reference: Eapen, VV. et al. (2021) Quantitative proteomics reveals the selectivity of ubiquitin-binding autophagy receptors in the turnover of damaged lysosomes by lysophagy., Elife, PMID 34585663
PXD027452 Dataset with its publication pending (from PRIDE)Dataset title: Annexin A1 is a polarity cue that directs planar mitotic spindle orientation during mammalian epithelial morphogenesisPossible reference: Fankhaenel, M. et al. (2023) Annexin A1 is a polarity cue that directs mitotic spindle orientation during mammalian epithelial morphogenesis., Nat Commun, PMID 36631478
PXD027442 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic analysis reveals the protective effects of Yiqi Fumai lyophilized injection on chronic heart failure by improving myocardial energy metabolismPossible reference: Han, X. et al. (2021) Proteomic Analysis Reveals the Protective Effects of Yiqi Fumai Lyophilized Injection on Chronic Heart Failure by Improving Myocardial Energy Metabolism., Front Pharmacol, PMID 34630097
PXD027440 Dataset with its publication pending (from PRIDE)Dataset title: Emiliania huxleyi coccosphere associated proteins identificationPossible reference: Walker, CE. et al. (2018) The requirement for calcification differs between ecologically important coccolithophore species., New Phytol, PMID 29916209
PXD027425 Dataset with its publication pending (from PRIDE)Dataset title: Data-independent acquisition mass spectrometry for site-specific glycoproteomics characterization of SARS-CoV-2 spike proteinPossible reference: Chang, D. et al. (2021) Data-independent acquisition mass spectrometry for site-specific glycoproteomics characterization of SARS-CoV-2 spike protein., Anal Bioanal Chem, PMID 34635934
PXD027422 no publication (from MassIVE)Dataset title: Effect of GP130 Antagonism on Microtubule Associated ProteinsPossible reference: Prisco, SZ. et al. (2022) Inflammatory Glycoprotein 130 Signaling Links Changes in Microtubules and Junctophilin-2 to Altered Mitochondrial Metabolism and Right Ventricular Contractility., Circ Heart Fail, PMID 34923829
PXD027417 Dataset with its publication pending (from PRIDE)Dataset title: Global identification and systematic analysis of lysine malonylation in maize (Zea mays L.Possible reference: Xu, M. et al. (2021) Global Identification and Systematic Analysis of Lysine Malonylation in Maize (Zea mays L.)., Front Plant Sci, PMID 34490025
PXD027413 Dataset with its publication pending (from PRIDE)Dataset title: A direct interplay between the co-chaperones Hop and p23 regulates cycle progression and client folding in the Hsp70/Hsp90 chaperone machineriesPossible reference: Dahiya, V. et al. (2022) The switch from client holding to folding in the Hsp70/Hsp90 chaperone machineries is regulated by a direct interplay between co-chaperones., Mol Cell, PMID 35176233
PXD027410 Dataset with its publication pending (from PRIDE)Dataset title: Proteomics reveals an increase in the abundance of glycolytic and ethanolic fermentation enzymes in developing sugarcane culms during sucrose accumulationPossible reference: Boaretto, LF. et al. (2021) Proteomics Reveals an Increase in the Abundance of Glycolytic and Ethanolic Fermentation Enzymes in Developing Sugarcane Culms During Sucrose Accumulation., Front Plant Sci, PMID 34659289
PXD027388 Dataset with its publication pending (from PRIDE)Dataset title: Integrative proteomics and phosphoproteomics reveals phosphorylation networks involved in maintenance and expression of embryogenic competence in sugarcane callusPossible reference: Xavier, LR. et al. (2022) Integrative proteomics and phosphoproteomics reveals phosphorylation networks involved in the maintenance and expression of embryogenic competence in sugarcane callus., J Plant Physiol, PMID 34906795
PXD027387 Dataset with its publication pending (from PRIDE)Dataset title: Conserved exchange of paralog proteins during neuronal differentiationPossible reference: Schmidt, S. et al. (2014) Function and regulation of the Rho guanine nucleotide exchange factor Trio., Small GTPases, PMID 24987837
PXD027383 Dataset with its publication pending (from PRIDE)Dataset title: A Multiplexed Parallel Reaction Monitoring Assay to monitor bovine Pregnancy-Associated Glycoproteins throughout pregnancy and after gestationPossible reference: Krebs, T. et al. (2022) A multiplexed parallel reaction monitoring assay to monitor bovine pregnancy-associated glycoproteins throughout pregnancy and after gestation., PLoS One, PMID 36149860
PXD027377 Dataset with its publication pending (from jPOST)Dataset title: Proteomic analysis of the aggregated proteins from LONP1 knockdown HeLa cellsPossible reference: Pollecker, K. et al. (2021) Proteomic analysis demonstrates the role of the quality control protease LONP1 in mitochondrial protein aggregation., J Biol Chem, PMID 34461102
PXD027375 Dataset with its publication pending (from jPOST)Dataset title: Quantitative protein profiling of phenobarbital-induced drug metabolizing enzymes in rat liver by liquid chromatography mass spectrometry using FFPE samplePossible reference: Yamauchi, H. et al. (2021) Quantitative protein profiling of phenobarbital-induced drug metabolizing enzymes in rat liver by liquid chromatography mass spectrometry using formalin-fixed paraffin-embedded samples., J Pharmacol Toxicol Methods, PMID 34363961
PXD027373 no publication (from MassIVE)Dataset title: Mammalian hybrid pre-autophagosomal structure HyPAS generates autophagosomesPossible reference: Kumar, S. et al. (2021) Mammalian hybrid pre-autophagosomal structure HyPAS generates autophagosomes., Cell, PMID 34741801
PXD027372 Dataset with its publication pending (from PanoramaPublic)Dataset title: Loss of DNAJC3 impairs cholesterol metabolism and mitochondrial functionPossible reference: Jennings, MJ. et al. (2021) Intracellular Lipid Accumulation and Mitochondrial Dysfunction Accompanies Endoplasmic Reticulum Stress Caused by Loss of the Co-chaperone DNAJC3., Front Cell Dev Biol, PMID 34692675
PXD027366 Dataset with its publication pending (from PRIDE)Dataset title: Myxopyronin B inhibits growth of a Fidaxomicin-resistant Clostridioides difficile isolate and interferes with toxin synthesisPossible reference: Brauer, M. et al. (2022) Myxopyronin B inhibits growth of a Fidaxomicin-resistant Clostridioides difficile isolate and interferes with toxin synthesis., Gut Pathog, PMID 34991700
PXD027360 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic analysis of Nrf2 knocked down in HT29Possible reference: Cheraghi, O. et al. (2022) The effect of Nrf2 deletion on the proteomic signature in a human colorectal cancer cell line., BMC Cancer, PMID 36100939
PXD027358 Dataset with its publication pending (from PRIDE)Dataset title: A streamlined data analysis pipeline for the identification of sites of citrullinationPossible reference: Maurais, AJ. et al. (2021) A Streamlined Data Analysis Pipeline for the Identification of Sites of Citrullination., Biochemistry, PMID 34491035
PXD027350 Dataset with its publication pending (from PRIDE)Dataset title: PLCG2 regulates endocannabinoid and eicosanoid networks in innate immune cellsPossible reference: Jing, H. et al. (2021) Phospholipase Cγ2 regulates endocannabinoid and eicosanoid networks in innate immune cells., Proc Natl Acad Sci U S A, PMID 34607960
PXD027318 Dataset with its publication pending (from PRIDE)Dataset title: Senescence Biomarker Discovery by LC-MS-based ProteomicsPossible reference: Lynn, KS. et al. (2019) Vegetable Signatures Derived from Human Urinary Metabolomic Data in Controlled Feeding Studies., J Proteome Res, PMID 30517004
PXD027312 no publication (from MassIVE)Dataset title: ZNF768 links oncogenic RAS to cellular senescencePossible reference: Villot, R. et al. (2021) ZNF768 links oncogenic RAS to cellular senescence., Nat Commun, PMID 34404770
PXD027311 no publication (from MassIVE)Dataset title: Drone honey bees are disproportionately sensitive to abiotic stressors relative to workers, despite expressing high levels of stress response proteinsPossible reference: McAfee, A. et al. (2022) Drone honey bees are disproportionately sensitive to abiotic stressors despite expressing high levels of stress response proteins., Commun Biol, PMID 35177754
PXD027301 Dataset with its publication pending (from PRIDE)Dataset title: A new mass spectral library for high-coverage and reproducible analysis of the Plasmodium falciparum-infected red blood cell proteomePossible reference: Siddiqui, G. et al. (2022) A new mass spectral library for high-coverage and reproducible analysis of the Plasmodium falciparum-infected red blood cell proteome., Gigascience, PMID 35254426
PXD027297 Dataset with its publication pending (from PRIDE)Dataset title: Proteome-Level Functional Redundancy in the Human Gut MicrobiomePossible reference: Li, L. et al. (2023) Revealing proteome-level functional redundancy in the human gut microbiome using ultra-deep metaproteomics., Nat Commun, PMID 37301875
PXD027294 Dataset with its publication pending (from PRIDE)Dataset title: Identification of novel salivary candidate protein biomarkers for tuberculosis diagnosis: a preliminary biomarker discovery study.Possible reference: Mutavhatsindi, H. et al. (2021) Identification of novel salivary candidate protein biomarkers for tuberculosis diagnosis: A preliminary biomarker discovery study., Tuberculosis (Edinb), PMID 34371310
PXD027291 Dataset with its publication pending (from jPOST)Dataset title: CXCL5 secreted from macrophages during cold exposure mediates white adipose tissue browningPossible reference: Lee, D. et al. (2021) CXCL5 secreted from macrophages during cold exposure mediates white adipose tissue browning., J Lipid Res, PMID 34537202
PXD027283 Dataset with its publication pending (from PRIDE)Dataset title: Identification of molecular machinery mediating ER to lipid droplet protein targetingPossible reference: Song, J. et al. (2022) Identification of two pathways mediating protein targeting from ER to lipid droplets., Nat Cell Biol, PMID 36050470
PXD027278 Dataset with its publication pending (from PRIDE)Dataset title: Candida albicans CUG codon translation, comparison with other yeastsPossible reference: Zhou, XL. et al. (2013) Aminoacylation and translational quality control strategy employed by leucyl-tRNA synthetase from a human pathogen with genetic code ambiguity., Nucleic Acids Res, PMID 23969415
PXD027265 Dataset with its publication pending (from PRIDE)Dataset title: A universal peptide matrix interactomics approach to disclose motif dependent protein bindingPossible reference: Ramberger, E. et al. (2021) A Universal Peptide Matrix Interactomics Approach to Disclose Motif-Dependent Protein Binding., Mol Cell Proteomics, PMID 34391889
PXD027250 Dataset with its publication pending (from PRIDE)Dataset title: Identification of potential of new therapeutic approaches for JAK2 V617F mutant patientsPossible reference: Pearson, S. et al. (2023) Identification of curaxin as a potential new therapeutic for JAK2 V617F mutant patients., PLoS One, PMID 37253035
PXD027248 Dataset with its publication pending (from PRIDE)Dataset title: Prior Signal Acquisition Software Versions For Orbitrap Underestimate Low Isobaric Mass Tag Intensities, Without Detriment to Differential Abundance ExperimentsPossible reference: Smith, TS. et al. (2022) Prior Signal Acquisition Software Versions for Orbitrap Underestimate Low Isobaric Mass Tag Intensities, Without Detriment to Differential Abundance Experiments., ACS Meas Sci Au, PMID 35726249
PXD027241 Dataset with its publication pending (from PRIDE)Dataset title: A new mass spectral library for high-coverage and reproducible analysis of the Plasmodium falciparum-infected red blood cell proteomePossible reference: Siddiqui, G. et al. (2022) A new mass spectral library for high-coverage and reproducible analysis of the Plasmodium falciparum-infected red blood cell proteome., Gigascience, PMID 35254426
PXD027238 Dataset with its publication pending (from PRIDE)Dataset title: Identifying Specific Protein Interactors of Nucleosomes Carrying Methylated Histones using Quantitative Mass SpectrometryPossible reference: Tvardovskiy, A. et al. (2022) Identifying Specific Protein Interactors of Nucleosomes Carrying Methylated Histones Using Quantitative Mass Spectrometry., Methods Mol Biol, PMID 35733023
PXD027229 Dataset with its publication pending (from PRIDE)Dataset title: Characterisation of the free and membrane-associated fractions of the thylakoid lumen proteome in Arabidopsis thalianaPossible reference: Gollan, PJ. et al. (2021) Characterization of the Free and Membrane-Associated Fractions of the Thylakoid Lumen Proteome in Arabidopsis thaliana., Int J Mol Sci, PMID 34360890
PXD027205 Dataset with its publication pending (from PRIDE)Dataset title: lysine acetylation and succinylation in Streptomyces coelicolorPossible reference: Zhang, H. et al. (2019) ScCobB2-mediated Lysine Desuccinylation Regulates Protein Biosynthesis and Carbon Metabolism in Streptomyces coelicolor., Mol Cell Proteomics, PMID 31337674
PXD027195 Dataset with its publication pending (from PRIDE)Dataset title: Conserved exchange of paralog proteins during neuronal differentiationPossible reference: Schmidt, S. et al. (2014) Function and regulation of the Rho guanine nucleotide exchange factor Trio., Small GTPases, PMID 24987837
PXD027187 Dataset with its publication pending (from PRIDE)Dataset title: ATR inhibition enables complete tumour regression in ALK-driven NB mouse modelsPossible reference: Szydzik, J. et al. (2021) ATR inhibition enables complete tumour regression in ALK-driven NB mouse models., Nat Commun, PMID 34819497
PXD027156 Dataset with its publication pending (from PRIDE)Dataset title: Cysteamine inhibits glycine utilisation and disrupts virulence in Pseudomonas aeruginosaPossible reference: Fraser-Pitt, DJ. et al. (2021) Cysteamine Inhibits Glycine Utilisation and Disrupts Virulence in Pseudomonas aeruginosa., Front Cell Infect Microbiol, PMID 34631600
PXD027148 Dataset with its publication pending (from PRIDE)Dataset title: Impacts of Ser/Thr protein kinase Stk1 on proteome, twitching motility and competitive advantage in Pseudomonas aeruginosaImpacts of Ser/Thr protein kinase Stk1 on proteome, twitching motility and competitive advantage in Pseudomonas aeruginosaPossible reference: Zhu, X. et al. (2021) Impacts of Ser/Thr Protein Kinase Stk1 on the Proteome, Twitching Motility, and Competitive Advantage in Pseudomonas aeruginosa., Front Microbiol, PMID 34733256
PXD027134 Dataset with its publication pending (from PanoramaPublic)Dataset title: The addition of FAIMS Increases Targeted Proteomics Sensitivity from FFPE Tumor BiopsiesPossible reference: Sweet, S. et al. (2022) The addition of FAIMS increases targeted proteomics sensitivity from FFPE tumor biopsies., Sci Rep, PMID 35974054
PXD027121 Dataset with its publication pending (from PRIDE)Dataset title: In vivo structure-function analysis and redox interactomes of Leishmania tarentolae ErvPossible reference: Turra, GL. et al. (2021) In Vivo Structure-Function Analysis and Redox Interactomes of Leishmania tarentolae Erv., Microbiol Spectr, PMID 34585988
PXD027118 Dataset with its publication pending (from jPOST)Dataset title: Antibiotic-like Activity of Atomic Layer Boron Nitride for Combating Resistant BacteriaPossible reference: Pan, Y. et al. (2022) Antibiotic-Like Activity of Atomic Layer Boron Nitride for Combating Resistant Bacteria., ACS Nano, PMID 35511445
PXD027113 no publication (from MassIVE)Dataset title: Profiling of Pancreatic Ductal Adenocarcinoma using serum lipidomicsPossible reference: Amrutkar, M. et al. (2025) Global metabolomic profiling of tumor tissue and paired serum samples to identify biomarkers for response to neoadjuvant FOLFIRINOX treatment of human pancreatic cancer., Mol Oncol, PMID 39545923
PXD027110 Dataset with its publication pending (from PRIDE)Dataset title: Surfaceome proteomic of glioblastoma revealed potential targets for immunotherapyPossible reference: Rose, M. et al. (2021) Surfaceome Proteomic of Glioblastoma Revealed Potential Targets for Immunotherapy., Front Immunol, PMID 34646273
PXD027107 no publication (from MassIVE)Dataset title: Bone collagen from Australian marsupials for ZooMS peptide markersPossible reference: Peters, C. et al. (2021) Species identification of Australian marsupials using collagen fingerprinting., R Soc Open Sci, PMID 34729210
PXD027105 Dataset with its publication pending (from PRIDE)Dataset title: Evidence of immune modulators in the secretome of the equine tapeworm Anoplocephala perfoliataPossible reference: Wititkornkul, B. et al. (2021) Evidence of Immune Modulators in the Secretome of the Equine Tapeworm Anoplocephala perfoliata., Pathogens, PMID 34358062
PXD027098 Dataset with its publication pending (from PRIDE)Dataset title: Post-translational responses to elevated c-di-GMP levels in Pseudomonas aeruginosaPossible reference: Petrova, OE. et al. (2012) Dispersion by Pseudomonas aeruginosa requires an unusual posttranslational modification of BdlA., Proc Natl Acad Sci U S A, PMID 23012421
PXD027081 Dataset with its publication pending (from jPOST)Dataset title: Reference Proteome-Based Characterization of Liver Cancer Possible reference: Sanyal, AJ. et al. (2023) Defining the serum proteomic signature of hepatic steatosis, inflammation, ballooning and fibrosis in non-alcoholic fatty liver disease., J Hepatol, PMID 36528237
PXD027080 no publication (from MassIVE)Dataset title: Protein kinase signalling at the Leishmania kinetochore captured by XL-BioIDPossible reference: Geoghegan, V. et al. (2022) CLK1/CLK2-driven signalling at the Leishmania kinetochore is captured by spatially referenced proximity phosphoproteomics., Commun Biol, PMID 36437406
PXD027060 no publication (from MassIVE)Dataset title: Long-lived mitochondrial cristae proteins in mouse heart and brainPossible reference: Bomba-Warczak, E. et al. (2021) Long-lived mitochondrial cristae proteins in mouse heart and brain., J Cell Biol, PMID 34259807
PXD027057 Dataset with its publication pending (from jPOST)Dataset title: Phosphoproteomics of Vicia GCPs treated with ABAPossible reference: Hayashi, Y. et al. (2021) Identification of Abscisic Acid-Dependent Phosphorylated Basic Helix-Loop-Helix Transcription Factors in Guard Cells of Vicia faba by Mass Spectrometry., Front Plant Sci, PMID 34987530
PXD027055 Dataset with its publication pending (from PRIDE)Dataset title: Early and late processes driving NET formation, and the autocrine/paracrine role of endogenous RAGE ligandsPossible reference: Tatsiy, O. et al. (2021) Early and Late Processes Driving NET Formation, and the Autocrine/Paracrine Role of Endogenous RAGE Ligands., Front Immunol, PMID 34616390
PXD027049 Dataset with its publication pending (from PRIDE)Dataset title: GM-CSF nitration is a new driver of myeloid suppressor cell activity in tumorsPossible reference: Calì, B. et al. (2021) GM-CSF Nitration Is a New Driver of Myeloid Suppressor Cell Activity in Tumors., Front Immunol, PMID 34675917
PXD027048 no publication (from MassIVE)Dataset title: Optimized liquid and gas phase fractionation increases HLA-peptidome coverage for primary cell and tissue samplesPossible reference: Klaeger, S. et al. (2021) Optimized Liquid and Gas Phase Fractionation Increases HLA-Peptidome Coverage for Primary Cell and Tissue Samples., Mol Cell Proteomics, PMID 34391888
PXD027038 Dataset with its publication pending (from PRIDE)Dataset title: Colobanthus quitensis differential proteomicsPossible reference: Bertini, L. et al. (2021) What Antarctic Plants Can Tell Us about Climate Changes: Temperature as a Driver for Metabolic Reprogramming., Biomolecules, PMID 34439761
PXD027030 Dataset with its publication pending (from PRIDE)Dataset title: Time-series transcriptomics and proteomics reveal alternative modes to decode p53 oscillationsPossible reference: Jiménez, A. et al. (2022) Time-series transcriptomics and proteomics reveal alternative modes to decode p53 oscillations., Mol Syst Biol, PMID 35285572
PXD027026 Dataset with its publication pending (from PRIDE)Dataset title: Two related coactivator complexes SAGA and ATAC control embryonic stem cell self-renewal through two different acetyltransferase-independent mechanismsPossible reference: Fischer, V. et al. (2021) The related coactivator complexes SAGA and ATAC control embryonic stem cell self-renewal through acetyltransferase-independent mechanisms., Cell Rep, PMID 34433046
PXD027019 no publication (from MassIVE)Dataset title: Vitamin C differentially impacts the serum proteome profile in female and male micePossible reference: Aumailley, L. et al. (2021) Vitamin C Differentially Impacts the Serum Proteome Profile in Female and Male Mice., J Proteome Res, PMID 34643398
PXD027018 Dataset with its publication pending (from jPOST)Dataset title: Precipitate supported thermal proteome profilingPossible reference: Wang, Q. et al. (2012) Regulation of enzyme activity of alcohol dehydrogenase through its interactions with pyruvate-ferredoxin oxidoreductase in Thermoanaerobacter tengcongensis., Biochem Biophys Res Commun, PMID 22222371
PXD027017 Dataset with its publication pending (from PRIDE)Dataset title: Indentification of CaMKK2-binding proteins in 293T cellsPossible reference: Gee, MH. et al. (2018) Antigen Identification for Orphan T Cell Receptors Expressed on Tumor-Infiltrating Lymphocytes., Cell, PMID 29275860
PXD027007 Dataset with its publication pending (from PRIDE)Dataset title: Crotonylation of GAPDH regulates human embryonic stem cell endodermal lineage differentiation and metabolic switchPossible reference: Zhang, J. et al. (2023) Crotonylation of GAPDH regulates human embryonic stem cell endodermal lineage differentiation and metabolic switch., Stem Cell Res Ther, PMID 37013624
PXD027006 Dataset with its publication pending (from PRIDE)Dataset title: Allotypic variation in antigen processing controls antigenic peptide generation from SARS-CoVâ€2 S1 Spike GlycoproteinPossible reference: Stamatakis, G. et al. (2021) Allotypic variation in antigen processing controls antigenic peptide generation from SARS-CoV-2 S1 spike glycoprotein., J Biol Chem, PMID 34688668
PXD026998 Dataset with its publication pending (from PRIDE)Dataset title: Pro-inflammatory Beta Cell Small Extracellular Vesicles Induce Beta Cell Failure Through Activation of the CXCL10/CXCR3 Axis in DiabetesPossible reference: Javeed, N. et al. (2021) Pro-inflammatory β cell small extracellular vesicles induce β cell failure through activation of the CXCL10/CXCR3 axis in diabetes., Cell Rep, PMID 34433033
PXD026991 Dataset with its publication pending (from PRIDE)Dataset title: SUPT3H-less SAGA coactivator can assemble and function without significantly perturbing RNA polymerase II transcription in mammalian cellsPossible reference: Fischer, V. et al. (2022) SUPT3H-less SAGA coactivator can assemble and function without significantly perturbing RNA polymerase II transcription in mammalian cells., Nucleic Acids Res, PMID 35871303
PXD026982 Dataset with its publication pending (from PRIDE)Dataset title: Mildly pathogenic Rickettsia-macrophage interactionsPossible reference: Curto, P. et al. (2021) Spotted Fever Group Rickettsia Trigger Species-Specific Alterations in Macrophage Proteome Signatures with Different Impacts in Host Innate Inflammatory Responses., Microbiol Spectr, PMID 34935429
PXD026978 Dataset with its publication pending (from PRIDE)Dataset title: Sex-specific social behavior and amygdala proteomic deficits in Foxp2+/- mutant micePossible reference: Herrero, MJ. et al. (2021) Sex-Specific Social Behavior and Amygdala Proteomic Deficits in Foxp2 +/- Mutant Mice., Front Behav Neurosci, PMID 34421555
PXD026950 Dataset with its publication pending (from PRIDE)Dataset title: iTRAQ-based quantitative serum proteomic analysis in ischemic stroke patientsPossible reference: Sharma, R. et al. (2015) Proteomic Signature of Endothelial Dysfunction Identified in the Serum of Acute Ischemic Stroke Patients by the iTRAQ-Based LC-MS Approach., J Proteome Res, PMID 25807139
PXD026921 Dataset with its publication pending (from jPOST)Dataset title: Jiang et al 2021 Ism1-his protein mass specPossible reference: Yi, F. et al. (2021) The deacetylation-phosphorylation regulation of SIRT2-SMC1A axis as a mechanism of antimitotic catastrophe in early tumorigenesis., Sci Adv, PMID 33627431
PXD026919 Dataset with its publication pending (from iProX)Dataset title: Corosolic Acid inhibits bladder cancerPossible reference: Cui, A. et al. (2023) Quantitative transcriptomic and proteomic analysis reveals corosolic acid inhibiting bladder cancer via suppressing cell cycle and inducing mitophagy in vitro and in vivo., Toxicol Appl Pharmacol, PMID 37939859
PXD026917 no publication (from MassIVE)Dataset title: Fused in sarcoma regulates DNA replication timing and progressionPossible reference: Jia, W. et al. (2021) Fused in sarcoma regulates DNA replication timing and kinetics., J Biol Chem, PMID 34375640
PXD026894 Dataset with its publication pending (from PRIDE)Dataset title: Phosphorylation regulates arginine-rich RNA-binding protein solubility and oligomerizationPossible reference: Kundinger, SR. et al. (2021) Phosphorylation regulates arginine-rich RNA-binding protein solubility and oligomerization., J Biol Chem, PMID 34673031
PXD026893 Dataset with its publication pending (from PRIDE)Dataset title: p53 forms redox-dependent protein-protein interactions through cysteine 277Possible reference: Shi, T. et al. (2021) p53 Forms Redox-Dependent Protein-Protein Interactions through Cysteine 277., Antioxidants (Basel), PMID 34679713
PXD026889 Dataset with its publication pending (from PRIDE)Dataset title: The bZIP transcription factor HapX is post-translationally regulated to control iron homeostasis in Aspergillus fumigatusPossible reference: López-Berges, MS. et al. (2021) The bZIP Transcription Factor HapX Is Post-Translationally Regulated to Control Iron Homeostasis in Aspergillus fumigatus., Int J Mol Sci, PMID 34299357
PXD026887 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic profiling of astrocytic O-GlcNAc transferase related proteins in the mPFCPossible reference: Fan, J. et al. (2021) Proteomic Profiling of Astrocytic O-GlcNAc Transferase-Related Proteins in the Medial Prefrontal Cortex., Front Mol Neurosci, PMID 34803603
PXD026872 Dataset with its publication pending (from PRIDE)Dataset title: A YAP/TAZ-TEAD signaling module links endothelial nutrient acquisition to angiogenic growthPossible reference: Ong, YT. et al. (2022) A YAP/TAZ-TEAD signalling module links endothelial nutrient acquisition to angiogenic growth., Nat Metab, PMID 35726026
PXD026859 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic analysis of filaggrin insufficient keratinocytes and secreted exosomes.Possible reference: Kobiela, A. et al. (2024) Keratinocyte-derived small extracellular vesicles supply antigens for CD1a-resticted T cells and promote their type 2 bias in the context of filaggrin insufficiency., Front Immunol, PMID 38585273
PXD026857 Dataset with its publication pending (from PRIDE)Dataset title: IRS1 phosphorylation underlies the non-stochastic probability of cancer cells to persist during EGFR inhibition therapyPossible reference: Jacob Berger, A. et al. (2021) IRS1 phosphorylation underlies the non-stochastic probability of cancer cells to persist during EGFR inhibition therapy., Nat Cancer, PMID 35121883
PXD026852 Dataset with its publication pending (from PRIDE)Dataset title: Targeting conserved N-glycosylation eradicates SARS-CoV-2 variants infectionPossible reference: Huang, HC. et al. (2021) Targeting conserved N-glycosylation blocks SARS-CoV-2 variant infection in vitro., EBioMedicine, PMID 34839261
PXD026846 Dataset with its publication pending (from iProX)Dataset title: N-terminomic Analysis of Mycobacterium tuberculosis H37RvPossible reference: Shi, J. et al. (2022) Deep N-terminomics of Mycobacterium tuberculosis H37Rv extensively correct annotated encoding genes., Genomics, PMID 34915127
PXD026844 Dataset with its publication pending (from PRIDE)Dataset title: IRS1 phosphorylation underlies the non-stochastic probability of cancer cells to persist during EGFR inhibition therapyPossible reference: Jacob Berger, A. et al. (2021) IRS1 phosphorylation underlies the non-stochastic probability of cancer cells to persist during EGFR inhibition therapy., Nat Cancer, PMID 35121883
PXD026843 Dataset with its publication pending (from PRIDE)Dataset title: The E3 ubiquitin ligase RNF115 regulates phagosome maturation and host response to infectionPossible reference: Bilkei-Gorzo, O. et al. (2022) The E3 ubiquitin ligase RNF115 regulates phagosome maturation and host response to bacterial infection., EMBO J, PMID 36281581
PXD026842 Dataset with its publication pending (from PRIDE)Dataset title: IRS1 phosphorylation underlies the non-stochastic probability of cancer cells to persist during EGFR inhibition therapyPossible reference: Jacob Berger, A. et al. (2021) IRS1 phosphorylation underlies the non-stochastic probability of cancer cells to persist during EGFR inhibition therapy., Nat Cancer, PMID 35121883
PXD026828 Dataset with its publication pending (from PRIDE)Dataset title: Nascent Ribo-Seq measures ribosomal loading time and reveals kinetic impact on ribosome densityPossible reference: Schott, J. et al. (2021) Nascent Ribo-Seq measures ribosomal loading time and reveals kinetic impact on ribosome density., Nat Methods, PMID 34480152
PXD026824 Dataset with its publication pending (from PRIDE)Dataset title: IRS1 phosphorylation underlies the non-stochastic probability of cancer cells to persist during EGFR inhibition therapyPossible reference: Jacob Berger, A. et al. (2021) IRS1 phosphorylation underlies the non-stochastic probability of cancer cells to persist during EGFR inhibition therapy., Nat Cancer, PMID 35121883
PXD026821 Dataset with its publication pending (from PRIDE)Dataset title: Integrated liver and plasma proteomics in obese mice reveals complex metabolic and immune regulationPossible reference: Stocks, B. et al. (2022) Integrated Liver and Plasma Proteomics in Obese Mice Reveals Complex Metabolic Regulation., Mol Cell Proteomics, PMID 35093608
PXD026812 no publication (from MassIVE)Dataset title: Proteomic analysis of bacteriophage fD1 infecting Yersinia pestisPossible reference: Skurnik, M. et al. (2021) Bacteriophages fEV-1 and fD1 Infect Yersinia pestis., Viruses, PMID 34372590
PXD026811 no publication (from MassIVE)Dataset title: Proteomic analysis of bacteriophage fEV-1 infecting Yersinia pestisPossible reference: Skurnik, M. et al. (2021) Bacteriophages fEV-1 and fD1 Infect Yersinia pestis., Viruses, PMID 34372590
PXD026810 no publication (from MassIVE)Dataset title: Hemileia_vastatrix_descriptive analysisPossible reference: Cristancho, MA. et al. (2014) Annotation of a hybrid partial genome of the coffee rust (Hemileia vastatrix) contributes to the gene repertoire catalog of the Pucciniales., Front Plant Sci, PMID 25400655
PXD026809 no publication (from MassIVE)Dataset title: Ulengin-Talkish_calcineurin_PI4KA_2021Possible reference: Ulengin-Talkish, I. et al. (2021) Palmitoylation targets the calcineurin phosphatase to the phosphatidylinositol 4-kinase complex at the plasma membrane., Nat Commun, PMID 34663815
PXD026790 Dataset with its publication pending (from PRIDE)Dataset title: Evaluation of mass spectrometry MS/MS spectra for the presence of isopeptide crosslinked peptidesPossible reference: Schopfer, LM. et al. (2021) Evaluation of mass spectrometry MS/MS spectra for the presence of isopeptide crosslinked peptides., PLoS One, PMID 34242352
PXD026789 Dataset with its publication pending (from PRIDE)Dataset title: Calcitriol promotes differentiation of glioma stem-like cells and increases their susceptibility to temozolomidePossible reference: Gerstmeier, J. et al. (2021) Calcitriol Promotes Differentiation of Glioma Stem-Like Cells and Increases Their Susceptibility to Temozolomide., Cancers (Basel), PMID 34298790
PXD026781 Dataset with its publication pending (from PRIDE)Dataset title: Fungal metaproteome of a fermented maize doughPossible reference: Cárdenas, C. et al. (2014) Protein extraction method for the proteomic study of a Mexican traditional fermented starchy food., J Proteomics, PMID 25009144
PXD026776 Dataset with its publication pending (from PRIDE)Dataset title: Profiling of glioma C6 and astrocytes rat cell lines before and after co-cultivation.Possible reference: Gerhartl, A. et al. (2020) The pivotal role of micro-environmental cells in a human blood-brain barrier in vitro model of cerebral ischemia: functional and transcriptomic analysis., Fluids Barriers CNS, PMID 32138745
PXD026774 Dataset with its publication pending (from PRIDE)Dataset title: Rapid factor depletion highlights intricacies of nucleoplasmic RNA degradationPossible reference: Gockert, M. et al. (2022) Rapid factor depletion highlights intricacies of nucleoplasmic RNA degradation., Nucleic Acids Res, PMID 35048984
PXD026773 Dataset with its publication pending (from PRIDE)Dataset title: Integrated analysis of proteomics on rat hearts with aging and hypertensionPossible reference: Shay, JW. et al. (2016) Abstracts from the 3rd International Genomic Medicine Conference (3rd IGMC 2015) : Jeddah, Kingdom of Saudi Arabia. 30 November - 3 December 2015., BMC Genomics, PMID 27454254
PXD026763 Dataset with its publication pending (from PRIDE)Dataset title: Human MDA-MB-231 breast cancer cells overexpressing miR-183-5p and its isomiRsPossible reference: Telonis, AG. et al. (2015) Beyond the one-locus-one-miRNA paradigm: microRNA isoforms enable deeper insights into breast cancer heterogeneity., Nucleic Acids Res, PMID 26400174
PXD026743 Dataset with its publication pending (from PRIDE)Dataset title: A systematic analysis of Trypanosoma brucei chromatin factors identifies novel protein interaction networks associated with sites of transcription initiation and terminationPossible reference: Staneva, DP. et al. (2021) A systematic analysis of Trypanosoma brucei chromatin factors identifies novel protein interaction networks associated with sites of transcription initiation and termination., Genome Res, PMID 34407985
PXD026730 Dataset with its publication pending (from PRIDE)Dataset title: Global profiling of phosphorylation-dependent changes in cysteine reactivityPossible reference: Kemper, EK. et al. (2022) Global profiling of phosphorylation-dependent changes in cysteine reactivity., Nat Methods, PMID 35228727
PXD026725 Dataset with its publication pending (from PRIDE)Dataset title: RNA-bound PGC-1α controls gene expression in liquid-like nuclear condensatesPossible reference: Pérez-Schindler, J. et al. (2021) RNA-bound PGC-1α controls gene expression in liquid-like nuclear condensates., Proc Natl Acad Sci U S A, PMID 34465622
PXD026724 Dataset with its publication pending (from PRIDE)Dataset title: Cavin3 released from caveolae interacts with BRCA1 to regulate the cellular stress responsePossible reference: McMahon, KA. et al. (2021) Cavin3 released from caveolae interacts with BRCA1 to regulate the cellular stress response., Elife, PMID 34142659
PXD026715 Dataset with its publication pending (from PRIDE)Dataset title: COPI membrane interactome by ultraID-MSPossible reference: Vonderstein, K. et al. (2018) Viperin Targets Flavivirus Virulence by Inducing Assembly of Noninfectious Capsid Particles., J Virol, PMID 29046456
PXD026704 Dataset with its publication pending (from PRIDE)Dataset title: Coating and corruption of human neutrophils by bacterial outer membrane vesiclesPossible reference: du Teil Espina, M. et al. (2022) Coating and Corruption of Human Neutrophils by Bacterial Outer Membrane Vesicles., Microbiol Spectr, PMID 36000865
PXD026700 no publication (from MassIVE)Dataset title: Growth Rate-Dependent Coordination of Catabolism and Anabolism in the Archaeon Methanococcus maripaludis under Phosphate Limitation Possible reference: Gu, W. et al. (2022) Growth rate-dependent coordination of catabolism and anabolism in the archaeon Methanococcus maripaludis under phosphate limitation., ISME J, PMID 35780255
PXD026680 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic and Metabolomic Profiling of Acute and Chronic Stress Events Associated with Military ExercisesPossible reference: McKetney, J. et al. (2022) Proteomic and metabolomic profiling of acute and chronic stress events associated with military exercises., Mol Omics, PMID 34860218
PXD026674 Dataset with its publication pending (from PRIDE)Dataset title: Arabidopsis MORC proteins function in the efficient establishment of RNA directed DNA methylationPossible reference: Brabbs, TR. et al. (2013) The stochastic silencing phenotype of Arabidopsis morc6 mutants reveals a role in efficient RNA-directed DNA methylation., Plant J, PMID 23675613
PXD026671 Dataset with its publication pending (from PRIDE)Dataset title: Integrated transcriptomic and proteomic analysis of Tritipyrum provides insights into the molecular basis of salt tolerancePossible reference: Yang, R. et al. (2021) Integrated transcriptomic and proteomic analysis of Tritipyrum provides insights into the molecular basis of salt tolerance., PeerJ, PMID 35036157
PXD026660 Dataset with its publication pending (from PRIDE)Dataset title: Plasmodiophora brassicae-triggered cell enlargement and loss of cellular integrity in root systems is mediated by pectin demethylation.Possible reference: Stefanowicz, K. et al. (2021) Plasmodiophora brassicae-Triggered Cell Enlargement and Loss of Cellular Integrity in Root Systems Are Mediated by Pectin Demethylation., Front Plant Sci, PMID 34394168
PXD026656 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic analysis identified age-associated prognostic biomarkers in pneumonia-derived pediatric sepsisPossible reference: Luo, T. et al. (2022) Proteomic analysis identified potential age-associated prognostic biomarkers in pneumonia-derived paediatric sepsis., Proteomics Clin Appl, PMID 34822739
PXD026653 Dataset with its publication pending (from PRIDE)Dataset title: Anaerobic peroxisomes in Entamoeba histolytica metabolize myo-inositolPossible reference: Verner, Z. et al. (2021) Anaerobic peroxisomes in Entamoeba histolytica metabolize myo-inositol., PLoS Pathog, PMID 34780573
PXD026645 Dataset with its publication pending (from PRIDE)Dataset title: Targeting DDR1 and DDR2 overcomes matrix-mediated melanoma cell adaptation to BRAF-targeted therapyPossible reference: Berestjuk, I. et al. (2022) Targeting Discoidin Domain Receptors DDR1 and DDR2 overcomes matrix-mediated tumor cell adaptation and tolerance to BRAF-targeted therapy in melanoma., EMBO Mol Med, PMID 34957688
PXD026633 Dataset with its publication pending (from PRIDE)Dataset title: A small RNA regulates pprM, a modulator of pleiotropic proteins promoting DNA repair, in Deinococcus radiodurans under ionizing radiationPossible reference: Villa, JK. et al. (2021) A small RNA regulates pprM, a modulator of pleiotropic proteins promoting DNA repair, in Deinococcus radiodurans under ionizing radiation., Sci Rep, PMID 34155239
PXD026630 Dataset with its publication pending (from PRIDE)Dataset title: Mapping proteome changes in recurrent colon cancer reveals a significant immune system signaturePossible reference: Berle, M. et al. (2022) Mapping Proteome Changes in Microsatellite Stable, Recurrent Colon Cancer Reveals a Significant Immune System Signature., Cancer Genomics Proteomics, PMID 35181583
PXD026626 no publication (from MassIVE)Dataset title: Pathogenic BRCA1 variants disrupt PLK1-regulation of mitotic spindle orientation and luminal differentiationPossible reference: He, Z. et al. (2022) Pathogenic BRCA1 variants disrupt PLK1-regulation of mitotic spindle orientation., Nat Commun, PMID 35459234
PXD026622 Dataset with its publication pending (from PRIDE)Dataset title: The RNA-binding protein RBP42 regulates cellular energy metabolism in mammalian-infective Trypanosoma bruceiPossible reference: Das, A. et al. (2023) The RNA-binding protein RBP42 regulates cellular energy metabolism in mammalian-infective Trypanosoma brucei., mSphere, PMID 37581443
PXD026620 no publication (from MassIVE)Dataset title: Cardiolipin remodeling enables protein crowding in the inner mitochondrial membranePossible reference: Xu, Y. et al. (2021) Cardiolipin remodeling enables protein crowding in the inner mitochondrial membrane., EMBO J, PMID 34661298
PXD026619 Dataset with its publication pending (from PRIDE)Dataset title: Dynamic character displacement among a pair of bacterial phyllosphere commensals in situPossible reference: Hemmerle, L. et al. (2022) Dynamic character displacement among a pair of bacterial phyllosphere commensals in situ., Nat Commun, PMID 35595740
PXD026605 Dataset with its publication pending (from PRIDE)Dataset title: Listeria monocytogenes utilizes the ClpP1/2 proteolytic machinery for fine-tuned substrate degradation at elevated temperaturesPossible reference: Balogh, D. et al. (2022) Listeria monocytogenes utilizes the ClpP1/2 proteolytic machinery for fine-tuned substrate degradation at elevated temperatures., RSC Chem Biol, PMID 35866172
PXD026602 Dataset with its publication pending (from iProX)Dataset title: Proteome of Pugionium cornutumPossible reference: Wang, P. et al. (2023) Understanding the response in Pugionium cornutum (L.) Gaertn. seedling leaves under drought stress using transcriptome and proteome integrated analysis., PeerJ, PMID 37033724
PXD026599 Dataset with its publication pending (from PRIDE)Dataset title: A phosphoproteomic approach reveals that PKD3 controls PKA-mediated glucose and tyrosine metabolismPossible reference: Loza-Valdes, A. et al. (2021) A phosphoproteomic approach reveals that PKD3 controls PKA-mediated glucose and tyrosine metabolism., Life Sci Alliance, PMID 34145024
PXD026572 no publication (from MassIVE)Dataset title: Mouse Intestinal HMGCR complexPossible reference: Zhang, L. et al. (2023) High-Carbohydrate Diet Consumption Poses a More Severe Liver Cholesterol Deposition than a High-Fat and High-Calorie Diet in Mice., Int J Mol Sci, PMID 37834148
PXD026570 Dataset with its publication pending (from PRIDE)Dataset title: Extensive Three-Dimensional Intratumor Proteomic Heterogeneity Revealed by Multiregion Sampling in High-Grade Serous Ovarian Tumor SpecimensPossible reference: Hunt, AL. et al. (2021) Extensive three-dimensional intratumor proteomic heterogeneity revealed by multiregion sampling in high-grade serous ovarian tumor specimens., iScience, PMID 34278265
PXD026541 Dataset with its publication pending (from PRIDE)Dataset title: Chromatin enrichment for Proteomics in Plants (ChEP-P) implicates the histone reader ALFIN-LIKE 6 in Jasmonate signalingPossible reference: Vélez-Bermúdez, IC. et al. (2021) Chromatin enrichment for proteomics in plants (ChEP-P) implicates the histone reader ALFIN-LIKE 6 in jasmonate signalling., BMC Genomics, PMID 34809577
PXD026539 Dataset with its publication pending (from PRIDE)Dataset title: CDK4/6 inhibition promotes anti-tumor immunityPossible reference: Goel, S. et al. (2017) CDK4/6 inhibition triggers anti-tumour immunity., Nature, PMID 28813415
PXD026513 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic study of Desulfovibrio ferrophilus IS5 reveals overexpressed extracellular multi-heme cytochrome associated with severe microbiologically influenced corrosionPossible reference: Chatterjee, M. et al. (2021) Proteomic study of Desulfovibrio ferrophilus IS5 reveals overexpressed extracellular multi-heme cytochrome associated with severe microbiologically influenced corrosion., Sci Rep, PMID 34326431
PXD026504 Dataset with its publication pending (from iProX)Dataset title: Proteome of pig uterine luminal fluidPossible reference: He, Y. et al. (2022) iTRAQ-based quantitative proteomic analysis of porcine uterine fluid during pre-implantation period of pregnancy., J Proteomics, PMID 35354084
PXD026484 Dataset with its publication pending (from PRIDE)Dataset title: Acute depletion of CTCF rewires genome-wide chromatin accessibilityPossible reference: Xu, B. et al. (2021) Acute depletion of CTCF rewires genome-wide chromatin accessibility., Genome Biol, PMID 34429148
PXD026473 no publication (from MassIVE)Dataset title: Proximity labeling identifies a repertoire of site-specific R-loop modulatorsPossible reference: Yan, Q. et al. (2022) Proximity labeling identifies a repertoire of site-specific R-loop modulators., Nat Commun, PMID 35013239
PXD026467 Dataset with its publication pending (from PRIDE)Dataset title: Analysis of the effect of Bacillus velezensis culture filtrate on the growth and proteome of Cladobotryum mycophilumPossible reference: Clarke, J. et al. (2022) Analysis of the effect of Bacillus velezensis culture filtrate on the growth and proteome of Cladobotryum mycophilum., Fungal Biol, PMID 34930555
PXD026459 Dataset with its publication pending (from PRIDE)Dataset title: Tryptic peptide imaging of an urothelial cancer tissue cohortPossible reference: Föll, MC. et al. (2022) Moving translational mass spectrometry imaging towards transparent and reproducible data analyses: a case study of an urothelial cancer cohort analyzed in the Galaxy framework., Clin Proteomics, PMID 35439943
PXD026450 Dataset with its publication pending (from PRIDE)Dataset title: SARS-CoV-2 spike protein glycosylation enriched by HILIC and Ti-IMACPossible reference: Huang, J. et al. (2021) Simultaneous enrichment and separation of neutral and sialyl glycopeptides of SARS-CoV-2 spike protein enabled by dual-functionalized Ti-IMAC material., Anal Bioanal Chem, PMID 34155551
PXD026438 Dataset with its publication pending (from PRIDE)Dataset title: Activated interleukin-7 receptor signaling drives B-cell acute lymphoblastic leukemia in micePossible reference: Thomas, KR. et al. (2022) Activated interleukin-7 receptor signaling drives B-cell acute lymphoblastic leukemia in mice., Leukemia, PMID 34193976
PXD026424 Dataset with its publication pending (from PRIDE)Dataset title: Mouse 129SV submandibular salivary gland. -Male vs Female- and -Wildtype vs ERdj5 knockout-Possible reference: Moustardas, P. et al. (2021) Deregulation of the Kallikrein Protease Family in the Salivary Glands of the Sjögren's Syndrome ERdj5 Knockout Mouse Model., Front Immunol, PMID 34305928
PXD026407 Dataset with its publication pending (from PRIDE)Dataset title: Loss of full-length hnRNP R isoform impairs DNA damage response in motoneurons by inhibiting Yb1 recruitment to chromatinPossible reference: Ghanawi, H. et al. (2021) Loss of full-length hnRNP R isoform impairs DNA damage response in motoneurons by inhibiting Yb1 recruitment to chromatin., Nucleic Acids Res, PMID 34850154
PXD026393 no publication (from MassIVE)Dataset title: Photoredox-catalyzed decarboxylative C-terminal differentiation for bulk and single molecule proteomicsPossible reference: Zhang, L. et al. (2021) Photoredox-Catalyzed Decarboxylative C-Terminal Differentiation for Bulk- and Single-Molecule Proteomics., ACS Chem Biol, PMID 34734691
PXD026378 Dataset with its publication pending (from PRIDE)Dataset title: Variation in upstream open reading frames contributes to allelic diversity in protein abundancePossible reference: Gage, JL. et al. (2022) Variation in upstream open reading frames contributes to allelic diversity in maize protein abundance., Proc Natl Acad Sci U S A, PMID 35349347
PXD026374 Dataset with its publication pending (from PRIDE)Dataset title: PLCG1 is required for AML1-ETO leukemia stem cell self-renewalPossible reference: Schnoeder, TM. et al. (2022) PLCG1 is required for AML1-ETO leukemia stem cell self-renewal., Blood, PMID 34695195
PXD026373 Dataset with its publication pending (from PRIDE)Dataset title: Proteome-Wide Analysis of Lysine 2-Hydroxyisobutyrylation in the Aspergillus niger in PeanutsPossible reference: Xu, M. et al. (2021) Proteome-Wide Analysis of Lysine 2-Hydroxyisobutyrylation in Aspergillus niger in Peanuts., Front Microbiol, PMID 34489910
PXD026367 Dataset with its publication pending (from PRIDE)Dataset title: Structural basis for the specificity of PPM1H phosphatase for Rab GTPasesPossible reference: Waschbüsch, D. et al. (2021) Structural basis for the specificity of PPM1H phosphatase for Rab GTPases., EMBO Rep, PMID 34580980
PXD026358 no publication (from MassIVE)Dataset title: Mass spectrometry-based direct detection of multiple types of protein thiol modifications in pancreatic beta cells under endoplasmic reticulum stressPossible reference: Li, X. et al. (2021) Mass spectrometry-based direct detection of multiple types of protein thiol modifications in pancreatic beta cells under endoplasmic reticulum stress., Redox Biol, PMID 34425387
PXD026356 Dataset with its publication pending (from iProX)Dataset title: Dynamic FMR1 granule phase switch instructed by m6A modification contributes to maternal RNA decayPossible reference: Zhang, G. et al. (2022) Dynamic FMR1 granule phase switch instructed by m6A modification contributes to maternal RNA decay., Nat Commun, PMID 35165263
PXD026355 no publication (from MassIVE)Dataset title: Pervasive Translation in Mycobacterium tuberculosisPossible reference: Smith, C. et al. (2022) Pervasive translation in Mycobacterium tuberculosis., Elife, PMID 35343439
PXD026354 Dataset with its publication pending (from jPOST)Dataset title: Heart and skeletal muscle of young adult and early aging micePossible reference: Wei, B. et al. (2015) Dysferlin deficiency blunts β-adrenergic-dependent lusitropic function of mouse heart., J Physiol, PMID 26415898
PXD026344 Dataset with its publication pending (from PRIDE)Dataset title: Proteomics Profiling of mesenchymal stem cell-derived microvesiclesPossible reference: Bobis-Wozowicz, S. et al. (2015) Human Induced Pluripotent Stem Cell-Derived Microvesicles Transmit RNAs and Proteins to Recipient Mature Heart Cells Modulating Cell Fate and Behavior., Stem Cells, PMID 26031404
PXD026343 Dataset with its publication pending (from PRIDE)Dataset title: Tensin3 interaction with talin drives formation of fibronectin-associated fibrillar adhesionsPossible reference: Atherton, P. et al. (2022) Tensin3 interaction with talin drives the formation of fibronectin-associated fibrillar adhesions., J Cell Biol, PMID 36074065
PXD026322 Dataset with its publication pending (from PRIDE)Dataset title: Activated interleukin-7 receptor signaling drives B-cell acute lymphoblastic leukemia in micePossible reference: Thomas, KR. et al. (2022) Activated interleukin-7 receptor signaling drives B-cell acute lymphoblastic leukemia in mice., Leukemia, PMID 34193976
PXD026301 Dataset with its publication pending (from PRIDE)Dataset title: Comparative proteomics reveal elevated CCN2 in NGLY1 deficient cellsPossible reference: Hetz, R. et al. (2022) Comparative proteomics reveals elevated CCN2 in NGLY1-deficient cells., Biochem Biophys Res Commun, PMID 36209585
PXD026291 no publication (from MassIVE)Dataset title: Synergistic PIM kinase and proteasome inhibition in MYC-overexpressing triple-negative breast cancerPossible reference: Kunder, R. et al. (2022) Synergistic PIM kinase and proteasome inhibition as a therapeutic strategy for MYC-overexpressing triple-negative breast cancer., Cell Chem Biol, PMID 34525344
PXD026289 Dataset with its publication pending (from PRIDE)Dataset title: Sorting nexin-27 regulates AMPA receptor trafficking through the synaptic adhesion protein LRFN2Possible reference: McMillan, KJ. et al. (2021) Sorting nexin-27 regulates AMPA receptor trafficking through the synaptic adhesion protein LRFN2., Elife, PMID 34251337
PXD026288 Dataset with its publication pending (from PRIDE)Dataset title: Tumor temporal proteome profiling reveals the immunological triple offensive induced by synthetic anti-cancer SalmonellaPossible reference: Yang, S. et al. (2021) Tumor Temporal Proteome Profiling Reveals the Immunological Triple Offensive Induced by Synthetic Anti-Cancer Salmonella., Front Immunol, PMID 34489962
PXD026271 Dataset with its publication pending (from jPOST)Dataset title: Deep proteomics of HEK293 cells by DIA-MS with FAIMSPossible reference: Kawashima, Y. et al. (2022) Single-Shot 10K Proteome Approach: Over 10,000 Protein Identifications by Data-Independent Acquisition-Based Single-Shot Proteomics with Ion Mobility Spectrometry., J Proteome Res, PMID 35522919
PXD026263 Dataset with its publication pending (from PRIDE)Dataset title: Multiple regulatory intrinsically disordered motifs control FOXO4 transcription factor binding and functionPossible reference: Bourgeois, B. et al. (2021) Multiple regulatory intrinsically disordered motifs control FOXO4 transcription factor binding and function., Cell Rep, PMID 34320339
PXD026253 Dataset with its publication pending (from PRIDE)Dataset title: Analysis of the Putative Nucleoporin POM33 in the Filamentous Fungus Sordaria macrosporaPossible reference: Groth, A. et al. (2021) Analysis of the Putative Nucleoporin POM33 in the Filamentous Fungus Sordaria macrospora., J Fungi (Basel), PMID 34575720
PXD026250 no publication (from MassIVE)Dataset title: Data Independent Acquisition Mass Spectrometry of the Human Lens Enhances Spatiotemporal Measurement of Fiber Cell AgingPossible reference: Cantrell, LS. et al. (2021) Data-Independent Acquisition Mass Spectrometry of the Human Lens Enhances Spatiotemporal Measurement of Fiber Cell Aging., J Am Soc Mass Spectrom, PMID 34705440
PXD026244 Dataset with its publication pending (from PRIDE)Dataset title: Structural probing of Hsp26 activation and client binding by quantitative cross-linking mass spectrometryPossible reference: Fürsch, J. et al. (2021) Structural Probing of Hsp26 Activation and Client Binding by Quantitative Cross-Linking Mass Spectrometry., Anal Chem, PMID 34542282
PXD026241 Dataset with its publication pending (from iProX)Dataset title: Proteomic Profiles of Extracellular Vesicles from Miscarriage PlacentaePossible reference: Jena, SR. et al. (2023) Comparative proteome profiling of seminal components reveal impaired immune cell signalling as paternal contributors in recurrent pregnancy loss patients., Am J Reprod Immunol, PMID 35998016
PXD026240 Dataset with its publication pending (from jPOST)Dataset title: protein coverage improvement for mouse lung tissue by using cysteine modification methodPossible reference: Tomioka, R. et al. (2024) Extending the Coverage of Lys-C/Trypsin-Based Bottom-up Proteomics by Cysteine S-Aminoethylation., J Am Soc Mass Spectrom, PMID 38287222
PXD026237 Dataset with its publication pending (from PRIDE)Dataset title: PfAP2-O Influences Virulence Gene Transcription and Sexual Development in Plasmodium falciparumPossible reference: Cubillos, EFG. et al. (2021) The Transcription Factor PfAP2-O Influences Virulence Gene Transcription and Sexual Development in Plasmodium falciparum., Front Cell Infect Microbiol, PMID 34268135
PXD026229 Dataset with its publication pending (from PRIDE)Dataset title: Axonal and somatodendritic proteomes of dopamine neurons in the mouse brainPossible reference: Hobson, BD. et al. (2022) Subcellular proteomics of dopamine neurons in the mouse brain., Elife, PMID 35098924
PXD026181 Dataset with its publication pending (from PRIDE)Dataset title: TINCR lncRNA encodes a ubiquitin-like protein that activates CDC42, promotes epithelial differentiation and suppresses tumor growthPossible reference: Boix, O. et al. (2022) pTINCR microprotein promotes epithelial differentiation and suppresses tumor growth through CDC42 SUMOylation and activation., Nat Commun, PMID 36369429
PXD026120 Dataset with its publication pending (from PRIDE)Dataset title: The EDS1-PAD4-ADR1 node mediates Arabidopsis pattern-triggered immunityPossible reference: Pruitt, RN. et al. (2021) The EDS1-PAD4-ADR1 node mediates Arabidopsis pattern-triggered immunity., Nature, PMID 34497423
PXD026110 Dataset with its publication pending (from PRIDE)Dataset title: FASN-dependent de novo lipogenesis is required for brain developmentPossible reference: Gonzalez-Bohorquez, D. et al. (2022) FASN-dependent de novo lipogenesis is required for brain development., Proc Natl Acad Sci U S A, PMID 34996870
PXD026103 Dataset with its publication pending (from PRIDE)Dataset title: Targeted mass spectrometry enables quantification of novel pharmacodynamic biomarkers of ATM kinase inhibitorsPossible reference: Whiteaker, JR. et al. (2021) Targeted Mass Spectrometry Enables Quantification of Novel Pharmacodynamic Biomarkers of ATM Kinase Inhibition., Cancers (Basel), PMID 34359745
PXD026086 Dataset with its publication pending (from PRIDE)Dataset title: The Human Melanoma Proteome Atlas – Defining the Molecular Pathology & Complementing the Melanoma TranscriptomePossible reference: Betancourt, LH. et al. (2021) The Human Melanoma Proteome Atlas-Complementing the melanoma transcriptome., Clin Transl Med, PMID 34323402
PXD026067 Dataset with its publication pending (from PRIDE)Dataset title: Identification of Actin Filament Interactors in Giardia lambliaPossible reference: Steele-Ogus, MC. et al. (2021) Identification of Actin Filament-Associated Proteins in Giardia lamblia., Microbiol Spectr, PMID 34287056
PXD026060 Dataset with its publication pending (from PRIDE)Dataset title: Reversible amyloids of pyruvate kinase couple cell metabolism and stress granule disassemblyPossible reference: Cereghetti, G. et al. (2021) Reversible amyloids of pyruvate kinase couple cell metabolism and stress granule disassembly., Nat Cell Biol, PMID 34616026
PXD026032 Dataset with its publication pending (from iProX)Dataset title: Phosphoproteome of mouse testis at postnatal days 30Possible reference: Couto-Santos, F. et al. (2021) Prepubertal arsenic exposure alters phosphoproteins profile, quality, and fertility of epididymal spermatozoa in sexually mature rats., Toxicology, PMID 34352348
PXD026031 Dataset with its publication pending (from iProX)Dataset title: Proteome of mouse testis at postnatal days 30Possible reference: Couto-Santos, F. et al. (2021) Prepubertal arsenic exposure alters phosphoproteins profile, quality, and fertility of epididymal spermatozoa in sexually mature rats., Toxicology, PMID 34352348
PXD026025 no publication (from MassIVE)Dataset title: bound proteins of DNA nanomaterials exposed to human serumPossible reference: Cai, Z. et al. (2016) 111In-labeled trastuzumab-modified gold nanoparticles are cytotoxic in vitro to HER2-positive breast cancer cells and arrest tumor growth in vivo in athymic mice after intratumoral injection., Nucl Med Biol, PMID 27788375
PXD026009 Dataset with its publication pending (from jPOST)Dataset title: Facile one-pot nanoproteomics for label-free proteome profiling of 50-1000 mammalian cellsPossible reference: Martin, K. et al. (2021) Facile One-Pot Nanoproteomics for Label-Free Proteome Profiling of 50-1000 Mammalian Cells., J Proteome Res, PMID 34351778
PXD026008 Dataset with its publication pending (from jPOST)Dataset title: Facile one-pot nanoproteomics for label-free proteome profiling of 50-1000 mammalian cellsPossible reference: Martin, K. et al. (2021) Facile One-Pot Nanoproteomics for Label-Free Proteome Profiling of 50-1000 Mammalian Cells., J Proteome Res, PMID 34351778
PXD025997 Dataset with its publication pending (from PRIDE)Dataset title: Genome-wide identification and characterization of small peptides in maizePossible reference: Liang, Y. et al. (2021) Genome-Wide Identification and Characterization of Small Peptides in Maize., Front Plant Sci, PMID 34220917
PXD025990 no publication (from MassIVE)Dataset title: An ultrasensitive method for analysis of viral spike N-glycoformsPossible reference: Baboo, S. et al. (2021) DeGlyPHER: An Ultrasensitive Method for the Analysis of Viral Spike N-Glycoforms., Anal Chem, PMID 34597027
PXD025951 Dataset with its publication pending (from iProX)Dataset title: Specific enrichment and glycosylation discrepancy profiling of cellular exosomes by dual-affinity probePossible reference: Zhang, N. et al. (2021) Specific enrichment and glycosylation discrepancy profiling of cellular exosomes using a dual-affinity probe., Chem Commun (Camb), PMID 34059853
PXD025943 no publication (from MassIVE)Dataset title: Temporal dynamics of protein and post-translational modification abundances in Populus leaf across a diurnal periodPossible reference: Shrestha, HK. et al. (2021) Temporal dynamics of protein and post-translational modification abundances in Populus leaf across a diurnal period., Proteomics, PMID 34482644
PXD025942 no publication (from MassIVE)Dataset title: Structural basis of the interaction between SETD2 methyltransferase and hnRNP L paralogs for governing co-transcriptional splicingPossible reference: Bhattacharya, S. et al. (2021) Structural basis of the interaction between SETD2 methyltransferase and hnRNP L paralogs for governing co-transcriptional splicing., Nat Commun, PMID 34750379
PXD025939 Dataset with its publication pending (from PRIDE)Dataset title: Unravelling subcellular and ultrastructural changes during vitrification of human spermatozoa: effect of mitochondria-targeted antioxidant and permeable cryoprotectantPossible reference: Kumar, P. et al. (2021) Unraveling Subcellular and Ultrastructural Changes During Vitrification of Human Spermatozoa: Effect of a Mitochondria-Targeted Antioxidant and a Permeable Cryoprotectant., Front Cell Dev Biol, PMID 34277615
PXD025936 Dataset with its publication pending (from PRIDE)Dataset title: The termite fungal cultivar Termitomyces combines diverse enzymes and oxidative reactions for plant biomass conversionPossible reference: Schalk, F. et al. (2021) The Termite Fungal Cultivar Termitomyces Combines Diverse Enzymes and Oxidative Reactions for Plant Biomass Conversion., mBio, PMID 34126770
PXD025934 Dataset with its publication pending (from PRIDE)Dataset title: Detecting mistranslation in yeast expressing tRNA variantsPossible reference: Berg, MD. et al. (2017) Evolving Mistranslating tRNAs Through a Phenotypically Ambivalent Intermediate in Saccharomyces cerevisiae., Genetics, PMID 28576863
PXD025923 Dataset with its publication pending (from PRIDE)Dataset title: Human Cell Lines Interactomics ComparisonPossible reference: Jia, X. et al. (2014) Grouping annotations on the subcellular layered interactome demonstrates enhanced autophagy activity in a recurrent experimental autoimmune uveitis T cell line., PLoS One, PMID 25116327
PXD025918 Dataset with its publication pending (from jPOST)Dataset title: Facile one-pot nanoproteomics for label-free proteome profiling of 50-1000 mammalian cellsPossible reference: Martin, K. et al. (2021) Facile One-Pot Nanoproteomics for Label-Free Proteome Profiling of 50-1000 Mammalian Cells., J Proteome Res, PMID 34351778
PXD025876 Dataset with its publication pending (from PRIDE)Dataset title: BEMAP analysis of glycosylated YghJPossible reference: Riaz, S. et al. (2021) Characterization of Glycosylation-Specific Systemic and Mucosal IgA Antibody Responses to Escherichia coli Mucinase YghJ (SslE)., Front Immunol, PMID 34975849
PXD025870 Dataset with its publication pending (from PRIDE)Dataset title: Characterisation of a nucleo-adhesomePossible reference: Byron, A. et al. (2022) Characterisation of a nucleo-adhesome., Nat Commun, PMID 35650196
PXD025869 Dataset with its publication pending (from PRIDE)Dataset title: Characterization of Simulium damnosum salivary antigensPossible reference: Willen, L. et al. (2021) Human immune response against salivary antigens of Simulium damnosum s.l.: A new epidemiological marker for exposure to blackfly bites in onchocerciasis endemic areas., PLoS Negl Trop Dis, PMID 34157020
PXD025857 Dataset with its publication pending (from jPOST)Dataset title: Blood plasma proteome of Japanese medaka fish exposed to humic acidPossible reference: Yurchenko, VV. et al. (2022) Proteomics Analysis in Japanese Medaka Oryzias latipes Exposed to Humic Acid Revealed Suppression of Innate Immunity and Coagulation Proteins., Biology (Basel), PMID 35625410
PXD025849 Dataset with its publication pending (from PRIDE)Dataset title: Molecular characterization of hematopoietic stem cells after in vitro amplification on biomimetic 3D PDMS cell culture scaffoldsMolecular characterization of hematopoietic stem cells after in vitro amplification on biomimetic 3D PDMS cell culture scaffoldPossible reference: Marx-Blümel, L. et al. (2021) Molecular characterization of hematopoietic stem cells after in vitro amplification on biomimetic 3D PDMS cell culture scaffolds., Sci Rep, PMID 34707135
PXD025842 Dataset with its publication pending (from PRIDE)Dataset title: Comparison of extracellular matrix enrichment protocols for the improved characterization of the skin matrisome by mass spectrometryPossible reference: Dussoyer, M. et al. (2022) Comparison of extracellular matrix enrichment protocols for the improved characterization of the skin matrisome by mass spectrometry., J Proteomics, PMID 34678517
PXD025832 Dataset with its publication pending (from PRIDE)Dataset title: The interactome of site-specifically acetylated linker histone H1Possible reference: Höllmüller, E. et al. (2021) Interactome of Site-Specifically Acetylated Linker Histone H1., J Proteome Res, PMID 34351766
PXD025828 Dataset with its publication pending (from PRIDE)Dataset title: Allergenicity Assessment and Allergen Profile Analysis of Different Chinese Wheat CultivarsPossible reference: Wang, Y. et al. (2021) Allergenicity assessment and allergen profile analysis of different Chinese wheat cultivars., World Allergy Organ J, PMID 34257797
PXD025825 no publication (from MassIVE)Dataset title: Proteomic profiling of ectosomes derived from paired urothelial bladder cancer and normal cells reveals the presence of biologically-relevant moleculesPossible reference: Surman, M. et al. (2021) Proteomic Profiling of Ectosomes Derived from Paired Urothelial Bladder Cancer and Normal Cells Reveals the Presence of Biologically-Relevant Molecules., Int J Mol Sci, PMID 34202855
PXD025811 Dataset with its publication pending (from jPOST)Dataset title: IMTACT - mitochondrial enrichmentPossible reference: Boussardon, C. et al. (2022) Cell Type-Specific Isolation of Mitochondria in Arabidopsis., Methods Mol Biol, PMID 34545482
PXD025793 Dataset with its publication pending (from jPOST)Dataset title: Proteomic profiling uncovers potential proteins for biomonitoring equine melanocytic neoplasmPossible reference: Tesena, P. et al. (2021) Preliminary Study: Proteomic Profiling Uncovers Potential Proteins for Biomonitoring Equine Melanocytic Neoplasm., Animals (Basel), PMID 34199079
PXD025782 Dataset with its publication pending (from PRIDE)Dataset title: The RNA-binding proteins SRP14 and HMGB3 control HIV-1 Tat mRNA processing and translation during HIV-1 latencyPossible reference: Khoury, G. et al. (2021) The RNA-Binding Proteins SRP14 and HMGB3 Control HIV-1 Tat mRNA Processing and Translation During HIV-1 Latency., Front Genet, PMID 34194479
PXD025771 Dataset with its publication pending (from PRIDE)Dataset title: Identification of differential phosphoproteins reveled complex responses of soybean to phosphate starvation through reversible protein phosphorylationPossible reference: Jiang, W. et al. (2021) Soybean responds to phosphate starvation through reversible protein phosphorylation., Plant Physiol Biochem, PMID 34371392
PXD025767 Dataset with its publication pending (from PRIDE)Dataset title: A quantitative map of human primary microRNA processing sitesPossible reference: Pai, AA. et al. (2012) The contribution of RNA decay quantitative trait loci to inter-individual variation in steady-state gene expression levels., PLoS Genet, PMID 23071454
PXD025766 Dataset with its publication pending (from PRIDE)Dataset title: The use of linear ion traps in data independent acquisition methods benefits low-input proteomicsPossible reference: Borràs, E. et al. (2021) Use of Linear Ion Traps in Data-Independent Acquisition Methods Benefits Low-Input Proteomics., Anal Chem, PMID 34404205
PXD025754 Dataset with its publication pending (from PRIDE)Dataset title: DDX21 is a p38-MAPK sensitive nucleolar protein necessary for mouse preimplantation embryo development and cell-fate specificationPossible reference: Bora, P. et al. (2021) DDX21 is a p38-MAPK-sensitive nucleolar protein necessary for mouse preimplantation embryo development and cell-fate specification., Open Biol, PMID 34255976
PXD025747 no publication (from MassIVE)Dataset title: Metaproteomics reveals insights into microbial structure, interactions, and dynamic regulation in defined communities as they respond to environmental disturbancePossible reference: Shrestha, HK. et al. (2021) Metaproteomics reveals insights into microbial structure, interactions, and dynamic regulation in defined communities as they respond to environmental disturbance., BMC Microbiol, PMID 34749649
PXD025744 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic-based research strategy identified laminin subunit alpha 2 as a potential urinary-specific biomarker for the medullary sponge kidney diseasePossible reference: Fabris, A. et al. (2017) Proteomic-based research strategy identified laminin subunit alpha 2 as a potential urinary-specific biomarker for the medullary sponge kidney disease., Kidney Int, PMID 27914711
PXD025742 no publication (from MassIVE)Dataset title: In utero pulse-injection of isotopic amino acids quantifies protein turnover rates during murine fetal developmentPossible reference: Baeza, J. et al. (2023) In utero pulse injection of isotopic amino acids quantifies protein turnover rates during murine fetal development., bioRxiv, PMID 37293076
PXD025738 Dataset with its publication pending (from PRIDE)Dataset title: Pumilio2 and Staufen2 selectively balance the synaptic proteomePossible reference: Schieweck, R. et al. (2021) Pumilio2 and Staufen2 selectively balance the synaptic proteome., Cell Rep, PMID 34161769
PXD025732 Dataset with its publication pending (from PRIDE)Dataset title: Absolute proteome quantification in the gas-fermenting acetogen Clostridium autoethanogenumPossible reference: Valgepea, K. et al. (2022) Absolute Proteome Quantification in the Gas-Fermenting Acetogen Clostridium autoethanogenum., mSystems, PMID 35384696
PXD025725 Dataset with its publication pending (from PRIDE)Dataset title: POGLUT2 and POGLUT3 O-glucosylate multiple EGF repeats in fibrillin-1, -2, and LTBP1 and promote secretion of FBN1Possible reference: Williamson, DB. et al. (2021) POGLUT2 and POGLUT3 O-glucosylate multiple EGF repeats in fibrillin-1, -2, and LTBP1 and promote secretion of fibrillin-1., J Biol Chem, PMID 34411563
PXD025714 no publication (from MassIVE)Dataset title: Palaeoproteomic analyses of dog palaeofaeces reveal a preserved dietary and host digestive proteomePossible reference: Runge, AKW. et al. (2021) Palaeoproteomic analyses of dog palaeofaeces reveal a preserved dietary and host digestive proteome., Proc Biol Sci, PMID 34229485
PXD025704 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic response to drought and Phytophthora cinnamomi in Quercus ilex.Possible reference: Sghaier-Hammami, B. et al. (2013) Physiological and proteomics analyses of Holm oak (Quercus ilex subsp. ballota [Desf.] Samp.) responses to Phytophthora cinnamomi., Plant Physiol Biochem, PMID 23962806
PXD025683 Dataset with its publication pending (from PRIDE)Dataset title: Allergenicity Assessment and Allergen Profile Analysis of Different Chinese Wheat CultivarsPossible reference: Wang, Y. et al. (2021) Allergenicity assessment and allergen profile analysis of different Chinese wheat cultivars., World Allergy Organ J, PMID 34257797
PXD025677 no publication (from MassIVE)Dataset title: EZH2-dependent transcriptional complex promotes aberrant epithelial remodelling after injuryPossible reference: Le, HQ. et al. (2021) An EZH2-dependent transcriptional complex promotes aberrant epithelial remodelling after injury., EMBO Rep, PMID 34224201
PXD025676 Dataset with its publication pending (from PRIDE)Dataset title: Suv4-20h2 protects from influenza virus infection through suppression of chromatin loop formationPossible reference: Shiimori, M. et al. (2021) Suv4-20h2 protects against influenza virus infection by suppression of chromatin loop formation., iScience, PMID 34169237
PXD025675 Dataset with its publication pending (from PRIDE)Dataset title: Genomic locus proteomic screening identifies the NF-kB signaling pathway components NFkB1 and IKBKG as transcriptional regulators of Ripk3 in endothelial cellsPossible reference: Gao, S. et al. (2021) Genomic locus proteomic screening identifies the NF-κB signaling pathway components NFκB1 and IKBKG as transcriptional regulators of Ripk3 in endothelial cells., PLoS One, PMID 34153072
PXD025674 Dataset with its publication pending (from PRIDE)Dataset title: Rne-HupB interaction fosters mycobacterial single-cell homeostasis and fitness during drug treatment and infectionPossible reference: Griego, A. et al. (2022) RNase E and HupB dynamics foster mycobacterial cell homeostasis and fitness., iScience, PMID 35521527
PXD025652 Dataset with its publication pending (from PRIDE)Dataset title: Evaluation of fully functionalized diazirine tags for chemical proteomic applicationsPossible reference: Conway, LP. et al. (2021) Evaluation of fully-functionalized diazirine tags for chemical proteomic applications., Chem Sci, PMID 34168837
PXD025643 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic characterization of neuromelanin granules and substantia nigra in health and diseasePossible reference: Wulf, M. et al. (2021) Laser Microdissection-Based Protocol for the LC-MS/MS Analysis of the Proteomic Profile of Neuromelanin Granules., J Vis Exp, PMID 34978295
PXD025627 (from jPOST)Dataset title: MALDI spectra of Cutibacterium and Staphylococcus speciesPossible reference: Dekio, I. et al. (2021) What Do We See in Spectra?: Assignment of High-Intensity Peaks of Cutibacterium and Staphylococcus Spectra of MALDI-TOF Mass Spectrometry by Interspecies Comparative Proteogenomics., Microorganisms, PMID 34201063
PXD025621 Dataset with its publication pending (from PRIDE)Dataset title: Succinylation profiles of brain injury after intracerebral hemorrhagePossible reference: Deng, YH. et al. (2021) Succinylation profiles of brain injury after intracerebral hemorrhage., PLoS One, PMID 34780519
PXD025603 no publication (from MassIVE)Dataset title: The acyl-proteome of Syntrophus aciditrophicus reveals metabolic relationship with benzoate degradationPossible reference: Muroski, JM. et al. (2022) The Acyl-Proteome of Syntrophus aciditrophicus Reveals Metabolic Relationships in Benzoate Degradation., Mol Cell Proteomics, PMID 35189333
PXD025598 no publication (from MassIVE)Dataset title: A three-organelle complex made by wrappER contacts with peroxisomes and mitochondria responds to liver lipid flux changesPossible reference: Ilacqua, N. et al. (2022) A three-organelle complex made by wrappER contacts with peroxisomes and mitochondria responds to liver lipid flux changes., J Cell Sci, PMID 34672330
PXD025593 Dataset with its publication pending (from PRIDE)Dataset title: Heart extracellular vesicle proteome mechanicalPossible reference: Simonson, OE. et al. (2015) In Vivo Effects of Mesenchymal Stromal Cells in Two Patients With Severe Acute Respiratory Distress Syndrome., Stem Cells Transl Med, PMID 26285659
PXD025591 Dataset with its publication pending (from PRIDE)Dataset title: A proteomics database for CNS proteins of the great pond snail Lymnaea stagnalisPossible reference: Wooller, S. et al. (2022) A combined bioinformatics and LC-MS-based approach for the development and benchmarking of a comprehensive database of Lymnaea CNS proteins., J Exp Biol, PMID 35403696
PXD025586 Dataset with its publication pending (from PRIDE)Dataset title: Proteome analysis of Renibacterium salmoninarum reveals putative role of membrane vesicles in virulencePossible reference: Kroniger, T. et al. (2022) Proteome analysis of the Gram-positive fish pathogen Renibacterium salmoninarum reveals putative role of membrane vesicles in virulence., Sci Rep, PMID 35194033
PXD025574 Dataset with its publication pending (from PRIDE)Dataset title: Click-enabled analogues reveal pregnenolone interactomes in cancer and immune cellsPossible reference: Roy, S. et al. (2021) CLICK-enabled analogues reveal pregnenolone interactomes in cancer and immune cells., iScience, PMID 34036248
PXD025564 Dataset with its publication pending (from iProX)Dataset title: hepatic proteomics of transition dairy cowsPossible reference: Weitzel, JM. et al. (2017) Hepatic thyroid signaling of heat-stressed late pregnant and early lactating cows., J Endocrinol, PMID 28500083
PXD025562 Dataset with its publication pending (from PRIDE)Dataset title: In-cell structures of a conserved supramolecular array at the mitochondria-cytoskeleton interface in mammalian spermPossible reference: Leung, MR. et al. (2021) In-cell structures of conserved supramolecular protein arrays at the mitochondria-cytoskeleton interface in mammalian sperm., Proc Natl Acad Sci U S A, PMID 34737233
PXD025547 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic Analysis of Urinary Extracellular Vesicles Reveals a Role for the Complement System in Medullary Sponge Kidney DiseasePossible reference: Bruschi, M. et al. (2019) Proteomic Analysis of Urinary Extracellular Vesicles Reveals a Role for the Complement System in Medullary Sponge Kidney Disease., Int J Mol Sci, PMID 31694344
PXD025537 Dataset with its publication pending (from PRIDE)Dataset title: On-tissue spatially-resolved glycoproteomics guided by N-glycan imaging reveal global dysregulation of canine glioma glycoproteomic landscapePossible reference: Malaker, SA. et al. (2022) On-tissue spatially resolved glycoproteomics guided by N-glycan imaging reveal global dysregulation of canine glioma glycoproteomic landscape., Cell Chem Biol, PMID 34102146
PXD025528 Dataset with its publication pending (from jPOST)Dataset title: Mechanical stress induced protein precipitation method for drug target screeningPossible reference: Lyu, J. et al. (2021) Mechanical stress induced protein precipitation method for drug target screening., Anal Chim Acta, PMID 34051997
PXD025512 Dataset with its publication pending (from PRIDE)Dataset title: The venom and telopodal defence systems of the centipede Lithobius forficatus are functionally convergent serial homologuesPossible reference: Schendel, V. et al. (2024) The venom and telopodal defence systems of the centipede Lithobius forficatus are functionally convergent serial homologues., BMC Biol, PMID 38867210
PXD025507 Dataset with its publication pending (from PRIDE)Dataset title: Actinomycin targets NPM1c-primed mitochondria in AMLPossible reference: Wu, HC. et al. (2021) Actinomycin D Targets NPM1c-Primed Mitochondria to Restore PML-Driven Senescence in AML Therapy., Cancer Discov, PMID 34301789
PXD025490 Dataset with its publication pending (from PRIDE)Dataset title: Isonicotinylation is Isonicotinylation is a histone mark induced by the anti-tuberculosis first-line drug isoniazida histone mark induced by the anti-tuberculosis first-line drug isoniazidPossible reference: Jiang, Y. et al. (2021) Isonicotinylation is a histone mark induced by the anti-tuberculosis first-line drug isoniazid., Nat Commun, PMID 34545082
PXD025485 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic study of fig fruit latexPossible reference: Cui, Y. et al. (2019) Proteome and transcriptome analyses reveal key molecular differences between quality parameters of commercial-ripe and tree-ripe fig (Ficus carica L.)., BMC Plant Biol, PMID 30991947
PXD025481 Dataset with its publication pending (from PRIDE)Dataset title: Single cell chemical proteomics (SCCP) interrogates the timing and heterogeneity of cancer cell commitment to deathPossible reference: Végvári, Á. et al. (2022) Single-Cell Chemical Proteomics (SCCP) Interrogates the Timing and Heterogeneity of Cancer Cell Commitment to Death., Anal Chem, PMID 35731985
PXD025459 Dataset with its publication pending (from PRIDE)Dataset title: Automated Phosphopeptide Enrichment for Gram Positive BacteriaPossible reference: Birk, MS. et al. (2021) Automated Phosphopeptide Enrichment for Gram-Positive Bacteria., J Proteome Res, PMID 34473931
PXD025455 Dataset with its publication pending (from PRIDE)Dataset title: A Panel of Glycopeptides as Candidate Biomarkers for Early Diagnosis of NASH Hepatocellular Carcinoma Using a Stepped HCD Method and PRM EvaluationPossible reference: Lin, Y. et al. (2021) A Panel of Glycopeptides as Candidate Biomarkers for Early Diagnosis of NASH Hepatocellular Carcinoma Using a Stepped HCD Method and PRM Evaluation., J Proteome Res, PMID 33929864
PXD025449 no publication (from MassIVE)Dataset title: Profiling SARS-CoV-2 HLA-I peptidome reveals T cell epitopes from out-of-frame ORFsPossible reference: Weingarten-Gabbay, S. et al. (2021) Profiling SARS-CoV-2 HLA-I peptidome reveals T cell epitopes from out-of-frame ORFs., Cell, PMID 34171305
PXD025444 no publication (from MassIVE)Dataset title: The Histone H1-Like Protein AlgP Facilitates Even Spacing of Polyphosphate Granules in Pseudomonas aeruginosaPossible reference: Chawla, R. et al. (2022) The Histone H1-Like Protein AlgP Facilitates Even Spacing of Polyphosphate Granules in Pseudomonas aeruginosa., mBio, PMID 35435704
PXD025443 Dataset with its publication pending (from PRIDE)Dataset title: A proteomic approach for systematic mapping of human deubiquitinating enzymes substratesPossible reference: Ramirez, J. et al. (2021) A Proteomic Approach for Systematic Mapping of Substrates of Human Deubiquitinating Enzymes., Int J Mol Sci, PMID 34063716
PXD025413 Dataset with its publication pending (from PRIDE)Dataset title: The E3 ubiquitin ligase adaptor cereblon targets the C-terminal cyclic imide degronPossible reference: Ichikawa, S. et al. (2024) The cyclimids: Degron-inspired cereblon binders for targeted protein degradation., Cell Chem Biol, PMID 38320555
PXD025407 Dataset with its publication pending (from PRIDE)Dataset title: A systematic evaluation of fragmentation methods for unlabeled and isobaric mass tag-labeled O-glycopeptidesPossible reference: Mao, Y. et al. (2021) Systematic Evaluation of Fragmentation Methods for Unlabeled and Isobaric Mass Tag-Labeled O-Glycopeptides., Anal Chem, PMID 34347445
PXD025400 Dataset with its publication pending (from PRIDE)Dataset title: Translational activators and mitoribosomal isoforms cooperate to mediate mRNA-specific translation in Schizosaccharomyces pombe mitochondriaPossible reference: Herbert, CJ. et al. (2021) Translational activators and mitoribosomal isoforms cooperate to mediate mRNA-specific translation in Schizosaccharomyces pombe mitochondria., Nucleic Acids Res, PMID 34634819
PXD025394 Dataset with its publication pending (from PRIDE)Dataset title: Proteome and (ox)PTP profile analysis of diabetic NOD mouse under single (anti-CD3) or combined (anti-CD3 + IL1RA) treatmentPossible reference: Ablamunits, V. et al. (2012) Synergistic reversal of type 1 diabetes in NOD mice with anti-CD3 and interleukin-1 blockade: evidence of improved immune regulation., Diabetes, PMID 22043003
PXD025385 Dataset with its publication pending (from PRIDE)Dataset title: DIAmeter: Matching peptides to data-independent acquisition mass spectrometry dataPossible reference: Lu, YY. et al. (2021) DIAmeter: matching peptides to data-independent acquisition mass spectrometry data., Bioinformatics, PMID 34252924
PXD025383 Dataset with its publication pending (from PRIDE)Dataset title: The chimeric GaaR::XlnR transcription factor induces pectinolytic activities in the presence of D-xylose in Aspergillus nigerPossible reference: Kun, RS. et al. (2021) The chimeric GaaR-XlnR transcription factor induces pectinolytic activities in the presence of D-xylose in Aspergillus niger., Appl Microbiol Biotechnol, PMID 34236481
PXD025368 Dataset with its publication pending (from jPOST)Dataset title: olfactory proteomics in mixed dementiaPossible reference: Zelaya, MV. et al. (2015) Olfactory bulb proteome dynamics during the progression of sporadic Alzheimer's disease: identification of common and distinct olfactory targets across Alzheimer-related co-pathologies., Oncotarget, PMID 26517091
PXD025367 Dataset with its publication pending (from PRIDE)Dataset title: Comparative proteomic profiling reveals specific adaptation of Vibrio anguillarum to oxidative stress, iron deprivation and humoral components of innate immunityPossible reference: Skåne, A. et al. (2022) Comparative proteomic profiling reveals specific adaption of Vibrio anguillarum to oxidative stress, iron deprivation and humoral components of innate immunity., J Proteomics, PMID 34737109
PXD025361 Dataset with its publication pending (from PRIDE)Dataset title: PTPN23 ubiquitination by WDR4 suppresses EGFR and c-MET degradation to define a lung cancer therapeutic targetPossible reference: Singh, S. et al. (2023) PTPN23 ubiquitination by WDR4 suppresses EGFR and c-MET degradation to define a lung cancer therapeutic target., Cell Death Dis, PMID 37821451
PXD025359 Dataset with its publication pending (from PRIDE)Dataset title: Advanced fiber type-specific protein profiles derived from adult murine skeletal musclePossible reference: Eggers, B. et al. (2021) Advanced Fiber Type-Specific Protein Profiles Derived from Adult Murine Skeletal Muscle., Proteomes, PMID 34201234
PXD025358 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic changes in adipose tissue and skeletal muscle in women with PCOSPossible reference: Stener-Victorin, E. et al. (2024) Proteomic analysis shows decreased type I fibers and ectopic fat accumulation in skeletal muscle from women with PCOS., Elife, PMID 38180081
PXD025356 Dataset with its publication pending (from PRIDE)Dataset title: Secretory autophagy mediates mitochondria clearance in the absence of the mATG8-conjugation machineryPossible reference: Tan, HWS. et al. (2022) A degradative to secretory autophagy switch mediates mitochondria clearance in the absence of the mATG8-conjugation machinery., Nat Commun, PMID 35764633
PXD025349 Dataset with its publication pending (from PRIDE)Dataset title: Engineered yeast strains expressing human glycolytic enzymesPossible reference: Kuijpers, NG. et al. (2016) Pathway swapping: Toward modular engineering of essential cellular processes., Proc Natl Acad Sci U S A, PMID 27956602
PXD025344 Dataset with its publication pending (from PRIDE)Dataset title: Fruit fly O-GlcNAc glycoproteomicsPossible reference: Akan, I. et al. (2021) Drosophila O-GlcNAcase Mutants Reveal an Expanded Glycoproteome and Novel Growth and Longevity Phenotypes., Cells, PMID 33925313
PXD025339 Dataset with its publication pending (from PRIDE)Dataset title: Adenovirus remodeling of the host proteome and of host factors associating with viral genomesPossible reference: Dybas, JM. et al. (2021) Adenovirus Remodeling of the Host Proteome and Host Factors Associated with Viral Genomes., mSystems, PMID 34463575
PXD025326 no publication (from MassIVE)Dataset title: An Acquired Acyltransferase Promotes Klebsiella pneumoniae ST258 Respiratory InfectionPossible reference: Ahn, D. et al. (2021) An acquired acyltransferase promotes Klebsiella pneumoniae ST258 respiratory infection., Cell Rep, PMID 34077733
PXD025319 Dataset with its publication pending (from PRIDE)Dataset title: Redox regulation of PTPN22 affects the severity of T cell dependent autoimmune inflammationPossible reference: James, J. et al. (2022) Redox regulation of PTPN22 affects the severity of T-cell-dependent autoimmune inflammation., Elife, PMID 35587260
PXD025317 no publication (from MassIVE)Dataset title: Proteomic characterization of canine gastric fluid by liquid chromatography mass spectrometry (LCMS) for development of protein biomarkers in regurgitation, vomiting, and cough Possible reference: Grobman, M. et al. (2021) Proteomic Characterization of Canine Gastric Fluid by Liquid Chromatography-Mass Spectrometry for Development of Protein Biomarkers in Regurgitation, Vomiting, and Cough., Front Vet Sci, PMID 34307522
PXD025315 Dataset with its publication pending (from PRIDE)Dataset title: N471D WASH complex subunit strumpellin knock-in mice display BPTF and KLHL11 dysregulation in brain tissuePossible reference: Clemen, CS. et al. (2022) N471D WASH complex subunit strumpellin knock-in mice display mild motor and cardiac abnormalities and BPTF and KLHL11 dysregulation in brain tissue., Neuropathol Appl Neurobiol, PMID 34312900
PXD025309 no publication (from MassIVE)Dataset title: Multiple roles for PARP1 in ALC1-dependent nucleosome remodelingPossible reference: Ooi, SK. et al. (2021) Multiple roles for PARP1 in ALC1-dependent nucleosome remodeling., Proc Natl Acad Sci U S A, PMID 34465625
PXD025304 Dataset with its publication pending (from PRIDE)Dataset title: Elongation factor ELOF1 drives transcription-coupled repair and prevents genome instabilityPossible reference: Geijer, ME. et al. (2021) Elongation factor ELOF1 drives transcription-coupled repair and prevents genome instability., Nat Cell Biol, PMID 34108662
PXD025301 Dataset with its publication pending (from PRIDE)Dataset title: TBK1 interacts with tau and enhances neurodegeneration in tauopathyPossible reference: Abreha, MH. et al. (2021) TBK1 interacts with tau and enhances neurodegeneration in tauopathy., J Biol Chem, PMID 33965374
PXD025297 Dataset with its publication pending (from PRIDE)Dataset title: Small protein enrichment improves proteomics detection of sORF encoded peptides.Possible reference: Cassidy, L. et al. (2021) Multidimensional separation schemes enhance the identification and molecular characterization of low molecular weight proteomes and short open reading frame-encoded peptides in top-down proteomics., J Proteomics, PMID 32949814
PXD025295 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic analysis of S-nitrosylation in HUVECsPossible reference: Xu, X. et al. (2019) The protein S-nitrosylation of splicing and translational machinery in vascular endothelial cells is susceptible to oxidative stress induced by oxidized low-density lipoprotein., J Proteomics, PMID 30630120
PXD025294 Dataset with its publication pending (from PRIDE)Dataset title: Targeted proteomics as a tool to detect SARS-CoV-2 proteins in clinical specimensPossible reference: Bezstarosti, K. et al. (2021) Targeted proteomics as a tool to detect SARS-CoV-2 proteins in clinical specimens., PLoS One, PMID 34762662
PXD025293 Dataset with its publication pending (from PRIDE)Dataset title: Lima1 mediates the pluripotency control of membrane dynamics and cellular metabolismPossible reference: Duethorn, B. et al. (2022) Lima1 mediates the pluripotency control of membrane dynamics and cellular metabolism., Nat Commun, PMID 35105859
PXD025286 Dataset with its publication pending (from PRIDE)Dataset title: Synaptic protein S-palmitoylation as a novel mechanism underlying sex-dependent differences in neuronal plasticityPossible reference: Zaręba-Kozioł, M. et al. (2021) S-Palmitoylation of Synaptic Proteins as a Novel Mechanism Underlying Sex-Dependent Differences in Neuronal Plasticity., Int J Mol Sci, PMID 34200797
PXD025285 Dataset with its publication pending (from PRIDE)Dataset title: Endolysosomal processing of N-glycans on acid alpha-glucosidase is critical to attain the most active enzyme for hydrolyzing glycogenPossible reference: Selvan, N. et al. (2021) Endolysosomal N-glycan processing is critical to attain the most active form of the enzyme acid alpha-glucosidase., J Biol Chem, PMID 33971197
PXD025279 Dataset with its publication pending (from PRIDE)Dataset title: The molecular appearance of native TRPM7 channel complexes identified by high-resolution proteomicsPossible reference: Kollewe, A. et al. (2021) The molecular appearance of native TRPM7 channel complexes identified by high-resolution proteomics., Elife, PMID 34766907
PXD025275 Dataset with its publication pending (from PRIDE)Dataset title: A dual RNA regulator balancing carbon uptake and 1 central metabolism in Vibrio choleraePossible reference: Venkat, K. et al. (2021) A dual-function RNA balances carbon uptake and central metabolism in Vibrio cholerae., EMBO J, PMID 34612526
PXD025272 Dataset with its publication pending (from PRIDE)Dataset title: IKAROS and MENIN are Functionally Cooperative Therapeutic Targets in Acute Myeloid LeukemiaPossible reference: Aubrey, BJ. et al. (2022) IKAROS and MENIN coordinate therapeutically actionable leukemogenic gene expression in MLL-r acute myeloid leukemia., Nat Cancer, PMID 35534777
PXD025271 Dataset with its publication pending (from PRIDE)Dataset title: IKAROS and MENIN are Functionally Cooperative Therapeutic Targets in Acute Myeloid LeukemiaPossible reference: Aubrey, BJ. et al. (2022) IKAROS and MENIN coordinate therapeutically actionable leukemogenic gene expression in MLL-r acute myeloid leukemia., Nat Cancer, PMID 35534777
PXD025265 Dataset with its publication pending (from PRIDE)Dataset title: Drivers genes in severe forms of COVID-19Possible reference: Carapito, R. et al. (2022) Identification of driver genes for critical forms of COVID-19 in a deeply phenotyped young patient cohort., Sci Transl Med, PMID 34698500
PXD025258 Dataset with its publication pending (from PRIDE)Dataset title: Site-specific ubiquitylation acts as a regulator of linker histone H1Possible reference: Höllmüller, E. et al. (2021) Site-specific ubiquitylation acts as a regulator of linker histone H1., Nat Commun, PMID 34108453
PXD025243 Dataset with its publication pending (from PRIDE)Dataset title: RNA Polymerase II interactome in presence or absence of SPT6 in U2OS cellsPossible reference: Nandan, D. et al. (2017) Comprehensive Identification of mRNA-Binding Proteins of Leishmania donovani by Interactome Capture., PLoS One, PMID 28135300
PXD025240 Dataset with its publication pending (from PRIDE)Dataset title: Hippocampal disruptions of synaptic and astrocyte metabolism during early amyloid pathology in the 5xFAD mouse model of Alzheimer’s diseasePossible reference: Andersen, JV. et al. (2021) Hippocampal disruptions of synaptic and astrocyte metabolism are primary events of early amyloid pathology in the 5xFAD mouse model of Alzheimer's disease., Cell Death Dis, PMID 34657143
PXD025236 Dataset with its publication pending (from PRIDE)Dataset title: Temperature influences the composition and cytotoxicity of extracellular vesicles in Staphylococcus aureusPossible reference: Briaud, P. et al. (2021) Temperature Influences the Composition and Cytotoxicity of Extracellular Vesicles in Staphylococcus aureus., mSphere, PMID 34612674
PXD025234 Dataset with its publication pending (from PRIDE)Dataset title: Cold acclimation process under limited light conditions in Arabidopsis thalianaPossible reference: Nunes, C. et al. (2013) Regulation of growth by the trehalose pathway: relationship to temperature and sucrose., Plant Signal Behav, PMID 24084646
PXD025232 Dataset with its publication pending (from PRIDE)Dataset title: IKAROS and MENIN are Functionally Cooperative Therapeutic Targets in Acute Myeloid LeukemiaPossible reference: Aubrey, BJ. et al. (2022) IKAROS and MENIN coordinate therapeutically actionable leukemogenic gene expression in MLL-r acute myeloid leukemia., Nat Cancer, PMID 35534777
PXD025231 Dataset with its publication pending (from PRIDE)Dataset title: IKAROS and MENIN are Functionally Cooperative Therapeutic Targets in Acute Myeloid LeukemiaPossible reference: Aubrey, BJ. et al. (2022) IKAROS and MENIN coordinate therapeutically actionable leukemogenic gene expression in MLL-r acute myeloid leukemia., Nat Cancer, PMID 35534777
PXD025230 Dataset with its publication pending (from PRIDE)Dataset title: IKAROS and MENIN are Functionally Cooperative Therapeutic Targets in Acute Myeloid LeukemiaPossible reference: Aubrey, BJ. et al. (2022) IKAROS and MENIN coordinate therapeutically actionable leukemogenic gene expression in MLL-r acute myeloid leukemia., Nat Cancer, PMID 35534777
PXD025229 Dataset with its publication pending (from PRIDE)Dataset title: IKAROS and MENIN are Functionally Cooperative Therapeutic Targets in Acute Myeloid LeukemiaPossible reference: Aubrey, BJ. et al. (2022) IKAROS and MENIN coordinate therapeutically actionable leukemogenic gene expression in MLL-r acute myeloid leukemia., Nat Cancer, PMID 35534777
PXD025228 Dataset with its publication pending (from PRIDE)Dataset title: IKAROS and MENIN are Functionally Cooperative Therapeutic Targets in Acute Myeloid LeukemiaPossible reference: Aubrey, BJ. et al. (2022) IKAROS and MENIN coordinate therapeutically actionable leukemogenic gene expression in MLL-r acute myeloid leukemia., Nat Cancer, PMID 35534777
PXD025227 Dataset with its publication pending (from PRIDE)Dataset title: IKAROS and MENIN are Functionally Cooperative Therapeutic Targets in Acute Myeloid LeukemiaPossible reference: Aubrey, BJ. et al. (2022) IKAROS and MENIN coordinate therapeutically actionable leukemogenic gene expression in MLL-r acute myeloid leukemia., Nat Cancer, PMID 35534777
PXD025220 Dataset with its publication pending (from PRIDE)Dataset title: Crosslinking mass spectrometry of the unconventional kinetoplastid kinetochore proteins KKT16-KKT17-KKT18Possible reference: Ludzia, P. et al. (2021) Structural characterization of KKT4, an unconventional microtubule-binding kinetochore protein., Structure, PMID 33915106
PXD025218 Dataset with its publication pending (from PRIDE)Dataset title: N-linked glycoproteins from exosome-depleted excretory-secretory products of fourth-stage larval Angiostrongylus cantonensis promotes alternative activation of macrophages through metabolic reprogramming by the PI3K-Akt pathwayPossible reference: Wan, S. et al. (2021) Exosome-Depleted Excretory-Secretory Products of the Fourth-Stage Larval Angiostrongylus cantonensis Promotes Alternative Activation of Macrophages Through Metabolic Reprogramming by the PI3K-Akt Pathway., Front Immunol, PMID 34367145
PXD025213 Dataset with its publication pending (from PRIDE)Dataset title: Supermeres, a new functional extracellular nanoparticle replete with disease biomarkers and therapeutic targetPossible reference: Zhang, Q. et al. (2021) Supermeres are functional extracellular nanoparticles replete with disease biomarkers and therapeutic targets., Nat Cell Biol, PMID 34887515
PXD025196 Dataset with its publication pending (from PRIDE)Dataset title: Embryonic developmental arrest in the annual killifish Austrolebias charrua: a proteomic approach to diapause III.Possible reference: Chalar, C. et al. (2021) Embryonic developmental arrest in the annual killifish Austrolebias charrua: A proteomic approach to diapause III., PLoS One, PMID 34086690
PXD025170 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic study of fig inflorescence and receptaclePossible reference: Zhai, Y. et al. (2021) Papain-Like Cysteine Protease Gene Family in Fig (Ficus carica L.): Genome-Wide Analysis and Expression Patterns., Front Plant Sci, PMID 34122493
PXD025149 Dataset with its publication pending (from PRIDE)Dataset title: EROS is a selective chaperone regulating the phagocyte NADPH oxidase and purinergic signalling. Possible reference: Randzavola, LO. et al. (2022) EROS is a selective chaperone regulating the phagocyte NADPH oxidase and purinergic signalling., Elife, PMID 36421765
PXD025146 Dataset with its publication pending (from PRIDE)Dataset title: The global Proteome and Ubiquitinome of bacterial and viral co-infected Bronchial Epithelial CellsPossible reference: Sura, T. et al. (2022) The global proteome and ubiquitinome of bacterial and viral co-infected bronchial epithelial cells., J Proteomics, PMID 34600154
PXD025140 Dataset with its publication pending (from PRIDE)Dataset title: Labeling preferences of diazirines with protein biomoleculesPossible reference: West, AV. et al. (2021) Labeling Preferences of Diazirines with Protein Biomolecules., J Am Chem Soc, PMID 33876925
PXD025139 Dataset with its publication pending (from PRIDE)Dataset title: Pathway-guided monitoring of the disease course in bladder cancer with longitudinal urine proteomicsPossible reference: Carvalho, LB. et al. (2023) Pathway-guided monitoring of the disease course in bladder cancer with longitudinal urine proteomics., Commun Med (Lond), PMID 36646893
PXD025138 Dataset with its publication pending (from PRIDE)Dataset title: Prognostic accuracy of MALDI-TOF mass spectrometric analysis of plasma in COVID-19Possible reference: Lazari, LC. et al. (2021) Prognostic accuracy of MALDI-TOF mass spectrometric analysis of plasma in COVID-19., Life Sci Alliance, PMID 34168074
PXD025137 Dataset with its publication pending (from iProX)Dataset title: Proteomic analysis of liver tissues in chicken embryoPossible reference: Soulet, F. et al. (2013) Mapping the extracellular and membrane proteome associated with the vasculature and the stroma in the embryo., Mol Cell Proteomics, PMID 23674615
PXD025136 no publication (from MassIVE)Dataset title: JAK2-CHK2 signaling safeguards the integrity of the mitotic spindle assembly checkpoint and genome stabilityPossible reference: Chowdhury, MAN. et al. (2022) JAK2-CHK2 signaling safeguards the integrity of the mitotic spindle assembly checkpoint and genome stability., Cell Death Dis, PMID 35851582
PXD025125 Dataset with its publication pending (from PRIDE)Dataset title: Pathophysiological pathway differences in children who present with COVID-19 ARDS compared to COVID -19 induced MIS-CPossible reference: McCafferty, C. et al. (2022) Pathophysiological pathway differences in children who present with COVID-19 ARDS compared to COVID -19 induced MIS-C., Nat Commun, PMID 35501302
PXD025123 Dataset with its publication pending (from PRIDE)Dataset title: Dual roles of HSP70 chaperone HSPA1 in quality control of nascent and newly synthesized proteinsPossible reference: Tian, G. et al. (2021) Dual roles of HSP70 chaperone HSPA1 in quality control of nascent and newly synthesized proteins., EMBO J, PMID 34010456
PXD025107 Dataset with its publication pending (from PRIDE)Dataset title: Data on nucleoid-associated proteins isolated from Mycoplasma gallisepticum after intracellular infectionPossible reference: Zubov, AI. et al. (2021) Data on nucleoid-associated proteins isolated from Mycoplasma gallisepticum after intracellular infection., Data Brief, PMID 34458519
PXD025102 Dataset with its publication pending (from PRIDE)Dataset title: Molecular characterization of a complex of Apoptosis Inducing Factor 1 (AIFM1) with cytochrome c oxidase of the mitochondrial respiratory chainPossible reference: Hevler, JF. et al. (2021) Molecular characterization of a complex of apoptosis-inducing factor 1 with cytochrome c oxidase of the mitochondrial respiratory chain., Proc Natl Acad Sci U S A, PMID 34548399
PXD025101 Dataset with its publication pending (from PRIDE)Dataset title: Contribution of IFIX to nuclear and cytoplasmic proteome changes during immune signalingPossible reference: Howard, TR. et al. (2021) The DNA Sensor IFIX Drives Proteome Alterations To Mobilize Nuclear and Cytoplasmic Antiviral Responses, with Its Acetylation Acting as a Localization Toggle., mSystems, PMID 34156286
PXD025095 Dataset with its publication pending (from PRIDE)Dataset title: Epulorhiza-responsive proteins found in tubers of DactylorhizaPossible reference: Ghorbani, A. et al. (2017) DNA barcoding of tuberous Orchidoideae: a resource for identification of orchids used in Salep., Mol Ecol Resour, PMID 27768252
PXD025092 Dataset with its publication pending (from PRIDE)Dataset title: Multimodality Assessment of HFpEF Skeletal Muscle Reveals Differences in the Machinery of Energy Fuel MetabolismPossible reference: Zamani, P. et al. (2021) Multimodality assessment of heart failure with preserved ejection fraction skeletal muscle reveals differences in the machinery of energy fuel metabolism., ESC Heart Fail, PMID 33991175
PXD025087 Dataset with its publication pending (from PRIDE)Dataset title: Genomic and proteomic study of Andreprevotia ripae isolated from an anthill reveals an extensive repertoire of chitinolytic enzymesPossible reference: Lorentzen, SB. et al. (2021) Genomic and Proteomic Study of Andreprevotia ripae Isolated from an Anthill Reveals an Extensive Repertoire of Chitinolytic Enzymes., J Proteome Res, PMID 34191517
PXD025080 Dataset with its publication pending (from PRIDE)Dataset title: Proteome of the coral symbiont Breviolum minutum under elevated temperature stressPossible reference: Lust, B. et al. (2025) The Influence of Symbiont Identity on the Proteomic and Metabolomic Responses of the Model Cnidarian Aiptasia to Thermal Stress., Environ Microbiol, PMID 40056008
PXD025078 Dataset with its publication pending (from PRIDE)Dataset title: Sequential N/O-glycosylation analysis of heavily glycosylated HIV-1 gp120 by combination of electron-transfer/higher-energy collisional dissociation and stepped collision energy/higher-energy collisional dissociation (EThcD-sceHCD)Possible reference: Zhang, Y. et al. (2021) Sequential Analysis of the N/O-Glycosylation of Heavily Glycosylated HIV-1 gp120 Using EThcD-sceHCD-MS/MS., Front Immunol, PMID 34745128
PXD025066 Dataset with its publication pending (from PRIDE)Dataset title: Furan warheads for covalent trapping of weak protein-protein interactions: specific cross-linking of thymosin β4 to actinPossible reference: Miret-Casals, L. et al. (2021) Furan warheads for covalent trapping of weak protein-protein interactions: cross-linking of thymosin β4 to actin., Chem Commun (Camb), PMID 34036992
PXD025062 Dataset with its publication pending (from PRIDE)Dataset title: Detection of Cas9 post-translational modifications by mass spectrometryPossible reference: Asaoka, T. et al. (2016) Linear ubiquitination by LUBEL has a role in Drosophila heat stress response., EMBO Rep, PMID 27702987
PXD025061 Dataset with its publication pending (from PRIDE)Dataset title: Phosphatidylinositol-3-kinase p110 delta differentially restrains and directs naïve versus effector CD8+ T cell transcriptional programsPossible reference: Spinelli, L. et al. (2021) Phosphoinositide 3-Kinase p110 Delta Differentially Restrains and Directs Naïve Versus Effector CD8+ T Cell Transcriptional Programs., Front Immunol, PMID 34220851
PXD025050 Dataset with its publication pending (from PRIDE)Dataset title: Proteome of the coral symbiont Durusdinium trenchii under elevated temperature stressPossible reference: Lust, B. et al. (2025) The Influence of Symbiont Identity on the Proteomic and Metabolomic Responses of the Model Cnidarian Aiptasia to Thermal Stress., Environ Microbiol, PMID 40056008
PXD025044 Dataset with its publication pending (from jPOST)Dataset title: proteogenomics, human sarcoma cell linePossible reference: Lété, C. et al. (2012) Proteomic characterization of bovine herpesvirus 4 extracellular virions., J Virol, PMID 22896609
PXD025043 Dataset with its publication pending (from jPOST)Dataset title: proteogenomics sarcoma cell line Possible reference: Lété, C. et al. (2012) Proteomic characterization of bovine herpesvirus 4 extracellular virions., J Virol, PMID 22896609
PXD025039 Dataset with its publication pending (from jPOST)Dataset title: Matrix thermal shift assay for fast construction of multidimensional ligand targets spacePossible reference: Ruan, C. et al. (2022) Matrix Thermal Shift Assay for Fast Construction of Multidimensional Ligand-Target Space., Anal Chem, PMID 35442643
PXD025035 no publication (from MassIVE)Dataset title: Divergent and self-reactive immune responses in the CNS of COVID-19 patients with neurological symptomsPossible reference: Song, E. et al. (2020) Exploratory neuroimmune profiling identifies CNS-specific alterations in COVID-19 patients with neurological involvement., bioRxiv, PMID 32935102
PXD025031 no publication (from MassIVE)Dataset title: Selective inhibition reveals the regulatory function of DYRK2 in protein synthesis and calcium entryPossible reference: Wei, T. et al. (2022) Selective inhibition reveals the regulatory function of DYRK2 in protein synthesis and calcium entry., Elife, PMID 35439114
PXD025029 Dataset with its publication pending (from PRIDE)Dataset title: A disease-linked lncRNA mutation in RNase MRP inhibits ribosome synthesisPossible reference: Robertson, N. et al. (2022) A disease-linked lncRNA mutation in RNase MRP inhibits ribosome synthesis., Nat Commun, PMID 35115551
PXD025017 Dataset with its publication pending (from iProX)Dataset title: Comprehensive iTRAQ based proteomic Characterization of Coronary Artery DiseasesPossible reference: Sharma, P. et al. (2024) A comprehensive proteomic profiling of urinary exosomes and the identification of early non-invasive biomarker in patients with coronary artery disease., J Proteomics, PMID 38151158
PXD025016 no publication (from MassIVE)Dataset title: Divergent and self-reactive immune responses in the CNS of COVID-19 patients with neurological symptomsPossible reference: Song, E. et al. (2020) Exploratory neuroimmune profiling identifies CNS-specific alterations in COVID-19 patients with neurological involvement., bioRxiv, PMID 32935102
PXD025015 no publication (from MassIVE)Dataset title: Divergent and self-reactive immune responses in the CNS of COVID-19 patients with neurological symptomsPossible reference: Song, E. et al. (2020) Exploratory neuroimmune profiling identifies CNS-specific alterations in COVID-19 patients with neurological involvement., bioRxiv, PMID 32935102
PXD025014 no publication (from MassIVE)Dataset title: A CANCER UBIQUITOME LANDSCAPE IDENTIFIES METABOLIC REPROGRAMMING AS TARGET OF PARKIN TUMOR SUPPRESSIONPossible reference: Agarwal, E. et al. (2021) A cancer ubiquitome landscape identifies metabolic reprogramming as target of Parkin tumor suppression., Sci Adv, PMID 34433563
PXD025011 Dataset with its publication pending (from PRIDE)Dataset title: Integrative cell type-specific multi-omics approaches reveal impaired programs of glial cell differentiation in mouse culture models of DM1Possible reference: González-Barriga, A. et al. (2021) Integrative Cell Type-Specific Multi-Omics Approaches Reveal Impaired Programs of Glial Cell Differentiation in Mouse Culture Models of DM1., Front Cell Neurosci, PMID 34025359
PXD025005 Dataset with its publication pending (from PRIDE)Dataset title: Quantitative Urinary Proteomics of UCPPSPossible reference: Froehlich, JW. et al. (2022) The Urinary Proteomic Profile Implicates Key Regulators for Urologic Chronic Pelvic Pain Syndrome (UCPPS): A MAPP Research Network Study., Mol Cell Proteomics, PMID 34774759
PXD025002 Dataset with its publication pending (from PRIDE)Dataset title: The extracellular matrix landscape identifies different etiologies behind bicuspid and tricuspid aortic valve degenerationPossible reference: Beusch, CM. et al. (2023) Analysis of local extracellular matrix identifies different aetiologies behind bicuspid and tricuspid aortic valve degeneration and suggests therapies., Cell Mol Life Sci, PMID 37632572
PXD024997 Dataset with its publication pending (from PRIDE)Dataset title: Clinical Assay for the Early Detection of Colorectal Cancer Using Mass Spectrometric Wheat Germ Agglutinin Multiple Reaction MonitoringPossible reference: Tsai, IJ. et al. (2021) Clinical Assay for the Early Detection of Colorectal Cancer Using Mass Spectrometric Wheat Germ Agglutinin Multiple Reaction Monitoring., Cancers (Basel), PMID 34063271
PXD024972 Dataset with its publication pending (from jPOST)Dataset title: Comprehensive transcriptome sequencing of Tanaidacea with proteomic evidences for their silkPossible reference: Kakui, K. et al. (2021) Comprehensive Transcriptome Sequencing of Tanaidacea with Proteomic Evidences for Their Silk., Genome Biol Evol, PMID 34904645
PXD024952 Dataset with its publication pending (from PRIDE)Dataset title: The distinctive flagellar proteome of Euglena gracilisPossible reference: Hammond, M. et al. (2021) The distinctive flagellar proteome of Euglena gracilis illuminates the complexities of protistan flagella adaptation., New Phytol, PMID 34292600
PXD024949 Dataset with its publication pending (from PRIDE)Dataset title: Fast and global reorganization of the chloroplast protein biogenesis network during heat acclimationPossible reference: Trösch, R. et al. (2022) Fast and global reorganization of the chloroplast protein biogenesis network during heat acclimation., Plant Cell, PMID 34958373
PXD024934 Dataset with its publication pending (from PRIDE)Dataset title: C. albicans mtEXO mutant mitochondriaPossible reference: ÅabÄ™dzka-Dmoch, K. et al. (2021) Pervasive transcription of the mitochondrial genome in Candida albicans is revealed in mutants lacking the mtEXO RNase complex., RNA Biol, PMID 34229573
PXD024933 Dataset with its publication pending (from PRIDE)Dataset title: Examining pathways of iron and sulfur acquisition, trafficking, deployment, and storage in mineral-grown methanogen cellsPossible reference: Payne, D. et al. (2021) Examining Pathways of Iron and Sulfur Acquisition, Trafficking, Deployment, and Storage in Mineral-Grown Methanogen Cells., J Bacteriol, PMID 34251867
PXD024925 Dataset with its publication pending (from iProX)Dataset title: Discovery of metal-binding proteins by thermal proteome profiling.Possible reference: Zeng, X. et al. (2024) Discovery of metal-binding proteins by thermal proteome profiling., Nat Chem Biol, PMID 38409364
PXD024906 Dataset with its publication pending (from PRIDE)Dataset title: Spatial discordances between mRNAs and proteins in the intestinal epitheliumPossible reference: Harnik, Y. et al. (2021) Spatial discordances between mRNAs and proteins in the intestinal epithelium., Nat Metab, PMID 34931081
PXD024891 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic and lipidomic profiling of demyelinating lesions identifies fatty acids as modulators in inflammation resolutionPossible reference: Penkert, H. et al. (2021) Proteomic and lipidomic profiling of demyelinating lesions identifies fatty acids as modulators in lesion recovery., Cell Rep, PMID 34706241
PXD024873 Dataset with its publication pending (from PRIDE)Dataset title: Synechocystis sp. PCC 6803(iron and/or copper starvation)-LC MS/MSPossible reference: Huokko, T. et al. (2019) Thylakoid Localized Type 2 NAD(P)H Dehydrogenase NdbA Optimizes Light-Activated Heterotrophic Growth of Synechocystis sp. PCC 6803., Plant Cell Physiol, PMID 30847494
PXD024852 Dataset with its publication pending (from PRIDE)Dataset title: Melanoma-derived small extracellular vesicles induce lymphangiogenesis and metastasis through a NGFR-dependent mechanismPossible reference: García-Silva, S. et al. (2021) Melanoma-derived small extracellular vesicles induce lymphangiogenesis and metastasis through an NGFR-dependent mechanism., Nat Cancer, PMID 34957415
PXD024842 no publication (from MassIVE)Dataset title: Central nervous system immune response in postinfectious hydrocephalusPossible reference: Robert, SM. et al. (2023) The choroid plexus links innate immunity to CSF dysregulation in hydrocephalus., Cell, PMID 36803604
PXD024830 Dataset with its publication pending (from PRIDE)Dataset title: Proteogenomic Landscape of Uterine Leiomyomas from Hereditary Leiomyomatosis and Renal Cell Cancer PatientsPossible reference: Bateman, NW. et al. (2021) Proteogenomic landscape of uterine leiomyomas from hereditary leiomyomatosis and renal cell cancer patients., Sci Rep, PMID 33931688
PXD024829 Dataset with its publication pending (from PRIDE)Dataset title: The proteome and phosphoproteome of acute stress in the mouse hippocampusPossible reference: von Ziegler, LM. et al. (2022) Multiomic profiling of the acute stress response in the mouse hippocampus., Nat Commun, PMID 35383160
PXD024822 Dataset with its publication pending (from PRIDE)Dataset title: The human GID complex engages two independent modules for substrate recruitmentPossible reference: Mohamed, WI. et al. (2021) The human GID complex engages two independent modules for substrate recruitment., EMBO Rep, PMID 34647674
PXD024816 Dataset with its publication pending (from PRIDE)Dataset title: Mutation of Arabidopsis SME1 improves oxidative stress resiliencePossible reference: Willems, P. et al. (2023) Mutation of Arabidopsis SME1 and Sm core assembly improves oxidative stress resilience., Free Radic Biol Med, PMID 36870374
PXD024810 Dataset with its publication pending (from iProX)Dataset title: Integrated multiomic analysis reveals comprehensive tumor heterogeneity in primary and recurrent hepatocellular carcinomasPossible reference: Zhou, C. et al. (2023) Whole-exome sequencing reveals the metastatic potential of hepatocellular carcinoma from the perspective of tumor and circulating tumor DNA., Hepatol Int, PMID 37217808
PXD024807 Dataset with its publication pending (from PRIDE)Dataset title: Phosphoproteomic Profiling of T-Cell Acute Lymphoblastic Leukemia Identifies Targetable Kinases and Combination TreatmentsPossible reference: Degryse, S. et al. (2018) Mutant JAK3 phosphoproteomic profiling predicts synergism between JAK3 inhibitors and MEK/BCL2 inhibitors for the treatment of T-cell acute lymphoblastic leukemia., Leukemia, PMID 28852199
PXD024789 Dataset with its publication pending (from PRIDE)Dataset title: Wells Lab Primary T Cell SurfaceomicsPossible reference: Byrnes, JR. et al. (2022) Hypoxia Is a Dominant Remodeler of the Effector T Cell Surface Proteome Relative to Activation and Regulatory T Cell Suppression., Mol Cell Proteomics, PMID 35217172
PXD024778 no publication (from MassIVE)Dataset title: Tenrec ecaudatus liver proteomePossible reference: Khudyakov, JI. et al. (2021) Liver proteome response to torpor in a basoendothermic mammal, Tenrec ecaudatus, provides insights into the evolution of homeothermy., Am J Physiol Regul Integr Comp Physiol, PMID 34431404
PXD024771 Dataset with its publication pending (from PRIDE)Dataset title: Gefitinib results in robust host-directed immunity against Salmonella infection through proteo-metabolomic reprogramming.Possible reference: Sadhu, S. et al. (2021) Gefitinib Results in Robust Host-Directed Immunity Against Salmonella Infection Through Proteo-Metabolomic Reprogramming., Front Immunol, PMID 33868285
PXD024764 Dataset with its publication pending (from PRIDE)Dataset title: Quantitative proteomics of Hsp90 inhibition in Leishmania mexicanaPossible reference: Kalesh, K. et al. (2021) Quantitative Proteomics Reveals that Hsp90 Inhibition Dynamically Regulates Global Protein Synthesis in Leishmania mexicana., mSystems, PMID 33975965
PXD024733 Dataset with its publication pending (from PRIDE)Dataset title: culture media formulations on extracellular vesicle production by amniotic epithelial cellsPossible reference: Zhu, D. et al. (2021) Impact of chemically defined culture media formulations on extracellular vesicle production by amniotic epithelial cells., Proteomics, PMID 34081834
PXD024730 Dataset with its publication pending (from PRIDE)Dataset title: Global analysis of lysine 2-hydroxyisobutyrylation in Rheum palmatumPossible reference: Qi, T. et al. (2021) Global analysis of protein lysine 2-hydroxyisobutyrylation (Khib) profiles in Chinese herb rhubarb (Dahuang)., BMC Genomics, PMID 34266380
PXD024728 Dataset with its publication pending (from PRIDE)Dataset title: SOD1 is a possible predictor of COVID-19 progression as revealed by plasma proteomicsPossible reference: Xu, B. et al. (2021) SOD1 is a Possible Predictor of COVID-19 Progression as Revealed by Plasma Proteomics., ACS Omega, PMID 34250342
PXD024721 Dataset with its publication pending (from PRIDE)Dataset title: Tetrahydrocurcumin ameliorates Alzheimer's pathological phenotypes by inhibition of microglial cell cycle arrest and apoptosis via Ras/ERK signalingPossible reference: Xiao, Y. et al. (2021) Tetrahydrocurcumin ameliorates Alzheimer's pathological phenotypes by inhibition of microglial cell cycle arrest and apoptosis via Ras/ERK signaling., Biomed Pharmacother, PMID 34243602
PXD024720 Dataset with its publication pending (from PRIDE)Dataset title: The evolution of Proteomics in the genus FlaveriaPossible reference: Aldous, SH. et al. (2014) Evolution of the Phosphoenolpyruvate Carboxylase Protein Kinase Family in C3 and C4 Flaveria spp., Plant Physiol, PMID 24850859
PXD024715 Dataset with its publication pending (from PRIDE)Dataset title: Sox9 determines translational capacity during early chondrogenic differentiation of ATDC5 cells by regulating expression of ribosome biogenesis factors and ribosomal proteinsPossible reference: Caron, MMJ. et al. (2021) Sox9 Determines Translational Capacity During Early Chondrogenic Differentiation of ATDC5 Cells by Regulating Expression of Ribosome Biogenesis Factors and Ribosomal Proteins., Front Cell Dev Biol, PMID 34235151
PXD024701 Dataset with its publication pending (from PRIDE)Dataset title: TMT-based quantitative proteomics analysis reveals the function of ester cyclase in the rice false smut fungus Ustilaginoidea virensPossible reference: Chen, X. et al. (2021) Quantitative Proteomics Analysis Reveals the Function of the Putative Ester Cyclase UvEC1 in the Pathogenicity of the Rice False Smut Fungus Ustilaginoidea virens., Int J Mol Sci, PMID 33920773
PXD024700 Dataset with its publication pending (from PRIDE)Dataset title: 1,2-Propanediol utilization mediated by bacterial microcompartments in Propionibacterium freudenreichii DSM 20271Possible reference: Dank, A. et al. (2021) Bacterial Microcompartment-Dependent 1,2-Propanediol Utilization of Propionibacterium freudenreichii., Front Microbiol, PMID 34054787
PXD024683 Dataset with its publication pending (from PRIDE)Dataset title: Rational correction of pathogenic conformational defects in HTRA1Possible reference: Beaufort, N. et al. (2024) Rational correction of pathogenic conformational defects in HTRA1., Nat Commun, PMID 39013852
PXD024682 Dataset with its publication pending (from PRIDE)Dataset title: Chromosomal instability by mutations in the novel minor spliceosome component CENATACPossible reference: de Wolf, B. et al. (2021) Chromosomal instability by mutations in the novel minor spliceosome component CENATAC., EMBO J, PMID 34009673
PXD024679 Dataset with its publication pending (from PRIDE)Dataset title: An ERK5-KLF2 signalling module regulates early embryonic gene expression dynamics and stem cell rejuvenationPossible reference: Brown, HA. et al. (2021) An ERK5-KLF2 signalling module regulates early embryonic gene expression and telomere rejuvenation in stem cells., Biochem J, PMID 34780645
PXD024676 no publication (from MassIVE)Dataset title: A systematic evaluation of semispecific peptide search parameter enables identification of previously undescribed N-terminal peptides and conserved proteolytic processing in cancer cell linesPossible reference: Fahrner, M. et al. (2021) A Systematic Evaluation of Semispecific Peptide Search Parameter Enables Identification of Previously Undescribed N-Terminal Peptides and Conserved Proteolytic Processing in Cancer Cell Lines., Proteomes, PMID 34070654
PXD024652 no publication (from MassIVE)Dataset title: Detectability of biotin tags in LC-MS/MSPossible reference: Thompson, JW. et al. (2013) Solid-phase capture for the detection and relative quantification of S-nitrosoproteins by mass spectrometry., Methods, PMID 23064468
PXD024638 Dataset with its publication pending (from PRIDE)Dataset title: Venom proteomic analysis of two medically important Nigerian viperidae (Echis ocellatus and Bitis arietans) snake speciesPossible reference: Dingwoke, EJ. et al. (2021) Venom proteomic analysis of medically important Nigerian viper Echis ocellatus and Bitis arietans snake species., Biochem Biophys Rep, PMID 34765747
PXD024625 Dataset with its publication pending (from PRIDE)Dataset title: The biochemical basis of mitochondrial dysfunction in Zellweger Spectrum DisorderPossible reference: Berendse, K. et al. (2019) Liver disease predominates in a mouse model for mild human Zellweger spectrum disorder., Biochim Biophys Acta Mol Basis Dis, PMID 31207289
PXD024605 Dataset with its publication pending (from PRIDE)Dataset title: Too Hot to Handle: Antibacterial Peptides Identified in Ghost PepperPossible reference: Culver, KD. et al. (2021) Too Hot to Handle: Antibacterial Peptides Identified in Ghost Pepper., J Nat Prod, PMID 34445876
PXD024603 Dataset with its publication pending (from PRIDE)Dataset title: ArfGAP1 inhibits mTORC1 lysosomal localization and activationPossible reference: Meng, D. et al. (2021) ArfGAP1 inhibits mTORC1 lysosomal localization and activation., EMBO J, PMID 33988249
PXD024601 Dataset with its publication pending (from PRIDE)Dataset title: Systematic analysis of the impact of R-methylation on RBPs-RNA interactionsPossible reference: Maniaci, M. et al. (2021) Systematic Analysis of the Impact of R-Methylation on RBPs-RNA Interactions: A Proteomic Approach., Front Mol Biosci, PMID 34557518
PXD024599 Dataset with its publication pending (from PRIDE)Dataset title: Dynamic methylation of histone H3K18 in differentiating Theileria parasitesPossible reference: Cheeseman, K. et al. (2021) Dynamic methylation of histone H3K18 in differentiating Theileria parasites., Nat Commun, PMID 34050145
PXD024592 Dataset with its publication pending (from PRIDE)Dataset title: Effects of thermal acclimation on the proteome of the planarian Crenobia alpina from an alpine freshwater springPossible reference: Ebner, JN. et al. (2022) Effects of thermal acclimation on the proteome of the planarian Crenobia alpina from an alpine freshwater spring., J Exp Biol, PMID 35875852
PXD024590 Dataset with its publication pending (from PRIDE)Dataset title: Analysis of the substrate specificities and reaction kinetics of the yeast oligosaccharyltransferase isoformsPossible reference: Eyring, J. et al. (2021) Substrate specificities and reaction kinetics of the yeast oligosaccharyltransferase isoforms., J Biol Chem, PMID 34023382
PXD024588 Dataset with its publication pending (from PRIDE)Dataset title: Protein identification of spermatozoa and seminal plasma in bottlenose dolphin (Tursiops truncatus)Possible reference: Fuentes-Albero, MC. et al. (2021) Protein Identification of Spermatozoa and Seminal Plasma in Bottlenose Dolphin (Tursiops truncatus)., Front Cell Dev Biol, PMID 34336830
PXD024586 no publication (from MassIVE)Dataset title: Listeria exploits IFITM3 to suppress antibacterial activity in phagocytesPossible reference: Tan, JMJ. et al. (2021) Listeria exploits IFITM3 to suppress antibacterial activity in phagocytes., Nat Commun, PMID 34404769
PXD024579 Dataset with its publication pending (from PRIDE)Dataset title: Ovalbumin antigen-specific activation of T cell receptor closely resembles antibody stimulation as revealed by BOOST phosphotyrosine proteomicsPossible reference: Chua, XY. et al. (2021) Ovalbumin Antigen-Specific Activation of Human T Cell Receptor Closely Resembles Soluble Antibody Stimulation as Revealed by BOOST Phosphotyrosine Proteomics., J Proteome Res, PMID 34018748
PXD024550 Dataset with its publication pending (from PRIDE)Dataset title: Characterisation of the pseudokinase SCYL1Possible reference: Kuliyev, E. et al. (2018) Overlapping Role of SCYL1 and SCYL3 in Maintaining Motor Neuron Viability., J Neurosci, PMID 29437892
PXD024540 Dataset with its publication pending (from PRIDE)Dataset title: IGDQ motogenic peptide gradient induces directional cell migration through integrin (αv)β3 activation in metastatic breast cancerPossible reference: Ayama-Canden, S. et al. (2022) IGDQ motogenic peptide gradient induces directional cell migration through integrin (αv)β3 activation in MDA-MB-231 metastatic breast cancer cells., Neoplasia, PMID 35763908
PXD024537 no publication (from MassIVE)Dataset title: Gut microbial communities enriched with quaternary aminesPossible reference: Yang, C. et al. (2020) Protective Effect of Saponins-Enriched Fraction of Gynostemma pentaphyllum against High Choline-Induced Vascular Endothelial Dysfunction and Hepatic Damage in Mice., Biol Pharm Bull, PMID 32115504
PXD024532 no publication (from MassIVE)Dataset title: A highly conserved pocket on PP2A-B56 is required for hSgo1 binding and cohesion protection during mitosisPossible reference: Ueki, Y. et al. (2021) A highly conserved pocket on PP2A-B56 is required for hSgo1 binding and cohesion protection during mitosis., EMBO Rep, PMID 33973335
PXD024531 no publication (from MassIVE)Dataset title: Alternative polyadenylation quantitative trait loci contributing to complex trait and disease heritabilityPossible reference: Li, L. et al. (2021) An atlas of alternative polyadenylation quantitative trait loci contributing to complex trait and disease heritability., Nat Genet, PMID 33986536
PXD024521 Dataset with its publication pending (from PRIDE)Dataset title: Targeting Pancreatic Cancer by TAK-981, a SUMOylation Inhibitor that Activates the Immune System and Blocks Tumor Cell Cycle ProgressionPossible reference: Kumar, S. et al. (2022) Targeting pancreatic cancer by TAK-981: a SUMOylation inhibitor that activates the immune system and blocks cancer cell cycle progression in a preclinical model., Gut, PMID 35074907
PXD024504 no publication (from MassIVE)Dataset title: Global coordination of metabolic pathways in Escherichia coli by active and passive regulationPossible reference: Kochanowski, K. et al. (2021) Global coordination of metabolic pathways in Escherichia coli by active and passive regulation., Mol Syst Biol, PMID 33852189
PXD024502 Dataset with its publication pending (from PRIDE)Dataset title: Loss of enteric neuronal Ndrg4 promotes colorectal cancer via increased release of Nid1 and Fbln2Possible reference: Vaes, N. et al. (2021) Loss of enteric neuronal Ndrg4 promotes colorectal cancer via increased release of Nid1 and Fbln2., EMBO Rep, PMID 33890711
PXD024490 Dataset with its publication pending (from PRIDE)Dataset title: Quantitative proteomics and transcriptomics analysis of fruit development and ripening in watermelonPossible reference: Yu, Y. et al. (2022) Quantitative Transcriptomic and Proteomic Analysis of Fruit Development and Ripening in Watermelon (Citrullus lanatus)., Front Plant Sci, PMID 35392508
PXD024482 Dataset with its publication pending (from PRIDE)Dataset title: Visualization and identification of bioorthogonally-labeled exosome proteins following systemic administration in micePossible reference: Zhang, E. et al. (2021) Visualization and Identification of Bioorthogonally Labeled Exosome Proteins Following Systemic Administration in Mice., Front Cell Dev Biol, PMID 33898459
PXD024472 no publication (from MassIVE)Dataset title: Systematic characterization of gut microbiome-secreted molecules by integrated multi-omicsPossible reference: De Saedeleer, B. et al. (2021) Systematic characterization of human gut microbiome-secreted molecules by integrated multi-omics., ISME Commun, PMID 35106519
PXD024470 no publication (from MassIVE)Dataset title: Succinylome-controlled antibiotic resistance in MRSA - SuccinylomePossible reference: Campbell, C. et al. (2021) Accumulation of Succinyl Coenzyme A Perturbs the Methicillin-Resistant Staphylococcus aureus (MRSA) Succinylome and Is Associated with Increased Susceptibility to Beta-Lactam Antibiotics., mBio, PMID 34182779
PXD024462 Dataset with its publication pending (from PRIDE)Dataset title: GID E3 ligase supramolecular chelate assembly configures multipronged ubiquitin targeting of an oligomeric metabolic enzymePossible reference: Sherpa, D. et al. (2021) GID E3 ligase supramolecular chelate assembly configures multipronged ubiquitin targeting of an oligomeric metabolic enzyme., Mol Cell, PMID 33905682
PXD024457 Dataset with its publication pending (from PRIDE)Dataset title: Allosteric transcription stimulation by super elongation complexPossible reference: Chen, Y. et al. (2021) Allosteric transcription stimulation by RNA polymerase II super elongation complex., Mol Cell, PMID 34265249
PXD024451 Dataset with its publication pending (from iProX)Dataset title: Proteomes analysis of exosomes from hepatocellular carcinoma PDX mousePossible reference: Li, H. et al. (2024) Exosomes derived from syncytia induced by SARS-2-S promote the proliferation and metastasis of hepatocellular carcinoma cells., Front Cell Infect Microbiol, PMID 39844837
PXD024426 Dataset with its publication pending (from PRIDE)Dataset title: Extracellular vimentin mimics VEGF and is a target for anti-angiogenic immunotherapyPossible reference: van Beijnum, JR. et al. (2022) Extracellular vimentin mimics VEGF and is a target for anti-angiogenic immunotherapy., Nat Commun, PMID 35606362
PXD024419 Dataset with its publication pending (from PRIDE)Dataset title: Cargo and lipid profiling of isolated autophagosomes upon basal autophagy, starvation, and proteasome inhibitionPossible reference: Schmitt, D. et al. (2022) Lipid and protein content profiling of isolated native autophagic vesicles., EMBO Rep, PMID 36215690
PXD024412 Dataset with its publication pending (from PRIDE)Dataset title: KRAS Epitope Identification ImmunopeptidomicsPossible reference: Ade, CM. et al. (2023) Identification of neoepitope reactive T-cell receptors guided by HLA-A*03:01 and HLA-A*11:01 immunopeptidomics., J Immunother Cancer, PMID 37758652
PXD024398 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic landscape of SARS-CoV-2- and MERS-CoV-infected primary human renal epithelial cellsPossible reference: Kohli, A. et al. (2022) Proteomic landscape of SARS-CoV-2- and MERS-CoV-infected primary human renal epithelial cells., Life Sci Alliance, PMID 35110370
PXD024388 Dataset with its publication pending (from PRIDE)Dataset title: A KRAS-responsive long non-coding RNA controls microRNAPossible reference: Shi, L. et al. (2021) A KRAS-responsive long non-coding RNA controls microRNA processing., Nat Commun, PMID 33795683
PXD024381 Dataset with its publication pending (from PRIDE)Dataset title: Corynebacterium diphtheriae proteome adaptation to cell culture medium and serumPossible reference: Möller, J. et al. (2021) Corynebacterium diphtheriae Proteome Adaptation to Cell Culture Medium and Serum., Proteomes, PMID 33805816
PXD024370 no publication (from MassIVE)Dataset title: Plasma proteomic profile associated with platelet dysfunction after traumaPossible reference: Bateman, RM. et al. (2016) 36th International Symposium on Intensive Care and Emergency Medicine : Brussels, Belgium. 15-18 March 2016., Crit Care, PMID 27885969
PXD024359 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic Clustering Reveals the Kinetics of Disease Biomarkers in Bovine and Human Models of Post-Traumatic OsteoarthritisPossible reference: Black, RM. et al. (2021) Proteomic Clustering Reveals the Kinetics of Disease Biomarkers in Bovine and Human Models of Post-Traumatic Osteoarthritis., Osteoarthr Cartil Open, PMID 36313736
PXD024356 Dataset with its publication pending (from PRIDE)Dataset title: Organ-specific inflammaging in micePossible reference: Mogilenko, DA. et al. (2021) Comprehensive Profiling of an Aging Immune System Reveals Clonal GZMK+ CD8+ T Cells as Conserved Hallmark of Inflammaging., Immunity, PMID 33271118
PXD024352 Dataset with its publication pending (from PRIDE)Dataset title: Deletion of the transcription factors Hsf1, Msn2 and Msn4 in yeast uncovers transcriptional reprogramming in response to proteotoxic stressPossible reference: Mühlhofer, M. et al. (2024) Deletion of the transcription factors Hsf1, Msn2 and Msn4 in yeast uncovers transcriptional reprogramming in response to proteotoxic stress., FEBS Lett, PMID 38366111
PXD024350 Dataset with its publication pending (from PRIDE)Dataset title: Analysis of Ataxin-2 interactome using LC-MS/MSPossible reference: Inagaki, H. et al. (2021) DDX6 is a positive regulator of Ataxin-2/PAPD4 cytoplasmic polyadenylation machinery., Biochem Biophys Res Commun, PMID 33756349
PXD024346 Dataset with its publication pending (from PRIDE)Dataset title: Genomic ancestry, diet and microbiomes of Upper Palaeolithic hunter-gatherers from San Teodoro cave (Sicily, Italy)Possible reference: Scorrano, G. et al. (2022) Genomic ancestry, diet and microbiomes of Upper Palaeolithic hunter-gatherers from San Teodoro cave., Commun Biol, PMID 36400919
PXD024343 Dataset with its publication pending (from PRIDE)Dataset title: Coiled-Coil Domain-Containing 68 Downregulation Promotes Colorectal Cancer Cell Growth by Inhibiting ITCH-Mediated CDK4 DegradationPossible reference: Wang, C. et al. (2021) Coiled-Coil Domain-Containing 68 Downregulation Promotes Colorectal Cancer Cell Growth by Inhibiting ITCH-Mediated CDK4 Degradation., Front Oncol, PMID 33968776
PXD024342 Dataset with its publication pending (from PRIDE)Dataset title: Comparative proteomic analysis of the defense response to Gibberella stalk rot in maizePossible reference: Bai, H. et al. (2021) Comparative Proteomic Analysis of the Defense Response to Gibberella Stalk Rot in Maize and Reveals That ZmWRKY83 Is Involved in Plant Disease Resistance., Front Plant Sci, PMID 34489999
PXD024330 Dataset with its publication pending (from PRIDE)Dataset title: Interactome of the Autophagy Receptor TAX1BP1 (T6BP)Possible reference: Sarango, G. et al. (2022) The Autophagy Receptor TAX1BP1 (T6BP) improves antigen presentation by MHC-II molecules., EMBO Rep, PMID 36215666
PXD024322 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic analysis of archival breast cancer clinical specimens identifies biological subtypes with distinct survival outcomesPossible reference: Asleh, K. et al. (2022) Proteomic analysis of archival breast cancer clinical specimens identifies biological subtypes with distinct survival outcomes., Nat Commun, PMID 35173148
PXD024321 Dataset with its publication pending (from PRIDE)Dataset title: A SUPERFAMILY-WIDE ACTIVITY ATLAS OF SERINE HYDROLASES IN DROSOPHILA MELANOGASTERPossible reference: Kumar, K. et al. (2021) A Superfamily-wide Activity Atlas of Serine Hydrolases in Drosophila melanogaster., Biochemistry, PMID 33827210
PXD024320 Dataset with its publication pending (from PRIDE)Dataset title: SILAC-based quantitative proteomics of cancer cells treated with the anti-tumor antibody 14F7Possible reference: Bousquet, PA. et al. (2022) SILAC-based quantitative proteomics and microscopy analysis of cancer cells treated with the N-glycolyl GM3-specific anti-tumor antibody 14F7., Front Immunol, PMID 36439103
PXD024310 no publication (from MassIVE)Dataset title: Proteomics - LCWE Kawasaki ModelPossible reference: Porritt, RA. et al. (2021) Inhibition of IL-6 in the LCWE Mouse Model of Kawasaki Disease Inhibits Acute Phase Reactant Serum Amyloid A but Fails to Attenuate Vasculitis., Front Immunol, PMID 33897686
PXD024301 Dataset with its publication pending (from PRIDE)Dataset title: Molecular basis of F-actin regulation and sarcomere assembly via myotilinPossible reference: Kostan, J. et al. (2021) Molecular basis of F-actin regulation and sarcomere assembly via myotilin., PLoS Biol, PMID 33844684
PXD024294 Dataset with its publication pending (from PRIDE)Dataset title: miR-146 modulation in ALS astrocytesPossible reference: Gomes, C. et al. (2022) Neurotoxic Astrocytes Directly Converted from Sporadic and Familial ALS Patient Fibroblasts Reveal Signature Diversities and miR-146a Theragnostic Potential in Specific Subtypes., Cells, PMID 35406750
PXD024281 Dataset with its publication pending (from PRIDE)Dataset title: Lactate Dehydrogenase B and Pyruvate Oxidation Pathway associated with Carfilzomib-Related Cardiotoxicity in Multiple Myeloma Patients: Result of a Multi-Omics Integrative AnalysisPossible reference: Tantawy, M. et al. (2021) Lactate Dehydrogenase B and Pyruvate Oxidation Pathway Associated With Carfilzomib-Related Cardiotoxicity in Multiple Myeloma Patients: Result of a Multi-Omics Integrative Analysis., Front Cardiovasc Med, PMID 33996940
PXD024262 no publication (from MassIVE)Dataset title: Resource allocation in the archaeon Methanococcus maripaludis during slow growthPossible reference: Müller, AL. et al. (2021) An alternative resource allocation strategy in the chemolithoautotrophic archaeon Methanococcus maripaludis., Proc Natl Acad Sci U S A, PMID 33879571
PXD024245 no publication (from MassIVE)Dataset title: Coupling of Cdc20 inhibition and activation by BubR1Possible reference: Hein, JB. et al. (2021) Coupling of Cdc20 inhibition and activation by BubR1., J Cell Biol, PMID 33819340
PXD024243 Dataset with its publication pending (from PRIDE)Dataset title: Cellular proteomic changes in the immediate early phase of HIV-1 and 2 transductionPossible reference: Linkner, TR. et al. (2021) Cellular Proteo-Transcriptomic Changes in the Immediate Early-Phase of Lentiviral Transduction., Microorganisms, PMID 34835333
PXD024219 Dataset with its publication pending (from PRIDE)Dataset title: Network analysis of the CSF proteome characterises convergent pathways of cellular dysfunction in ALSPossible reference: Thompson, AG. et al. (2021) Network Analysis of the CSF Proteome Characterizes Convergent Pathways of Cellular Dysfunction in ALS., Front Neurosci, PMID 33815045
PXD024203 Dataset with its publication pending (from PRIDE)Dataset title: Potential, Properties and Sources of Plant Derived Extracellular Vesicles and NanovesiclesPossible reference: Woith, E. et al. (2021) Plant Extracellular Vesicles and Nanovesicles: Focus on Secondary Metabolites, Proteins and Lipids with Perspectives on Their Potential and Sources., Int J Mol Sci, PMID 33918442
PXD024200 Dataset with its publication pending (from PRIDE)Dataset title: TWIST1 expression is associated with high-risk Neuroblastoma and promotes Primary and Metastatic Tumor GrowthPossible reference: Sepporta, MV. et al. (2022) TWIST1 expression is associated with high-risk neuroblastoma and promotes primary and metastatic tumor growth., Commun Biol, PMID 35022561
PXD024185 no publication (from MassIVE)Dataset title: GTPBP8 is required for mitoribosomal biogenesis and mitochondrial translation Possible reference: Wang, L. et al. (2023) GTPBP8 is required for mitoribosomal biogenesis and mitochondrial translation., Cell Mol Life Sci, PMID 37971521
PXD024177 Dataset with its publication pending (from PRIDE)Dataset title: Quantitative profiling of axonal guidance proteins during the differentiation of human neurospheresPossible reference: Goto-Silva, L. et al. (2021) Quantitative profiling of axonal guidance proteins during the differentiation of human neurospheres., Biochim Biophys Acta Proteins Proteom, PMID 33857633
PXD024167 Dataset with its publication pending (from jPOST)Dataset title: Chromatin Proteome of Drosophila Ovarian somatic cellsPossible reference: Rivera, AJ. et al. (2025) Traffic Jam activates the Flamenco piRNA cluster locus and the Piwi pathway to ensure transposon silencing and Drosophila fertility., Cell Rep, PMID 40209716
PXD024165 no publication (from MassIVE)Dataset title: Skeletal Muscle Metabolism of the Astyanax mexicanusPossible reference: Olsen, L. et al. (2023) Metabolic reprogramming underlies cavefish muscular endurance despite loss of muscle mass and contractility., Proc Natl Acad Sci U S A, PMID 36693105
PXD024163 no publication (from MassIVE)Dataset title: Liceaga / Aguilar-Toala chia seed protein hydrolysate antimicrobial peptidesPossible reference: Aguilar-Toalá, JE. et al. (2020) New Insights into the Antimicrobial Properties of Hydrolysates and Peptide Fractions Derived from Chia Seed (Salvia hispanica L.)., Probiotics Antimicrob Proteins, PMID 32385579
PXD024160 Dataset with its publication pending (from PRIDE)Dataset title: Nse5/6 inhibits the Smc5/6 ATPase and modulates DNA substrate bindingPossible reference: Taschner, M. et al. (2021) Nse5/6 inhibits the Smc5/6 ATPase and modulates DNA substrate binding., EMBO J, PMID 34191293
PXD024158 Dataset with its publication pending (from PRIDE)Dataset title: Hepatic cytochrome P450 abundance and activity in the developing and adult Göttingen Minipig: pivotal data for PBPK modelingPossible reference: Buyssens, L. et al. (2021) Hepatic Cytochrome P450 Abundance and Activity in the Developing and Adult Göttingen Minipig: Pivotal Data for PBPK Modeling., Front Pharmacol, PMID 33935788
PXD024134 Dataset with its publication pending (from PRIDE)Dataset title: Optimized Sample Preparation Workflow for Improved Identification of Ghost ProteinsPossible reference: Cardon, T. et al. (2020) Optimized Sample Preparation Workflow for Improved Identification of Ghost Proteins., Anal Chem, PMID 31829555
PXD024108 Dataset with its publication pending (from PRIDE)Dataset title: Melanoma-derived small extracellular vesicles induce lymphangiogenesis and metastasis by a NGFR-dependent mechanismPossible reference: García-Silva, S. et al. (2021) Melanoma-derived small extracellular vesicles induce lymphangiogenesis and metastasis through an NGFR-dependent mechanism., Nat Cancer, PMID 34957415
PXD024101 Dataset with its publication pending (from PRIDE)Dataset title: Community Evaluation of Glycoproteomics Informatics Solutions Reveals High-Performance Search Strategies for Glycopeptide AnalysisPossible reference: Kawahara, R. et al. (2021) Community evaluation of glycoproteomics informatics solutions reveals high-performance search strategies for serum glycopeptide analysis., Nat Methods, PMID 34725484
PXD024088 Dataset with its publication pending (from PRIDE)Dataset title: Neddylation modification on cGAS of human and mousePossible reference: Li, C. et al. (2021) RNF111-facilitated neddylation potentiates cGAS-mediated antiviral innate immune response., PLoS Pathog, PMID 33720974
PXD024085 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic analysis of Streptomyces coelicolor vesiclesPossible reference: Faddetta, T. et al. (2022) Streptomyces coelicolor Vesicles: Many Molecules To Be Delivered., Appl Environ Microbiol, PMID 34669446
PXD024084 Dataset with its publication pending (from PRIDE)Dataset title: Autocatalytic activation of a malarial egress protease is druggable and requires a protein cofactorPossible reference: Tan, MSY. et al. (2021) Autocatalytic activation of a malarial egress protease is druggable and requires a protein cofactor., EMBO J, PMID 33932049
PXD024075 Dataset with its publication pending (from PRIDE)Dataset title: Synaptic accumulation of FUS triggers early misregulation of synaptic RNAs in ALS-FUS micePossible reference: Sahadevan, S. et al. (2021) Synaptic FUS accumulation triggers early misregulation of synaptic RNAs in a mouse model of ALS., Nat Commun, PMID 34021139
PXD024072 Dataset with its publication pending (from PRIDE)Dataset title: plasma-derived exosomes from healthy and osteosarcomaPossible reference: Han, Z. et al. (2021) SERS and MALDI-TOF MS based plasma exosome profiling for rapid detection of osteosarcoma., Analyst, PMID 34569564
PXD024060 Dataset with its publication pending (from PRIDE)Dataset title: Alteration of microbiota antibody-mediated immune selection contributes to dysbiosis in IBDPossible reference: Michaud, E. et al. (2022) Alteration of microbiota antibody-mediated immune selection contributes to dysbiosis in inflammatory bowel diseases., EMBO Mol Med, PMID 35785473
PXD024051 Dataset with its publication pending (from PRIDE)Dataset title: ELOF1 is a transcription-coupled DNA repair factor that directs RNA polymerase II ubiquitylationPossible reference: van der Weegen, Y. et al. (2021) ELOF1 is a transcription-coupled DNA repair factor that directs RNA polymerase II ubiquitylation., Nat Cell Biol, PMID 34108663
PXD024043 Dataset with its publication pending (from PRIDE)Dataset title: Ultra-high sensitivity mass spectrometry quantifies single-cell proteome changes upon perturbationPossible reference: Brunner, AD. et al. (2022) Ultra-high sensitivity mass spectrometry quantifies single-cell proteome changes upon perturbation., Mol Syst Biol, PMID 35226415
PXD024035 Dataset with its publication pending (from PRIDE)Dataset title: Orphan nuclear receptor COUP-TFII enhances myofibroblasts glycolysis leading to kidney fibrosisPossible reference: Li, L. et al. (2021) Orphan nuclear receptor COUP-TFII enhances myofibroblast glycolysis leading to kidney fibrosis., EMBO Rep, PMID 34031962
PXD024021 Dataset with its publication pending (from PRIDE)Dataset title: Comparative phosphoproteomic analysis of tomato genotypes with contrasting cadmium tolerancePossible reference: Marques, DN. et al. (2021) Comparative phosphoproteomic analysis of tomato genotypes with contrasting cadmium tolerance., Plant Cell Rep, PMID 34410462
PXD024009 Dataset with its publication pending (from PRIDE)Dataset title: Effects of the IDH1 R132H mutation on the energy metabolism: a comparison between tissue and corresponding primary glioma cell culturesPossible reference: Dekker, LJM. et al. (2022) Effects of the IDH1 R132H Mutation on the Energy Metabolism: A Comparison between Tissue and Corresponding Primary Glioma Cell Cultures., ACS Omega, PMID 35128264
PXD023998 Dataset with its publication pending (from PRIDE)Dataset title: Uropathogenic Escherichia coli biofilm proteomicsPossible reference: Floyd, KA. et al. (2015) Adhesive fiber stratification in uropathogenic Escherichia coli biofilms unveils oxygen-mediated control of type 1 pili., PLoS Pathog, PMID 25738819
PXD023989 Dataset with its publication pending (from PRIDE)Dataset title: Phase separation and stress granule association of SARS-CoV-2 Nucleocapsid proteinPossible reference: Perdikari, TM. et al. (2020) SARS-CoV-2 nucleocapsid protein phase-separates with RNA and with human hnRNPs., EMBO J, PMID 33200826
PXD023983 Dataset with its publication pending (from PRIDE)Dataset title: Discovery of RSV-induced BRD4 protein interactions using native immunoprecipitation and parallel accumulation – serial fragmentation (PASEF) mass spectrometryPossible reference: Mann, M. et al. (2021) Discovery of RSV-Induced BRD4 Protein Interactions Using Native Immunoprecipitation and Parallel Accumulation-Serial Fragmentation (PASEF) Mass Spectrometry., Viruses, PMID 33799525
PXD023980 Dataset with its publication pending (from iProX)Dataset title: GproDIA enables intact glycopeptide characterization using dataâ€independent acquisition glycoproteomics with comprehensive statistical controlPossible reference: Yang, Y. et al. (2021) GproDIA enables data-independent acquisition glycoproteomics with comprehensive statistical control., Nat Commun, PMID 34663801
PXD023978 Dataset with its publication pending (from PRIDE)Dataset title: Unresolved stalled ribosome complexes restrict cycle progression after genotoxic stressPossible reference: Stoneley, M. et al. (2022) Unresolved stalled ribosome complexes restrict cell-cycle progression after genotoxic stress., Mol Cell, PMID 35180429
PXD023976 Dataset with its publication pending (from PRIDE)Dataset title: Unresolved stalled ribosome complexes restrict cycle progression after genotoxic stressPossible reference: Stoneley, M. et al. (2022) Unresolved stalled ribosome complexes restrict cell-cycle progression after genotoxic stress., Mol Cell, PMID 35180429
PXD023974 Dataset with its publication pending (from PRIDE)Dataset title: E2F6 initiates stable epigenetic silencing of germline genes during embryonic developmentPossible reference: Dahlet, T. et al. (2021) E2F6 initiates stable epigenetic silencing of germline genes during embryonic development., Nat Commun, PMID 34117224
PXD023966 Dataset with its publication pending (from PRIDE)Dataset title: A cis-acting mechanism mediates transcriptional memory at Polycomb target genes in mammalsPossible reference: Holoch, D. et al. (2021) A cis-acting mechanism mediates transcriptional memory at Polycomb target genes in mammals., Nat Genet, PMID 34782763
PXD023965 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic analysis of Laodelphax striatellus in response to rice stripe virus infectionPossible reference: Huang, HJ. et al. (2021) Proteomic analysis of Laodelphax striatellus in response to Rice stripe virus infection reveal a potential role of ZFP36L1 in restriction of viral proliferation., J Proteomics, PMID 33711487
PXD023951 Dataset with its publication pending (from PRIDE)Dataset title: Evaluation and Optimization of High-Field Asymmetric Waveform Ion Mobility Spectrometry for Multiplexed Quantitative Site-specific N-glycoproteomicsPossible reference: Fang, P. et al. (2021) Evaluation and Optimization of High-Field Asymmetric Waveform Ion-Mobility Spectrometry for Multiplexed Quantitative Site-Specific N-Glycoproteomics., Anal Chem, PMID 34133129
PXD023947 no publication (from MassIVE)Dataset title: The Ubiquitin Interacting Motif Like Domain of Met4 is a K48 Polyubiquitin Chain Selective Binding Domain Possible reference: Villamil, M. et al. (2022) The Ubiquitin Interacting Motif-Like Domain of Met4 Selectively Binds K48 Polyubiquitin Chains., Mol Cell Proteomics, PMID 34763062
PXD023943 Dataset with its publication pending (from PRIDE)Dataset title: Glycoproteomic and phenotypic elucidation of B4GALNT2 expression variants in the SID histo-blood group systemPossible reference: Stenfelt, L. et al. (2022) Glycoproteomic and Phenotypic Elucidation of B4GALNT2 Expression Variants in the SID Histo-Blood Group System., Int J Mol Sci, PMID 35409292
PXD023939 Dataset with its publication pending (from PRIDE)Dataset title: Mitochondrial membrane proteins and VPS35 orchestrate selective removal of mtDNAPossible reference: Sen, A. et al. (2022) Mitochondrial membrane proteins and VPS35 orchestrate selective removal of mtDNA., Nat Commun, PMID 36344526
PXD023936 Dataset with its publication pending (from PRIDE)Dataset title: Exploring the glycosylation state of the Cryptosporidium parvum CpTSP protein family-HILIC glycopeptide enrichmentPossible reference: John, A. et al. (2023) Conservation, abundance, glycosylation profile, and localization of the TSP protein family in Cryptosporidium parvum., J Biol Chem, PMID 36775128
PXD023935 Dataset with its publication pending (from PRIDE)Dataset title: Exploring the glycosylation state of the Cryptosporidium parvum CpTSP protein family-FAIMS proteomePossible reference: John, A. et al. (2023) Conservation, abundance, glycosylation profile, and localization of the TSP protein family in Cryptosporidium parvum., J Biol Chem, PMID 36775128
PXD023910 Dataset with its publication pending (from PRIDE)Dataset title: Nonsense-mediated decay in Plasmodium falciparumPossible reference: McHugh, E. et al. (2023) Nonsense-mediated decay machinery in Plasmodium falciparum is inefficient and non-essential., mSphere, PMID 37366629
PXD023878 Dataset with its publication pending (from PRIDE)Dataset title: Unresolved stalled ribosome complexes restrict cycle progression after genotoxic stressPossible reference: Stoneley, M. et al. (2022) Unresolved stalled ribosome complexes restrict cell-cycle progression after genotoxic stress., Mol Cell, PMID 35180429
PXD023873 Dataset with its publication pending (from PRIDE)Dataset title: AMPylation profiling during neuronal differentiation reveals extensive variation on lysosomal proteinsPossible reference: Becker, T. et al. (2021) AMPylation profiling during neuronal differentiation reveals extensive variation on lysosomal proteins., iScience, PMID 34917898
PXD023861 Dataset with its publication pending (from PRIDE)Dataset title: Unresolved stalled ribosome complexes restrict cycle progression after genotoxic stressPossible reference: Stoneley, M. et al. (2022) Unresolved stalled ribosome complexes restrict cell-cycle progression after genotoxic stress., Mol Cell, PMID 35180429
PXD023859 Dataset with its publication pending (from PRIDE)Dataset title: Sex differences in the ventral tegmental area and nucleus accumbens proteome at baseline and following nicotine exposurePossible reference: Lee, AM. et al. (2021) Sex Differences in the Ventral Tegmental Area and Nucleus Accumbens Proteome at Baseline and Following Nicotine Exposure., Front Mol Neurosci, PMID 34335180
PXD023858 Dataset with its publication pending (from PRIDE)Dataset title: Response of the thermoacidophilic Archaeon Sulfolobus acidocaldarius to solvent stressPossible reference: Benninghoff, JC. et al. (2021) Exposure to 1-Butanol Exemplifies the Response of the Thermoacidophilic Archaeon Sulfolobus acidocaldarius to Solvent Stress., Appl Environ Microbiol, PMID 33741627
PXD023855 Dataset with its publication pending (from PanoramaPublic)Dataset title: RGI-GOLVEN signalling promotes FLS2 abundance to regulate plant immunityPossible reference: Stegmann, M. et al. (2022) RGI-GOLVEN signaling promotes cell surface immune receptor abundance to regulate plant immunity., EMBO Rep, PMID 35229426
PXD023854 Dataset with its publication pending (from PRIDE)Dataset title: Quantitative proteomic analysis of Toxoplasma gondii mutants of the mitochondrial and plastidic Iron sulfur cluster synthesis pathways.Possible reference: Pamukcu, S. et al. (2021) Differential contribution of two organelles of endosymbiotic origin to iron-sulfur cluster synthesis and overall fitness in Toxoplasma., PLoS Pathog, PMID 34793583
PXD023853 Dataset with its publication pending (from PRIDE)Dataset title: OXI1 coordinates programmed cell death by promoting salicylic acid, N-hydroxypipecolic acid and reactive oxygen species accumulation in ArabidopsisPossible reference: Rawat, AA. et al. (2023) OXIDATIVE SIGNAL-INDUCIBLE1 induces immunity by coordinating N-hydroxypipecolic acid, salicylic acid, and camalexin synthesis., New Phytol, PMID 36319610
PXD023851 Dataset with its publication pending (from PRIDE)Dataset title: IgE antibodies increase honeybee venom responsiveness and detoxification efficiency of mast cellsPossible reference: Starkl, P. et al. (2022) IgE antibodies increase honeybee venom responsiveness and detoxification efficiency of mast cells., Allergy, PMID 33840121
PXD023834 Dataset with its publication pending (from PRIDE)Dataset title: A type I IFN, prothrombotic hyperinflammatory neutrophil signature is distinct for COVID-19 ARDSPossible reference: Reyes, L. et al. (2021) -------A type I IFN, prothrombotic hyperinflammatory neutrophil signature is distinct for COVID-19 ARDS--., Wellcome Open Res, PMID 33997298
PXD023822 Dataset with its publication pending (from PRIDE)Dataset title: Impact of sulfamethoxazole on a riverine microbiomePossible reference: Borsetto, C. et al. (2021) Impact of sulfamethoxazole on a riverine microbiome., Water Res, PMID 34225233
PXD023814 Dataset with its publication pending (from PRIDE)Dataset title: Mapping AT1R biased signaling using proximity-labeling and proteomics identifies diverse actions of biased agonistsPossible reference: Pfeiffer, CT. et al. (2021) Mapping Angiotensin II Type 1 Receptor-Biased Signaling Using Proximity Labeling and Proteomics Identifies Diverse Actions of Biased Agonists., J Proteome Res, PMID 33950683
PXD023811 Dataset with its publication pending (from PRIDE)Dataset title: Staphylococcus aureus Trigger factor is involved in biofilm formation and cooperates with the chaperone PpiBPossible reference: Keogh, RA. et al. (2021) Staphylococcus aureus Trigger Factor Is Involved in Biofilm Formation and Cooperates with the Chaperone PpiB., J Bacteriol, PMID 33468596
PXD023803 no publication (from MassIVE)Dataset title: Phosphoproteomics of ATR Signaling in Prophase I of Mouse MeiosisPossible reference: Sims, JR. et al. (2022) Phosphoproteomics of ATR signaling in mouse testes., Elife, PMID 35133275
PXD023802 Dataset with its publication pending (from PRIDE)Dataset title: Heading towards a dead end: the role of DND1 in germ line differentiation of human iPSCsPossible reference: Mall, EM. et al. (2021) Heading towards a dead end: The role of DND1 in germ line differentiation of human iPSCs., PLoS One, PMID 34653201
PXD023794 no publication (from MassIVE)Dataset title: Triazine pyridine chemistry for selective tyrosine labelling of proteinsPossible reference: Sequist, LV. et al. (2020) Osimertinib plus savolitinib in patients with EGFR mutation-positive, MET-amplified, non-small-cell lung cancer after progression on EGFR tyrosine kinase inhibitors: interim results from a multicentre, open-label, phase 1b study., Lancet Oncol, PMID 32027846
PXD023786 Dataset with its publication pending (from PRIDE)Dataset title: SNAPIN regulates β cell cycle progression to promote pancreatic β cell growthPossible reference: Jiang, M. et al. (2021) SNAPIN Regulates Cell Cycle Progression to Promote Pancreatic β Cell Growth., Front Endocrinol (Lausanne), PMID 34194388
PXD023764 no publication (from MassIVE)Dataset title: Multi-platform omics analysis of Nipah virus infection reveals viral glycoprotein modulation of mitochondria: proteomicsPossible reference: Johnston, GP. et al. (2025) Multi-platform omics analysis of Nipah virus infection reveals viral glycoprotein modulation of mitochondria., Cell Rep, PMID 40106432
PXD023756 Dataset with its publication pending (from PRIDE)Dataset title: Comparative Proteomic Analysis of Fucosylated Glycoproteins in Bacteroides thetaiotaomicron under Different Polysaccharide Nutrition ConditionsPossible reference: Tian, X. et al. (2022) Comparative Proteomic Analysis of Fucosylated Glycoproteins Produced by Bacteroides thetaiotaomicron Under Different Polysaccharide Nutrition Conditions., Front Microbiol, PMID 35308349
PXD023754 Dataset with its publication pending (from PRIDE)Dataset title: ACE2 independent SARS-CoV-2 infection of a human lung cell linePossible reference: Yamamoto, M. et al. (2020) The Anticoagulant Nafamostat Potently Inhibits SARS-CoV-2 S Protein-Mediated Fusion in a Cell Fusion Assay System and Viral Infection In Vitro in a Cell-Type-Dependent Manner., Viruses, PMID 32532094
PXD023749 Dataset with its publication pending (from PRIDE)Dataset title: Extracellular vesicles shed by follicular lymphoma B cells promote the polarization of bone marrow stromal cell nichePossible reference: Dumontet, E. et al. (2021) Extracellular vesicles shed by follicular lymphoma B cells promote polarization of the bone marrow stromal cell niche., Blood, PMID 33881493
PXD023745 no publication (from MassIVE)Dataset title: A BLOOD BANK STANDARDIZED PRODUCTION OF HUMAN PLATELET LYSATE FOR MESENCHYMAL STROMAL CELLS EXPANSION: PROTEOMIC CHARACTERIZATION AND BIOLOGICAL EFFECTSPossible reference: Bianchetti, A. et al. (2021) A Blood Bank Standardized Production of Human Platelet Lysate for Mesenchymal Stromal Cell Expansion: Proteomic Characterization and Biological Effects., Front Cell Dev Biol, PMID 34055779
PXD023743 no publication (from MassIVE)Dataset title: Selective inhibition reveals the regulatory function of DYRK2 in protein synthesis and calcium entryPossible reference: Wei, T. et al. (2022) Selective inhibition reveals the regulatory function of DYRK2 in protein synthesis and calcium entry., Elife, PMID 35439114
PXD023732 Dataset with its publication pending (from PRIDE)Dataset title: PROBER Identifies Proteins Associated with Sequence- Specific DNA in Living CellsPossible reference: Mondal, S. et al. (2022) PROBER identifies proteins associated with programmable sequence-specific DNA in living cells., Nat Methods, PMID 35927480
PXD023729 Dataset with its publication pending (from PRIDE)Dataset title: Escherichia coli proteome during outgrowth from stationary phasePossible reference: Hoch, PG. et al. (2015) Phenotypic characterization and complementation analysis of Bacillus subtilis 6S RNA single and double deletion mutants., Biochimie, PMID 25576829
PXD023720 Dataset with its publication pending (from PRIDE)Dataset title: Quantitative Proteomic Analysis in Alveolar Type II Cells Reveals the Different Capacities of RAS and TGF-β to Induce Epithelial–Mesenchymal TransitionPossible reference: Zhou, Y. et al. (2021) Quantitative Proteomic Analysis in Alveolar Type II Cells Reveals the Different Capacities of RAS and TGF-β to Induce Epithelial-Mesenchymal Transition., Front Mol Biosci, PMID 33869273
PXD023712 Dataset with its publication pending (from PRIDE)Dataset title: The esterase PfeE, Achilles heel in the battle for iron between Pseudomonas aeruginosa and Escherichia coliPossible reference: Gasser, V. et al. (2021) The Esterase PfeE, the Achilles' Heel in the Battle for Iron between Pseudomonas aeruginosa and Escherichia coli., Int J Mol Sci, PMID 33802163
PXD023707 Dataset with its publication pending (from PRIDE)Dataset title: Profiling of the human Fallopian tube matrisomePossible reference: Renner, C. et al. (2022) Multi-modal Profiling of the Extracellular Matrix of Human Fallopian Tubes and Serous Tubal Intraepithelial Carcinomas., J Histochem Cytochem, PMID 34866441
PXD023705 Dataset with its publication pending (from PRIDE)Dataset title: Tissue extracellular matrix hydrogels as alternative to Matrigel for culturing gastrointestinal organoidPossible reference: Cherne, MD. et al. (2021) A Synthetic Hydrogel, VitroGel® ORGANOID-3, Improves Immune Cell-Epithelial Interactions in a Tissue Chip Co-Culture Model of Human Gastric Organoids and Dendritic Cells., Front Pharmacol, PMID 34552484
PXD023701 Dataset with its publication pending (from PRIDE)Dataset title: Scaffold-free 3D cell culture of primary skin fibroblasts induces profound changes of the matrisomePossible reference: Vu, B. et al. (2021) Scaffold-free 3D cell culture of primary skin fibroblasts induces profound changes of the matrisome., Matrix Biol Plus, PMID 34435183
PXD023694 Dataset with its publication pending (from PRIDE)Dataset title: Tissue extracellular matrix hydrogels as alternative to Matrigel for culturing gastrointestinal organoidsPossible reference: Cherne, MD. et al. (2021) A Synthetic Hydrogel, VitroGel® ORGANOID-3, Improves Immune Cell-Epithelial Interactions in a Tissue Chip Co-Culture Model of Human Gastric Organoids and Dendritic Cells., Front Pharmacol, PMID 34552484
PXD023685 Dataset with its publication pending (from PRIDE)Dataset title: SEVERE CONSEQUENCES OF A HIGH-LIPID DIET INCLUDE HYDROGEN SULFIDE DYSFUNCTION AND DISEASE AGGRESSION IN GLIOBLASTOMAPossible reference: Silver, DJ. et al. (2021) Severe consequences of a high-lipid diet include hydrogen sulfide dysfunction and enhanced aggression in glioblastoma., J Clin Invest, PMID 34255747
PXD023676 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic analysis identifies novel BRCA1-associated protein 1 binding proteinsPossible reference: Baas, R. et al. (2021) Proteomic analysis identifies novel binding partners of BAP1., PLoS One, PMID 34591877
PXD023653 Dataset with its publication pending (from PRIDE)Dataset title: Elp2 mutations perturb the epitranscriptome and lead to a complex neurodevelopmental phenotypePossible reference: Kojic, M. et al. (2021) Elp2 mutations perturb the epitranscriptome and lead to a complex neurodevelopmental phenotype., Nat Commun, PMID 33976153
PXD023649 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic analysis of Flavobacterium johnsoniaePossible reference: Fang, X. et al. (2015) [Construction and application of bioinformatic analysis platform for aquatic pathogen based on the MilkyWay-2 supercomputer]., Yi Chuan, PMID 26351170
PXD023645 Dataset with its publication pending (from PRIDE)Dataset title: The strategy of a novel way to enhance bacterial motilityPossible reference: Orrskog, S. et al. (2012) Pilus adhesin RrgA interacts with complement receptor 3, thereby affecting macrophage function and systemic pneumococcal disease., mBio, PMID 23269830
PXD023641 no publication (from MassIVE)Dataset title: Atase1 and Atase2 differentially regulate reticulophagy and cellular acetyl-CoA metabolismPossible reference: Rigby, MJ. et al. (2021) Endoplasmic reticulum acetyltransferases Atase1 and Atase2 differentially regulate reticulophagy, macroautophagy and cellular acetyl-CoA metabolism., Commun Biol, PMID 33846551
PXD023639 no publication (from MassIVE)Dataset title: The tumor suppressor kinase DAPK3 drives tumor-intrinsic immunity through the STING-IFNb pathway ProteomePossible reference: Takahashi, M. et al. (2021) The tumor suppressor kinase DAPK3 drives tumor-intrinsic immunity through the STING-IFN-β pathway., Nat Immunol, PMID 33767426
PXD023637 no publication (from MassIVE)Dataset title: The tumor suppressor kinase DAPK3 drives tumor-intrinsic immunity through the STING-IFNb pathway PhosphoPossible reference: Takahashi, M. et al. (2021) The tumor suppressor kinase DAPK3 drives tumor-intrinsic immunity through the STING-IFN-β pathway., Nat Immunol, PMID 33767426
PXD023633 Dataset with its publication pending (from PRIDE)Dataset title: Chemo-proteomics exploration of HDAC degradability by small molecule degradersPossible reference: Xiong, Y. et al. (2021) Chemo-proteomics exploration of HDAC degradability by small molecule degraders., Cell Chem Biol, PMID 34314730
PXD023630 Dataset with its publication pending (from PRIDE)Dataset title: Chemo-proteomics exploration of HDAC degradability by small molecule degradersPossible reference: Xiong, Y. et al. (2021) Chemo-proteomics exploration of HDAC degradability by small molecule degraders., Cell Chem Biol, PMID 34314730
PXD023612 Dataset with its publication pending (from PRIDE)Dataset title: Allergenicity Assessment and Allergen Profile Analysis of Different Chinese Wheat CultivarsPossible reference: Wang, Y. et al. (2021) Allergenicity assessment and allergen profile analysis of different Chinese wheat cultivars., World Allergy Organ J, PMID 34257797
PXD023608 Dataset with its publication pending (from PRIDE)Dataset title: Time-resolved proteome analysis of Listeria monocytogenes during infection reveals the role of the AAA+ chaperone ClpC for host cell adaptationPossible reference: Birk, MS. et al. (2021) Time-Resolved Proteome Analysis of Listeria monocytogenes during Infection Reveals the Role of the AAA+ Chaperone ClpC for Host Cell Adaptation., mSystems, PMID 34342529
PXD023601 Dataset with its publication pending (from PRIDE)Dataset title: Nitric Oxide Is Associated with Heterosis of Salinity Tolerance in Brassica napus L.Possible reference: Zhang, Y. et al. (2021) Nitric Oxide Is Associated With Heterosis of Salinity Tolerance in Brassica napus L., Front Plant Sci, PMID 34122475
PXD023591 Dataset with its publication pending (from PRIDE)Dataset title: Orthogonal degron system for controlled protein degradation in cyanobacteriaPossible reference: Sakkos, JK. et al. (2021) Orthogonal Degron System for Controlled Protein Degradation in Cyanobacteria., ACS Synth Biol, PMID 34232633
PXD023562 Dataset with its publication pending (from PRIDE)Dataset title: Broad Kinase Inhibition Mitigates Early Neuronal Dysfunction in TauopathyPossible reference: Koren, SA. et al. (2021) Broad Kinase Inhibition Mitigates Early Neuronal Dysfunction in Tauopathy., Int J Mol Sci, PMID 33530349
PXD023553 Dataset with its publication pending (from PRIDE)Dataset title: Discovery and evaluation of protein biomarkers as a signature of wellness in late stage cancer patients in early phase clinical trialsPossible reference: Geary, B. et al. (2021) Discovery and Evaluation of Protein Biomarkers as a Signature of Wellness in Late-Stage Cancer Patients in Early Phase Clinical Trials., Cancers (Basel), PMID 34069985
PXD023550 Dataset with its publication pending (from PRIDE)Dataset title: The Pentose Phosphate Pathway in pathogenic FrancisellaPossible reference: Chen, F. et al. (2017) Differential Substrate Usage and Metabolic Fluxes in Francisella tularensis Subspecies holarctica and Francisella novicida., Front Cell Infect Microbiol, PMID 28680859
PXD023547 Dataset with its publication pending (from PRIDE)Dataset title: Defining Essential Regulators of Naïve Human Pluripotent Cell ReprogrammingPossible reference: Collier, AJ. et al. (2022) Genome-wide screening identifies Polycomb repressive complex 1.3 as an essential regulator of human naïve pluripotent cell reprogramming., Sci Adv, PMID 35333572
PXD023543 Dataset with its publication pending (from PRIDE)Dataset title: Comparative proteomic analysis of different parts of Taenia hydatigenaPossible reference: Cai, M. et al. (2021) Comparative Proteomic Analysis of Different Parts of Taenia Hydatigena., Front Vet Sci, PMID 33981740
PXD023542 Dataset with its publication pending (from PRIDE)Dataset title: Targeted in situ cross-linking for determination of structure and interactions of SARS-CoV-2 proteins in the cellular contextPossible reference: Slavin, M. et al. (2021) Targeted in situ cross-linking mass spectrometry and integrative modeling reveal the architectures of three proteins from SARS-CoV-2., Proc Natl Acad Sci U S A, PMID 34373319
PXD023534 no publication (from MassIVE)Dataset title: Cardiac proteome of Western painted turtlePossible reference: Alderman, SL. et al. (2021) Cold acclimation induces life stage-specific responses in the cardiac proteome of western painted turtles (Chrysemys picta bellii): implications for anoxia tolerance., J Exp Biol, PMID 34328184
PXD023530 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic characterization of bacteriophage peptides from mastitis producer Staphylococcus aureus by LC-ESI-MS/MS and their bacteriophage phylogenomic analysisPossible reference: Abril, AG. et al. (2021) Proteomic Characterization of Bacteriophage Peptides from the Mastitis Producer Staphylococcus aureus by LC-ESI-MS/MS and the Bacteriophage Phylogenomic Analysis., Foods, PMID 33917943
PXD023521 Dataset with its publication pending (from PRIDE)Dataset title: A longitudinal study of COVID-19 patients using proteomics approachPossible reference: He, F. et al. (2021) Fecal multi-omics analysis reveals diverse molecular alterations of gut ecosystem in COVID-19 patients., Anal Chim Acta, PMID 34538334
PXD023506 Dataset with its publication pending (from PRIDE)Dataset title: Sexual dimorphism in zebrafish heart associated proteinsPossible reference: Frints, SGM. et al. (2019) Deleterious de novo variants of X-linked ZC4H2 in females cause a variable phenotype with neurogenic arthrogryposis multiplex congenita., Hum Mutat, PMID 31206972
PXD023491 Dataset with its publication pending (from PRIDE)Dataset title: A long-term 3D organoid (tubuloid) model of the adult mouse kidneyPossible reference: Myszczyszyn, A. et al. (2024) Mice with renal-specific alterations of stem cell-associated signaling develop symptoms of chronic kidney disease but surprisingly no tumors., PLoS One, PMID 38512983
PXD023459 Dataset with its publication pending (from PRIDE)Dataset title: Stenotrophomonas bentonitica BII-R7proteome in presence of Se(IV)Possible reference: Ruiz-Fresneda, MA. et al. (2023) Combined bioreduction and volatilization of SeVI by Stenotrophomonas bentonitica: Formation of trigonal selenium nanorods and methylated species., Sci Total Environ, PMID 36356742
PXD023450 Dataset with its publication pending (from PRIDE)Dataset title: Type-I interferon signatures in SARS-CoV-2 infected Huh7 cellsPossible reference: Chen, X. et al. (2021) Type-I interferon signatures in SARS-CoV-2 infected Huh7 cells., Cell Death Discov, PMID 34006825
PXD023446 no publication (from MassIVE)Dataset title: Elucidation of Familial Relationships Using Hair Shaft ProteomicsPossible reference: Karim, N. et al. (2021) Elucidation of familial relationships using hair shaft proteomics., Forensic Sci Int Genet, PMID 34315035
PXD023433 Dataset with its publication pending (from PRIDE)Dataset title: Stress-induced tyrosine phosphorylation of RtcB modulates IRE1 activity and signaling outputs.Possible reference: Papaioannou, A. et al. (2022) Stress-induced tyrosine phosphorylation of RtcB modulates IRE1 activity and signaling outputs., Life Sci Alliance, PMID 35193953
PXD023431 Dataset with its publication pending (from PRIDE)Dataset title: Secretomic analysis of a novel strain SM1988Possible reference: Li, J. et al. (2021) Taxonomic and Enzymatic Characterization of Flocculibacter collagenilyticus gen. nov., sp. nov., a Novel Gammaproteobacterium With High Collagenase Production., Front Microbiol, PMID 33786038
PXD023421 no publication (from MassIVE)Dataset title: The Campylobacter jejuni CiaD effector co-opts the host cell protein IQGAP1 to promote cell entryPossible reference: Negretti, NM. et al. (2021) The Campylobacter jejuni CiaD effector co-opts the host cell protein IQGAP1 to promote cell entry., Nat Commun, PMID 33637714
PXD023396 Dataset with its publication pending (from PRIDE)Dataset title: Secretome Analysis of Anoxybacillus caldiproteolyticus 1A02591Possible reference: Cheng, JH. et al. (2021) Characterization and Diversity Analysis of the Extracellular Proteases of Thermophilic Anoxybacillus caldiproteolyticus 1A02591 From Deep-Sea Hydrothermal Vent Sediment., Front Microbiol, PMID 33796092
PXD023361 Dataset with its publication pending (from PRIDE)Dataset title: The Cdk8 kinase module regulates Mediator-RNA polymerase II interactionPossible reference: Tsai, KL. et al. (2013) A conserved Mediator-CDK8 kinase module association regulates Mediator-RNA polymerase II interaction., Nat Struct Mol Biol, PMID 23563140
PXD023357 Dataset with its publication pending (from PRIDE)Dataset title: Metaproteogenomic profiling of chemosynthetic microbial biofilms reveals metabolic flexibility during colonization of a shallow-water gas ventPossible reference: Patwardhan, S. et al. (2021) Metaproteogenomic Profiling of Chemosynthetic Microbial Biofilms Reveals Metabolic Flexibility During Colonization of a Shallow-Water Gas Vent., Front Microbiol, PMID 33889140
PXD023333 Dataset with its publication pending (from jPOST)Dataset title: Proteome analysis of high affinity mouse C3H/HeN saliva-1proteins to hydroxyapatitePossible reference: Ohshima, K. et al. (2022) Proteome analysis of high affinity mouse saliva proteins to hydroxyapatite., Heliyon, PMID 36033281
PXD023332 Dataset with its publication pending (from jPOST)Dataset title: Proteome analysis of high affinity mouse BALB/cA saliva-1proteins to hydroxyapatitePossible reference: Ohshima, K. et al. (2022) Proteome analysis of high affinity mouse saliva proteins to hydroxyapatite., Heliyon, PMID 36033281
PXD023331 no publication (from MassIVE)Dataset title: Phosphoproteomic Response of Cardiac Endothelial Cells to Ischemic Injury and UltrasoundPossible reference: Emechebe, U. et al. (2021) Phosphoproteomic response of cardiac endothelial cells to ischemia and ultrasound., Biochim Biophys Acta Proteins Proteom, PMID 34119693
PXD023314 Dataset with its publication pending (from PRIDE)Dataset title: TMT-based quantitative proteomic analysis reveals defense mechanism of wheat against the crown rot pathogen Fusarium pseudograminearumPossible reference: Qiao, F. et al. (2021) TMT-based quantitative proteomic analysis reveals defense mechanism of wheat against the crown rot pathogen Fusarium pseudograminearum., BMC Plant Biol, PMID 33557748
PXD023311 Dataset with its publication pending (from PRIDE)Dataset title: Novel Proteome and N-glycoproteome of the Thermophilic Fungus Chaetomium thermophilugm in Response to High TemperaturePossible reference: Gao, J. et al. (2021) Novel Proteome and N-Glycoproteome of the Thermophilic Fungus Chaetomium thermophilum in Response to High Temperature., Front Microbiol, PMID 34163440
PXD023292 Dataset with its publication pending (from PRIDE)Dataset title: N-degradomic analysis of proteolytic processing in WT1 heterozygous micePossible reference: Rinschen, MM. et al. (2017) N-Degradomic Analysis Reveals a Proteolytic Network Processing the Podocyte Cytoskeleton., J Am Soc Nephrol, PMID 28724775
PXD023289 Dataset with its publication pending (from PRIDE)Dataset title: The GORKY Glycoalkaloid Transporter is Indispensable for Preventing Tomato BitternessPossible reference: Kazachkova, Y. et al. (2021) The GORKY glycoalkaloid transporter is indispensable for preventing tomato bitterness., Nat Plants, PMID 33707737
PXD023282 Dataset with its publication pending (from iProX)Dataset title: iTRAQ-TMT mass spectrometry in K562 cellsPossible reference: Savitski, MM. et al. (2013) Measuring and managing ratio compression for accurate iTRAQ/TMT quantification., J Proteome Res, PMID 23768245
PXD023255 no publication (from MassIVE)Dataset title: Genetic inactivation of RIP1 kinase activity in rats protects against ischemic brain injuryPossible reference: Stark, K. et al. (2021) Genetic inactivation of RIP1 kinase activity in rats protects against ischemic brain injury., Cell Death Dis, PMID 33828080
PXD023244 Dataset with its publication pending (from PRIDE)Dataset title: Bioinformatic analysis of the wound peptidome reveals potential biomarkers and antimicrobial peptidesPossible reference: Hartman, E. et al. (2020) Bioinformatic Analysis of the Wound Peptidome Reveals Potential Biomarkers and Antimicrobial Peptides., Front Immunol, PMID 33613550
PXD023228 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic analysis of the secretome of seven Leishmania speciesPossible reference: Pissarra, J. et al. (2022) Proteomic Analysis of the Promastigote Secretome of Seven Leishmania Species., J Proteome Res, PMID 34806897
PXD023218 Dataset with its publication pending (from PRIDE)Dataset title: Linking post-translational modifications and protein turnover by site-resolved protein turnover (SPOT) profilingPossible reference: Zecha, J. et al. (2022) Linking post-translational modifications and protein turnover by site-resolved protein turnover profiling., Nat Commun, PMID 35013197
PXD023209 Dataset with its publication pending (from PRIDE)Dataset title: Comprehensive analysis of the host-virus interactome of SARS-CoV-2Possible reference: Kamel, W. et al. (2021) Global analysis of protein-RNA interactions in SARS-CoV-2-infected cells reveals key regulators of infection., Mol Cell, PMID 34118193
PXD023190 Dataset with its publication pending (from PRIDE)Dataset title: Human blood microRNAs and their potential effect on mosquitoesPossible reference: Shahen, M. et al. (2018) Dengue virus causes changes of MicroRNA-genes regulatory network revealing potential targets for antiviral drugs., BMC Syst Biol, PMID 29301573
PXD023167 Dataset with its publication pending (from PRIDE)Dataset title: Systematic profiling of protein complex dynamics reveals DNA-PK phosphorylation of IFI16 en route to herpesvirus immunityPossible reference: Justice, JL. et al. (2021) Systematic profiling of protein complex dynamics reveals DNA-PK phosphorylation of IFI16 en route to herpesvirus immunity., Sci Adv, PMID 34144993
PXD023143 Dataset with its publication pending (from PRIDE)Dataset title: Immunopeptidome of isolated patient- derived hepatocytes in Hepatitis B viral infection and hepatocellular carcinomaPossible reference: de Beijer, MTA. et al. (2022) Immunopeptidome of hepatocytes isolated from patients with HBV infection and hepatocellular carcinoma., JHEP Rep, PMID 36185575
PXD023142 Dataset with its publication pending (from PRIDE)Dataset title: Serine biosynthesis is a metabolic vulnerability in IDH2-driven breast cancer progressionPossible reference: Barnabas, GD. et al. (2021) Serine Biosynthesis Is a Metabolic Vulnerability in IDH2-Driven Breast Cancer Progression., Cancer Res, PMID 33500247
PXD023138 Dataset with its publication pending (from PRIDE)Dataset title: SARS-CoV-2 S protein ACE2 interaction reveals novel allosteric targetsPossible reference: Meirson, T. et al. (2021) Structural basis of SARS-CoV-2 spike protein induced by ACE2., Bioinformatics, PMID 32818261
PXD023135 Dataset with its publication pending (from PRIDE)Dataset title: Dysregulation of the cGAS/STING axis due to COPI-deficiencyPossible reference: Mathavarajah, S. et al. (2019) An emerging role for calcium signalling in innate and autoimmunity via the cGAS-STING axis., Cytokine Growth Factor Rev, PMID 30955997
PXD023126 Dataset with its publication pending (from PRIDE)Dataset title: The type III secretion system effector EspO of enterohemorrhagic Escherichia coli inhibits apoptosis through an interaction with HAX-1Possible reference: Chatterjee, S. et al. (2021) The type III secretion system effector EspO of enterohaemorrhagic Escherichia coli inhibits apoptosis through an interaction with HAX-1., Cell Microbiol, PMID 34021690
PXD023124 Dataset with its publication pending (from PRIDE)Dataset title: Nucleotide sugar biosynthesis occurs in the glycosomes of procyclic and bloodstream form Trypanosoma bruceiPossible reference: Sampaio Guther, ML. et al. (2021) Nucleotide sugar biosynthesis occurs in the glycosomes of procyclic and bloodstream form Trypanosoma brucei., PLoS Negl Trop Dis, PMID 33592041
PXD023122 Dataset with its publication pending (from PRIDE)Dataset title: Pseudouridine-modified tRNA fragments repress malignant protein synthesis and predict leukemic progression in myelodysplastic syndromePossible reference: Guzzi, N. et al. (2022) Pseudouridine-modified tRNA fragments repress aberrant protein synthesis and predict leukaemic progression in myelodysplastic syndrome., Nat Cell Biol, PMID 35292784
PXD023121 Dataset with its publication pending (from PRIDE)Dataset title: FAM83F regulates canonical Wnt signalling through an interaction with CK1αPossible reference: Dunbar, K. et al. (2021) FAM83F regulates canonical Wnt signalling through an interaction with CK1α., Life Sci Alliance, PMID 33361109
PXD023116 Dataset with its publication pending (from PRIDE)Dataset title: Quantitative Beer SWATH-MS ProteomicsPossible reference: Schulz, BL. et al. (2018) Process Proteomics of Beer Reveals a Dynamic Proteome with Extensive Modifications., J Proteome Res, PMID 29457908
PXD023109 Dataset with its publication pending (from PRIDE)Dataset title: Protein-based vaccine protect against Piscirickettsia salmonis in Atlantic salmon (Salmo salar)Possible reference: Pontigo, JP. et al. (2021) Protein-Based Vaccine Protect Against Piscirickettsia salmonis in Atlantic Salmon (Salmo salar)., Front Immunol, PMID 33679740
PXD023096 Dataset with its publication pending (from PRIDE)Dataset title: : The effects of chronic morphine on the endogenous cannabinoid system in the ventral tegmental areaPossible reference: Zhang, H. et al. (2021) The Effects of Repeated Morphine Treatment on the Endogenous Cannabinoid System in the Ventral Tegmental Area., Front Pharmacol, PMID 33953672
PXD023092 Dataset with its publication pending (from PRIDE)Dataset title: Galactolipid and Phospholipid Profile and Proteome Alterations in Soybean Leaves at the Onset of Salt StressPossible reference: Liu, A. et al. (2021) Galactolipid and Phospholipid Profile and Proteome Alterations in Soybean Leaves at the Onset of Salt Stress., Front Plant Sci, PMID 33815451
PXD023091 Dataset with its publication pending (from PRIDE)Dataset title: Glycosylation Limits Forward Trafficking of the Tetraspan Membrane Protein PMP22Possible reference: Marinko, JT. et al. (2021) Glycosylation limits forward trafficking of the tetraspan membrane protein PMP22., J Biol Chem, PMID 33933451
PXD023086 Dataset with its publication pending (from PRIDE)Dataset title: African swine fever virus ubiquitinconjugating enzyme interacts with host translation machinery to regulate the host protein synthesisPossible reference: Barrado-Gil, L. et al. (2020) African Swine Fever Virus Ubiquitin-Conjugating Enzyme Interacts With Host Translation Machinery to Regulate the Host Protein Synthesis., Front Microbiol, PMID 33384682
PXD023064 Dataset with its publication pending (from PRIDE)Dataset title: Systematic HLA Epitope Ranking Pan Algorithm (SHERPA)Possible reference: Pyke, RM. et al. (2023) Precision Neoantigen Discovery Using Large-Scale Immunopeptidomes and Composite Modeling of MHC Peptide Presentation., Mol Cell Proteomics, PMID 36796642
PXD023050 Dataset with its publication pending (from PRIDE)Dataset title: High levels of TFAM repress in vivo transcription of mitochondrial DNAPossible reference: Bonekamp, NA. et al. (2021) High levels of TFAM repress mammalian mitochondrial DNA transcription in vivo., Life Sci Alliance, PMID 34462320
PXD023048 Dataset with its publication pending (from PRIDE)Dataset title: iTRAQ-based proteomic analysis of dentate gyrus in temporal lobe epilepsy with hippocampal sclerosisPossible reference: Xiao, W. et al. (2020) iTRAQ-Based Proteomic Analysis of Dentate Gyrus in Temporal Lobe Epilepsy With Hippocampal Sclerosis., Front Neurol, PMID 33569037
PXD023047 Dataset with its publication pending (from PRIDE)Dataset title: Arabidopsis EARLY RESPONSIVE TO DEHYDRATION 7 associates with lipid droplets via its senescence domainPossible reference: Doner, NM. et al. (2021) Arabidopsis thaliana EARLY RESPONSIVE TO DEHYDRATION 7 Localizes to Lipid Droplets via Its Senescence Domain., Front Plant Sci, PMID 33936146
PXD023045 Dataset with its publication pending (from PRIDE)Dataset title: Mycofactocin is critical for Mycobacterium tuberculosis adaptation into microaerophilic conditionsPossible reference: Krishnamoorthy, G. et al. (2021) Role of Premycofactocin Synthase in Growth, Microaerophilic Adaptation, and Metabolism of Mycobacterium tuberculosis., mBio, PMID 34311585
PXD023039 Dataset with its publication pending (from PRIDE)Dataset title: Staphylococcus aureus responds to physiologically relevant temperature changes by altering its global transcript and protein profilePossible reference: Bastock, RA. et al. (2021) Staphylococcus aureus Responds to Physiologically Relevant Temperature Changes by Altering Its Global Transcript and Protein Profile., mSphere, PMID 33731473
PXD023019 Dataset with its publication pending (from PRIDE)Dataset title: Isoginkgetin derivative IP2 enhances the adaptive immune response against tumor antigensPossible reference: Darrigrand, R. et al. (2021) Isoginkgetin derivative IP2 enhances the adaptive immune response against tumor antigens., Commun Biol, PMID 33649389
PXD023013 Dataset with its publication pending (from PRIDE)Dataset title: Proteome-wide analysis of Lysine 2-Hydroxyisobutyrylation in Candida albicansPossible reference: Zheng, H. et al. (2021) Proteome-Wide Analysis of Lysine 2-Hydroxyisobutyrylation in Candida albicans., mSystems, PMID 33531408
PXD023011 Dataset with its publication pending (from PRIDE)Dataset title: Lysine lactylation critically regulated energy metabolism of the protozoan parasite Trypanosoma bruceiPossible reference: Zhang, N. et al. (2021) Protein Lactylation Critically Regulates Energy Metabolism in the Protozoan Parasite Trypanosoma brucei., Front Cell Dev Biol, PMID 34722503
PXD022992 Dataset with its publication pending (from PRIDE)Dataset title: Data-independent Acquisition-based Proteome and Phosphoproteome Profiling across Six Melanoma Cell LinesPossible reference: Gao, E. et al. (2021) Data-independent acquisition-based proteome and phosphoproteome profiling across six melanoma cell lines reveals determinants of proteotypes., Mol Omics, PMID 33728422
PXD022988 Dataset with its publication pending (from PRIDE)Dataset title: Counterion Optimization Dramatically Improves Selectivity for Phosphopeptides and Glycopeptides in Electrostatic Repulsion-Hydrophilic Interaction Chromatography (ERLIC)Possible reference: Cui, Y. et al. (2021) Counterion Optimization Dramatically Improves Selectivity for Phosphopeptides and Glycopeptides in Electrostatic Repulsion-Hydrophilic Interaction Chromatography., Anal Chem, PMID 34042420
PXD022985 Dataset with its publication pending (from PRIDE)Dataset title: PDGFR signaling in recessive dystrophic epidermolysis bullosaPossible reference: Iinuma, S. et al. (2015) Transplanted bone marrow-derived circulating PDGFRα+ cells restore type VII collagen in recessive dystrophic epidermolysis bullosa mouse skin graft., J Immunol, PMID 25601922
PXD022979 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic identification of the UDP-GlcNAc : PI α1-6 GlcNAc-transferase subunits of the glycosylphosphatidylinositol biosynthetic pathway of Trypanosoma brucei.Possible reference: Ji, Z. et al. (2021) Proteomic identification of the UDP-GlcNAc: PI α1-6 GlcNAc-transferase subunits of the glycosylphosphatidylinositol biosynthetic pathway of Trypanosoma brucei., PLoS One, PMID 33735232
PXD022969 Dataset with its publication pending (from PRIDE)Dataset title: Mycobacterium tuberculosis H2S functions as a sink to modulate central metabolism, bioenergetics, and drug susceptibilityPossible reference: Kunota, TTR. et al. (2021) Mycobacterium tuberculosis H2S Functions as a Sink to Modulate Central Metabolism, Bioenergetics, and Drug Susceptibility., Antioxidants (Basel), PMID 34439535
PXD022935 no publication (from MassIVE)Dataset title: Protein mimetic amyloid inhibitor potently abrogates cancer-associated mutant p53 aggregation and restores tumor suppressor functionPossible reference: Palanikumar, L. et al. (2021) Protein mimetic amyloid inhibitor potently abrogates cancer-associated mutant p53 aggregation and restores tumor suppressor function., Nat Commun, PMID 34172723
PXD022934 no publication (from MassIVE)Dataset title: PTEN DEFICIENCY LEADS TO PROTEASOME ADDICTION, A NOVEL VULNERABILITY IN GLIOBLASTOMAPossible reference: Benitez, JA. et al. (2021) PTEN deficiency leads to proteasome addiction: a novel vulnerability in glioblastoma., Neuro Oncol, PMID 33428749
PXD022932 no publication (from MassIVE)Dataset title: Impaired phosphatidylethanolamine metabolism activates a reversible stress response that detects and resolves mutant mitochondrial precursorsPossible reference: Sam, PN. et al. (2021) Impaired phosphatidylethanolamine metabolism activates a reversible stress response that detects and resolves mutant mitochondrial precursors., iScience, PMID 33718843
PXD022916 Dataset with its publication pending (from PRIDE)Dataset title: Nuclear substrates of the CDKL5 kinase - PhosphoproteomicsPossible reference: Khanam, T. et al. (2021) CDKL5 kinase controls transcription-coupled responses to DNA damage., EMBO J, PMID 34605059
PXD022913 Dataset with its publication pending (from PRIDE)Dataset title: TALEN-based HvMPK3 knockout attenuates proteome and phenotype responses to flg22 in barleyPossible reference: TakáÄ, T. et al. (2021) TALEN-Based HvMPK3 Knock-Out Attenuates Proteome and Root Hair Phenotypic Responses to flg22 in Barley., Front Plant Sci, PMID 33995462
PXD022900 Dataset with its publication pending (from iProX)Dataset title: Phosphoproteome of honeybee brainPossible reference: Bezabih, G. et al. (2017) Phosphoproteome Analysis Reveals Phosphorylation Underpinnings in the Brains of Nurse and Forager Honeybees (Apis mellifera)., Sci Rep, PMID 28512345
PXD022889 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic signature of host response to SARS-CoV-2 infection in the nasopharynxPossible reference: Biji, A. et al. (2021) Identification of COVID-19 prognostic markers and therapeutic targets through meta-analysis and validation of Omics data from nasopharyngeal samples., EBioMedicine, PMID 34392148
PXD022872 Dataset with its publication pending (from PRIDE)Dataset title: GENETIC SUBTYPE- AND CELL TYPE-SPECIFIC PROTEIN SIGNATURES IN FRONTOTEMPORAL DEMENTIAPossible reference: Miedema, SSM. et al. (2022) Distinct cell type-specific protein signatures in GRN and MAPT genetic subtypes of frontotemporal dementia., Acta Neuropathol Commun, PMID 35799292
PXD022870 Dataset with its publication pending (from PRIDE)Dataset title: MALDI-IMS combined with shotgun proteomics identify and localize new factors in male infertilityPossible reference: Lahiri, S. et al. (2021) MALDI-IMS combined with shotgun proteomics identify and localize new factors in male infertility., Life Sci Alliance, PMID 33408244
PXD022858 Dataset with its publication pending (from PRIDE)Dataset title: Molecular reprogramming and phenotype switching in Staphylococcus aureus lead to high antibiotic persistence and affect therapy successPossible reference: Huemer, M. et al. (2021) Molecular reprogramming and phenotype switching in Staphylococcus aureus lead to high antibiotic persistence and affect therapy success., Proc Natl Acad Sci U S A, PMID 33574060
PXD022852 Dataset with its publication pending (from PRIDE)Dataset title: Hologenome analysis reveals dual symbiosis in the deep-sea hydrothermal vent snail Gigantopelta aegisPossible reference: Lan, Y. et al. (2021) Hologenome analysis reveals dual symbiosis in the deep-sea hydrothermal vent snail Gigantopelta aegis., Nat Commun, PMID 33608555
PXD022851 Dataset with its publication pending (from PRIDE)Dataset title: Extracellular vesicles derived from adult and fetal bone marrow mesenchymal stromal cells differentially promote expansion of hematopoietic stem and progenitor cellsPossible reference: Ghebes, CA. et al. (2021) Extracellular Vesicles Derived From Adult and Fetal Bone Marrow Mesenchymal Stromal Cells Differentially Promote ex vivo Expansion of Hematopoietic Stem and Progenitor Cells., Front Bioeng Biotechnol, PMID 33718342
PXD022842 Dataset with its publication pending (from PRIDE)Dataset title: Patagonin - CRISP: Antimicrobial activity and source of antimicrobial molecules in Duvernoy's gland secretion - Philodryas patagoniensis snakePossible reference: Badari, JC. et al. (2020) Patagonin-CRISP: Antimicrobial Activity and Source of Antimicrobial Molecules in Duvernoy's Gland Secretion (Philodryas patagoniensis Snake)., Front Pharmacol, PMID 33603660
PXD022828 no publication (from MassIVE)Dataset title: The neomycin resistance cassette in the targeted allele of Shank3B knock-out mice has potential off-target effects to produce an unusual Shank3 isoformPossible reference: Jin, C. et al. (2020) The Neomycin Resistance Cassette in the Targeted Allele of Shank3B Knock-Out Mice Has Potential Off-Target Effects to Produce an Unusual Shank3 Isoform., Front Mol Neurosci, PMID 33505245
PXD022821 Dataset with its publication pending (from PRIDE)Dataset title: The proteomic response of the coral symbiont Symbiodinium microadriaticum to thermal and nutrient stressPossible reference: Oakley, CA. et al. (2023) The Symbiodinium Proteome Response to Thermal and Nutrient Stresses., Plant Cell Physiol, PMID 36565060
PXD022811 Dataset with its publication pending (from PRIDE)Dataset title: SOX4 AND SMARCA4 COOPERATIVELY REGULATE PI3K SIGNALING THROUGH TRANSCRIPTIONAL ACTIVATION OF TGFBR2 IN BASAL LIKE BREAST CANCERPossible reference: Mehta, GA. et al. (2021) SOX4 and SMARCA4 cooperatively regulate PI3k signaling through transcriptional activation of TGFBR2., NPJ Breast Cancer, PMID 33837205
PXD022808 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic alterations in oral cancer patients delineated by tobacco using habitsPossible reference: Bhat, FA. et al. (2021) Proteomic Alterations Associated with Oral Cancer Patients with Tobacco Using Habits., OMICS, PMID 33794113
PXD022805 Dataset with its publication pending (from PRIDE)Dataset title: OXPHOS deficiency activates global adaptations to maintain mitochondrial membrane potentialPossible reference: Liu, S. et al. (2021) OXPHOS deficiency activates global adaptation pathways to maintain mitochondrial membrane potential., EMBO Rep, PMID 33655635
PXD022796 no publication (from MassIVE)Dataset title: Towards predicting the fate of reef coralsPossible reference: Wolanski, E. et al. (2014) Oceanographic and behavioural assumptions in models of the fate of coral and coral reef fish larvae., J R Soc Interface, PMID 24966233
PXD022791 Dataset with its publication pending (from PRIDE)Dataset title: FAIMS single cellUltrasensitive single-cell proteomics workflow identifies >1000 protein groups per mammalian cellPossible reference: Cong, Y. et al. (2020) Ultrasensitive single-cell proteomics workflow identifies >1000 protein groups per mammalian cell., Chem Sci, PMID 34163866
PXD022788 Dataset with its publication pending (from PRIDE)Dataset title: An environmental ecocorona influences the formation and evolution of the biological corona on the surface of single-walled carbon nanotubes - proteomePossible reference: Abdolahpur Monikh, F. et al. (2021) An environmental ecocorona influences the formation and evolution of the biological corona on the surface of single-walled carbon nanotubes., NanoImpact, PMID 35559972
PXD022758 Dataset with its publication pending (from PRIDE)Dataset title: A proteomic approach to understand the clinical significance of acute myeloid leukemia-derived extracellular vesicles reflecting essential characteristics of leukemiaPossible reference: Kang, KW. et al. (2021) A Proteomic Approach to Understand the Clinical Significance of Acute Myeloid Leukemia-Derived Extracellular Vesicles Reflecting Essential Characteristics of Leukemia., Mol Cell Proteomics, PMID 33592500
PXD022755 Dataset with its publication pending (from PRIDE)Dataset title: SCF-Fbxo42 promotes synaptonemal complex assembly by downregulating PP2A-B56Possible reference: Barbosa, P. et al. (2021) SCF-Fbxo42 promotes synaptonemal complex assembly by downregulating PP2A-B56., J Cell Biol, PMID 33382409
PXD022744 Dataset with its publication pending (from jPOST)Dataset title: Rapid enzyme-mediated biotinylation for cell surface proteome profilingPossible reference: Li, Y. et al. (2021) Rapid Enzyme-Mediated Biotinylation for Cell Surface Proteome Profiling., Anal Chem, PMID 33660993
PXD022743 no publication (from MassIVE)Dataset title: Salmonella effector SopD promotes plasma membrane scission by inhibiting Rab10Possible reference: Boddy, KC. et al. (2021) Salmonella effector SopD promotes plasma membrane scission by inhibiting Rab10., Nat Commun, PMID 34349110
PXD022734 Dataset with its publication pending (from PRIDE)Dataset title: Oxygen sensitive regulation of TFAM linking the von Hippel-Lindau cancer syndrome to impaired mitochondrial biogenesisPossible reference: Li, S. et al. (2022) Impaired oxygen-sensitive regulation of mitochondrial biogenesis within the von Hippel-Lindau syndrome., Nat Metab, PMID 35760869
PXD022726 Dataset with its publication pending (from PRIDE)Dataset title: Consequences of SF3B1 mutation on the proteomePossible reference: Oltean, S. et al. (2015) Modulators of alternative splicing as novel therapeutics in cancer., World J Clin Oncol, PMID 26468443
PXD022722 Dataset with its publication pending (from PRIDE)Dataset title: Proteomics of REPLICANT Perfusate Detects Changes in the Metastatic Lymph Node MicroenvironmentPossible reference: Stevenson, J. et al. (2021) Proteomics of REPLICANT perfusate detects changes in the metastatic lymph node microenvironment., NPJ Breast Cancer, PMID 33674617
PXD022713 Dataset with its publication pending (from PRIDE)Dataset title: An Alveolata secretory machinery adapted to parasite-host cell invasionPossible reference: Aquilini, E. et al. (2021) An Alveolata secretory machinery adapted to parasite host cell invasion., Nat Microbiol, PMID 33495622
PXD022711 Dataset with its publication pending (from PRIDE)Dataset title: Proteome-wide analysis of heat-stress in Pinus radiata somatic embryos reveals a combined response of sugar metabolism and translational regulation mechanismsPossible reference: Castander-Olarieta, A. et al. (2021) Proteome-Wide Analysis of Heat-Stress in Pinus radiata Somatic Embryos Reveals a Combined Response of Sugar Metabolism and Translational Regulation Mechanisms., Front Plant Sci, PMID 33912202
PXD022703 Dataset with its publication pending (from PRIDE)Dataset title: The deubiquitinase TRABID stabilises the K29/K48-specific E3 ubiquitin ligase HECTD1Possible reference: Harris, LD. et al. (2021) The deubiquitinase TRABID stabilizes the K29/K48-specific E3 ubiquitin ligase HECTD1., J Biol Chem, PMID 33853758
PXD022701 Dataset with its publication pending (from PRIDE)Dataset title: The ubiquitin ligase Ariadne-1 regulates NSF for neurotransmitter releasePossible reference: Ramírez, J. et al. (2021) The ubiquitin ligase Ariadne-1 regulates neurotransmitter release via ubiquitination of NSF., J Biol Chem, PMID 33581113
PXD022689 Dataset with its publication pending (from PRIDE)Dataset title: Calpain-mediated Protein Targets in Cardiac Mitochondria following Ischemia-ReperfusionPossible reference: Li, L. et al. (2022) Calpain-mediated protein targets in cardiac mitochondria following ischemia-reperfusion., Sci Rep, PMID 34997008
PXD022684 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic analysis of FPA interactorsPossible reference: Zheng, YS. et al. (2017) Identification of interacting proteins of the TaFVE protein involved in spike development in bread wheat., Proteomics, PMID 28225203
PXD022682 Dataset with its publication pending (from PRIDE)Dataset title: Lipocalin 13 enhances insulin secretion but is dispensable for systemic metabolic controlPossible reference: Bühler, L. et al. (2021) Lipocalin 13 enhances insulin secretion but is dispensable for systemic metabolic control., Life Sci Alliance, PMID 33536239
PXD022677 Dataset with its publication pending (from PRIDE)Dataset title: Another layer of complexity in Staphylococcus aureus methionine biosynthesis control: Unusual RNase III-driven T-box riboswitch cleavage determines met operon mRNA stability and decayPossible reference: Wencker, FDR. et al. (2021) Another layer of complexity in Staphylococcus aureus methionine biosynthesis control: unusual RNase III-driven T-box riboswitch cleavage determines met operon mRNA stability and decay., Nucleic Acids Res, PMID 33450025
PXD022676 Dataset with its publication pending (from PRIDE)Dataset title: The TUTase URT1 connects decapping activators and prevents the accumulation of excessively deadenylated mRNAs to avoid siRNA biogenesisPossible reference: Scheer, H. et al. (2021) The TUTase URT1 connects decapping activators and prevents the accumulation of excessively deadenylated mRNAs to avoid siRNA biogenesis., Nat Commun, PMID 33637717
PXD022673 Dataset with its publication pending (from PRIDE)Dataset title: Chemotherapy-polarized macrophages from human breast cancerPossible reference: Liu, J. et al. (2021) The IRENA lncRNA converts chemotherapy-polarized tumor-suppressing macrophages to tumor-promoting phenotypes in breast cancer., Nat Cancer, PMID 35122000
PXD022645 Dataset with its publication pending (from PRIDE)Dataset title: RNA-mediated activity-based protein profiling reveals dihydrouridine modification on human mRNAPossible reference: Dai, W. et al. (2021) Activity-based RNA-modifying enzyme probing reveals DUS3L-mediated dihydrouridylation., Nat Chem Biol, PMID 34556860
PXD022625 Dataset with its publication pending (from PRIDE)Dataset title: The RNA helicase Dbp7 promotes domain V/VI compaction and stabilization of inter-domain interactions during early 60S assemblyPossible reference: Aquino, GRR. et al. (2021) The RNA helicase Dbp7 promotes domain V/VI compaction and stabilization of inter-domain interactions during early 60S assembly., Nat Commun, PMID 34686661
PXD022612 no publication (from MassIVE)Dataset title: A comprehensive urine proteome database generated from patients with various renal conditions and prostate cancerPossible reference: Swensen, AC. et al. (2021) A Comprehensive Urine Proteome Database Generated From Patients With Various Renal Conditions and Prostate Cancer., Front Med (Lausanne), PMID 33928097
PXD022599 Dataset with its publication pending (from PRIDE)Dataset title: The contact allergen NiSO4 triggers a distinct molecular response in primary human dendritic cells compared to bacterial LPSPossible reference: Höper, T. et al. (2021) The Contact Allergen NiSO4 Triggers a Distinct Molecular Response in Primary Human Dendritic Cells Compared to Bacterial LPS., Front Immunol, PMID 33777040
PXD022596 Dataset with its publication pending (from PRIDE)Dataset title: SOX4 AND SMARCA4 COOPERATIVELY REGULATE PI3K SIGNALING THROUGH TRANSCRIPTIONAL ACTIVATION OF TGFBR2 IN TRIPLE NEGATIVE BREAST CANCERPossible reference: Mehta, GA. et al. (2021) SOX4 and SMARCA4 cooperatively regulate PI3k signaling through transcriptional activation of TGFBR2., NPJ Breast Cancer, PMID 33837205
PXD022594 no publication (from MassIVE)Dataset title: Fully Integrated and Multiplexed Sample Preparation Technology for Sensitive Interactome ProfilingPossible reference: Mao, Y. et al. (2021) Fully Integrated and Multiplexed Sample Preparation Technology for Sensitive Interactome Profiling., Anal Chem, PMID 33522225
PXD022576 Dataset with its publication pending (from PRIDE)Dataset title: Comparative proteomics provides insights into diapause program of Bactrocera minax (Diptera: Tephritidae)Possible reference: Wang, J. et al. (2020) Comparative proteomics provides insights into diapause program of Bactrocera minax (Diptera: Tephritidae)., PLoS One, PMID 33382763
PXD022562 Dataset with its publication pending (from PRIDE)Dataset title: Interaction of Chinese cabbage (Brassica rapa ssp. pekinensis) cell wall proteins with mustard leaf beetle (Phaedon cochleariae) polygalacturonase family membersPossible reference: Haeger, W. et al. (2021) New Players in the Interaction Between Beetle Polygalacturonases and Plant Polygalacturonase-Inhibiting Proteins: Insights From Proteomics and Gene Expression Analyses., Front Plant Sci, PMID 34149758
PXD022560 Dataset with its publication pending (from PRIDE)Dataset title: Protein import defects induce mitophagy without membrane depolarizationPossible reference: De, R. et al. (2017) Acute mental stress induces mitochondrial bioenergetic crisis and hyper-fission along with aberrant mitophagy in the gut mucosa in rodent model of stress-related mucosal disease., Free Radic Biol Med, PMID 28993273
PXD022557 Dataset with its publication pending (from PRIDE)Dataset title: Sex Impacts Cardiac Function and the Proteome Response to Thyroid Hormone in Aged MicePossible reference: Zhu, WZ. et al. (2020) Sex impacts cardiac function and the proteome response to thyroid hormone in aged mice., Proteome Sci, PMID 33372611
PXD022549 Dataset with its publication pending (from PRIDE)Dataset title: Multiparametric characterization of red blood cells physiology after hypotonic dialysis based drug encapsulation process.Possible reference: Robert, M. et al. (2022) Multiparametric characterization of red blood cell physiology after hypotonic dialysis based drug encapsulation process., Acta Pharm Sin B, PMID 35847505
PXD022547 Dataset with its publication pending (from PRIDE)Dataset title: Reduced Nicotinamide Mononucleotide (NMNH) Potently Enhances NAD+, Suppresses Glycolysis and Cell GrowthPossible reference: Liu, Y. et al. (2021) Reduced Nicotinamide Mononucleotide (NMNH) Potently Enhances NAD+ and Suppresses Glycolysis, the TCA Cycle, and Cell Growth., J Proteome Res, PMID 33793246
PXD022543 Dataset with its publication pending (from PRIDE)Dataset title: lMoniliella spathulata an oil-degrading yeast, which promotes growth of barley in oil polluted soilPossible reference: Mikolasch, A. et al. (2021) Moniliella spathulata, an oil-degrading yeast, which promotes growth of barley in oil-polluted soil., Appl Microbiol Biotechnol, PMID 33219393
PXD022540 Dataset with its publication pending (from iProX)Dataset title: RLR-MAVS signaling related proteins.Possible reference: Zhang, LK. et al. (2016) Activation of the RLR/MAVS Signaling Pathway by the L Protein of Mopeia Virus., J Virol, PMID 27605671
PXD022516 Dataset with its publication pending (from PRIDE)Dataset title: Fasciola hepatica egg lysates - investigation of proteolytic activityPossible reference: Ilgová, J. et al. (2022) Transcriptomic and proteomic profiling of peptidase expression in Fasciola hepatica eggs developing at host's body temperature., Sci Rep, PMID 35725898
PXD022515 Dataset with its publication pending (from PRIDE)Dataset title: Hexameric VCP/p97 reprograms transcription by organizing enhancers with the ASPSCR1-TFE3 fusion oncoproteinPossible reference: Pozner, A. et al. (2023) ASPSCR1-TFE3 reprograms transcription by organizing enhancer loops around hexameric VCP/p97., bioRxiv, PMID 37873234
PXD022501 Dataset with its publication pending (from PRIDE)Dataset title: Human trophectoderm extracellular vesicle proteomePossible reference: Burns, G. et al. (2014) Extracellular vesicles in luminal fluid of the ovine uterus., PLoS One, PMID 24614226
PXD022494 no publication (from MassIVE)Dataset title: Cathepsin B MSP-MS at pH 4.6 and 7.2 without inhibitorPossible reference: Yoon, MC. et al. (2021) Selective Neutral pH Inhibitor of Cathepsin B Designed Based on Cleavage Preferences at Cytosolic and Lysosomal pH Conditions., ACS Chem Biol, PMID 34416110
PXD022493 no publication (from MassIVE)Dataset title: Cathepsin B MSP-MS at pH 4.6 and pH 7.2Possible reference: Yoon, MC. et al. (2021) Selective Neutral pH Inhibitor of Cathepsin B Designed Based on Cleavage Preferences at Cytosolic and Lysosomal pH Conditions., ACS Chem Biol, PMID 34416110
PXD022483 Dataset with its publication pending (from PRIDE)Dataset title: Global profiling of N-glycosylated proteins in the diatom Phaeodactylum tricornutumPossible reference: Xie, X. et al. (2021) Global Profiling of N-Glycoproteins and N-Glycans in the Diatom Phaeodactylum tricornutum., Front Plant Sci, PMID 34925422
PXD022478 Dataset with its publication pending (from PRIDE)Dataset title: Chronic pain susceptibility is associated with anhedonic behavior and alterations in the accumbal ubiquitin-proteasome systemPossible reference: Guimarães, MR. et al. (2021) Chronic pain susceptibility is associated with anhedonic behavior and alterations in the accumbal ubiquitin-proteasome system., Pain, PMID 33449505
PXD022475 Dataset with its publication pending (from PanoramaPublic)Dataset title: Validation of host proteins differentially expressed between COVID severe and non-severe plasma samplesPossible reference: Suvarna, K. et al. (2021) Proteomics and Machine Learning Approaches Reveal a Set of Prognostic Markers for COVID-19 Severity With Drug Repurposing Potential., Front Physiol, PMID 33995121
PXD022473 Dataset with its publication pending (from PRIDE)Dataset title: Exploring the molecular machinery of denitrification in Haloferax mediterranei through proteomicsPossible reference: Torregrosa-Crespo, J. et al. (2020) Exploring the Molecular Machinery of Denitrification in Haloferax mediterranei Through Proteomics., Front Microbiol, PMID 33363526
PXD022471 Dataset with its publication pending (from PRIDE)Dataset title: Molecular biomarkers of neovascular age-related macular degeneration with incomplete response to anti-vascular endothelial growth factor treatmentPossible reference: Mantel, I. et al. (2020) Molecular Biomarkers of Neovascular Age-Related Macular Degeneration With Incomplete Response to Anti-Vascular Endothelial Growth Factor Treatment., Front Pharmacol, PMID 33447243
PXD022467 Dataset with its publication pending (from PRIDE)Dataset title: Loss of full-length hnRNP R isoform impairs DNA damage response in motoneurons by inhibiting Yb1 recruitment to ChromatinPossible reference: Ghanawi, H. et al. (2021) Loss of full-length hnRNP R isoform impairs DNA damage response in motoneurons by inhibiting Yb1 recruitment to chromatin., Nucleic Acids Res, PMID 34850154
PXD022459 Dataset with its publication pending (from PRIDE)Dataset title: Proteome changes in pepper (Capsicum annuum L.) leaves induced by the green peach aphidPossible reference: Florencio-Ortiz, V. et al. (2021) Proteome changes in pepper (Capsicum annuum L.) leaves induced by the green peach aphid (Myzus persicae Sulzer)., BMC Plant Biol, PMID 33407137
PXD022435 Dataset with its publication pending (from PRIDE)Dataset title: Proteome and phosphoproteome of human bladder cancer tissuePossible reference: Lou, DY. et al. (2016) Neoadjuvant therapy for localized prostate cancer: Examining mechanism of action and efficacy within the tumor., Urol Oncol, PMID 24495446
PXD022432 Dataset with its publication pending (from PRIDE)Dataset title: Nucleolin rescues TDP-43 toxicity in yeast and human cell modelsPossible reference: Peggion, C. et al. (2021) Nucleolin Rescues TDP-43 Toxicity in Yeast and Human Cell Models., Front Cell Neurosci, PMID 33912014
PXD022426 Dataset with its publication pending (from PRIDE)Dataset title: A tailored phosphoaspartate probe unravels CprR as a response regulator in Pseudomonas aeruginosa interkingdom signalingPossible reference: Allihn, PWA. et al. (2021) A tailored phosphoaspartate probe unravels CprR as a response regulator in Pseudomonas aeruginosa interkingdom signaling., Chem Sci, PMID 34168754
PXD022425 Dataset with its publication pending (from PRIDE)Dataset title: Universal antimicrobial resistance detection from clinical bacterial isolates using proteomicsPossible reference: Luna, BM. et al. (2019) Adjunctive transferrin to reduce the emergence of antibiotic resistance in Gram-negative bacteria., J Antimicrob Chemother, PMID 31170282
PXD022419 Dataset with its publication pending (from PRIDE)Dataset title: Dissecting the molecular diversity and commonality of bovine and human treponemes identifies key survival and adhesion mechanismsPossible reference: Staton, GJ. et al. (2021) Dissecting the molecular diversity and commonality of bovine and human treponemes identifies key survival and adhesion mechanisms., PLoS Pathog, PMID 33780514
PXD022417 no publication (from MassIVE)Dataset title: Dysregulation of the complement and coagulation cascade in treated schizophrenia and bipolar disorder patientsPossible reference: Santa Cruz, EC. et al. (2021) A pilot study indicating the dysregulation of the complement and coagulation cascades in treated schizophrenia and bipolar disorder patients., Biochim Biophys Acta Proteins Proteom, PMID 33839315
PXD022414 no publication (from MassIVE)Dataset title: Cardiomyocyte Contractile Impairment in Heart Failure Results from Reduced BAG3-mediated Sarcomeric Protein TurnoverPossible reference: Martin, TG. et al. (2021) Cardiomyocyte contractile impairment in heart failure results from reduced BAG3-mediated sarcomeric protein turnover., Nat Commun, PMID 34011988
PXD022412 Dataset with its publication pending (from PRIDE)Dataset title: Gephyrin interacts with the K-Cl co-transporter KCC2 to regulate its surface expression and function in cortical neuronsPossible reference: Al Awabdh, S. et al. (2022) Gephyrin Interacts with the K-Cl Cotransporter KCC2 to Regulate Its Surface Expression and Function in Cortical Neurons., J Neurosci, PMID 34810232
PXD022410 Dataset with its publication pending (from PRIDE)Dataset title: Phosphorylation of Rif1 by Plk1Possible reference: Benada, J. et al. (2015) Polo-like kinase 1 inhibits DNA damage response during mitosis., Cell Cycle, PMID 25607646
PXD022409 Dataset with its publication pending (from PRIDE)Dataset title: Maternally inherited piRNAs silence transposons during Drosophila embryogenesisPossible reference: Gu, T. et al. (2013) Maternal depletion of Piwi, a component of the RNAi system, impacts heterochromatin formation in Drosophila., PLoS Genet, PMID 24068954
PXD022408 Dataset with its publication pending (from PRIDE)Dataset title: Cryo-EM structural analysis of FADD: Caspase-8 complexes defines the catalytic dimer architecture for co-ordinated control of cell fatePossible reference: Fox, JL. et al. (2021) Cryo-EM structural analysis of FADD:Caspase-8 complexes defines the catalytic dimer architecture for co-ordinated control of cell fate., Nat Commun, PMID 33547302
PXD022401 Dataset with its publication pending (from PRIDE)Dataset title: Nicotiana benthamiana AP-MS for TSWV NSsPossible reference: Zhai, Y. et al. (2021) Identification and Characterization of Plant-Interacting Targets of Tomato Spotted Wilt Virus Silencing Suppressor., Pathogens, PMID 33401462
PXD022400 Dataset with its publication pending (from PRIDE)Dataset title: Venom proteome of the limacodid caterpillar Doratifera vulneransPossible reference: Walker, AA. et al. (2021) Production, composition, and mode of action of the painful defensive venom produced by a limacodid caterpillar, Doratifera vulnerans., Proc Natl Acad Sci U S A, PMID 33893140
PXD022397 Dataset with its publication pending (from PRIDE)Dataset title: TbSAP is a novel chromatin protein repressing metacyclic Variant Surface Glycoprotein expression sites in bloodstream form Trypanosoma bruceiPossible reference: Davies, C. et al. (2021) TbSAP is a novel chromatin protein repressing metacyclic variant surface glycoprotein expression sites in bloodstream form Trypanosoma brucei., Nucleic Acids Res, PMID 33660774
PXD022389 Dataset with its publication pending (from jPOST)Dataset title: O-GlcNAcylation suppresses the ion current IClswell by preventing the binding of the protein ICln to α-integrinPossible reference: Costa, R. et al. (2020) O-GlcNAcylation Suppresses the Ion Current IClswell by Preventing the Binding of the Protein ICln to α-Integrin., Front Cell Dev Biol, PMID 33330510
PXD022372 Dataset with its publication pending (from PRIDE)Dataset title: A ciliopathy complex restrains centriolar length and builds distal appendages to initiate ciliogenesis.Possible reference: Kumar, D. et al. (2021) A ciliopathy complex builds distal appendages to initiate ciliogenesis., J Cell Biol, PMID 34241634
PXD022371 Dataset with its publication pending (from PRIDE)Dataset title: Neuroserpin Is Strongly Expressed in the Developing and Adult Mouse Neocortex but Its Absence Does Not Perturb Cortical Lamination and Synaptic ProteomePossible reference: Kement, D. et al. (2021) Neuroserpin Is Strongly Expressed in the Developing and Adult Mouse Neocortex but Its Absence Does Not Perturb Cortical Lamination and Synaptic Proteome., Front Neuroanat, PMID 33708076
PXD022343 Dataset with its publication pending (from PRIDE)Dataset title: A type 2C protein phosphatase activates high-affinity nitrate uptake by directly dephosphorylating NRT2.1 in ArabidopsisPossible reference: Ohkubo, Y. et al. (2021) A type 2C protein phosphatase activates high-affinity nitrate uptake by dephosphorylating NRT2.1., Nat Plants, PMID 33686225
PXD022330 Dataset with its publication pending (from PRIDE)Dataset title: Two-dimensional low-flow liquid-chromatography setup for shotgun proteomicsPossible reference: Roca, LS. et al. (2021) Development of comprehensive two-dimensional low-flow liquid-chromatography setup coupled to high-resolution mass spectrometry for shotgun proteomics., Anal Chim Acta, PMID 33781465
PXD022323 Dataset with its publication pending (from PRIDE)Dataset title: Deletion of Allele-Specific HLAs (DASH)Possible reference: Pyke, RM. et al. (2022) A machine learning algorithm with subclonal sensitivity reveals widespread pan-cancer human leukocyte antigen loss of heterozygosity., Nat Commun, PMID 35414054
PXD022321 Dataset with its publication pending (from PRIDE)Dataset title: Disturbed intramitochondrial phosphatidic acid transport impairs cellular stress signalingPossible reference: Eiyama, A. et al. (2021) Disturbed intramitochondrial phosphatidic acid transport impairs cellular stress signaling., J Biol Chem, PMID 33497623
PXD022307 Dataset with its publication pending (from jPOST)Dataset title: Arabidopsis membrane protein phosphoproteomics in early cold responsePossible reference: Kamal, MM. et al. (2020) Large-Scale Phosphoproteomic Study of Arabidopsis Membrane Proteins Reveals Early Signaling Events in Response to Cold., Int J Mol Sci, PMID 33207747
PXD022296 Dataset with its publication pending (from PRIDE)Dataset title: Mass-spectrometry based plasma proteomics identifies biomarkers for the detection of COVID-19 progressionPossible reference: Suvarna, K. et al. (2021) Proteomics and Machine Learning Approaches Reveal a Set of Prognostic Markers for COVID-19 Severity With Drug Repurposing Potential., Front Physiol, PMID 33995121
PXD022291 no publication (from MassIVE)Dataset title: Decoding functional high-density lipoprotein particle surfaceome interactionsPossible reference: Frey, K. et al. (2022) Decoding Functional High-Density Lipoprotein Particle Surfaceome Interactions., Int J Mol Sci, PMID 36012766
PXD022290 Dataset with its publication pending (from PRIDE)Dataset title: Epithelial to mesenchymal transition shed microvesicle proteomePossible reference: Carrasco-Ramírez, P. et al. (2016) Podoplanin is a component of extracellular vesicles that reprograms cell-derived exosomal proteins and modulates lymphatic vessel formation., Oncotarget, PMID 26893367
PXD022275 Dataset with its publication pending (from jPOST)Dataset title: Arabidopsis early cold response phosphoproteomicsPossible reference: Kamal, MM. et al. (2020) Large-Scale Phosphoproteomic Study of Arabidopsis Membrane Proteins Reveals Early Signaling Events in Response to Cold., Int J Mol Sci, PMID 33207747
PXD022257 Dataset with its publication pending (from PRIDE)Dataset title: Integrative analysis of proteomics and DNA methylation in orbital fibroblasts from Graves​Possible reference: Virakul, S. et al. (2020) Integrative Analysis of Proteomics and DNA Methylation in Orbital Fibroblasts From Graves' Ophthalmopathy., Front Endocrinol (Lausanne), PMID 33658982
PXD022250 Dataset with its publication pending (from PRIDE)Dataset title: Adaptive Laboratory Evolution of microbial co-cultures for improved metabolite secretionPossible reference: Konstantinidis, D. et al. (2021) Adaptive laboratory evolution of microbial co-cultures for improved metabolite secretion., Mol Syst Biol, PMID 34370382
PXD022245 Dataset with its publication pending (from PRIDE)Dataset title: PTENε, a new isoform of PTEN, suppresses tumor metastasis through filopodia formation regulation.Possible reference: Zhang, Q. et al. (2021) PTENε suppresses tumor metastasis through regulation of filopodia formation., EMBO J, PMID 33755220
PXD022239 Dataset with its publication pending (from PRIDE)Dataset title: Bacterial RF3 Senses Chaperone Function in Co-translational FoldingPossible reference: Zhao, L. et al. (2021) Bacterial RF3 senses chaperone function in co-translational folding., Mol Cell, PMID 34107307
PXD022225 Dataset with its publication pending (from PRIDE)Dataset title: Combining mass spectrometry and machine learning to discover bioactive peptidesPossible reference: Madsen, CT. et al. (2022) Combining mass spectrometry and machine learning to discover bioactive peptides., Nat Commun, PMID 36266275
PXD022215 Dataset with its publication pending (from PRIDE)Dataset title: Sequences in the cytoplasmic tail of SARS-CoV-2 Spike facilitate expression at the cell surface and syncytia formationPossible reference: Cattin-Ortolá, J. et al. (2021) Sequences in the cytoplasmic tail of SARS-CoV-2 Spike facilitate expression at the cell surface and syncytia formation., Nat Commun, PMID 34504087
PXD022202 Dataset with its publication pending (from PRIDE)Dataset title: Mannose and mannobiose specific responses of insect associated cellulolytic Streptomyces.Possible reference: Ohashi, K. et al. (2021) Mannose- and Mannobiose-Specific Responses of the Insect-Associated Cellulolytic Bacterium Streptomyces sp. Strain SirexAA-E., Appl Environ Microbiol, PMID 33990299
PXD022190 Dataset with its publication pending (from PRIDE)Dataset title: Integrity of the short arm of nuclear pore Y-complex is required for mouse embryonic stem cell growth and differentiationPossible reference: Gonzalez-Estevez, A. et al. (2021) Integrity of the short arm of the nuclear pore Y-complex is required for mouse embryonic stem cell growth and differentiation., J Cell Sci, PMID 34037234
PXD022189 Dataset with its publication pending (from PRIDE)Dataset title: Label-Free LC-MS/MS Proteomic Analysis of Urinary Identification in Diabetic Vascular DementiaPossible reference: Chen, R. et al. (2021) Label-Free Liquid Chromatography-Mass Spectrometry Proteomic Analysis of Urinary Identification in Diabetic Vascular Dementia in a Han Chinese Population., Front Aging Neurosci, PMID 33597859
PXD022186 Dataset with its publication pending (from PRIDE)Dataset title: Detection and Quantification of Novel C-terminal TDP-43 Fragments in ALS-TDPPossible reference: Feneberg, E. et al. (2021) Detection and quantification of novel C-terminal TDP-43 fragments in ALS-TDP., Brain Pathol, PMID 33300249
PXD022181 Dataset with its publication pending (from PRIDE)Dataset title: Exosomal markers in secretome of Kamepferitrin-treated HepG2 cellsPossible reference: KaraosmanoÄŸlu, O. et al. (2018) Identification of biomarkers associated with partial epithelial to mesenchymal transition in the secretome of slug over-expressing hepatocellular carcinoma cells., Cell Oncol (Dordr), PMID 29858962
PXD022165 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic insights into senescence of testicular peritubular cells from a nonhuman primate modelPossible reference: Stöckl, JB. et al. (2020) Proteomic Insights into Senescence of Testicular Peritubular Cells from a Nonhuman Primate Model., Cells, PMID 33213088
PXD022149 Dataset with its publication pending (from PRIDE)Dataset title: Ceragenins and antimicrobial peptides kill bacteria through distinct mechanismsPossible reference: Mitchell, G. et al. (2022) Ceragenins and Antimicrobial Peptides Kill Bacteria through Distinct Mechanisms., mBio, PMID 35073755
PXD022112 Dataset with its publication pending (from PRIDE)Dataset title: Harnessing machine learning to unravel protein degradation in Escherichia coliPossible reference: Nagar, N. et al. (2021) Harnessing Machine Learning To Unravel Protein Degradation in Escherichia coli., mSystems, PMID 33531410
PXD022105 Dataset with its publication pending (from PRIDE)Dataset title: Dimerisation of the PICTS complex via LC8/Cut-up drives co-transcriptional transposon silencing in DrosophilaPossible reference: Eastwood, EL. et al. (2021) Dimerisation of the PICTS complex via LC8/Cut-up drives co-transcriptional transposon silencing in Drosophila., Elife, PMID 33538693
PXD022103 Dataset with its publication pending (from PRIDE)Dataset title: Dimerisation of the PICTS complex via LC8/Cut-up drives co-transcriptional transposon silencing in DrosophilaPossible reference: Eastwood, EL. et al. (2021) Dimerisation of the PICTS complex via LC8/Cut-up drives co-transcriptional transposon silencing in Drosophila., Elife, PMID 33538693
PXD022085 Dataset with its publication pending (from iProX)Dataset title: Proteomic analysis of bronchoalveolar lavage fluid in COVID-19 patientsPossible reference: Zeng, HL. et al. (2021) Proteomic characteristics of bronchoalveolar lavage fluid in critical COVID-19 patients., FEBS J, PMID 33098359
PXD022071 Dataset with its publication pending (from jPOST)Dataset title: Damage-associated molecular patterns in S100 proteins are recognized by Signal Inhibitory Receptor on Leukocytes-1Possible reference: Rumpret, M. et al. (2021) Recognition of S100 proteins by Signal Inhibitory Receptor on Leukocytes-1 negatively regulates human neutrophils., Eur J Immunol, PMID 34145909
PXD022068 Dataset with its publication pending (from PRIDE)Dataset title: Endothelial cells exposed to atheroprotective flow secrete follistatin-like protein 1 which reduces transcytosis and inflammationPossible reference: Ghim, M. et al. (2021) Endothelial cells exposed to atheroprotective flow secrete follistatin-like 1 protein which reduces transcytosis and inflammation., Atherosclerosis, PMID 34425528
PXD022067 Dataset with its publication pending (from PRIDE)Dataset title: The methyltransferase METTL9 mediates pervasive 1-methylhistidine modification in mammalian proteomesPossible reference: Davydova, E. et al. (2021) The methyltransferase METTL9 mediates pervasive 1-methylhistidine modification in mammalian proteomes., Nat Commun, PMID 33563959
PXD022061 Dataset with its publication pending (from PRIDE)Dataset title: Structure of autoinhibited Akt1 reveals mechanism of PIP 3 -mediated activationPossible reference: Truebestein, L. et al. (2021) Structure of autoinhibited Akt1 reveals mechanism of PIP3-mediated activation., Proc Natl Acad Sci U S A, PMID 34385319
PXD022039 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic analysis of Histoplasma capsulatum under zinc deprivationPossible reference: Assunção, LDP. et al. (2020) Insights Into Histoplasma capsulatum Behavior on Zinc Deprivation., Front Cell Infect Microbiol, PMID 33330123
PXD022029 Dataset with its publication pending (from PRIDE)Dataset title: Rhizobium leguminosarum glutathione peroxidase is essential for oxidative stress resistance and efficient nodulationPossible reference: Hu, A. et al. (2021) Rhizobium leguminosarum Glutathione Peroxidase Is Essential for Oxidative Stress Resistance and Efficient Nodulation., Front Microbiol, PMID 33633710
PXD022028 Dataset with its publication pending (from PRIDE)Dataset title: Host cholesterol modulates the generation and enrichment of persister population during Mycobacterium tuberculosis infection.Possible reference: Talwar, S. et al. (2020) Role of VapBC12 Toxin-Antitoxin Locus in Cholesterol-Induced Mycobacterial Persistence., mSystems, PMID 33323416
PXD022023 Dataset with its publication pending (from PRIDE)Dataset title: FAX-RIC enables robust RNA interactome profiling in multicellular organisms in vivoPossible reference: Na, Y. et al. (2021) FAX-RIC enables robust profiling of dynamic RNP complex formation in multicellular organisms in vivo., Nucleic Acids Res, PMID 33332543
PXD022019 Dataset with its publication pending (from PRIDE)Dataset title: The influence of delay in mononuclear cell isolation on acute myeloid leukemia phosphorylation profilesPossible reference: van Alphen, C. et al. (2021) The influence of delay in mononuclear cell isolation on acute myeloid leukemia phosphorylation profiles., J Proteomics, PMID 33561558
PXD022015 Dataset with its publication pending (from PRIDE)Dataset title: Characterization of gastric tumor organoids with specific oncogenic pathway activationsPossible reference: Seidlitz, T. et al. (2019) Human gastric cancer modelling using organoids., Gut, PMID 29703791
PXD022013 no publication (from MassIVE)Dataset title: Evidence for structural protein damage and membrane lipid remodeling in red blood cells from COVID-19 patientsPossible reference: Thomas, T. et al. (2020) Evidence for structural protein damage and membrane lipid remodeling in red blood cells from COVID-19 patients., medRxiv, PMID 32637980
PXD022007 Dataset with its publication pending (from PRIDE)Dataset title: PLCP activity profiling in the ryegrass apoplastPossible reference: Passarge, A. et al. (2021) Host apoplastic cysteine protease activity is suppressed during the mutualistic association of Lolium perenne and Epichloë festucae., J Exp Bot, PMID 33630999
PXD021992 Dataset with its publication pending (from PRIDE)Dataset title: Large-scale identification of ubiquitination sites on membrane-associated proteins in Arabidopsis thaliana seedlingsPossible reference: Grubb, LE. et al. (2021) Large-scale identification of ubiquitination sites on membrane-associated proteins in Arabidopsis thaliana seedlings., Plant Physiol, PMID 33585938
PXD021981 no publication (from MassIVE)Dataset title: Synechococcus Sp. RS9916 Lyase Isomerase MpeV CharacterizationPossible reference: Carrigee, LA. et al. (2021) MpeV is a lyase isomerase that ligates a doubly linked phycourobilin on the β-subunit of phycoerythrin I and II in marine Synechococcus., J Biol Chem, PMID 33154169
PXD021966 Dataset with its publication pending (from PRIDE)Dataset title: Composition and origin of lung fluid proteome in premature infants and relationship to respiratory outcomePossible reference: Ballard, PL. et al. (2020) Composition and origin of lung fluid proteome in premature infants and relationship to respiratory outcome., PLoS One, PMID 33301538
PXD021961 Dataset with its publication pending (from PRIDE)Dataset title: Rapid degradation pathways of host proteins during HCMV infection revealed by quantitative proteomicsPossible reference: Lin, KM. et al. (2020) Rapid Degradation Pathways of Host Proteins During HCMV Infection Revealed by Quantitative Proteomics., Front Cell Infect Microbiol, PMID 33585265
PXD021959 Dataset with its publication pending (from PRIDE)Dataset title: Quantitative proteomic analysis to capture the role of heat-accumulated proteins in moss plant acquired thermotolerancePossible reference: Guihur, A. et al. (2021) Quantitative proteomic analysis to capture the role of heat-accumulated proteins in moss plant acquired thermotolerance., Plant Cell Environ, PMID 33314263
PXD021949 Dataset with its publication pending (from PRIDE)Dataset title: Palaeoproteomics confirm earliest domesticated sheep in southern Africa ca. 2000 BPPossible reference: Coutu, AN. et al. (2021) Palaeoproteomics confirm earliest domesticated sheep in southern Africa ca. 2000 BP., Sci Rep, PMID 33758223
PXD021947 Dataset with its publication pending (from PRIDE)Dataset title: Mechanism and function of DNA replication-independent DNA-protein crosslink repair via the SUMO pathwayPossible reference: Liu, JCY. et al. (2021) Mechanism and function of DNA replication-independent DNA-protein crosslink repair via the SUMO-RNF4 pathway., EMBO J, PMID 34346517
PXD021945 Dataset with its publication pending (from PRIDE)Dataset title: Spastin recovery in hereditary spastic paraplegia by preventing neddylation-dependent degradationPossible reference: Sardina, F. et al. (2020) Spastin recovery in hereditary spastic paraplegia by preventing neddylation-dependent degradation., Life Sci Alliance, PMID 33106322
PXD021937 Dataset with its publication pending (from PRIDE)Dataset title: Rat retinae data for use as spectral library, for pathway remodelling as well as protein mappingPossible reference: Reinehr, S. et al. (2021) Rat retinae data for use as spectral library, for pathway remodeling as well as protein mapping., Data Brief, PMID 34222568
PXD021935 Dataset with its publication pending (from PRIDE)Dataset title: Comprehensive Proteomic Profiling of Urinary Exosomes and Identification of Potential Noninvasive Early Biomarkers of Alzheimer’s Disease in 5XFAD Mouse ModelPossible reference: Song, Z. et al. (2020) Comprehensive Proteomic Profiling of Urinary Exosomes and Identification of Potential Non-invasive Early Biomarkers of Alzheimer's Disease in 5XFAD Mouse Model., Front Genet, PMID 33250918
PXD021905 no publication (from MassIVE)Dataset title: Respiratory vinyl chloride reductive dechlorination to ethene in TceA-expressing Dehalococcoides mccartyiPossible reference: Yan, J. et al. (2021) Respiratory Vinyl Chloride Reductive Dechlorination to Ethene in TceA-Expressing Dehalococcoides mccartyi., Environ Sci Technol, PMID 33683880
PXD021901 Dataset with its publication pending (from PRIDE)Dataset title: An NSD3-targeting PROTAC suppresses the NSD3 and cMyc oncogenic nodes in cancer cellsPossible reference: Xu, C. et al. (2022) A NSD3-targeted PROTAC suppresses NSD3 and cMyc oncogenic nodes in cancer cells., Cell Chem Biol, PMID 34469831
PXD021897 Dataset with its publication pending (from PRIDE)Dataset title: Drosophila Sex Peptide Controls the Assembly of Lipid Microcarriers in Seminal FluidPossible reference: Wainwright, SM. et al. (2021) Drosophila Sex Peptide controls the assembly of lipid microcarriers in seminal fluid., Proc Natl Acad Sci U S A, PMID 33495334
PXD021895 Dataset with its publication pending (from PRIDE)Dataset title: Hijacking of transcriptional condensates by endogenous retrovirusesPossible reference: Asimi, V. et al. (2022) Hijacking of transcriptional condensates by endogenous retroviruses., Nat Genet, PMID 35864192
PXD021888 Dataset with its publication pending (from PRIDE)Dataset title: The lytic polysaccharide monooxygenase of Pseudomonas aeruginosa promotes bacterial survival during systemic infectionPossible reference: Askarian, F. et al. (2021) The lytic polysaccharide monooxygenase CbpD promotes Pseudomonas aeruginosa virulence in systemic infection., Nat Commun, PMID 33623002
PXD021882 Dataset with its publication pending (from PRIDE)Dataset title: Fully automated sample processing and analysis workflow for low-input proteome profilingPossible reference: Liang, Y. et al. (2021) Fully Automated Sample Processing and Analysis Workflow for Low-Input Proteome Profiling., Anal Chem, PMID 33352054
PXD021880 Dataset with its publication pending (from PRIDE)Dataset title: TDP-43 aggregation induced by oxidative stress causes global mitochondrial imbalance in ALSPossible reference: Zuo, X. et al. (2021) TDP-43 aggregation induced by oxidative stress causes global mitochondrial imbalance in ALS., Nat Struct Mol Biol, PMID 33398173
PXD021861 Dataset with its publication pending (from PRIDE)Dataset title: The velvet protein Vel1 controls initial plant root colonization and conidia formation for xylem distribution in Verticillium wiltPossible reference: Höfer, AM. et al. (2021) The velvet protein Vel1 controls initial plant root colonization and conidia formation for xylem distribution in Verticillium wilt., PLoS Genet, PMID 33720931
PXD021858 Dataset with its publication pending (from PRIDE)Dataset title: ApoC-III is a novel inducer of human valvular calcificationPossible reference: Schlotter, F. et al. (2021) ApoC-III is a novel inducer of calcification in human aortic valves., J Biol Chem, PMID 33334888
PXD021856 Dataset with its publication pending (from PRIDE)Dataset title: Human plasma small extracellular vesicle proteome (disease, non-disease)Possible reference: Reale, A. et al. (2021) Human myeloma cell- and plasma-derived extracellular vesicles contribute to functional regulation of stromal cells., Proteomics, PMID 33580572
PXD021849 Dataset with its publication pending (from jPOST)Dataset title: Muscle Proteome of Critical Limb Ischemia PatientsPossible reference: Bateman, RM. et al. (2016) 36th International Symposium on Intensive Care and Emergency Medicine : Brussels, Belgium. 15-18 March 2016., Crit Care, PMID 27885969
PXD021848 Dataset with its publication pending (from PRIDE)Dataset title: Proteomics of anatomical sections of the gut of Nosema-infected Western honey bee (Apis mellifera) reveals different early responses to Nosema spp. isolatesPossible reference: Houdelet, C. et al. (2021) Proteomics of Anatomical Sections of the Gut of Nosema-Infected Western Honeybee (Apis mellifera) Reveals Different Early Responses to Nosema spp. Isolates., J Proteome Res, PMID 33305956
PXD021846 no publication (from MassIVE)Dataset title: Proteomic profile of bone collagen extracted for stable isotopes: implications for bulk and single amino acid analysesPossible reference: Cleland, TP. et al. (2021) Proteomic profile of bone "collagen" extracted for stable isotopes: Implications for bulk and single amino acid analyses., Rapid Commun Mass Spectrom, PMID 33332665
PXD021843 Dataset with its publication pending (from PRIDE)Dataset title: The malaria parasite sheddase SUB2 governs host red blood cell membrane sealing at invasionPossible reference: Collins, CR. et al. (2020) The malaria parasite sheddase SUB2 governs host red blood cell membrane sealing at invasion., Elife, PMID 33287958
PXD021841 Dataset with its publication pending (from PRIDE)Dataset title: A redirected protein secretion stress response in the genome-engineered midiBacillus-IIPossible reference: Aguilar Suárez, R. et al. (2021) Redirected Stress Responses in a Genome-Minimized 'midiBacillus' Strain with Enhanced Capacity for Protein Secretion., mSystems, PMID 34904864
PXD021832 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic approache of the response to iron-limited condition in Staphylococcus lugdunensisPossible reference: Aubourg, M. et al. (2020) Phenotypic and proteomic approaches of the response to iron-limited condition in Staphylococcus lugdunensis., BMC Microbiol, PMID 33115407
PXD021831 Dataset with its publication pending (from PRIDE)Dataset title: A comprehensive landscape of 60S ribosome biogenesis factorsPossible reference: Sailer, C. et al. (2022) A comprehensive landscape of 60S ribosome biogenesis factors., Cell Rep, PMID 35139378
PXD021830 Dataset with its publication pending (from PRIDE)Dataset title: Proteomics of Btk haemolymph stimulonPossible reference: Sun, Y. et al. (2021) Tandem Mass Tag-Based Quantitative Proteomics and Virulence Phenotype of Hemolymph-Treated Bacillus thuringiensis kurstaki Cells Reveal New Insights on Bacterial Pathogenesis in Insects., Microbiol Spectr, PMID 34704785
PXD021826 Dataset with its publication pending (from PRIDE)Dataset title: Mitochondria-rough-ER Contacts in The Liver Regulate Systemic Lipid HomeostasisPossible reference: Anastasia, I. et al. (2021) Mitochondria-rough-ER contacts in the liver regulate systemic lipid homeostasis., Cell Rep, PMID 33730569
PXD021802 no publication (from MassIVE)Dataset title: Characterization and Complete Genome Sequence of Privateer, a Highly Prolate Proteus mirabilis PodophagePossible reference: Corban, JE. et al. (2021) Characterization and complete genome sequence of Privateer, a highly prolate Proteus mirabilis podophage., PeerJ, PMID 33614267
PXD021798 Dataset with its publication pending (from PRIDE)Dataset title: Function and Regulation of the pyruvate transporter CstA in Escherichia coliPossible reference: Kristoficova, I. et al. (2018) BtsT, a Novel and Specific Pyruvate/H+ Symporter in Escherichia coli., J Bacteriol, PMID 29061664
PXD021793 Dataset with its publication pending (from PRIDE)Dataset title: Unbiased label-free quantitative proteomics of Amyotrophic lateral sclerosis (ALS) mutations in CCNF reveals activation of the apoptosis pathwayPossible reference: Cheng, F. et al. (2021) Unbiased Label-Free Quantitative Proteomics of Cells Expressing Amyotrophic Lateral Sclerosis (ALS) Mutations in CCNF Reveals Activation of the Apoptosis Pathway: A Workflow to Screen Pathogenic Gene Mutations., Front Mol Neurosci, PMID 33986643
PXD021769 Dataset with its publication pending (from PRIDE)Dataset title: Extracellular Vesicles released by Leishmania donovani infected mouse macrophagesPossible reference: Alves-Ferreira, EVC. et al. (2020) Leishmania braziliensis prostaglandin F2α synthase impacts host infection., Parasit Vectors, PMID 31915065
PXD021757 Dataset with its publication pending (from PRIDE)Dataset title: Epigenetic inactivation of the autophagy-lysosomal system in the Parkinson’s disease appendixPossible reference: Gordevicius, J. et al. (2021) Epigenetic inactivation of the autophagy-lysosomal system in appendix in Parkinson's disease., Nat Commun, PMID 34446734
PXD021738 Dataset with its publication pending (from PRIDE)Dataset title: Inhibition of CBP synergizes with the RNA-dependent mechanisms of azacitidine by limiting protein translationPossible reference: Diesch, J. et al. (2021) Inhibition of CBP synergizes with the RNA-dependent mechanisms of Azacitidine by limiting protein synthesis., Nat Commun, PMID 34663789
PXD021733 Dataset with its publication pending (from iProX)Dataset title: VWCE inhibited the proliferation, migration, invasion, and chemoresistance of the breast cancer cell linesPossible reference: Zhang, D. et al. (2020) VWCE Functions as a Tumor Suppressor in Breast Cancer Cells., Front Oncol, PMID 33194737
PXD021729 Dataset with its publication pending (from PRIDE)Dataset title: Tyrosine phosphoproteomics of patient-derived xenografts reveals ephrin type-B receptor 4 tyrosine kinase as novel therapeutic target in pancreatic cancerPossible reference: Renuse, S. et al. (2021) Tyrosine Phosphoproteomics of Patient-Derived Xenografts Reveals Ephrin Type-B Receptor 4 Tyrosine Kinase as a Therapeutic Target in Pancreatic Cancer., Cancers (Basel), PMID 34298619
PXD021728 Dataset with its publication pending (from PRIDE)Dataset title: Caspase-3 cleaves extracellular vesicle proteins during auditory brainstem developmentPossible reference: Weghorst, F. et al. (2020) Caspase-3 Cleaves Extracellular Vesicle Proteins During Auditory Brainstem Development., Front Cell Neurosci, PMID 33281555
PXD021716 Dataset with its publication pending (from PRIDE)Dataset title: Genetic and physiological mechanisms underlying flower induction in applePossible reference: Guitton, B. et al. (2016) Analysis of transcripts differentially expressed between fruited and deflowered 'Gala' adult trees: a contribution to biennial bearing understanding in apple., BMC Plant Biol, PMID 26924309
PXD021685 Dataset with its publication pending (from PRIDE)Dataset title: SARS-CoV-2 Evades immune detection in Alveolar MacrophagesPossible reference: Dalskov, L. et al. (2020) SARS-CoV-2 evades immune detection in alveolar macrophages., EMBO Rep, PMID 33112036
PXD021682 Dataset with its publication pending (from PRIDE)Dataset title: N-glycomic signature of stage II colorectal cancer and its association with the tumor microenvironmentPossible reference: Boyaval, F. et al. (2021) N-Glycomic Signature of Stage II Colorectal Cancer and Its Association With the Tumor Microenvironment., Mol Cell Proteomics, PMID 33581319
PXD021673 Dataset with its publication pending (from PRIDE)Dataset title: LC-MS/MS analysis of lesional and normally looking psoriatic skinPossible reference: Sobolev, VV. et al. (2021) LC-MS/MS analysis of lesional and normally looking psoriatic skin reveals significant changes in protein metabolism and RNA processing., PLoS One, PMID 34038424
PXD021663 Dataset with its publication pending (from PRIDE)Dataset title: Phosphoproteomic analysis reveals Rio1 regulated protein metabolism in response to UV irradiation and multiple cellular processes in Sulfolobus islandicus REY15APossible reference: Huang, Q. et al. (2020) Phosphoproteomic Analysis Reveals Rio1-Related Protein Phosphorylation Changes in Response to UV Irradiation in Sulfolobus islandicus REY15A., Front Microbiol, PMID 33343525
PXD021658 Dataset with its publication pending (from PRIDE)Dataset title: Thiol-ene microfluidic chip for fast on-chip sample clean-up, separation and ESI mass analysis of peptides and proteinsPossible reference: Svejdal, RR. et al. (2020) Thiol-ene microfluidic chip for fast on-chip sample clean-up, separation and ESI mass spectrometry of peptides and proteins., Anal Chim Acta, PMID 33218478
PXD021657 Dataset with its publication pending (from PRIDE)Dataset title: A proteomic landscape of mouse tissues' macrophagesPossible reference: Wang, Y. et al. (2018) A proteomics landscape of circadian clock in mouse liver., Nat Commun, PMID 29674717
PXD021646 Dataset with its publication pending (from PRIDE)Dataset title: The STRIPAK signaling complex regulates dephosphorylation of GUL1, an RNA-binding protein that shuttles on endosomesPossible reference: Stein, V. et al. (2020) The STRIPAK signaling complex regulates dephosphorylation of GUL1, an RNA-binding protein that shuttles on endosomes., PLoS Genet, PMID 32997654
PXD021616 Dataset with its publication pending (from PRIDE)Dataset title: MLL4-associated condensates counterbalance Polycomb-mediated nuclear mechanical stress in Kabuki SyndromePossible reference: Fasciani, A. et al. (2020) MLL4-associated condensates counterbalance Polycomb-mediated nuclear mechanical stress in Kabuki syndrome., Nat Genet, PMID 33169020
PXD021602 Dataset with its publication pending (from PRIDE)Dataset title: Cell type-selective secretome profiling in vivoPossible reference: Wei, W. et al. (2021) Cell type-selective secretome profiling in vivo., Nat Chem Biol, PMID 33199915
PXD021601 Dataset with its publication pending (from PRIDE)Dataset title: Regulatory function of sympathetic innervation on the endo/lysosomal trafficking of acetylcholine receptorPossible reference: Straka, T. et al. (2021) Regulatory Function of Sympathetic Innervation on the Endo/Lysosomal Trafficking of Acetylcholine Receptor., Front Physiol, PMID 33776791
PXD021598 no publication (from MassIVE)Dataset title: Regulation of PP2A-subfamily holoenzyme function by carboxyl-terminal methylationPossible reference: Nasa, I. et al. (2020) Effects of carboxyl-terminal methylation on holoenzyme function of the PP2A subfamily., Biochem Soc Trans, PMID 33125487
PXD021588 Dataset with its publication pending (from PRIDE)Dataset title: Comparative Host-Coronavirus Protein Interaction Networks Reveal Pan-Viral Disease MechanismsPossible reference: Gordon, DE. et al. (2020) Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms., Science, PMID 33060197
PXD021584 Dataset with its publication pending (from PRIDE)Dataset title: Comparative analysis of systemic and tumor microenvironment proteomes of children with b-cell acute lymphocytic leukemia at diagnosis and after induction treatment.Possible reference: Broto, GE. et al. (2020) Comparative Analysis of Systemic and Tumor Microenvironment Proteomes From Children With B-Cell Acute Lymphocytic Leukemia at Diagnosis and After Induction Treatment., Front Oncol, PMID 33381445
PXD021581 Dataset with its publication pending (from PRIDE)Dataset title: Prognostic accuracy of Mass Spectrometric Analysis of Plasma in COVID-19Possible reference: Lazari, LC. et al. (2021) Prognostic accuracy of MALDI-TOF mass spectrometric analysis of plasma in COVID-19., Life Sci Alliance, PMID 34168074
PXD021569 no publication (from MassIVE)Dataset title: Sex-specific effects of in vitro fertilization on adult metabolic phenotypes and hepatic transcriptomic and proteomic pathways in mousePossible reference: Narapareddy, L. et al. (2021) Sex-specific effects of in vitro fertilization on adult metabolic outcomes and hepatic transcriptome and proteome in mouse., FASEB J, PMID 33734487
PXD021564 Dataset with its publication pending (from PRIDE)Dataset title: Protein and Signaling Pathway Responses to rhIL-6 Intervention before Lobaplatin Treatment in Osteosarcoma Cells using LC-MS/MSPossible reference: Wang, H. et al. (2021) Protein and Signaling Pathway Responses to rhIL-6 Intervention Before Lobaplatin Treatment in Osteosarcoma Cells., Front Oncol, PMID 33791202
PXD021543 Dataset with its publication pending (from PRIDE)Dataset title: Flavonol-mediated stabilization of efflux complexes regulates polar auxin transportPossible reference: Teale, WD. et al. (2021) Flavonol-mediated stabilization of PIN efflux complexes regulates polar auxin transport., EMBO J, PMID 33185277
PXD021539 Dataset with its publication pending (from PRIDE)Dataset title: Identification of drivers of breast cancer invasion by secretome analysis: insight into CTGF signalingPossible reference: Hellinger, JW. et al. (2020) Identification of drivers of breast cancer invasion by secretome analysis: insight into CTGF signaling., Sci Rep, PMID 33087801
PXD021538 Dataset with its publication pending (from PRIDE)Dataset title: Top-down proteomics of human saliva in Alzheimer diseasePossible reference: Cabras, T. et al. (2013) Significant modifications of the salivary proteome potentially associated with complications of Down syndrome revealed by top-down proteomics., Mol Cell Proteomics, PMID 23533003
PXD021527 Dataset with its publication pending (from PRIDE)Dataset title: Methionyl-tRNA synthetase interactomePossible reference: Szalay, KZ. et al. (2013) Perturbation centrality and turbine: a novel centrality measure obtained using a versatile network dynamics tool., PLoS One, PMID 24205090
PXD021521 no publication (from MassIVE)Dataset title: In-depth analysis of proteomic and genomic fluctuations during the time course of human embryonic stem cells directed differentiation into beta cellsPossible reference: Budnik, B. et al. (2022) In-depth analysis of proteomic and genomic fluctuations during the time course of human embryonic stem cells directed differentiation into beta cells., Proteomics, PMID 35094488
PXD021520 no publication (from MassIVE)Dataset title: Differential Peptide Subtraction: mass spectrometry for human cancer virus discoveryPossible reference: Toptan, T. et al. (2020) Proteomic approach to discover human cancer viruses from formalin-fixed tissues., JCI Insight, PMID 33055416
PXD021497 Dataset with its publication pending (from PanoramaPublic)Dataset title: NeuroLINCS Proteomics: Defining human-derived iPSC proteomes and protein signatures of pluripotencyPossible reference: Matlock, AD. et al. (2023) NeuroLINCS Proteomics: Defining human-derived iPSC proteomes and protein signatures of pluripotency., Sci Data, PMID 36631473
PXD021457 Dataset with its publication pending (from PRIDE)Dataset title: Critical role of Aquaporin-1 and telocytes in infantile hemangioma response to propranolol beta-blockadePossible reference: Moisan, F. et al. (2021) Critical role of Aquaporin-1 and telocytes in infantile hemangioma response to propranolol beta blockade., Proc Natl Acad Sci U S A, PMID 33558238
PXD021447 Dataset with its publication pending (from PRIDE)Dataset title: Restoration of energy homeostasis by SIRT6 extends healthy lifespanPossible reference: Roichman, A. et al. (2021) Restoration of energy homeostasis by SIRT6 extends healthy lifespan., Nat Commun, PMID 34050173
PXD021437 Dataset with its publication pending (from PRIDE)Dataset title: Control of synaptic vesicle release probability via VAMP4 targeting to endolysosomesPossible reference: Ivanova, D. et al. (2021) Control of synaptic vesicle release probability via VAMP4 targeting to endolysosomes., Sci Adv, PMID 33931449
PXD021414 Dataset with its publication pending (from PRIDE)Dataset title: Proteomics of Extracellular Vesicles Produced by Granulicatella adiacens, which causes Infective EndocarditisPossible reference: Alkandari, SA. et al. (2020) Proteomics of extracellular vesicles produced by Granulicatella adiacens, which causes infective endocarditis., PLoS One, PMID 33216751
PXD021413 Dataset with its publication pending (from PRIDE)Dataset title: Inflammatory Signaling is Regulated by Fucosylation in Metastatic Breast Cancer CellsPossible reference: Doud, EH. et al. (2020) NF-κB Signaling Is Regulated by Fucosylation in Metastatic Breast Cancer Cells., Biomedicines, PMID 33322811
PXD021399 Dataset with its publication pending (from jPOST)Dataset title: Microparticle assisted precipitation screening method for robust drug target identificationPossible reference: Lyu, J. et al. (2020) Microparticle-Assisted Precipitation Screening Method for Robust Drug Target Identification., Anal Chem, PMID 32933243
PXD021395 Dataset with its publication pending (from PRIDE)Dataset title: Extracellular vesicle proteome of breast cancer patients with and without cognitive impairment following anthracycline-based chemotherapyPossible reference: Koh, YQ. et al. (2021) Extracellular Vesicle Proteome of Breast Cancer Patients with and Without Cognitive Impairment Following Anthracycline-based Chemotherapy: An Exploratory Study., Biomark Insights, PMID 34103887
PXD021378 (from jPOST)Dataset title: A Landscape of Ectodomain Shedding by Quantitative Protein TerminomicsPossible reference: Tsumagari, K. et al. (2021) Exploring the landscape of ectodomain shedding by quantitative protein terminomics., iScience, PMID 33796845
PXD021372 Dataset with its publication pending (from jPOST)Dataset title: Comparative phosphoproteomic analysis of raf22raf36 in ArabidopsisPossible reference: Kamiyama, Y. et al. (2021) Arabidopsis group C Raf-like protein kinases negatively regulate abscisic acid signaling and are direct substrates of SnRK2., Proc Natl Acad Sci U S A, PMID 34282011
PXD021371 Dataset with its publication pending (from PRIDE)Dataset title: DCLK1 small extracellular vesicle proteomePossible reference: Carli, ALE. et al. (2021) Cancer stem cell marker DCLK1 reprograms small extracellular vesicles toward migratory phenotype in gastric cancer cells., Proteomics, PMID 33991177
PXD021368 Dataset with its publication pending (from PRIDE)Dataset title: Isolation and characterization of multi-protein complexes enriched in the K-Cl co-transporter 2 from brain plasma membranesPossible reference: Smalley, JL. et al. (2020) Isolation and Characterization of Multi-Protein Complexes Enriched in the K-Cl Co-transporter 2 From Brain Plasma Membranes., Front Mol Neurosci, PMID 33192291
PXD021366 Dataset with its publication pending (from PRIDE)Dataset title: Phosphoproteome profiling uncovers a key role for CDKs in TNF signalingPossible reference: Tanzer, MC. et al. (2021) Phosphoproteome profiling uncovers a key role for CDKs in TNF signaling., Nat Commun, PMID 34663829
PXD021363 no publication (from MassIVE)Dataset title: Receptor-mediated clustering of FIP200 bypasses the role of LC3 lipidation in autophagyPossible reference: Ohnstad, AE. et al. (2020) Receptor-mediated clustering of FIP200 bypasses the role of LC3 lipidation in autophagy., EMBO J, PMID 33226137
PXD021347 no publication (from MassIVE)Dataset title: Proteomic analysis of Exaiptasia pallida Possible reference: Cziesielski, MJ. et al. (2018) Summarized datasheet for multi-omics response of three Exaiptasia strains to heat stress: a new way to process omics data., BMC Res Notes, PMID 30563556
PXD021342 Dataset with its publication pending (from jPOST)Dataset title: Microbial processing of jellyfish detritus in the oceanPossible reference: Tinta, T. et al. (2020) Microbial Processing of Jellyfish Detritus in the Ocean., Front Microbiol, PMID 33193256
PXD021332 Dataset with its publication pending (from PRIDE)Dataset title: Mechanism of extractive degradation by Phlebiopsis giganteaPossible reference: Hori, C. et al. (2014) Analysis of the Phlebiopsis gigantea genome, transcriptome and secretome provides insight into its pioneer colonization strategies of wood., PLoS Genet, PMID 25474575
PXD021330 Dataset with its publication pending (from PRIDE)Dataset title: Spatiotemporal processing of neural cell adhesion molecules 1 and 2 by BACE1 in vivoPossible reference: Kim, W. et al. (2021) Spatiotemporal processing of neural cell adhesion molecules 1 and 2 by BACE1 in vivo., J Biol Chem, PMID 33548223
PXD021327 no publication (from MassIVE)Dataset title: Tyrosine phosphorylation of IQGAP1 in the MET pathwayPossible reference: Hedman, AC. et al. (2020) Tyrosine phosphorylation of the scaffold protein IQGAP1 in the MET pathway alters function., J Biol Chem, PMID 33087447
PXD021326 no publication (from MassIVE)Dataset title: Tyrosine phosphorylation of IQGAP1 in the MET pathwayPossible reference: Hedman, AC. et al. (2020) Tyrosine phosphorylation of the scaffold protein IQGAP1 in the MET pathway alters function., J Biol Chem, PMID 33087447
PXD021324 Dataset with its publication pending (from jPOST)Dataset title: Analysis of infant gut microbiome reveals metabolic functional roles associated with healthy and atopic dermatitis using metaproteomicsPossible reference: Kingkaw, A. et al. (2020) Analysis of the infant gut microbiome reveals metabolic functional roles associated with healthy infants and infants with atopic dermatitis using metaproteomics., PeerJ, PMID 33033661
PXD021290 no publication (from MassIVE)Dataset title: A poplar rust effector protein associates with protein disulfide isomerase and enhance plant susceptibilityPossible reference: Madina, MH. et al. (2020) A Poplar Rust Effector Protein Associates with Protein Disulfide Isomerase and Enhances Plant Susceptibility., Biology (Basel), PMID 32947987
PXD021276 no publication (from MassIVE)Dataset title: eEF2K inhibition synergizes with Glutaminase and eIF4EBP1 inhibitors to suppress triple-negative breast cancer cell growth; impact on the proteomePossible reference: Ju, Y. et al. (2021) Inhibition of eEF2K synergizes with glutaminase inhibitors or 4EBP1 depletion to suppress growth of triple-negative breast cancer cells., Sci Rep, PMID 33911160
PXD021275 Dataset with its publication pending (from PRIDE)Dataset title: N-glycomic signature of stage II colorectal cancer and its association with the tumor microenvironmentPossible reference: Boyaval, F. et al. (2021) N-Glycomic Signature of Stage II Colorectal Cancer and Its Association With the Tumor Microenvironment., Mol Cell Proteomics, PMID 33581319
PXD021266 Dataset with its publication pending (from PRIDE)Dataset title: Structure dynamics of ApoA-I amyloidogenic variants in small HDL increase their ability to mediate cholesterol effluxPossible reference: Nilsson, O. et al. (2021) Structure dynamics of ApoA-I amyloidogenic variants in small HDL increase their ability to mediate cholesterol efflux., J Lipid Res, PMID 33410751
PXD021265 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic profiling reveals CDK6 upregulation as a targetable resistance mechanism for lenalidomide in multiple myelomaPossible reference: Ng, YLD. et al. (2022) Proteomic profiling reveals CDK6 upregulation as a targetable resistance mechanism for lenalidomide in multiple myeloma., Nat Commun, PMID 35197447
PXD021258 no publication (from MassIVE)Dataset title: Twinfilin1 controls lamellipodial protrusive activity and actin turnover during vertebrate gastrulationPossible reference: Devitt, CC. et al. (2021) Twinfilin1 controls lamellipodial protrusive activity and actin turnover during vertebrate gastrulation., J Cell Sci, PMID 34060614
PXD021249 Dataset with its publication pending (from PRIDE)Dataset title: Ablation of Btn1a1 leads to concurrent cell death and renewal in the mammary epithelium during lactationPossible reference: Jeong, J. et al. (2021) The butyrophilin 1a1 knockout mouse revisited: Ablation of Btn1a1 leads to concurrent cell death and renewal in the mammary epithelium during lactation., FASEB Bioadv, PMID 34938960
PXD021222 Dataset with its publication pending (from PRIDE)Dataset title: Inhibiting coronavirus replication by chemical ER stress, including SARS-CoV-2 and MERS-CoVPossible reference: Shaban, MS. et al. (2021) Multi-level inhibition of coronavirus replication by chemical ER stress., Nat Commun, PMID 34545074
PXD021218 Dataset with its publication pending (from PRIDE)Dataset title: Quantifying gene expression control by growth and metabolism reveals distinct regulation of central carbon metabolism genes in yeastPossible reference: Yu, R. et al. (2021) Quantifying absolute gene expression profiles reveals distinct regulation of central carbon metabolism genes in yeast., Elife, PMID 33720010
PXD021190 Dataset with its publication pending (from PRIDE)Dataset title: Seven Novel Genes Related to Cell Proliferation and Migration of VHL-Mutated PheochromocytomaPossible reference: Gao, S. et al. (2021) Seven Novel Genes Related to Cell Proliferation and Migration of VHL-Mutated Pheochromocytoma., Front Endocrinol (Lausanne), PMID 33828526
PXD021173 Dataset with its publication pending (from PRIDE)Dataset title: The mitochondrial surface receptor Tom70 protects the cytosol against mitoprotein-induced stressPossible reference: Backes, S. et al. (2021) The chaperone-binding activity of the mitochondrial surface receptor Tom70 protects the cytosol against mitoprotein-induced stress., Cell Rep, PMID 33826901
PXD021165 Dataset with its publication pending (from PRIDE)Dataset title: Overexpression of the human mutation P209L of cochaperone BAG3 in mousePossible reference: Fang, X. et al. (2019) P209L mutation in Bag3 does not cause cardiomyopathy in mice., Am J Physiol Heart Circ Physiol, PMID 30499714
PXD021160 Dataset with its publication pending (from PRIDE)Dataset title: Proteomics of Rat Proximal-Tubule Cell-Culture ModelsPossible reference: Khundmiri, SJ. et al. (2021) Transcriptomes of Major Proximal Tubule Cell Culture Models., J Am Soc Nephrol, PMID 33122286
PXD021143 Dataset with its publication pending (from PRIDE)Dataset title: Interactome of S65 phosphorylated NEDD8 and UbPossible reference: Stuber, K. et al. (2021) Structural and functional consequences of NEDD8 phosphorylation., Nat Commun, PMID 34642328
PXD021136 Dataset with its publication pending (from PRIDE)Dataset title: Decoding the signalling profile of hematopoietic progenitor kinase 1 (HPK1) in innate immunity: a proteomic approachPossible reference: Bader, A. et al. (2022) Decoding the signaling profile of hematopoietic progenitor kinase 1 (HPK1) in innate immunity: A proteomic approach., Eur J Immunol, PMID 35099066
PXD021126 Dataset with its publication pending (from PRIDE)Dataset title: Structural analysis of the PTEN:P-Rex2 signaling node reveals how cancer-associated mutations coordinate to hyperactivate Rac1Possible reference: D'Andrea, L. et al. (2021) Structural analysis of the PTEN:P-Rex2 signaling complex reveals how cancer-associated mutations coordinate to hyperactivate Rac1., Sci Signal, PMID 33947796
PXD021124 Dataset with its publication pending (from PRIDE)Dataset title: Identification of IgE reactive proteins from Aspergillus terreus using mass spectrometry.Possible reference: Karmakar, B. et al. (2020) Identification and biochemical characterization of Asp t 36, a new fungal allergen from Aspergillus terreus., J Biol Chem, PMID 33454019
PXD021103 Dataset with its publication pending (from iProX)Dataset title: Omics study reveals abnormal alterations of breastmilk proteins and metabolites in puerperant women with COVID-19Possible reference: Zhao, Y. et al. (2020) Omics study reveals abnormal alterations of breastmilk proteins and metabolites in puerperant women with COVID-19., Signal Transduct Target Ther, PMID 33097684
PXD021096 Dataset with its publication pending (from PRIDE)Dataset title: Human Neutrophils Phosphoproteome in Systemic Lupus ErythematosusPossible reference: Bashant, KR. et al. (2021) Proteomic, biomechanical and functional analyses define neutrophil heterogeneity in systemic lupus erythematosus., Ann Rheum Dis, PMID 32988843
PXD021092 Dataset with its publication pending (from iProX)Dataset title: Proteomic Analysis of Healthy and Atretic Porcine Follicular Granulosa CellsPossible reference: Shan, X. et al. (2021) Proteomic analysis of healthy and atretic porcine follicular granulosa cells., J Proteomics, PMID 33130110
PXD021088 Dataset with its publication pending (from PRIDE)Dataset title: Dystrophin domains R4-15 and R20-23Possible reference: Nelson, DM. et al. (2020) Rapid, redox-mediated mechanical susceptibility of the cortical microtubule lattice in skeletal muscle., Redox Biol, PMID 33002761
PXD021086 Dataset with its publication pending (from PRIDE)Dataset title: Proteo-metabolomic study of olive (cv. ‘Chondrolia Chalkidikis’) drupe development and maturationPossible reference: Karagiannis, E. et al. (2021) Proteo-metabolomic journey across olive drupe development and maturation., Food Chem, PMID 34147896
PXD021085 Dataset with its publication pending (from PRIDE)Dataset title: Chromatin modifiers and recombination factors promote a telomere fold-back structure, that is lost during replicative senescencePossible reference: Wagner, T. et al. (2020) Chromatin modifiers and recombination factors promote a telomere fold-back structure, that is lost during replicative senescence., PLoS Genet, PMID 33370275
PXD021076 Dataset with its publication pending (from PRIDE)Dataset title: Proteomics profiling of pediatric choroid plexus tumorsPossible reference: Hesham, D. et al. (2024) Multi-omics analyses of choroid plexus carcinoma cell lines reveal potential targetable pathways and alterations., J Neurooncol, PMID 38190092
PXD021073 Dataset with its publication pending (from iProX)Dataset title: Metabolic Remodeling in Recovered COVID-19 PatientsPossible reference: Tschöpe, C. et al. (2021) Myocarditis and inflammatory cardiomyopathy: current evidence and future directions., Nat Rev Cardiol, PMID 33046850
PXD021068 Dataset with its publication pending (from iProX)Dataset title: Screening and identification of endometrium proteins as novel potential biomarkersPossible reference: Bae, SJ. et al. (2022) Identification and analysis of novel endometriosis biomarkers via integrative bioinformatics., Front Endocrinol (Lausanne), PMID 36339397
PXD021059 Dataset with its publication pending (from PRIDE)Dataset title: Proteome-wide Analysis of Lysine 2-hydroxyisobutyrylation in the Phytopathogenic Fungus Botrytis cinereaPossible reference: Xu, Y. et al. (2020) Proteome-Wide Analysis of Lysine 2-Hydroxyisobutyrylation in the Phytopathogenic Fungus Botrytis cinerea., Front Microbiol, PMID 33329453
PXD021049 Dataset with its publication pending (from jPOST)Dataset title: High accurate and precise quantification analysis of GeLC-MS/MS with dimethyl labeling.Possible reference: Konno, R. et al. (2021) Highly accurate and precise quantification strategy using stable isotope dimethyl labeling coupled with GeLC-MS/MS., Biochem Biophys Res Commun, PMID 33684618
PXD021044 Dataset with its publication pending (from jPOST)Dataset title: Proteome analysis of valve mesenchymal cellsPossible reference: Maleki, S. et al. (2016) Mesenchymal state of intimal cells may explain higher propensity to ascending aortic aneurysm in bicuspid aortic valves., Sci Rep, PMID 27779199
PXD021042 Dataset with its publication pending (from PRIDE)Dataset title: Comparative analysis of maca (Lepidium meyenii) proteome profiles reveals insights into response mechanisms of herbal plants to high-temperature stressPossible reference: Wang, ZQ. et al. (2020) Comparative analysis of maca (Lepidium meyenii) proteome profiles reveals insights into response mechanisms of herbal plants to high-temperature stress., BMC Plant Biol, PMID 32938390
PXD021029 Dataset with its publication pending (from iProX)Dataset title: Dissection of anti-tumor activity of histone deacetylase inhibitor SAHA in NPC cells via quantitative phosphoproteomicsPossible reference: Huang, H. et al. (2020) Dissection of Anti-tumor Activity of Histone Deacetylase Inhibitor SAHA in Nasopharyngeal Carcinoma Cells via Quantitative Phosphoproteomics., Front Cell Dev Biol, PMID 33324635
PXD021026 Dataset with its publication pending (from PRIDE)Dataset title: Proteomics characterisation of the L929 cell supernatant and its role in BMDM differentiationPossible reference: Heap, RE. et al. (2021) Proteomics characterisation of the L929 cell supernatant and its role in BMDM differentiation., Life Sci Alliance, PMID 33853969
PXD021014 Dataset with its publication pending (from PRIDE)Dataset title: Compartmentalized proteomic profiling outlines the crucial role of the Classical secretory pathway during recombinant protein production in Chinese hamster ovary cellsPossible reference: Pérez-Rodriguez, S. et al. (2021) Compartmentalized Proteomic Profiling Outlines the Crucial Role of the Classical Secretory Pathway during Recombinant Protein Production in Chinese Hamster Ovary Cells., ACS Omega, PMID 34056395
PXD021004 Dataset with its publication pending (from PRIDE)Dataset title: HUMAN BLOOD SERUM PROTEOME CHANGES AFTER 6 HOURS OF SLEEP DEPRIVATION AT NIGHTPossible reference: Bjørkum, AA. et al. (2024) Human serum proteomics reveals a molecular signature after one night of sleep deprivation., Sleep Adv, PMID 39131770
PXD020961 no publication (from MassIVE)Dataset title: Glycoproteomic Analysis of Human Urinary ExosomesPossible reference: Saraswat, M. et al. (2015) N-linked (N-) glycoproteomics of urinary exosomes. [Corrected]., Mol Cell Proteomics, PMID 25452312
PXD020954 Dataset with its publication pending (from PRIDE)Dataset title: Chicken microbiome LC - MS / MSPossible reference: Devreese, M. et al. (2014) Effect of administration route and dose escalation on plasma and intestinal concentrations of enrofloxacin and ciprofloxacin in broiler chickens., BMC Vet Res, PMID 25440469
PXD020924 Dataset with its publication pending (from PRIDE)Dataset title: Different research approaches in unraveling the venom proteome of Naja asheiPossible reference: Hus, KK. et al. (2020) Different Research Approaches in Unraveling the Venom Proteome of Naja ashei., Biomolecules, PMID 32899462
PXD020916 no publication (from MassIVE)Dataset title: Selective dephosphorylation by PP2A-B55 directs the meiosis I - meiosis II transition in oocytesPossible reference: Swartz, SZ. et al. (2021) Selective dephosphorylation by PP2A-B55 directs the meiosis I-meiosis II transition in oocytes., Elife, PMID 34342579
PXD020902 Dataset with its publication pending (from PRIDE)Dataset title: Fecal metaproteomics reveals reduced gut inflammation and changed microbial metabolism following lifestyle-induced weight lossPossible reference: Biemann, R. et al. (2021) Fecal Metaproteomics Reveals Reduced Gut Inflammation and Changed Microbial Metabolism Following Lifestyle-Induced Weight Loss., Biomolecules, PMID 34066026
PXD020871 Dataset with its publication pending (from PRIDE)Dataset title: Inflammatory fibroblasts mediate resistance to neoadjuvant therapy in rectal cancerPossible reference: Nicolas, AM. et al. (2022) Inflammatory fibroblasts mediate resistance to neoadjuvant therapy in rectal cancer., Cancer Cell, PMID 35120600
PXD020870 Dataset with its publication pending (from PRIDE)Dataset title: Nuclear phosphatidylinositol (3,4,5) triphosphate interactome uncovers an enrichment in nucleolar proteinsPossible reference: Mazloumi Gavgani, F. et al. (2021) Nuclear Phosphatidylinositol 3,4,5-Trisphosphate Interactome Uncovers an Enrichment in Nucleolar Proteins., Mol Cell Proteomics, PMID 34048982
PXD020866 Dataset with its publication pending (from PRIDE)Dataset title: Comparative phosphoproteomics of classical bordetellae elucidates the role of serine, threonine and tyrosine phosphorylation in Bordetella biology and virulencePossible reference: Luu, LDW. et al. (2021) Comparative Phosphoproteomics of Classical Bordetellae Elucidates the Potential Role of Serine, Threonine and Tyrosine Phosphorylation in Bordetella Biology and Virulence., Front Cell Infect Microbiol, PMID 33928046
PXD020859 Dataset with its publication pending (from PRIDE)Dataset title: Cross-linking mass spectrometry uncovers protein interactions and functional assemblies in synaptic vesicle membranesPossible reference: Wittig, S. et al. (2021) Cross-linking mass spectrometry uncovers protein interactions and functional assemblies in synaptic vesicle membranes., Nat Commun, PMID 33558502
PXD020857 Dataset with its publication pending (from PRIDE)Dataset title: Implementation of microfluidics for antimicrobial susceptibility assays: issues and optimization requirementsPossible reference: Parsley, NC. et al. (2020) Implementation of Microfluidics for Antimicrobial Susceptibility Assays: Issues and Optimization Requirements., Front Cell Infect Microbiol, PMID 33042872
PXD020856 Dataset with its publication pending (from PRIDE)Dataset title: Harnessing Ionic Selectivity In Acetyltransferase Chemoproteomic ProbesPossible reference: Jing, Y. et al. (2021) Harnessing Ionic Selectivity in Acetyltransferase Chemoproteomic Probes., ACS Chem Biol, PMID 33373188
PXD020854 no publication (from MassIVE)Dataset title: Proteomes of Robust Yarrowia lipolytica Isolates Cultivated in Biomass Hydrolysate Reveal Key Processes Impacting Sugar Utilization and Lipid DegradationPossible reference: Walker, C. et al. (2021) Exploring Proteomes of Robust Yarrowia lipolytica Isolates Cultivated in Biomass Hydrolysate Reveals Key Processes Impacting Mixed Sugar Utilization, Lipid Accumulation, and Degradation., mSystems, PMID 34342539
PXD020849 Dataset with its publication pending (from PRIDE)Dataset title: Structural inventory of native ribosomal ABCE1-43S pre-initiation complexPossible reference: Kratzat, H. et al. (2021) A structural inventory of native ribosomal ABCE1-43S pre-initiation complexes., EMBO J, PMID 33289941
PXD020805 Dataset with its publication pending (from PRIDE)Dataset title: A vascular phosphoproteome atlas unveils a functional Tie‑Wnt signalling axis in the liverPossible reference: Inverso, D. et al. (2021) A spatial vascular transcriptomic, proteomic, and phosphoproteomic atlas unveils an angiocrine Tie-Wnt signaling axis in the liver., Dev Cell, PMID 34038707
PXD020804 Dataset with its publication pending (from PRIDE)Dataset title: The GAR Domain Determines Subcellular Localization of the Growth Controlling RNA Binding Protein NucleolinPossible reference: Doron-Mandel, E. et al. (2021) The glycine arginine-rich domain of the RNA-binding protein nucleolin regulates its subcellular localization., EMBO J, PMID 34515347
PXD020801 no publication (from MassIVE)Dataset title: HUPO HPP Phosphopeptide ChallengePossible reference: Hoopmann, MR. et al. (2020) Insights from the First Phosphopeptide Challenge of the MS Resource Pillar of the HUPO Human Proteome Project., J Proteome Res, PMID 33166149
PXD020796 no publication (from MassIVE)Dataset title: Elongin A regulates transcription in vivo through enhanced RNA polymerase processivityPossible reference: Wang, Y. et al. (2021) Elongin A regulates transcription in vivo through enhanced RNA polymerase processivity., J Biol Chem, PMID 33298525
PXD020795 Dataset with its publication pending (from PRIDE)Dataset title: Five microRNAs in serum are able to differentiate breast cancer patients from healthy individualsPossible reference: Feliciano, A. et al. (2020) Five microRNAs in Serum Are Able to Differentiate Breast Cancer Patients From Healthy Individuals., Front Oncol, PMID 33224883
PXD020792 Dataset with its publication pending (from PRIDE)Dataset title: Trans-2-enoyl-CoA reductase limits Ca2+ accumulation in the endoplasmic reticulum by inhibiting SERCA2b Ca2+ pumpPossible reference: Uchida, Y. et al. (2021) Trans-2-enoyl-CoA reductase limits Ca2+ accumulation in the endoplasmic reticulum by inhibiting the Ca2+ pump SERCA2b., J Biol Chem, PMID 33482198
PXD020790 Dataset with its publication pending (from PRIDE)Dataset title: Global analysis of lysine 2-hydroxyisobutyrylation in wheat leafPossible reference: Feng, B. et al. (2021) Systematic analysis of lysine 2-hydroxyisobutyrylation posttranslational modification in wheat leaves., PLoS One, PMID 34138952
PXD020788 Dataset with its publication pending (from PRIDE)Dataset title: Global analysis of lysine 2-hydroxyisobutyrylation in wheat leafPossible reference: Feng, B. et al. (2021) Systematic analysis of lysine 2-hydroxyisobutyrylation posttranslational modification in wheat leaves., PLoS One, PMID 34138952
PXD020760 Dataset with its publication pending (from PRIDE)Dataset title: A vascular phosphoproteome atlas unveils a functional Tie‑Wnt signalling axis in the liverPossible reference: Inverso, D. et al. (2021) A spatial vascular transcriptomic, proteomic, and phosphoproteomic atlas unveils an angiocrine Tie-Wnt signaling axis in the liver., Dev Cell, PMID 34038707
PXD020757 Dataset with its publication pending (from PRIDE)Dataset title: Mechanisms and Novel Proteins for Iron Oxide Mineral Reduction in the Hyperthermophilic Crenarchaeon Pyrodictium delaneyiPossible reference: Kashyap, S. et al. (2021) Microbe-Mineral Interaction and Novel Proteins for Iron Oxide Mineral Reduction in the Hyperthermophilic Crenarchaeon Pyrodictium delaneyi., Appl Environ Microbiol, PMID 33419739
PXD020756 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic analysis of dexamethasone effects on cartilage breakdownPossible reference: Black, RM. et al. (2020) Proteomic analysis reveals dexamethasone rescues matrix breakdown but not anabolic dysregulation in a cartilage injury model., Osteoarthr Cartil Open, PMID 34322675
PXD020746 Dataset with its publication pending (from PRIDE)Dataset title: Global Proteomic Analysis of Lysine lactylation in The Plant Pathogen Botrytis cinereaPossible reference: Gao, M. et al. (2020) Systematic Analysis of Lysine Lactylation in the Plant Fungal Pathogen Botrytis cinerea., Front Microbiol, PMID 33193272
PXD020740 Dataset with its publication pending (from PRIDE)Dataset title: Chemical proteomic profiling reveals protein interactors of the alarmones diadenosine triphosphate and tetraphosphatePossible reference: Krüger, L. et al. (2021) Chemical proteomic profiling reveals protein interactors of the alarmones diadenosine triphosphate and tetraphosphate., Nat Commun, PMID 34608152
PXD020736 no publication (from MassIVE)Dataset title: The Capture of a Disabled Proteasome Identifies Erg25 as a Substrate for Endoplasmic Reticulum Associated DegradationPossible reference: Buck, TM. et al. (2020) The Capture of a Disabled Proteasome Identifies Erg25 as a Substrate for Endoplasmic Reticulum Associated Degradation., Mol Cell Proteomics, PMID 32868373
PXD020731 Dataset with its publication pending (from PRIDE)Dataset title: ErbB2 drives Yap activation during cardiac regenerationPossible reference: Aharonov, A. et al. (2020) ERBB2 drives YAP activation and EMT-like processes during cardiac regeneration., Nat Cell Biol, PMID 33046882
PXD020719 Dataset with its publication pending (from PRIDE)Dataset title: Integration of JAK/STAT receptor-ligand trafficking, signalling and gene expression in Drosophila melanogaster cellsPossible reference: Moore, R. et al. (2020) Integration of JAK/STAT receptor-ligand trafficking, signalling and gene expression in Drosophila melanogaster cells., J Cell Sci, PMID 32917740
PXD020716 Dataset with its publication pending (from iProX)Dataset title: Deep eutectic solvents-based polymer monolith incorporated with titanium dioxide nanotubes (TNTs) for specific recognition of the proteinsPossible reference: Zhang, X. et al. (2020) Deep eutectic solvents-based polymer monolith incorporated with titanium dioxide nanotubes for specific recognition of proteins., Anal Chim Acta, PMID 33190706
PXD020708 Dataset with its publication pending (from jPOST)Dataset title: Proteome analysis of membranes from renal ischemia-reperfusion injury mouse models.Possible reference: Suzuki, T. et al. (2016) Mitochonic Acid 5 Binds Mitochondria and Ameliorates Renal Tubular and Cardiac Myocyte Damage., J Am Soc Nephrol, PMID 26609120
PXD020679 Mayfield AB. Proteomic Signatures of Corals from Thermodynamic Reefs. Mayfield AB (2020) Proteomic Signatures of Corals from Thermodynamic Reefs. Microorganisms (in press). (from MassIVE)Dataset title: Proteomic signatures of corals from thermodynamic reefsPossible reference: Ricaurte, M. et al. (2016) Proteomic analysis of bleached and unbleached Acropora palmata, a threatened coral species of the Caribbean., Mar Pollut Bull, PMID 27105725
PXD020644 Dataset with its publication pending (from PRIDE)Dataset title: A mass spectrometry-based targeted assay for detection of SARS-CoV-2 antigen from clinical specimensPossible reference: Renuse, S. et al. (2021) A mass spectrometry-based targeted assay for detection of SARS-CoV-2 antigen from clinical specimens., EBioMedicine, PMID 34229274
PXD020640 Dataset with its publication pending (from PRIDE)Dataset title: mice lung TMT labeling proteomePossible reference: Yao, C. et al. (2015) Overexpression of Catalase Diminishes Oxidative Cysteine Modifications of Cardiac Proteins., PLoS One, PMID 26642319
PXD020636 Dataset with its publication pending (from PRIDE)Dataset title: A structural mechanism for PP2A-B56alpha inhibition by CIP2APossible reference: Pavic, K. et al. (2023) Structural mechanism for inhibition of PP2A-B56α and oncogenicity by CIP2A., Nat Commun, PMID 36854761
PXD020633 Dataset with its publication pending (from PRIDE)Dataset title: Polydisperse molecular architecture of connexin 26/30 heteromeric hemichannels revealed by AFM imagingPossible reference: Naulin, PA. et al. (2020) Polydisperse molecular architecture of connexin 26/30 heteromeric hemichannels revealed by atomic force microscopy imaging., J Biol Chem, PMID 32887797
PXD020618 Dataset with its publication pending (from PRIDE)Dataset title: Clinical Proteomics of Metastatic Melanoma Reveals Profiles of Organ-Specificity and Treatment ResistancePossible reference: Beck, L. et al. (2021) Clinical Proteomics of Metastatic Melanoma Reveals Profiles of Organ Specificity and Treatment Resistance., Clin Cancer Res, PMID 33446566
PXD020612 Dataset with its publication pending (from PRIDE)Dataset title: USP15 deubiquitinase safeguards hematopoiesis and genome integrity in hematopoietic stem cells and leukemia cellsPossible reference: van den Berk, P. et al. (2020) USP15 Deubiquitinase Safeguards Hematopoiesis and Genome Integrity in Hematopoietic Stem Cells and Leukemia Cells., Cell Rep, PMID 33378683
PXD020611 Dataset with its publication pending (from PRIDE)Dataset title: S. cerevisiae engineered chassis for dicarboxylic acid productionPossible reference: Kruyer, NS. et al. (2017) Metabolic engineering strategies to bio-adipic acid production., Curr Opin Biotechnol, PMID 28365404
PXD020607 Dataset with its publication pending (from PRIDE)Dataset title: The component parts of bacteriophage virions accurately defined by a new machine-learning approach built on evolutionary features.Possible reference: Thung, TY. et al. (2021) Component Parts of Bacteriophage Virions Accurately Defined by a Machine-Learning Approach Built on Evolutionary Features., mSystems, PMID 34042467
PXD020601 Dataset with its publication pending (from PRIDE)Dataset title: Serum proteomics in COVID-19 patients: Altered coagulation and complement status as a function of IL-6 levelPossible reference: D'Alessandro, A. et al. (2020) Serum Proteomics in COVID-19 Patients: Altered Coagulation and Complement Status as a Function of IL-6 Level., J Proteome Res, PMID 32786691
PXD020594 no publication (from MassIVE)Dataset title: Novel proteomic profiling of epididymal extracellular vesicles in the domestic cat reveals proteins related to sequential sperm maturation with differences observed between normospermic and teratospermic individualsPossible reference: Rowlison, T. et al. (2020) Novel Proteomic Profiling of Epididymal Extracellular Vesicles in the Domestic Cat Reveals Proteins Related to Sequential Sperm Maturation with Differences Observed between Normospermic and Teratospermic Individuals., Mol Cell Proteomics, PMID 33008835
PXD020577 Dataset with its publication pending (from PRIDE)Dataset title: Shewanella oneidensis outer membrane and outer membrane vesiclesPossible reference: Pirbadian, S. et al. (2014) Shewanella oneidensis MR-1 nanowires are outer membrane and periplasmic extensions of the extracellular electron transport components., Proc Natl Acad Sci U S A, PMID 25143589
PXD020575 Dataset with its publication pending (from PRIDE)Dataset title: An FGF-2 signaling pathway that is activated in aged skeletal muscle promotes intramuscular adipogenesisPossible reference: Mathes, S. et al. (2021) FGF-2-dependent signaling activated in aged human skeletal muscle promotes intramuscular adipogenesis., Proc Natl Acad Sci U S A, PMID 34493647
PXD020565 Dataset with its publication pending (from PRIDE)Dataset title: "Analysis of Zika virus capsid-Aedes aegypti mosquito interactome reveals pro-viral host factors critical for establishing infection"Possible reference: Gestuveo, RJ. et al. (2021) Analysis of Zika virus capsid-Aedes aegypti mosquito interactome reveals pro-viral host factors critical for establishing infection., Nat Commun, PMID 33986255
PXD020539 Dataset with its publication pending (from PRIDE)Dataset title: Contribution of the Unfolded Protein Response (UPR) transcription factor XBP1 to brain agingPossible reference: Marcora, MS. et al. (2017) Amyloid-β42 clearance and neuroprotection mediated by X-box binding protein 1 signaling decline with aging in the Drosophila brain., Neurobiol Aging, PMID 28917667
PXD020511 Dataset with its publication pending (from PRIDE)Dataset title: Numerous post-translational modifications of RNA polymerase II subunit Rpb4 link transcription to post-transcriptional mechanismsPossible reference: Richard, S. et al. (2021) Numerous Post-translational Modifications of RNA Polymerase II Subunit Rpb4/7 Link Transcription to Post-transcriptional Mechanisms., Cell Rep, PMID 33440147
PXD020488 no publication (from MassIVE)Dataset title: Sialylation of Asparagine 612 inhibits Aconitase activity during mouse sperm capacitation; A possible mechanism for the switch from oxidative phosphorylation to glycolysis.Possible reference: Silva Balbin Villaverde, AI. et al. (2020) Sialylation of Asparagine 612 Inhibits Aconitase Activity during Mouse Sperm Capacitation; a Possible Mechanism for the Switch from Oxidative Phosphorylation to Glycolysis., Mol Cell Proteomics, PMID 32839225
PXD020481 Dataset with its publication pending (from PRIDE)Dataset title: Light-mediated discovery of surfaceome nanoscale organization and intercellular receptor interaction networksPossible reference: Müller, M. et al. (2021) Light-mediated discovery of surfaceome nanoscale organization and intercellular receptor interaction networks., Nat Commun, PMID 34857745
PXD020470 Dataset with its publication pending (from PRIDE)Dataset title: A Co-culture System Reveals a Cross-talk between Alveolar Epithelium and Pulmonary Microvascular Endothelium during SARS-CoV-2 InfectionPossible reference: Wang, P. et al. (2020) A cross-talk between epithelium and endothelium mediates human alveolar-capillary injury during SARS-CoV-2 infection., Cell Death Dis, PMID 33293527
PXD020442 Dataset with its publication pending (from PRIDE)Dataset title: FAIMS analysis of bacterial glycopeptidesPossible reference: Ulasi, GN. et al. (2015) Comprehensive mapping of O-glycosylation in flagellin from Campylobacter jejuni 11168: A multienzyme differential ion mobility mass spectrometry approach., Proteomics, PMID 25884275
PXD020426 Dataset with its publication pending (from PRIDE)Dataset title: Heterotypic signaling between dermal fibroblasts and melanoma cells induces phenotypic plasticity and proteome rearrangement in malignant cellsPossible reference: Pessotti, DS. et al. (2020) Heterotypic signaling between dermal fibroblasts and melanoma cells induces phenotypic plasticity and proteome rearrangement in malignant cells., Biochim Biophys Acta Proteins Proteom, PMID 32866629
PXD020419 no publication (from MassIVE)Dataset title: Mammalian telomeres reforged with non-telomeric sequencesPossible reference: Kim, C. et al. (2021) Telomeres reforged with non-telomeric sequences in mouse embryonic stem cells., Nat Commun, PMID 33597549
PXD020414 Dataset with its publication pending (from PRIDE)Dataset title: Label-free quantitative proteomic analysis of insect larval and metamorphic moltsPossible reference: Si, W. et al. (2020) Label-free quantitative proteomic analysis of insect larval and metamorphic molts., BMC Dev Biol, PMID 33234135
PXD020407 Dataset with its publication pending (from jPOST)Dataset title: Retention Time Prediction Using Neural Networks Increases Identifications in Crosslinking Mass SpectrometryPossible reference: Giese, SH. et al. (2021) Retention time prediction using neural networks increases identifications in crosslinking mass spectrometry., Nat Commun, PMID 34050149
PXD020401 Dataset with its publication pending (from PRIDE)Dataset title: TPL-2 kinase induces phagosome acidification to promote macrophage killing of Staphylococcus aureusPossible reference: Breyer, F. et al. (2021) TPL-2 kinase induces phagosome acidification to promote macrophage killing of bacteria., EMBO J, PMID 33881780
PXD020400 Dataset with its publication pending (from PRIDE)Dataset title: Cellular and extracellular proteome of the animal pathogen Corynebacterium silvaticum, a close relative of zoonotic Corynebacterium ulcerans and Corynebacterium pseudotuberculosisPossible reference: Möller, J. et al. (2020) Cellular and Extracellular Proteome of the Animal Pathogen Corynebacterium silvaticum, a Close Relative of Zoonotic Corynebacterium ulcerans and Corynebacterium pseudotuberculosis., Proteomes, PMID 32806579
PXD020398 Dataset with its publication pending (from PRIDE)Dataset title: Support-vector-machine learning analysis of the human cerebrovascular thrombi proteome: an exploratory studyPossible reference: Dargazanli, C. et al. (2020) Machine Learning Analysis of the Cerebrovascular Thrombi Proteome in Human Ischemic Stroke: An Exploratory Study., Front Neurol, PMID 33240201
PXD020394 Dataset with its publication pending (from PRIDE)Dataset title: Quantitative proteomic dataset from oro- and naso-pharyngeal swabs used for COVID-19 diagnosis: detection of viral proteins and host’s biological processes altered by the infectionPossible reference: Rivera, B. et al. (2020) Quantitative proteomic dataset from oro- and naso-pharyngeal swabs used for COVID-19 diagnosis: Detection of viral proteins and host's biological processes altered by the infection., Data Brief, PMID 32835036
PXD020393 Dataset with its publication pending (from jPOST)Dataset title: Proteomic analysis of CD9 positive EVsPossible reference: Aqrawi, LA. et al. (2017) Identification of potential saliva and tear biomarkers in primary Sjögren's syndrome, utilising the extraction of extracellular vesicles and proteomics analysis., Arthritis Res Ther, PMID 28122643
PXD020381 Dataset with its publication pending (from PRIDE)Dataset title: A multipass membrane protein interacts with the cGMP-dependent protein kinase to regulate critical calcium signals in malaria parasitesPossible reference: Balestra, AC. et al. (2021) Ca2+ signals critical for egress and gametogenesis in malaria parasites depend on a multipass membrane protein that interacts with PKG., Sci Adv, PMID 33762339
PXD020378 Dataset with its publication pending (from PRIDE)Dataset title: Phenotypical adaptation of Pseudomonas aeruginosa in the presence of siderophore-antibiotic conjugates during epithelial cell infectionPossible reference: Perraud, Q. et al. (2020) Phenotypic Adaptation of Pseudomonas aeruginosa in the Presence of Siderophore-Antibiotic Conjugates during Epithelial Cell Infection., Microorganisms, PMID 33218210
PXD020372 Dataset with its publication pending (from iProX)Dataset title: TMT proteomic analysis of Methanogenic archaeonPossible reference: Vaudel, M. et al. (2012) Integral quantification accuracy estimation for reporter ion-based quantitative proteomics (iQuARI)., J Proteome Res, PMID 22874012
PXD020367 Dataset with its publication pending (from PRIDE)Dataset title: Autophagosome Proteomics of HEK293 cellsPossible reference: Ghislat, G. et al. (2012) Annexin A5 stimulates autophagy and inhibits endocytosis., J Cell Sci, PMID 22266906
PXD020365 Dataset with its publication pending (from PRIDE)Dataset title: Spleen proteomics data from high fat diet fed micePossible reference: Svahn, SL. et al. (2020) Spleen proteomics data from high fat diet fed mice., Data Brief, PMID 32904176
PXD020363 Dataset with its publication pending (from jPOST)Dataset title: Decellularized splenic matrix as a scaffold for spleen bioengineeringPossible reference: Gibson, M. et al. (2014) Tissue extracellular matrix nanoparticle presentation in electrospun nanofibers., Biomed Res Int, PMID 24971329
PXD020355 Dataset with its publication pending (from PRIDE)Dataset title: Prothrombin is a binding partner of the human Receptor of Advanced Glycation End productsPossible reference: Degani, G. et al. (2020) Prothrombin is a binding partner of the human receptor of advanced glycation end products., J Biol Chem, PMID 32665403
PXD020343 Dataset with its publication pending (from PRIDE)Dataset title: Specific proteome changes in platelets from individuals with GATA1-, GFI1B- and RUNX1-linked bleeding disordersPossible reference: Van Bergen, MGJM. et al. (2021) Specific proteome changes in platelets from individuals with GATA1-, GFI1B-, and RUNX1-linked bleeding disorders., Blood, PMID 33690840
PXD020286 Dataset with its publication pending (from PRIDE)Dataset title: Profiling of human spermatozoa glycoproteins by LC/MS/MSPossible reference: Selvaraju, S. et al. (2018) Current status of sperm functional genomics and its diagnostic potential of fertility in bovine (Bos taurus)., Syst Biol Reprod Med, PMID 29537884
PXD020260 Dataset with its publication pending (from PRIDE)Dataset title: Quantitative Proteomics Identifies Sytenin-1 as a Universal Biomarker of ExosomesPossible reference: Navajas, R. et al. (2019) Serum Exosome Isolation by Size-Exclusion Chromatography for the Discovery and Validation of Preeclampsia-Associated Biomarkers., Methods Mol Biol, PMID 30852814
PXD020258 Dataset with its publication pending (from PRIDE)Dataset title: Therapeutic anti-glioma effect of the combined action of PCSK inhibitor with the anti-tumoral factors secreted by Poly (I:C) - stimulated macrophagesPossible reference: Rose, M. et al. (2022) Therapeutic anti-glioma effect of the combined action of PCSK inhibitor with the anti-tumoral factors secreted by Poly (I:C)-stimulated macrophages., Cancer Gene Ther, PMID 33402730
PXD020255 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic analysis of adipose depots after intermittent fasting reveals visceral fat preservation mechanismsPossible reference: Harney, DJ. et al. (2021) Proteomics analysis of adipose depots after intermittent fasting reveals visceral fat preservation mechanisms., Cell Rep, PMID 33657384
PXD020247 Dataset with its publication pending (from PRIDE)Dataset title: TPL-2 kinase induces phagosome acidification to promote macrophage killing of bacteriaPossible reference: Breyer, F. et al. (2021) TPL-2 kinase induces phagosome acidification to promote macrophage killing of bacteria., EMBO J, PMID 33881780
PXD020229 Dataset with its publication pending (from PRIDE)Dataset title: Crosslinking mass spectrometry of the unconventional kinetoplastid kinetochore protein KKT4Possible reference: Ludzia, P. et al. (2021) Structural characterization of KKT4, an unconventional microtubule-binding kinetochore protein., Structure, PMID 33915106
PXD020204 Dataset with its publication pending (from PRIDE)Dataset title: A phosphoproteomic analysis of platelets in severe obesity uncovers platelet reactivity and signaling pathways alterationsPossible reference: Barrachina, MN. et al. (2021) Phosphoproteomic Analysis of Platelets in Severe Obesity Uncovers Platelet Reactivity and Signaling Pathways Alterations., Arterioscler Thromb Vasc Biol, PMID 33147989
PXD020197 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic profiling of brain mitochondrial-derived vesiclesPossible reference: Roberts, RF. et al. (2021) Proteomic Profiling of Mitochondrial-Derived Vesicles in Brain Reveals Enrichment of Respiratory Complex Sub-assemblies and Small TIM Chaperones., J Proteome Res, PMID 33242952
PXD020172 Dataset with its publication pending (from iProX)Dataset title: Sublethal effects of carbendazim on beesPossible reference: Tong, Z. et al. (2018) A survey of multiple pesticide residues in pollen and beebread collected in China., Sci Total Environ, PMID 30021322
PXD020154 no publication (from MassIVE)Dataset title: Quantitative Proteomic Analysis of Mouse Fetal and Adult Hematopoietic Progenitor CellsPossible reference: Pimkova, K. et al. (2022) Quantitative analysis of redox proteome reveals oxidation-sensitive protein thiols acting in fundamental processes of developmental hematopoiesis., Redox Biol, PMID 35640380
PXD020153 Witzel, K., Matros, A. Fructans are differentially distributed in root tissues of asparagus. Cells, 2020, 9(9). doi: 10.3390/cells9091943. (from MassIVE)Dataset title: Fructooligosaccharides are differentially distributed in root tissues of asparagusPossible reference: Witzel, K. et al. (2020) Fructans Are Differentially Distributed in Root Tissues of Asparagus., Cells, PMID 32842694
PXD020151 Dataset with its publication pending (from PRIDE)Dataset title: Biliary Tract Carcinogenesis Model Based on Bile MetaproteomicsPossible reference: Arteta, AA. et al. (2020) Biliary Tract Carcinogenesis Model Based on Bile Metaproteomics., Front Oncol, PMID 32793466
PXD020146 no publication (from MassIVE)Dataset title: Supplementary information PNAS MS# 2020-05506Possible reference: Parker Harp, CR. et al. (2019) Neutrophils promote VLA-4-dependent B cell antigen presentation and accumulation within the meninges during neuroinflammation., Proc Natl Acad Sci U S A, PMID 31699814
PXD020136 Dataset with its publication pending (from PRIDE)Dataset title: The role of RodAp-conserved cysteine residues in the Aspergillus fumigatus conidial surface organizationPossible reference: Valsecchi, I. et al. (2020) The Role of RodA-Conserved Cysteine Residues in the Aspergillus fumigatus Conidial Surface Organization., J Fungi (Basel), PMID 32859091
PXD020115 Dataset with its publication pending (from jPOST)Dataset title: The Liquid Chromatography/Tandem Mass Spectrometry-Based Quantification of Angiotensin PeptidesPossible reference: He, C. et al. (2020) Development of a novel nanoflow liquid chromatography-parallel reaction monitoring mass spectrometry-based method for quantification of angiotensin peptides in HUVEC cultures., PeerJ, PMID 32983648
PXD020104 Dataset with its publication pending (from PRIDE)Dataset title: Generation and validation of recombinant antibodies to study tRNA synthetases in health and diseasePossible reference: Preger, C. et al. (2020) Generation and validation of recombinant antibodies to study human aminoacyl-tRNA synthetases., J Biol Chem, PMID 32817337
PXD020079 Dataset with its publication pending (from PRIDE)Dataset title: CIITA-transduced glioblastoma cells uncover a rich repertoire of clinically relevant tumor-associated HLA-II antigensPossible reference: Forlani, G. et al. (2021) CIITA-Transduced Glioblastoma Cells Uncover a Rich Repertoire of Clinically Relevant Tumor-Associated HLA-II Antigens., Mol Cell Proteomics, PMID 33592498
PXD020078 Dataset with its publication pending (from PRIDE)Dataset title: Urinary Glycoproteomic profiling of Non-Muscle Invasive and Muscle Invasive Bladder Carcinoma Patients reveals distinct N-glycosylation pattern of CD44, MGAM and GINM1Possible reference: Sathe, G. et al. (2020) Urinary glycoproteomic profiling of non-muscle invasive and muscle invasive bladder carcinoma patients reveals distinct N-glycosylation pattern of CD44, MGAM, and GINM1., Oncotarget, PMID 32922663
PXD020064 no publication (from MassIVE)Dataset title: Salinity-dependent proteome dynamics in Nile tilapia gillsPossible reference: Root, L. et al. (2021) Nonlinear effects of environmental salinity on the gill transcriptome versus proteome of Oreochromis niloticus modulate epithelial cell turnover., Genomics, PMID 34298068
PXD020056 no publication (from MassIVE)Dataset title: Salinity-dependent proteome dynamics in Nile tilapia kidneysPossible reference: Root, L. et al. (2021) A data-independent acquisition (DIA) assay library for quantitation of environmental effects on the kidney proteome of Oreochromis niloticus., Mol Ecol Resour, PMID 34101993
PXD020051 Dataset with its publication pending (from PRIDE)Dataset title: ERR agonism reverses mitochondrial dysfunction and inflammation in the aging kidneyPossible reference: Wang, XX. et al. (2023) Estrogen-Related Receptor Agonism Reverses Mitochondrial Dysfunction and Inflammation in the Aging Kidney., Am J Pathol, PMID 37717940
PXD020015 Dataset with its publication pending (from PanoramaPublic)Dataset title: S-Adenosylmethionine Depletion Activates La Ribonucleoprotein Domain
Family Member 1 to Induce Protein TranslationPossible reference: Ramani, K. et al. (2022) S-adenosylmethionine inhibits la ribonucleoprotein domain family member 1 in murine liver and human liver cancer cells., Hepatology, PMID 34449924
PXD020014 Dataset with its publication pending (from PRIDE)Dataset title: "In-gel cross-linking mass spectrometry (IGX-MS) of proteins and protein complexes"Possible reference: Hevler, JF. et al. (2021) Selective cross-linking of coinciding protein assemblies by in-gel cross-linking mass spectrometry., EMBO J, PMID 33459420
PXD020009 Dataset with its publication pending (from PRIDE)Dataset title: The previously uncharacterized HCMV protein pUL13 increases mitochondrial bioenergetics during infectionPossible reference: Betsinger, CN. et al. (2021) The human cytomegalovirus protein pUL13 targets mitochondrial cristae architecture to increase cellular respiration during infection., Proc Natl Acad Sci U S A, PMID 34344827
PXD019970 Dataset with its publication pending (from iProX)Dataset title: Tissue proteomics dataset of COVID-19 patientsPossible reference: Zhou, Y. et al. (2020) A network medicine approach to investigation and population-based validation of disease manifestations and drug repurposing for COVID-19., PLoS Biol, PMID 33156843
PXD019963 Dataset with its publication pending (from PRIDE)Dataset title: iTRAQ in proteomic analysis of potential biomarkers in invasive cancer, ductal carcinoma in situ, and mammary fibroadenomaPossible reference: Wu, H. et al. (2020) Isobaric Tags for Relative and Absolute Quantitation in Proteomic Analysis of Potential Biomarkers in Invasive Cancer, Ductal Carcinoma In Situ, and Mammary Fibroadenoma., Front Oncol, PMID 33194682
PXD019953 Dataset with its publication pending (from PRIDE)Dataset title: (p)ppGpp controls stringent factors by exploiting antagonistic allosteric coupling between catalytic domainsPossible reference: Roghanian, M. et al. (2021) (p)ppGpp controls stringent factors by exploiting antagonistic allosteric coupling between catalytic domains., Mol Cell, PMID 34416138
PXD019929 Dataset with its publication pending (from PRIDE)Dataset title: Mouse model of RDEB progressionPossible reference: Nyström, A. et al. (2015) Losartan ameliorates dystrophic epidermolysis bullosa and uncovers new disease mechanisms., EMBO Mol Med, PMID 26194911
PXD019920 Dataset with its publication pending (from PRIDE)Dataset title: Spatially-targeted proteomics of S. aureus abscess formationPossible reference: Ryan, DJ. et al. (2019) MicroLESA: Integrating Autofluorescence Microscopy, In Situ Micro-Digestions, and Liquid Extraction Surface Analysis for High Spatial Resolution Targeted Proteomic Studies., Anal Chem, PMID 31149808
PXD019915 Dataset with its publication pending (from jPOST)Dataset title: Aberrant splicing isoforms detected by full-length transcriptome sequencing as transcripts of potential neoantigens in non-small cell lung cancerPossible reference: Oka, M. et al. (2021) Aberrant splicing isoforms detected by full-length transcriptome sequencing as transcripts of potential neoantigens in non-small cell lung cancer., Genome Biol, PMID 33397462
PXD019914 no publication (from MassIVE)Dataset title: Glycoproteomic Characterization of Human High-Grade Serous Ovarian CancerPossible reference: Sheta, R. et al. (2016) A metabolic labeling approach for glycoproteomic analysis reveals altered glycoprotein expression upon GALNT3 knockdown in ovarian cancer cells., J Proteomics, PMID 27095597
PXD019901 Dataset with its publication pending (from PRIDE)Dataset title: Generation of SARS-CoV-2 S1 spike glycoprotein putative antigenic epitopes in vitro by intracellular aminopeptidasesPossible reference: Stamatakis, G. et al. (2020) Generation of SARS-CoV-2 S1 Spike Glycoprotein Putative Antigenic Epitopes in Vitro by Intracellular Aminopeptidases., J Proteome Res, PMID 32931291
PXD019900 Dataset with its publication pending (from PRIDE)Dataset title: Grad-seq shines light on unrecognized RNA and protein complexes in the model bacterium Escherichia coliPossible reference: Hör, J. et al. (2020) Grad-seq shines light on unrecognized RNA and protein complexes in the model bacterium Escherichia coli., Nucleic Acids Res, PMID 32813020
PXD019826 Dataset with its publication pending (from PRIDE)Dataset title: The mitochondrial transporter SFXN1 is critical for Complex III integrity and cellular metabolismPossible reference: Acoba, MG. et al. (2021) The mitochondrial carrier SFXN1 is critical for complex III integrity and cellular metabolism., Cell Rep, PMID 33730581
PXD019821 Dataset with its publication pending (from jPOST)Dataset title: A Marine Photosynthetic Microbial Cell Factory as a Platform for Spider Silk ProductionPossible reference: Foong, CP. et al. (2020) A marine photosynthetic microbial cell factory as a platform for spider silk production., Commun Biol, PMID 32641733
PXD019816 Dataset with its publication pending (from PRIDE)Dataset title: Engineering transplantable jejunal mucosal grafts using primary patient-derived organoids for children with intestinal failurePossible reference: Meran, L. et al. (2020) Engineering transplantable jejunal mucosal grafts using patient-derived organoids from children with intestinal failure., Nat Med, PMID 32895569
PXD019797 Dataset with its publication pending (from jPOST)Dataset title: A Data-independent Acquisition-based Global Phosphoproteomics System Enables Deep ProfilingPossible reference: Kitata, RB. et al. (2021) A data-independent acquisition-based global phosphoproteomics system enables deep profiling., Nat Commun, PMID 33953186
PXD019795 Dataset with its publication pending (from PRIDE)Dataset title: Ordered dephosphorylation initiated by the selective proteolysis of cyclin B drives mitotic exitPossible reference: Holder, J. et al. (2020) Ordered dephosphorylation initiated by the selective proteolysis of cyclin B drives mitotic exit., Elife, PMID 32869743
PXD019791 Dataset with its publication pending (from PRIDE)Dataset title: Ordered dephosphorylation initiated by the selective proteolysis of cyclin B drives mitotic exitPossible reference: Holder, J. et al. (2020) Ordered dephosphorylation initiated by the selective proteolysis of cyclin B drives mitotic exit., Elife, PMID 32869743
PXD019788 Dataset with its publication pending (from PRIDE)Dataset title: Ordered dephosphorylation initiated by the selective proteolysis of cyclin B drives mitotic exitPossible reference: Holder, J. et al. (2020) Ordered dephosphorylation initiated by the selective proteolysis of cyclin B drives mitotic exit., Elife, PMID 32869743
PXD019786 Dataset with its publication pending (from PRIDE)Dataset title: Ordered dephosphorylation initiated by the selective proteolysis of cyclin B drives mitotic exitPossible reference: Holder, J. et al. (2020) Ordered dephosphorylation initiated by the selective proteolysis of cyclin B drives mitotic exit., Elife, PMID 32869743
PXD019784 Dataset with its publication pending (from PRIDE)Dataset title: Hypoxis hemerocallidea (Afrtican potato) corm, leaf and flower transcriptomics and proteomicsPossible reference: Tomescu, MS. et al. (2021) Transcriptome and proteome of the corm, leaf and flower of Hypoxis hemerocallidea (African potato)., PLoS One, PMID 34283859
PXD019755 Dataset with its publication pending (from PRIDE)Dataset title: Lkb1 suppresses amino acid-driven gluconeogenesis in the liverPossible reference: Just, PA. et al. (2020) Lkb1 suppresses amino acid-driven gluconeogenesis in the liver., Nat Commun, PMID 33257663
PXD019734 Dataset with its publication pending (from iProX)Dataset title: Bis(zinc(II)-dipicolylamine) functionalized sub-2 μm core-shell microspheres for analysis of N-phosphoproteomePossible reference: Hu, Y. et al. (2020) Bis(zinc(II)-dipicolylamine)-functionalized sub-2 μm core-shell microspheres for the analysis of N-phosphoproteome., Nat Commun, PMID 33277485
PXD019725 Dataset with its publication pending (from PRIDE)Dataset title: Metabolic Changes Contribute to Melphalan Resistance in Multiple MyelomaPossible reference: Khin, ZP. et al. (2014) A preclinical assay for chemosensitivity in multiple myeloma., Cancer Res, PMID 24310398
PXD019704 Dataset with its publication pending (from PRIDE)Dataset title: Chaperone-mediated autophagy in the regulation of the circadian clockPossible reference: Juste, YR. et al. (2021) Reciprocal regulation of chaperone-mediated autophagy and the circadian clock., Nat Cell Biol, PMID 34876687
PXD019701 Dataset with its publication pending (from PRIDE)Dataset title: DIPG harbour alterations targetable by MEK inhibitors, with acquired resistance mechanisms overcome by combinatorial inhibitionPossible reference: Izquierdo, E. et al. (2022) DIPG Harbors Alterations Targetable by MEK Inhibitors, with Acquired Resistance Mechanisms Overcome by Combinatorial Inhibition., Cancer Discov, PMID 34737188
PXD019679 Dataset with its publication pending (from PRIDE)Dataset title: GHB analogs confer neuroprotection through specific interaction with the CaMKII hub domainPossible reference: Leurs, U. et al. (2021) GHB analogs confer neuroprotection through specific interaction with the CaMKIIα hub domain., Proc Natl Acad Sci U S A, PMID 34330837
PXD019674 Dataset with its publication pending (from PRIDE)Dataset title: Requirement of Nuclear Pore Complex subunits for transposon silencing in DrosophilaPossible reference: Munafò, M. et al. (2021) Channel nuclear pore complex subunits are required for transposon silencing in Drosophila., Elife, PMID 33856346
PXD019665 Dataset with its publication pending (from PRIDE)Dataset title: Characterization of the Novel Mitochondrial Genome Segregation Factor TAP110 in Trypanosoma bruceiPossible reference: Amodeo, S. et al. (2021) Characterization of the novel mitochondrial genome segregation factor TAP110 in Trypanosoma brucei., J Cell Sci, PMID 33589495
PXD019664 (from jPOST)Dataset title: Identification of Endogenous Kinase Substrates by Proximity Labeling Combined with Kinase Perturbation and Phosphorylation MotifsPossible reference: Niinae, T. et al. (2021) Identification of Endogenous Kinase Substrates by Proximity Labeling Combined with Kinase Perturbation and Phosphorylation Motifs., Mol Cell Proteomics, PMID 34186244
PXD019663 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic analysis of exudate of Cercospora armoraciae from Armoracia rusticanaPossible reference: Wang, H. et al. (2020) Proteomic analysis of exudate of Cercospora armoraciae from Armoracia rusticana., PeerJ, PMID 33005484
PXD019647 Dataset with its publication pending (from PRIDE)Dataset title: PP2A-Rts1 antagonizes Rck2-mediated hyperosmotic stress signaling in yeastPossible reference: Hollenstein, DM. et al. (2022) PP2ARts1 antagonizes Rck2-mediated hyperosmotic stress signaling in yeast., Microbiol Res, PMID 35461031
PXD019640 Dataset with its publication pending (from PRIDE)Dataset title: The pan-HER kinase inhibitor Neratinib modulates plant defense signaling by covalent targeting of an Arabidopsis epoxide hydrolasePossible reference: Ninck, S. et al. (2023) Chemoproteomics Reveals the Pan-HER Kinase Inhibitor Neratinib To Target an Arabidopsis Epoxide Hydrolase Related to Phytohormone Signaling., ACS Chem Biol, PMID 37115018
PXD019626 Dataset with its publication pending (from jPOST)Dataset title: Surfactant-assisted one-pot sample preparation for label-free single-cell proteomicsPossible reference: Tsai, CF. et al. (2021) Surfactant-assisted one-pot sample preparation for label-free single-cell proteomics., Commun Biol, PMID 33649493
PXD019618 no publication (from MassIVE)Dataset title: Quantitative Proteomics of human relevance of the dietary fiber-induced liver cancer murine modelPossible reference: Chandrashekar, DS. et al. (2020) Fermentable fiber-induced hepatocellular carcinoma in mice recapitulates gene signatures found in human liver cancer., PLoS One, PMID 32559205
PXD019600 Dataset with its publication pending (from PRIDE)Dataset title: Proteome landscape of epithelial to mesenchymal transition (EMT) of retinal pigment epithelium shares commonalities with malignancy-associated EMTPossible reference: Sripathi, SR. et al. (2021) Proteome Landscape of Epithelial-to-Mesenchymal Transition (EMT) of Retinal Pigment Epithelium Shares Commonalities With Malignancy-Associated EMT., Mol Cell Proteomics, PMID 34455105
PXD019585 Dataset with its publication pending (from PRIDE)Dataset title: Proteomics analysis with the Aurora-A PROTAC, JB170Possible reference: Gross, PH. et al. (2022) Accelerating PROTAC drug discovery: Establishing a relationship between ubiquitination and target protein degradation., Biochem Biophys Res Commun, PMID 36084553
PXD019572 Dataset with its publication pending (from PRIDE)Dataset title: Quantitative data-independent acquisition glycoproteomics of sparkling winePossible reference: Pegg, CL. et al. (2021) Quantitative Data-Independent Acquisition Glycoproteomics of Sparkling Wine., Mol Cell Proteomics, PMID 32938748
PXD019564 Dataset with its publication pending (from PRIDE)Dataset title: S-glutathionylation proteome profiling of Streptococcus mutansPossible reference: Li, Z. et al. (2020) S-glutathionylation proteome profiling reveals a crucial role of a thioredoxin-like protein in interspecies competition and cariogenecity of Streptococcus mutans., PLoS Pathog, PMID 32716974
PXD019556 Dataset with its publication pending (from PRIDE)Dataset title: iTRAQ-based quantitative proteomic analysis of heat stress-induced mechanisms in pepper seedlingsPossible reference: Wang, J. et al. (2021) iTRAQ-based quantitative proteomic analysis of heat stress-induced mechanisms in pepper seedlings., PeerJ, PMID 34141478
PXD019549 Dataset with its publication pending (from PRIDE)Dataset title: SWATH-MS based proteomic profiling of Pancreatic Ductal Adenocarcinoma tumours reveals the interplay between the extracellular matrix and related intracellular pathwaysPossible reference: Nweke, EE. et al. (2020) SWATH-MS based proteomic profiling of pancreatic ductal adenocarcinoma tumours reveals the interplay between the extracellular matrix and related intracellular pathways., PLoS One, PMID 33048956
PXD019515 Dataset with its publication pending (from PRIDE)Dataset title: FAIMS single cellUltrasensitive single-cell proteomics workflow identifies >1000 protein groups per mammalian cellPossible reference: Cong, Y. et al. (2020) Ultrasensitive single-cell proteomics workflow identifies >1000 protein groups per mammalian cell., Chem Sci, PMID 34163866
PXD019499 Dataset with its publication pending (from PRIDE)Dataset title: CRYPTOCHROMES promote daily proteome homeostasisPossible reference: Wong, DCS. et al. (2022) CRYPTOCHROMES promote daily protein homeostasis., EMBO J, PMID 34842284
PXD019497 Dataset with its publication pending (from jPOST)Dataset title: Improved host cell protein analysis in monoclonal antibody products through ProteoMiner Possible reference: Chen, IH. et al. (2020) Improved host cell protein analysis in monoclonal antibody products through ProteoMiner., Anal Biochem, PMID 32979367
PXD019488 Dataset with its publication pending (from PRIDE)Dataset title: Identification of TbUnc119-interacting proteins by proximity-based biotinylationPossible reference: Mehus, AA. et al. (2016) BioID Identification of Lamin-Associated Proteins., Methods Enzymol, PMID 26778550
PXD019486 Dataset with its publication pending (from PRIDE)Dataset title: Long noncoding RNA (lncRNA), smORF encoded polypeptides (SEPs), NONCODE database, enrichment, mass spectrometryPossible reference: Zhang, Q. et al. (2021) Deeply Mining a Universe of Peptides Encoded by Long Noncoding RNAs., Mol Cell Proteomics, PMID 34129944
PXD019484 Dataset with its publication pending (from PRIDE)Dataset title: Mitochondrial protein interaction landscape of SS-31Possible reference: Chavez, JD. et al. (2020) Mitochondrial protein interaction landscape of SS-31., Proc Natl Acad Sci U S A, PMID 32554501
PXD019482 Dataset with its publication pending (from iProX)Dataset title: Proteomic analysis of blood serum and lung about pulmonary hypertension with old anterior myocardial infarctionPossible reference: Wu, X. et al. (2020) Serum biomarker analysis at the protein level on pulmonary hypertension secondary to old anterior myocardial infarction., Pulm Circ, PMID 33282196
PXD019469 Dataset with its publication pending (from PRIDE)Dataset title: A head and neck cancer protein interaction map reveals PIK3CA mutant drug sensitivityPossible reference: Swaney, DL. et al. (2021) A protein network map of head and neck cancer reveals PIK3CA mutant drug sensitivity., Science, PMID 34591642
PXD019465 Dataset with its publication pending (from PRIDE)Dataset title: ZAP-70 promotes microenvironment interactions and increases protein-translation in chronic lymphocytic leukemiaPossible reference: Chen, J. et al. (2021) ZAP-70 constitutively regulates gene expression and protein synthesis in chronic lymphocytic leukemia., Blood, PMID 33619528
PXD019463 Dataset with its publication pending (from PRIDE)Dataset title: Bacterial response to glyphosate-based herbicide Roundup stressPossible reference: Pöppe, J. et al. (2020) Selection for Resistance to a Glyphosate-Containing Herbicide in Salmonella enterica Does Not Result in a Sustained Activation of the Tolerance Response or Increased Cross-Tolerance and Cross-Resistance to Clinically Important Antibiotics., Appl Environ Microbiol, PMID 33008821
PXD019455 no publication (from MassIVE)Dataset title: Hepatitis C virus NS3-4A protease regulates the lipid environment for RNA replication by cleaving host enzyme 24-dehydrocholesterol reductasePossible reference: Tallorin, L. et al. (2020) Hepatitis C virus NS3-4A protease regulates the lipid environment for RNA replication by cleaving host enzyme 24-dehydrocholesterol reductase., J Biol Chem, PMID 32641492
PXD019432 no publication (from MassIVE)Dataset title: Membrane-Based Affinity Purification to Identify Target Proteins of a Small-Molecule DrugPossible reference: Yang, L. et al. (2020) Membrane-Based Affinity Purification to Identify Target Proteins of a Small-Molecule Drug., Anal Chem, PMID 32867494
PXD019419 no publication (from MassIVE)Dataset title: Proteomic Analysis of the Air-way Fluid in Lung Cancer. Detection of Periostin in Bronchoalveolar Lavage (BAL).Possible reference: Zhou, Y. et al. (2020) Proteomic Analysis of the Air-Way Fluid in Lung Cancer. Detection of Periostin in Bronchoalveolar Lavage (BAL)., Front Oncol, PMID 32719746
PXD019413 Dataset with its publication pending (from PRIDE)Dataset title: Progressive proteome changes in the myocardium of a pig model for Duchenne muscular dystrophyPossible reference: Tamiyakul, H. et al. (2020) Progressive Proteome Changes in the Myocardium of a Pig Model for Duchenne Muscular Dystrophy., iScience, PMID 32927262
PXD019387 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic Profiling of Serum Exosomes from Patients with Metastatic Gastric CancerPossible reference: Ding, XQ. et al. (2020) Proteomic Profiling of Serum Exosomes From Patients With Metastatic Gastric Cancer., Front Oncol, PMID 32754443
PXD019371 Dataset with its publication pending (from PRIDE)Dataset title: The iron-regulated surface determinant B (IsdB) protein from Staphylococcus aureus acts as a vitronectin receptorPossible reference: Pietrocola, G. et al. (2020) The iron-regulated surface determinant B (IsdB) protein from Staphylococcus aureus acts as a receptor for the host protein vitronectin., J Biol Chem, PMID 32499371
PXD019362 Dataset with its publication pending (from PRIDE)Dataset title: Towards understandingTissue MÏ• heterogeneity and functions using quantitative proteomicsPossible reference: Ruprecht, B. et al. (2017) Lapatinib Resistance in Breast Cancer Cells Is Accompanied by Phosphorylation-Mediated Reprogramming of Glycolysis., Cancer Res, PMID 28209619
PXD019358 Dataset with its publication pending (from PRIDE)Dataset title: Global Proteomic Analysis of Lysine crotonylation in The Plant Pathogen Botrytis cinereaPossible reference: Zhang, N. et al. (2020) Global Proteomic Analysis of Lysine Crotonylation in the Plant Pathogen Botrytis cinerea., Front Microbiol, PMID 33193151
PXD019348 Dataset with its publication pending (from PRIDE)Dataset title: Proteome-Wide Effects of Naphthalene-Derived Secondary Organic Aerosol in BEAS-2B Cells Are Caused by Short-Lived Unsaturated CarbonylsPossible reference: Han, J. et al. (2020) Proteome-wide effects of naphthalene-derived secondary organic aerosol in BEAS-2B cells are caused by short-lived unsaturated carbonyls., Proc Natl Acad Sci U S A, PMID 32989125
PXD019345 Dataset with its publication pending (from PRIDE)Dataset title: MPP8 is essential for sustaining self-renewal of ground-state pluripotent stem cellsPossible reference: Müller, I. et al. (2021) MPP8 is essential for sustaining self-renewal of ground-state pluripotent stem cells., Nat Commun, PMID 34031396
PXD019305 Dataset with its publication pending (from PRIDE)Dataset title: Xylose Metabolism and the Effect of Oxidative Stress on Lipid and Carotenoid Production in Rhodotorula toruloides: Insights for Future BiorefineryPossible reference: Pinheiro, MJ. et al. (2020) Xylose Metabolism and the Effect of Oxidative Stress on Lipid and Carotenoid Production in Rhodotorula toruloides: Insights for Future Biorefinery., Front Bioeng Biotechnol, PMID 32974324
PXD019293 Dataset with its publication pending (from PRIDE)Dataset title: Caspofungin induced cell wall changes of Candida species influences macrophage interactionsPossible reference: Walker, LA. et al. (2020) Caspofungin Induced Cell Wall Changes of Candida Species Influences Macrophage Interactions., Front Cell Infect Microbiol, PMID 32528900
PXD019288 Dataset with its publication pending (from PRIDE)Dataset title: COPPER INDUCES PROTEIN AGGREGATION, A TOXIC PROCESS COMPENSATED BY MOLECULAR CHAPERONES.Possible reference: Zuily, L. et al. (2022) Copper Induces Protein Aggregation, a Toxic Process Compensated by Molecular Chaperones., mBio, PMID 35289645
PXD019285 Dataset with its publication pending (from PRIDE)Dataset title: Interferon-induced degradation of the hepatitis B virus persistence form, cccDNA, depends on ISG20Possible reference: Stadler, D. et al. (2021) Interferon-induced degradation of the persistent hepatitis B virus cccDNA form depends on ISG20., EMBO Rep, PMID 33969602
PXD019282 Dataset with its publication pending (from iProX)Dataset title: N-glycosites and O-glycosites on Spike glycoprotein of SARS-CoV-2Possible reference: Bagdonaite, I. et al. (2021) Site-Specific O-Glycosylation Analysis of SARS-CoV-2 Spike Protein Produced in Insect and Human Cells., Viruses, PMID 33806155
PXD019280 no publication (from MassIVE)Dataset title: Precise temporal regulation of post-transcriptional repressors is required for an orderly Drosophila maternal-to-zygotic transitionPossible reference: Cao, WX. et al. (2020) Precise Temporal Regulation of Post-transcriptional Repressors Is Required for an Orderly Drosophila Maternal-to-Zygotic Transition., Cell Rep, PMID 32579915
PXD019273 Dataset with its publication pending (from PRIDE)Dataset title: Posttranslational modification of the RHO of plants protein RACB by phosphorylation and cross-kingdom conserved ubiquitinationPossible reference: Weiß, L. et al. (2022) Posttranslational modification of the RHO of plants protein RACB by phosphorylation and cross-kingdom conserved ubiquitination., PLoS One, PMID 35333858
PXD019260 Dataset with its publication pending (from PRIDE)Dataset title: Cholesterol sensing by CD81 is important for hepatitis C virus entryPossible reference: Palor, M. et al. (2020) Cholesterol sensing by CD81 is important for hepatitis C virus entry., J Biol Chem, PMID 32900848
PXD019255 Dataset with its publication pending (from PRIDE)Dataset title: Uncovering tumor-stroma inter-relationships using quantitative MALDI-Mass spectrometry imagingPossible reference: Boyle, ST. et al. (2020) Uncovering Tumor-Stroma Inter-relationships Using MALDI Mass Spectrometry Imaging., J Proteome Res, PMID 32870688
PXD019246 no publication (from MassIVE)Dataset title: Oligodendrocyte-derived extracellular vesicles as antigen-specific therapy for autoimmune neuroinflammationPossible reference: Casella, G. et al. (2020) Oligodendrocyte-derived extracellular vesicles as antigen-specific therapy for autoimmune neuroinflammation in mice., Sci Transl Med, PMID 33148622
PXD019239 Dataset with its publication pending (from PRIDE)Dataset title: STING mediates lupus via the activation of conventional dendritic cell maturation and plasmacytoid dendritic cell differentiationPossible reference: Thim-Uam, A. et al. (2020) STING Mediates Lupus via the Activation of Conventional Dendritic Cell Maturation and Plasmacytoid Dendritic Cell Differentiation., iScience, PMID 33083760
PXD019230 no publication (from MassIVE)Dataset title: EDF1 coordinates cellular responses to ribosome collisionsPossible reference: Sinha, NK. et al. (2020) EDF1 coordinates cellular responses to ribosome collisions., Elife, PMID 32744497
PXD019229 no publication (from MassIVE)Dataset title: EDF1 coordinates cellular responses to ribosome collisionsPossible reference: Sinha, NK. et al. (2020) EDF1 coordinates cellular responses to ribosome collisions., Elife, PMID 32744497
PXD019228 no publication (from MassIVE)Dataset title: EDF1 coordinates cellular responses to ribosome collisionsPossible reference: Sinha, NK. et al. (2020) EDF1 coordinates cellular responses to ribosome collisions., Elife, PMID 32744497
PXD019227 no publication (from MassIVE)Dataset title: EDF1 coordinates cellular responses to ribosome collisionsPossible reference: Sinha, NK. et al. (2020) EDF1 coordinates cellular responses to ribosome collisions., Elife, PMID 32744497
PXD019226 no publication (from MassIVE)Dataset title: EDF1 coordinates cellular responses to ribosome collisionsPossible reference: Sinha, NK. et al. (2020) EDF1 coordinates cellular responses to ribosome collisions., Elife, PMID 32744497
PXD019225 no publication (from MassIVE)Dataset title: EDF1 coordinates cellular responses to ribosome collisionsPossible reference: Sinha, NK. et al. (2020) EDF1 coordinates cellular responses to ribosome collisions., Elife, PMID 32744497
PXD019224 no publication (from MassIVE)Dataset title: EDF1 coordinates cellular responses to ribosome collisionsPossible reference: Sinha, NK. et al. (2020) EDF1 coordinates cellular responses to ribosome collisions., Elife, PMID 32744497
PXD019213 no publication (from MassIVE)Dataset title: Perturbations of hepatic proteome behind the onset of metabolic disorders in mouse offspring developed following assisted reproductive technologiesPossible reference: Zacchini, F. et al. (2021) Perturbations of the hepatic proteome behind the onset of metabolic disorders in mouse offspring developed following embryo manipulation., Theriogenology, PMID 34052779
PXD019199 Dataset with its publication pending (from PRIDE)Dataset title: Mapping the CCL8:P672 interface using HDX-MSPossible reference: Darlot, B. et al. (2020) Engineered anti-inflammatory peptides inspired by mapping an evasin-chemokine interaction., J Biol Chem, PMID 32471866
PXD019186 Dataset with its publication pending (from PRIDE)Dataset title: Adipocytes disrupt the translational programme of Acute Lymphoblastic Leukaemia to favour tumour survival and persistencePossible reference: Heydt, Q. et al. (2021) Adipocytes disrupt the translational programme of acute lymphoblastic leukaemia to favour tumour survival and persistence., Nat Commun, PMID 34535653
PXD019159 Dataset with its publication pending (from PRIDE)Dataset title: Protein composition of the subretinal fluid suggest selective diffusion of vitreous proteins in retinal detachmentPossible reference: Poulsen, ET. et al. (2020) Protein Composition of the Subretinal Fluid Suggests Selective Diffusion of Vitreous Proteins in Retinal Detachment., Transl Vis Sci Technol, PMID 33117608
PXD019149 Dataset with its publication pending (from PRIDE)Dataset title: Extensive transfer of genes for edible seaweed digestion from marine to human gut bacteriaPossible reference: Pudlo, NA. et al. (2022) Diverse events have transferred genes for edible seaweed digestion from marine to human gut bacteria., Cell Host Microbe, PMID 35240043
PXD019141 Dataset with its publication pending (from PRIDE)Dataset title: Stress-induced translation inhibition through displacement of scanning initiation factorsPossible reference: Bresson, S. et al. (2020) Stress-Induced Translation Inhibition through Rapid Displacement of Scanning Initiation Factors., Mol Cell, PMID 33053322
PXD019132 no publication (from MassIVE)Dataset title: A carotenoid-deficient mutant of the plant-associated microbe Pantoea sp. YR343 displays an altered membrane proteomePossible reference: Vijaya Kumar, S. et al. (2020) A carotenoid-deficient mutant of the plant-associated microbe Pantoea sp. YR343 displays an altered membrane proteome., Sci Rep, PMID 32917935
PXD019127 Dataset with its publication pending (from PRIDE)Dataset title: PhosR enables processing and functional analysis of phosphoproteomic dataPossible reference: Kim, HJ. et al. (2021) PhosR enables processing and functional analysis of phosphoproteomic data., Cell Rep, PMID 33626354
PXD019125 Dataset with its publication pending (from PRIDE)Dataset title: Black soldier fly as protein source for salmonPossible reference: Li, Y. et al. (2019) Gut health and vaccination response in pre-smolt Atlantic salmon (Salmo salar) fed black soldier fly (Hermetia illucens) larvae meal., Fish Shellfish Immunol, PMID 30590165
PXD019102 Dataset with its publication pending (from PRIDE)Dataset title: Screen Identifies DYRK1B Network as Mediator of Transcription Repression on Damaged ChromatinPossible reference: Dong, C. et al. (2020) Screen identifies DYRK1B network as mediator of transcription repression on damaged chromatin., Proc Natl Acad Sci U S A, PMID 32611815
PXD019098 Dataset with its publication pending (from PRIDE)Dataset title: A systems approach delivers a functional 1 microRNA catalog and expanded targets for seizure suppression in temporal lobe epilepsyPossible reference: Venø, MT. et al. (2020) A systems approach delivers a functional microRNA catalog and expanded targets for seizure suppression in temporal lobe epilepsy., Proc Natl Acad Sci U S A, PMID 32581127
PXD019093 Dataset with its publication pending (from PRIDE)Dataset title: Human DICER helicase domain recruits PKR and dsRNA binding proteins during viral infectionPossible reference: Montavon, TC. et al. (2021) Human DICER helicase domain recruits PKR and modulates its antiviral activity., PLoS Pathog, PMID 33984068
PXD019054 Dataset with its publication pending (from PRIDE)Dataset title: Early cleavage of preimplantation embryos is regulated by tRNAGln-TTG-derived small RNAs present in mature spermatozoaPossible reference: Chen, X. et al. (2020) Early cleavage of preimplantation embryos is regulated by tRNAGln-TTG-derived small RNAs present in mature spermatozoa., J Biol Chem, PMID 32487749
PXD019045 Dataset with its publication pending (from PRIDE)Dataset title: Human HCC sample, phosphosites occupancyPossible reference: Wang, Y. et al. (2020) A New Workflow for the Analysis of Phosphosite Occupancy in Paired Samples by Integration of Proteomics and Phosphoproteomics Data Sets., J Proteome Res, PMID 32786891
PXD019034 Dataset with its publication pending (from PRIDE)Dataset title: Assembly defects of the human tRNA splicing endonuclease contribute to impaired pre-tRNA processing in pontocerebellar hypoplasiaPossible reference: Sekulovski, S. et al. (2021) Assembly defects of human tRNA splicing endonuclease contribute to impaired pre-tRNA processing in pontocerebellar hypoplasia., Nat Commun, PMID 34584079
PXD019032 Dataset with its publication pending (from PRIDE)Dataset title: A Cytoskeletal Protein Complex is Essential for Division of Intracellular Amastigotes of Leishmania mexicana (LAND-483 and LAND-536)Possible reference: Kelly, FD. et al. (2020) A cytoskeletal protein complex is essential for division of intracellular amastigotes of Leishmania mexicana., J Biol Chem, PMID 32719012
PXD019031 Dataset with its publication pending (from PRIDE)Dataset title: A Cytoskeletal Protein Complex is Essential for Division of Intracellular Amastigotes of Leishmania mexicana (LAN1416)Possible reference: Kelly, FD. et al. (2020) A cytoskeletal protein complex is essential for division of intracellular amastigotes of Leishmania mexicana., J Biol Chem, PMID 32719012
PXD019030 Dataset with its publication pending (from PRIDE)Dataset title: Dietary intervention improves health metrics and life expectancy of the genetically obese Titan mousePossible reference: Müller-Eigner, A. et al. (2022) Dietary intervention improves health metrics and life expectancy of the genetically obese Titan mouse., Commun Biol, PMID 35505192
PXD019020 Dataset with its publication pending (from PRIDE)Dataset title: Systematic analysis of IL-17 receptor signalosome reveals a robust regulatory feedback loopPossible reference: Draberova, H. et al. (2020) Systematic analysis of the IL-17 receptor signalosome reveals a robust regulatory feedback loop., EMBO J, PMID 32696476
PXD019013 Dataset with its publication pending (from iProX)Dataset title: iTRAQ proteomic analysis of I. multifiliisPossible reference: Yao, JY. et al. (2017) Proteomic analysis of differentially expressed proteins in the two developmental stages of Ichthyophthirius multifiliis., Parasitol Res, PMID 27864673
PXD019012 Dataset with its publication pending (from PRIDE)Dataset title: Genome-wide effects of the antimicrobial peptide apidaecin on translation terminationPossible reference: Mangano, K. et al. (2020) Genome-wide effects of the antimicrobial peptide apidaecin on translation termination in bacteria., Elife, PMID 33031031
PXD018998 no publication (from MassIVE)Dataset title: Enabling Routine MHC-II Associated Peptide ProteomicS (MAPPs) for Risk Assessment of Drug-Induced ImmunogenicityPossible reference: Steiner, G. et al. (2020) Enabling Routine MHC-II-Associated Peptide Proteomics for Risk Assessment of Drug-Induced Immunogenicity., J Proteome Res, PMID 32786679
PXD018995 Dataset with its publication pending (from PRIDE)Dataset title: SIRT3 interactions and mitochondrial proteome during HCMV infectionPossible reference: Sheng, X. et al. (2021) The antiviral sirtuin 3 bridges protein acetylation to mitochondrial integrity and metabolism during human cytomegalovirus infection., PLoS Pathog, PMID 33857259
PXD018987 Dataset with its publication pending (from PRIDE)Dataset title: Arabidopsis mTERF9 protein promotes chloroplast ribosomal assembly and translation by establishing ribonucleoprotein interactions in vivoPossible reference: Méteignier, LV. et al. (2021) Arabidopsis mTERF9 protein promotes chloroplast ribosomal assembly and translation by establishing ribonucleoprotein interactions in vivo., Nucleic Acids Res, PMID 33398331
PXD018986 no publication (from MassIVE)Dataset title: The effect of pathogen inactivation on cryoprecipitate: A functional and quantitative evaluationPossible reference: Kamyszek, RW. et al. (2020) The effect of pathogen inactivation on cryoprecipitate: a functional and quantitative evaluation., Blood Transfus, PMID 33000752
PXD018981 Dataset with its publication pending (from PRIDE)Dataset title: Structure of the full kinetoplastids mitoribosome and insight on its large subunit maturationPossible reference: Soufari, H. et al. (2020) Structure of the mature kinetoplastids mitoribosome and insights into its large subunit biogenesis., Proc Natl Acad Sci U S A, PMID 33168716
PXD018970 Dataset with its publication pending (from iProX)Dataset title: Urine proteomics profiling of the COVID-19Possible reference: Li, Y. et al. (2020) Urine proteome of COVID-19 patients., Urine (Amst), PMID 33688631
PXD018967 Dataset with its publication pending (from PRIDE)Dataset title: CreA phosphorylation sites are important for the regulation of carbon catabolite repression in filamentous fungiPossible reference: de Assis, LJ. et al. (2021) Carbon Catabolite Repression in Filamentous Fungi Is Regulated by Phosphorylation of the Transcription Factor CreA., mBio, PMID 33402538
PXD018964 Dataset with its publication pending (from PRIDE)Dataset title: Integrated analysis of sialotranscriptome and sialoproteome of the brown dog tick Rhipicephalus sanguineus (s.l.): insights into gene expression during blood feedingPossible reference: Tirloni, L. et al. (2020) Integrated analysis of sialotranscriptome and sialoproteome of the brown dog tick Rhipicephalus sanguineus (s.l.): Insights into gene expression during blood feeding., J Proteomics, PMID 32673754
PXD018959 Dataset with its publication pending (from jPOST)Dataset title: A mass spectrometry-based antibody free approach enables the quantification of D-dimer in plasmaPossible reference: Zhang, N. et al. (2020) A Mass-Spectrometry-Based Antibody-Free Approach Enables the Quantification of D-Dimer in Plasma., J Proteome Res, PMID 32519545
PXD018958 no publication (from MassIVE)Dataset title: Blood circulation of soft nanomaterials is governed by dynamic remodeling of protein opsonins at nanobiointerfacePossible reference: Abbina, S. et al. (2020) Blood circulation of soft nanomaterials is governed by dynamic remodeling of protein opsonins at nano-biointerface., Nat Commun, PMID 32546688
PXD018953 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic analyses of the early stage of interaction between Caballeronia mineralivorans PML1(12) and mineralPossible reference: Uroz, S. et al. (2020) Dual transcriptomics and proteomics analyses of the early stage of interaction between Caballeronia mineralivorans PML1(12) and mineral., Environ Microbiol, PMID 32656915
PXD018951 Dataset with its publication pending (from PRIDE)Dataset title: Dental Pulp Stem Cells LC-MS/MS analysisPossible reference: Kumar, A. et al. (2017) Molecular spectrum of secretome regulates the relative hepatogenic potential of mesenchymal stem cells from bone marrow and dental tissue., Sci Rep, PMID 29118330
PXD018947 Dataset with its publication pending (from PRIDE)Dataset title: Role of Coronin 1B in endothelial cellsPossible reference: Usatyuk, PV. et al. (2013) Coronin 1B regulates S1P-induced human lung endothelial cell chemotaxis: role of PLD2, protein kinase C and Rac1 signal transduction., PLoS One, PMID 23667561
PXD018943 Dataset with its publication pending (from PRIDE)Dataset title: Chromosome-level de novo assembly and annotation of pig-tailed (macaca nemestrina) macaque genomePossible reference: Roodgar, M. et al. (2020) Chromosome-level de novo assembly of the pig-tailed macaque genome using linked-read sequencing and HiC proximity scaffolding., Gigascience, PMID 32649757
PXD018933 Dataset with its publication pending (from PRIDE)Dataset title: Protein sequence comparison of human and non-human primate tooth proteomesPossible reference: Froment, C. et al. (2021) Protein sequence comparison of human and non-human primate tooth proteomes., J Proteomics, PMID 33189847
PXD018915 Dataset with its publication pending (from PRIDE)Dataset title: Heat-induced proteomes in tomato pollen mother cellsPossible reference: Thapa, P. et al. (2025) Cell-Type-Specific Heat-Induced Changes in the Proteomes of Pollen Mother Cells and Microspores Provide New Insights into Tomato Pollen Production Under Elevated Temperature., Proteomes, PMID 40265418
PXD018910 Dataset with its publication pending (from PRIDE)Dataset title: Structure of the helicase core of Werner Helicase, a key target in microsatellite instability cancersPossible reference: Newman, JA. et al. (2021) Structure of the helicase core of Werner helicase, a key target in microsatellite instability cancers., Life Sci Alliance, PMID 33199508
PXD018905 Dataset with its publication pending (from PRIDE)Dataset title: Accurate Prediction of Kinase-Substrate Networks Using Knowledge GraphsPossible reference: NováÄek, V. et al. (2020) Accurate prediction of kinase-substrate networks using knowledge graphs., PLoS Comput Biol, PMID 33270624
PXD018894 Dataset with its publication pending (from PRIDE)Dataset title: CALCOCO1 acts with VAMP-Associated Proteins to mediate ER-phagyPossible reference: Nthiga, TM. et al. (2020) CALCOCO1 acts with VAMP-associated proteins to mediate ER-phagy., EMBO J, PMID 32525583
PXD018873 Dataset with its publication pending (from PRIDE)Dataset title: eEF2K activity determines synergy to PI3K and MEK inhibitors in combination in cancer cellsPossible reference: Hijazi, M. et al. (2022) eEF2K Activity Determines Synergy to Cotreatment of Cancer Cells With PI3K and MEK Inhibitors., Mol Cell Proteomics, PMID 35513296
PXD018865 Dataset with its publication pending (from PRIDE)Dataset title: Mouse Muscle Stem Cell Proteome during Activation and CPEB1 Dependent Proteome in Mouse Muscle Stem CellPossible reference: Zeng, W. et al. (2022) CPEB1 directs muscle stem cell activation by reprogramming the translational landscape., Nat Commun, PMID 35177647
PXD018854 Dataset with its publication pending (from PRIDE)Dataset title: Comparison of protein and peptide fractionation approaches in protein identification and quantification from Saccharomyces cerevisiaePossible reference: Deng, L. et al. (2021) Comparison of protein and peptide fractionation approaches in protein identification and quantification from Saccharomyces cerevisiae., J Chromatogr B Analyt Technol Biomed Life Sci, PMID 33279813
PXD018848 Dataset with its publication pending (from PRIDE)Dataset title: Systematic Analysis of the Lysine Crotonylome and multiple PTM analysis (acetylation, succinylation and crotonylation) in Candida albicansPossible reference: Zhou, X. et al. (2021) Systematic Analysis of the Lysine Crotonylome and Multiple Posttranslational Modification Analysis (Acetylation, Succinylation, and Crotonylation) in Candida albicans., mSystems, PMID 33500332
PXD018812 Dataset with its publication pending (from PRIDE)Dataset title: A cell competition-based drug screen identifies a novel compound that induces dual c-Myc degradation and p53 activationPossible reference: Tadele, DS. et al. (2021) A cell competition-based small molecule screen identifies a novel compound that induces dual c-Myc depletion and p53 activation., J Biol Chem, PMID 33303632
PXD018797 Dataset with its publication pending (from iProX)Dataset title: Signaling and Metabolic Pathways and Risk Scores of Protein Biomarkers in Pulmonary Arterial Hypertension - Integrated Multi-Omics StudiesPossible reference: Kheyfets, VO. et al. (2024) Identification of candidate biomarkers and molecular networks associated with Pulmonary Arterial Hypertension using machine learning and plasma multi-Omics analysis., medRxiv, PMID 39763543
PXD018785 Dataset with its publication pending (from PRIDE)Dataset title: Modelling Plasticity and Dysplasia of Pancreatic Ductal Organoids Derived from Human Pluripotent Stem CellsPossible reference: Breunig, M. et al. (2021) Modeling plasticity and dysplasia of pancreatic ductal organoids derived from human pluripotent stem cells., Cell Stem Cell, PMID 33915078
PXD018781 Dataset with its publication pending (from PRIDE)Dataset title: Divergent features of the coenzyme Q:cytochrome c oxidoreductase complex in Toxoplasma gondii parasitesPossible reference: Hayward, JA. et al. (2021) Divergent features of the coenzyme Q:cytochrome c oxidoreductase complex in Toxoplasma gondii parasites., PLoS Pathog, PMID 33524071
PXD018759 no publication (from MassIVE)Dataset title: Partial catalytic Cys oxidation of human GAPDH purified from human epithelial kidney cellsPossible reference: Lia, A. et al. (2020) Partial catalytic Cys oxidation of human GAPDH to Cys-sulfonic acid., Wellcome Open Res, PMID 32802964
PXD018754 Dataset with its publication pending (from PRIDE)Dataset title: A global data-driven census of Salmonella small proteins and their potential functions in bacterial virulencePossible reference: Venturini, E. et al. (2020) A global data-driven census of Salmonella small proteins and their potential functions in bacterial virulence., Microlife, PMID 37223003
PXD018690 Dataset with its publication pending (from PRIDE)Dataset title: Comprehensive nucleosome interactome screen establishes fundamental principles of nucleosome bindingPossible reference: Skrajna, A. et al. (2020) Comprehensive nucleosome interactome screen establishes fundamental principles of nucleosome binding., Nucleic Acids Res, PMID 32658293
PXD018682 Dataset with its publication pending (from PRIDE)Dataset title: MS analysis of SARS-CoV2 proteins from patient samplesPossible reference: Iles, RK. et al. (2022) Direct Detection of Glycated Human Serum Albumin and Hyperglycosylated IgG3 in Serum, by MALDI-ToF Mass Spectrometry, as a Predictor of COVID-19 Severity., Diagnostics (Basel), PMID 36292212
PXD018676 no publication (from MassIVE)Dataset title: TBL1XR1 MUTATIONS DRIVE EXTRANODAL LYMPHOMA BY INDUCING A PRO-TUMORIGENIC MEMORY FATEPossible reference: Venturutti, L. et al. (2020) TBL1XR1 Mutations Drive Extranodal Lymphoma by Inducing a Pro-tumorigenic Memory Fate., Cell, PMID 32619424
PXD018662 Dataset with its publication pending (from PRIDE)Dataset title: USP9X controls the resolution of stalled ribosomesPossible reference: Clancy, A. et al. (2021) The deubiquitylase USP9X controls ribosomal stalling., J Cell Biol, PMID 33507233
PXD018638 Dataset with its publication pending (from PRIDE)Dataset title: AIM2 in regulatory T (Treg) cells restrains autoimmune diseasesPossible reference: Chou, WC. et al. (2021) AIM2 in regulatory T cells restrains autoimmune diseases., Nature, PMID 33505023
PXD018618 no publication (from MassIVE)Dataset title: Functional proteome analysis of placenta membrane associated with preterm birthPossible reference: Parry, S. et al. (2014) Maternal serum serpin B7 is associated with early spontaneous preterm birth., Am J Obstet Gynecol, PMID 24954659
PXD018605 no publication (from MassIVE)Dataset title: Proteomic and transcriptomic patterns during lipid accumulation in the microalga Nannochloropsis gaditanaPossible reference: Hulatt, CJ. et al. (2020) Proteomic and Transcriptomic Patterns during Lipid Remodeling in Nannochloropsis gaditana., Int J Mol Sci, PMID 32971781
PXD018600 Dataset with its publication pending (from PRIDE)Dataset title: A Structure-Based Mechanism for DNA Entry into the Cohesin RingPossible reference: Higashi, TL. et al. (2020) A Structure-Based Mechanism for DNA Entry into the Cohesin Ring., Mol Cell, PMID 32755595
PXD018587 Dataset with its publication pending (from PRIDE)Dataset title: Open database searching enables the identification and comparison of glycoproteomes without defining glycan compositions prior to searchingPossible reference: Ahmad Izaham, AR. et al. (2020) Open Database Searching Enables the Identification and Comparison of Bacterial Glycoproteomes without Defining Glycan Compositions Prior to Searching., Mol Cell Proteomics, PMID 32576591
PXD018582 no publication (from MassIVE)Dataset title: AXL CONFERS CELL MIGRATION AND INVASION BY HIJACKING A PEAK1-REGULATED FOCAL ADHESION PROTEIN NETWORKPossible reference: Abu-Thuraia, A. et al. (2020) AXL confers cell migration and invasion by hijacking a PEAK1-regulated focal adhesion protein network., Nat Commun, PMID 32681075
PXD018580 Dataset with its publication pending (from PRIDE)Dataset title: Tranylcypromine specificity for monoamine oxidase is limited by promiscuous protein labelling and lysosomal trappingPossible reference: Drechsel, J. et al. (2020) Tranylcypromine specificity for monoamine oxidase is limited by promiscuous protein labelling and lysosomal trapping., RSC Chem Biol, PMID 34458760
PXD018566 Dataset with its publication pending (from PRIDE)Dataset title: Rewiring of B cell receptor signaling by Epstein-Barr virus LMP2APossible reference: Fish, K. et al. (2020) Rewiring of B cell receptor signaling by Epstein-Barr virus LMP2A., Proc Natl Acad Sci U S A, PMID 33020271
PXD018558 Dataset with its publication pending (from PRIDE)Dataset title: Dual element (C/Cl) isotope analysis indicates distinct mechanisms of reductive dehalogenation of chlorinated ethenes and dichloroethane in Dehalococcoides mccartyi strain BTF08 with defined reductive dehalogenase inventoriesPossible reference: Franke, S. et al. (2020) Dual Element (C/Cl) Isotope Analysis Indicates Distinct Mechanisms of Reductive Dehalogenation of Chlorinated Ethenes and Dichloroethane in Dehalococcoides mccartyi Strain BTF08 With Defined Reductive Dehalogenase Inventories., Front Microbiol, PMID 32903289
PXD018537 Dataset with its publication pending (from PRIDE)Dataset title: Cystic Fibrosis disease Urine exosomesPossible reference: Asef, A. et al. (2018) Immunologic Role of Extracellular Vesicles and Exosomes in the Pathogenesis of Cystic Fibrosis., Tanaffos, PMID 30627176
PXD018530 Dataset with its publication pending (from PRIDE)Dataset title: The PII protein-protein interaction network in Azospirillum brasilense reveals a novel role of PII in the control of c-di-GMP homeostasisPossible reference: Gerhardt, ECM. et al. (2020) The Protein-Protein Interaction Network Reveals a Novel Role of the Signal Transduction Protein PII in the Control of c-di-GMP Homeostasis in Azospirillum brasilense., mSystems, PMID 33144311
PXD018528 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic changes of Klebsiella pneumoniae in response to colistin treatment and crrB mutation-mediated colistin resistancePossible reference: Sun, L. et al. (2020) Proteomic Changes of Klebsiella pneumoniae in Response to Colistin Treatment and crrB Mutation-Mediated Colistin Resistance., Antimicrob Agents Chemother, PMID 32229491
PXD018460 Dataset with its publication pending (from PRIDE)Dataset title: Peptidylarginine Deiminase inhibition abolishes the production of large extracellular vesicles from Giardia intestinalis, affecting host-pathogen interactions by hindering adhesion to host cellsPossible reference: Gavinho, B. et al. (2020) Peptidylarginine Deiminase Inhibition Abolishes the Production of Large Extracellular Vesicles From Giardia intestinalis, Affecting Host-Pathogen Interactions by Hindering Adhesion to Host Cells., Front Cell Infect Microbiol, PMID 33072615
PXD018433 no publication (from MassIVE)Dataset title: Calsyntenin-3 directly interacts with both alpha- and beta-neurexinsPossible reference: Kim, H. et al. (2020) Calsyntenin-3 interacts with both α- and β-neurexins in the regulation of excitatory synaptic innervation in specific Schaffer collateral pathways., J Biol Chem, PMID 32434929
PXD018415 no publication (from MassIVE)Dataset title: Essential roles for deubiquitination in Leishmania life cycle progressionPossible reference: Damianou, A. et al. (2020) Essential roles for deubiquitination in Leishmania life cycle progression., PLoS Pathog, PMID 32544189
PXD018411 Dataset with its publication pending (from PRIDE)Dataset title: FLEXIQuant-LF: Robust Regression to quantify protein modification extent in label-free proteomics dataPossible reference: Schlaffner, CN. et al. (2020) FLEXIQuant-LF to quantify protein modification extent in label-free proteomics data., Elife, PMID 33284109
PXD018397 Dataset with its publication pending (from PRIDE)Dataset title: Salinity adaptation in the principal arboviral vector Aedes aegypti characterized by larval cuticle changesPossible reference: Ramasamy, R. et al. (2021) Transcriptomic, proteomic and ultrastructural studies on salinity-tolerant Aedes aegypti in the context of rising sea levels and arboviral disease epidemiology., BMC Genomics, PMID 33836668
PXD018387 Dataset with its publication pending (from PRIDE)Dataset title: Allosteric HSP70 inhibitors perturb mitochondrial proteostasis and overcome proteasome inhibitor resistance in multiple myelomaPossible reference: Ferguson, ID. et al. (2022) Allosteric HSP70 inhibitors perturb mitochondrial proteostasis and overcome proteasome inhibitor resistance in multiple myeloma., Cell Chem Biol, PMID 35853457
PXD018382 Dataset with its publication pending (from PRIDE)Dataset title: Mycobacteria tolerate carbon monoxide by remodelling their respiratory chainPossible reference: Bayly, K. et al. (2021) Mycobacteria Tolerate Carbon Monoxide by Remodeling Their Respiratory Chain., mSystems, PMID 33975973
PXD018380 Dataset with its publication pending (from PRIDE)Dataset title: Meltome Analysis of Geobacillus thermoleoverans ARTRW1Possible reference: Oztug, M. et al. (2020) Thermal Proteome Profiling and Meltome Analysis of a Thermophilic Bacterial Strain, Geobacillus thermoleovorans ARTRW1: Toward Industrial Applications., OMICS, PMID 33085568
PXD018375 Dataset with its publication pending (from PRIDE)Dataset title: Global mapping of Salmonella enterica-host protein-protein interactions during infectionPossible reference: Walch, P. et al. (2021) Global mapping of Salmonella enterica-host protein-protein interactions during infection., Cell Host Microbe, PMID 34237247
PXD018356 no publication (from MassIVE)Dataset title: Phosphopeptides identified on SPEGPossible reference: Guo, H. et al. (2017) Exercise-responsive phosphoproteins in the heart., J Mol Cell Cardiol, PMID 28826663
PXD018353 Dataset with its publication pending (from PRIDE)Dataset title: Altered N-glycan composition impacts flagella mediated adhesion in Chlamydomonas reinhardtiiPossible reference: Xu, N. et al. (2020) Altered N-glycan composition impacts flagella-mediated adhesion in Chlamydomonas reinhardtii., Elife, PMID 33300874
PXD018352 Dataset with its publication pending (from PRIDE)Dataset title: Niche stiffening compromises stem cell potential during aging by reducing chromatin accessibility at bivalent promotersPossible reference: Koester, J. et al. (2021) Niche stiffening compromises hair follicle stem cell potential during ageing by reducing bivalent promoter accessibility., Nat Cell Biol, PMID 34239060
PXD018335 no publication (from MassIVE)Dataset title: Integrative analysis of proteome and transcriptome dynamics during Bacillus subtilis spore revivalPossible reference: Swarge, B. et al. (2020) Integrative Analysis of Proteome and Transcriptome Dynamics during Bacillus subtilis Spore Revival., mSphere, PMID 32759332
PXD018328 Dataset with its publication pending (from PRIDE)Dataset title: Human cytomegalovirus long non-coding RNA1.2 suppresses extracellular release of the pro-inflammatory cytokine IL-6 by blocking NF-κB activationPossible reference: Lau, B. et al. (2020) Human Cytomegalovirus Long Non-coding RNA1.2 Suppresses Extracellular Release of the Pro-inflammatory Cytokine IL-6 by Blocking NF-κB Activation., Front Cell Infect Microbiol, PMID 32793512
PXD018306 Dataset with its publication pending (from PRIDE)Dataset title: Cardiac organoids reveal mechanisms of human cardiogenesisPossible reference: Rufaihah, AJ. et al. (2021) Mending a broken heart: In vitro, in vivo and in silico models of congenital heart disease., Dis Model Mech, PMID 33787508
PXD018295 Dataset with its publication pending (from PRIDE)Dataset title: Improvements on the quantitative analysis of Trypanosoma cruzi histone post translational modificationsPossible reference: de Lima, LP. et al. (2020) Improvements on the quantitative analysis of Trypanosoma cruzi histone post translational modifications: Study of changes in epigenetic marks through the parasite's metacyclogenesis and life cycle., J Proteomics, PMID 32480077
PXD018268 Dataset with its publication pending (from PRIDE)Dataset title: Alt-RPL36 downregulates the PI3K-AKT-mTOR signaling pathway by interacting with TMEM24Possible reference: Cao, X. et al. (2021) Alt-RPL36 downregulates the PI3K-AKT-mTOR signaling pathway by interacting with TMEM24., Nat Commun, PMID 33479206
PXD018267 Dataset with its publication pending (from PRIDE)Dataset title: Schwann cell plasticity regulates neuroblastic tumor cell differentiationPossible reference: Weiss, T. et al. (2016) Proteomics and transcriptomics of peripheral nerve tissue and cells unravel new aspects of the human Schwann cell repair phenotype., Glia, PMID 27545331
PXD018258 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic analysis of necroptotic extracellular vesiclesPossible reference: Li, Y. et al. (2020) Proteomic analysis of extracellular vesicles released from heat-stroked hepatocytes reveals promotion of programmed cell death pathway., Biomed Pharmacother, PMID 32768969
PXD018243 Dataset with its publication pending (from iProX)Dataset title: Proteomics provides insights into the inhibition of Chinese hamster V79 cell proliferation in the deep underground environmentPossible reference: Liu, J. et al. (2020) Proteomics provides insights into the inhibition of Chinese hamster V79 cell proliferation in the deep underground environment., Sci Rep, PMID 32913333
PXD018229 Dataset with its publication pending (from PRIDE)Dataset title: Analysis of coagulation factor IX in bioreactor cell culture media predicts yield and quality of purified productPossible reference: Zacchi, LF. et al. (2021) Coagulation factor IX analysis in bioreactor cell culture supernatant predicts quality of the purified product., Commun Biol, PMID 33758337
PXD018200 Dataset with its publication pending (from jPOST)Dataset title: Proteome of rice plasma membrane in greening leafPossible reference: Iwasaki, Y. et al. (2020) Proteomics Analysis of Plasma Membrane Fractions of the Root, Leaf, and Flower of Rice., Int J Mol Sci, PMID 32977500
PXD018198 Dataset with its publication pending (from jPOST)Dataset title: Proteome of rice plasma membrane in leaf sheathPossible reference: Iwasaki, Y. et al. (2020) Proteomics Analysis of Plasma Membrane Fractions of the Root, Leaf, and Flower of Rice., Int J Mol Sci, PMID 32977500
PXD018194 Dataset with its publication pending (from PRIDE)Dataset title: Mouse mitochondrial CLPP substrate identificationPossible reference: Hofsetz, E. et al. (2020) The Mouse Heart Mitochondria N Terminome Provides Insights into ClpXP-Mediated Proteolysis., Mol Cell Proteomics, PMID 32467259
PXD018190 Dataset with its publication pending (from PRIDE)Dataset title: BRAF mutations disrupt the hypothalamo-pituitary axis leading to hypopituitarism in mouse and humansPossible reference: Gualtieri, A. et al. (2021) Activating mutations in BRAF disrupt the hypothalamo-pituitary axis leading to hypopituitarism in mice and humans., Nat Commun, PMID 33795686
PXD018179 Dataset with its publication pending (from PRIDE)Dataset title: Differential expression pattern of the proteome in response to cadmium stress based on proteomics analysis of wheat rootsPossible reference: Jian, M. et al. (2020) Differential expression pattern of the proteome in response to cadmium stress based on proteomics analysis of wheat roots., BMC Genomics, PMID 32380942
PXD018153 Dataset with its publication pending (from PRIDE)Dataset title: Proteome dynamics in persisting and resuscitating bacterial cellsPossible reference: Mishra, A. et al. (2018) Proteomic analysis of hydroxyl radical-induced resuscitation of hypoxia-induced dormant mycobacterial cells., Int J Mycobacteriol, PMID 29516880
PXD018101 no publication (from MassIVE)Dataset title: Proteomic Mapping of multifunctional complexes in triatomine SalivaPossible reference: Santiago, PB. et al. (2020) Proteomic Mapping of Multifunctional Complexes Within Triatomine Saliva., Front Cell Infect Microbiol, PMID 32984079
PXD018081 Dataset with its publication pending (from jPOST)Dataset title: Metaproteomics of microbial community in the fermented rice for melanogenesis inhibitor synthesisPossible reference: Sangkaew, O. et al. (2020) Metaproteomic investigation of functional insight into special defined microbial starter on production of fermented rice with melanogenesis inhibition activity., PLoS One, PMID 33147601
PXD018034 Dataset with its publication pending (from PRIDE)Dataset title: Maturation kinetics of a multiprotein complex revealed by metabolic labelingPossible reference: Onischenko, E. et al. (2020) Maturation Kinetics of a Multiprotein Complex Revealed by Metabolic Labeling., Cell, PMID 33333025
PXD018029 Dataset with its publication pending (from PRIDE)Dataset title: Proteome mapping of human gingival tissue in health and diseasePossible reference: Bao, K. et al. (2020) Proteome and Microbiome Mapping of Human Gingival Tissue in Health and Disease., Front Cell Infect Microbiol, PMID 33117738
PXD018015 Dataset with its publication pending (from PRIDE)Dataset title: A unique cell wall synthetic response evoked by glucosamine determines pathogenicity-associated fungal cellular differentiationPossible reference: Hu, P. et al. (2021) A unique cell wall synthetic response evoked by glucosamine determines pathogenicity-associated fungal cellular differentiation., PLoS Genet, PMID 34624015
PXD017980 no publication (from MassIVE)Dataset title: Functional partitioning of a liquid-like organelle during assembly of axonemal dyneinsPossible reference: Lee, C. et al. (2020) Functional partitioning of a liquid-like organelle during assembly of axonemal dyneins., Elife, PMID 33263282
PXD017976 Dataset with its publication pending (from PRIDE)Dataset title: Platelets fuel the inflammasome activation of innate immune cellsPossible reference: Rolfes, V. et al. (2020) Platelets Fuel the Inflammasome Activation of Innate Immune Cells., Cell Rep, PMID 32402278
PXD017971 Dataset with its publication pending (from PRIDE)Dataset title: The lytic polysaccharide monooxygenase of Pseudomonas aeruginosa promotes bacterial survival during systemic infectionPossible reference: Askarian, F. et al. (2021) The lytic polysaccharide monooxygenase CbpD promotes Pseudomonas aeruginosa virulence in systemic infection., Nat Commun, PMID 33623002
PXD017966 Dataset with its publication pending (from PRIDE)Dataset title: Carbon source dependent reprograming of anaerobic metabolism in Staphylococcus aureusPossible reference: Troitzsch, A. et al. (2021) Carbon Source-Dependent Reprogramming of Anaerobic Metabolism in Staphylococcus aureus., J Bacteriol, PMID 33526614
PXD017962 Dataset with its publication pending (from PRIDE)Dataset title: The gain-of-function allele bamAE470K bypasses the essential requirement for BamD in β-barrel outer membrane protein assemblyPossible reference: Hart, EM. et al. (2020) The gain-of-function allele bamAE470K bypasses the essential requirement for BamD in β-barrel outer membrane protein assembly., Proc Natl Acad Sci U S A, PMID 32675245
PXD017952 Dataset with its publication pending (from PRIDE)Dataset title: Multi-omics profiling of paired primary and recurrent glioblastoma patient tissuesPossible reference: Dekker, LJM. et al. (2020) Multiomics profiling of paired primary and recurrent glioblastoma patient tissues., Neurooncol Adv, PMID 32793885
PXD017951 Dataset with its publication pending (from PRIDE)Dataset title: PrimPol primase mediates replication traverse of DNA interstrand crosslinksPossible reference: González-Acosta, D. et al. (2021) PrimPol-mediated repriming facilitates replication traverse of DNA interstrand crosslinks., EMBO J, PMID 34128550
PXD017932 Dataset with its publication pending (from PRIDE)Dataset title: Identification and quantification of small proteins and peptides in Staphylococcus aureusPossible reference: Blankenburg, S. et al. (2019) Improving Proteome Coverage for Small Sample Amounts: An Advanced Method for Proteomics Approaches with Low Bacterial Cell Numbers., Proteomics, PMID 31532911
PXD017911 no publication (from MassIVE)Dataset title: Dental calculus from archaeological sites in AfricaPossible reference: Buckley, S. et al. (2014) Dental calculus reveals unique insights into food items, cooking and plant processing in prehistoric central Sudan., PLoS One, PMID 25028938
PXD017901 Dataset with its publication pending (from PRIDE)Dataset title: Quantitative Proteomics of different truffle speciesPossible reference: Vita, F. et al. (2013) Proteins from Tuber magnatum Pico fruiting bodies naturally grown in different areas of Italy., Proteome Sci, PMID 23375047
PXD017891 Dataset with its publication pending (from PRIDE)Dataset title: Optimization of skeletal protein preparation for LC-MS/MS sequencing yields additional coral skeletal proteins in Stylophora pistillataPossible reference: Peled, Y. et al. (2020) Optimization of skeletal protein preparation for LC-MS/MS sequencing yields additional coral skeletal proteins in Stylophora pistillata., BMC Mater, PMID 32724895
PXD017883 no publication (from MassIVE)Dataset title: S-nitrosylation in zebra fish tissue regenerationPossible reference: Matrone, G. et al. (2021) Nuclear S-nitrosylation impacts tissue regeneration in zebrafish., Nat Commun, PMID 34725362
PXD017876 Dataset with its publication pending (from PRIDE)Dataset title: Modern and Fossil Coral Skeletal ProteomesPossible reference: Drake, JL. et al. (2020) First sequencing of ancient coral skeletal proteins., Sci Rep, PMID 33173075
PXD017875 Dataset with its publication pending (from PRIDE)Dataset title: Identification of X-linked genes that drive sex differences in murine embryonic stem cellsPossible reference: Genolet, O. et al. (2021) Identification of X-chromosomal genes that drive sex differences in embryonic stem cells through a hierarchical CRISPR screening approach., Genome Biol, PMID 33863351
PXD017870 Dataset with its publication pending (from PRIDE)Dataset title: Membrane proteome of L. amazonensis PH8 and LV79 strainsPossible reference: Tano, FT. et al. (2022) Proteome and morphological analysis show unexpected differences between promastigotes of Leishmania amazonensis PH8 and LV79 strains., PLoS One, PMID 35998173
PXD017848 Dataset with its publication pending (from PRIDE)Dataset title: Pilot evaluation of two Fasciola hepatica biomarkers for supporting TCBZ efficacy diagnosticsPossible reference: Collett, CF. et al. (2020) Pilot Evaluation of Two Fasciola hepatica Biomarkers for Supporting Triclabendazole (TCBZ) Efficacy Diagnostics., Molecules, PMID 32751696
PXD017835 Dataset with its publication pending (from PRIDE)Dataset title: Antioxidant mechanism of glutaredoxins and their role in symbiotic nitrogen fixation in Rhizobium leguminosarum bv. viciae 3841Possible reference: Zou, Q. et al. (2021) Antioxidant ability of glutaredoxins and their role in symbiotic nitrogen fixation in Rhizobium leguminosarum bv. viciae 3841., Appl Environ Microbiol, PMID 33277272
PXD017834 Dataset with its publication pending (from PRIDE)Dataset title: An Integrated Quantitative Proteomics Workflow for Biomarker Discovery and Validation in PlasmaPossible reference: Dayon, L. et al. (2014) Comprehensive and Scalable Highly Automated MS-Based Proteomic Workflow for Clinical Biomarker Discovery in Human Plasma., J Proteome Res, PMID 25058407
PXD017771 no publication (from MassIVE)Dataset title: Age-Related Changes in Hair Shaft Protein Profiling and Genetically Variant PeptidesPossible reference: Plott, TJ. et al. (2020) Age-Related Changes in Hair Shaft Protein Profiling and Genetically Variant Peptides., Forensic Sci Int Genet, PMID 32485593
PXD017734 Dataset with its publication pending (from PRIDE)Dataset title: Histoplasma capsulatum lipid mapPossible reference: Huang, JH. et al. (2015) CR3 and Dectin-1 Collaborate in Macrophage Cytokine Response through Association on Lipid Rafts and Activation of Syk-JNK-AP-1 Pathway., PLoS Pathog, PMID 26132276
PXD017732 Dataset with its publication pending (from PRIDE)Dataset title: Bioinformatic analysis of membrane and associated proteins in murine cardiomyocytes and human myocardiumPossible reference: Wang, L. et al. (2014) Effects of downregulation of microRNA-181a on H2O2-induced H9c2 cell apoptosis via the mitochondrial apoptotic pathway., Oxid Med Cell Longev, PMID 24683439
PXD017721 Dataset with its publication pending (from PRIDE)Dataset title: Proteomics profiling of KAIMRC1 in comparison to MDA-MB231 and MCF-7Possible reference: Alghanem, B. et al. (2020) Proteomics Profiling of KAIMRC1 in Comparison to MDA-MB231 and MCF-7., Int J Mol Sci, PMID 32570693
PXD017720 Dataset with its publication pending (from PRIDE)Dataset title: High-throughput proteotyping based on microplate paramagnetic beads and phylopeptidomicsPossible reference: Hayoun, K. et al. (2020) High-throughput proteotyping of bacterial isolates by double barrel chromatography-tandem mass spectrometry based on microplate paramagnetic beads and phylopeptidomics., J Proteomics, PMID 32619772
PXD017715 Dataset with its publication pending (from PRIDE)Dataset title: Long-term effects on the transcriptome and proteome in Sprague Dawley rat thyroid and plasma after internal low dose 131I exposurePossible reference: Larsson, M. et al. (2020) Long-term transcriptomic and proteomic effects in Sprague Dawley rat thyroid and plasma after internal low dose 131I exposure., PLoS One, PMID 33382739
PXD017709 Dataset with its publication pending (from PRIDE)Dataset title: Anaerobic sulfur oxidation underlies adaptation of a chemosynthetic symbiont to oxic-anoxic interfacesPossible reference: Paredes, GF. et al. (2021) Anaerobic Sulfur Oxidation Underlies Adaptation of a Chemosynthetic Symbiont to Oxic-Anoxic Interfaces., mSystems, PMID 34058098
PXD017707 Dataset with its publication pending (from jPOST)Dataset title: Detection of PD-L1 acetylationPossible reference: Kan-o, K. et al. (2013) PI3K-delta mediates double-stranded RNA-induced upregulation of B7-H1 in BEAS-2B airway epithelial cells., Biochem Biophys Res Commun, PMID 23660190
PXD017699 Dataset with its publication pending (from PRIDE)Dataset title: Cul4b promotes CD4 T cell expansion by aiding the repair of damaged DNAPossible reference: Dar, AA. et al. (2021) The E3 ubiquitin ligase Cul4b promotes CD4+ T cell expansion by aiding the repair of damaged DNA., PLoS Biol, PMID 33524014
PXD017696 Dataset with its publication pending (from PRIDE)Dataset title: Comprehensive quantitative analysis of the proteome of Leishmania (Viannia) speciesPossible reference: Pinho, N. et al. (2020) In-depth quantitative proteomics uncovers specie-specific metabolic programs in Leishmania (Viannia) species., PLoS Negl Trop Dis, PMID 32804927
PXD017674 Dataset with its publication pending (from PRIDE)Dataset title: Influence of substrate stiffness on the proteome of undifferentiated human umbilical cord matrix mesenchymal stem/stromal cells (hUCM-MSCs)Possible reference: Domingues, C. et al. (2020) Cofilin-1 Is a Mechanosensitive Regulator of Transcription., Front Cell Dev Biol, PMID 32903827
PXD017658 Dataset with its publication pending (from PRIDE)Dataset title: MAX-mutant small cell lung cancers exhibit impaired activities of MGA-dependent ncPRC1.6.Possible reference: Llabata, P. et al. (2021) MAX mutant small-cell lung cancers exhibit impaired activities of MGA-dependent noncanonical polycomb repressive complex., Proc Natl Acad Sci U S A, PMID 34493659
PXD017639 Dataset with its publication pending (from PRIDE)Dataset title: Isolation window optimization using predicted libraries for deep and accurate proteome profiling by data-independent acquisitionPossible reference: Doellinger, J. et al. (2020) Isolation Window Optimization of Data-Independent Acquisition Using Predicted Libraries for Deep and Accurate Proteome Profiling., Anal Chem, PMID 32840101
PXD017622 Dataset with its publication pending (from PRIDE)Dataset title: A divergent cyclin/cyclin-dependent kinase complex controls the atypical replication of Plasmodium berghei during gametogony and parasite transmission.Possible reference: Balestra, AC. et al. (2020) A divergent cyclin/cyclin-dependent kinase complex controls the atypical replication of a malaria parasite during gametogony and transmission., Elife, PMID 32568069
PXD017618 Dataset with its publication pending (from PRIDE)Dataset title: ProteoCombiner: integrating bottom-up with top-down proteomics data for improved proteoform assessmentPossible reference: Lima, DB. et al. (2021) ProteoCombiner: integrating bottom-up with top-down proteomics data for improved proteoform assessment., Bioinformatics, PMID 33165572
PXD017599 no publication (from MassIVE)Dataset title: Age-induced methylmalonic acid accumulation promotes cancer aggressiveness and metastatic diseasePossible reference: Gomes, AP. et al. (2020) Age-induced accumulation of methylmalonic acid promotes tumour progression., Nature, PMID 32814897
PXD017542 Dataset with its publication pending (from PRIDE)Dataset title: Production and application of recombinant extracellular vesicles for method development, data normalization and assessment of pre-analytical variablesPossible reference: Geeurickx, E. et al. (2021) Recombinant extracellular vesicles as biological reference material for method development, data normalization and assessment of (pre-)analytical variables., Nat Protoc, PMID 33452501
PXD017517 Dataset with its publication pending (from PRIDE)Dataset title: Inhibitor of Differentiation 4 (ID4) represses myoepithelial differentiation of mammary stem cells through its interaction with HEBPossible reference: Holliday, H. et al. (2021) Inhibitor of Differentiation 4 (ID4) represses mammary myoepithelial differentiation via inhibition of HEB., iScience, PMID 33554073
PXD017490 no publication (from MassIVE)Dataset title: Absolute quantification of transcription factors reveals principles of gene regulation in erythropoiesisPossible reference: Palii, CG. et al. (2019) Single-Cell Proteomics Reveal that Quantitative Changes in Co-expressed Lineage-Specific Transcription Factors Determine Cell Fate., Cell Stem Cell, PMID 30880026
PXD017489 Dataset with its publication pending (from PRIDE)Dataset title: Proteomics support the threespine stickleback egg coat as a protective oocyte envelopePossible reference: Killingbeck, EE. et al. (2021) Proteomics support the threespine stickleback egg coat as a protective oocyte envelope., Mol Reprod Dev, PMID 34148267
PXD017488 Dataset with its publication pending (from PRIDE)Dataset title: Proteomics support the threespine stickleback egg coat as a protective oocyte envelopePossible reference: Killingbeck, EE. et al. (2021) Proteomics support the threespine stickleback egg coat as a protective oocyte envelope., Mol Reprod Dev, PMID 34148267
PXD017475 Dataset with its publication pending (from PRIDE)Dataset title: The lncRNA MIR31HG regulates the senescence associated secretory phenotypePossible reference: Montes, M. et al. (2021) The long non-coding RNA MIR31HG regulates the senescence associated secretory phenotype., Nat Commun, PMID 33911076
PXD017450 Dataset with its publication pending (from PRIDE)Dataset title: High-Throughput Stool Metaproteome PipelinePossible reference: Kolmeder, CA. et al. (2012) Comparative metaproteomics and diversity analysis of human intestinal microbiota testifies for its temporal stability and expression of core functions., PLoS One, PMID 22279554
PXD017445 Dataset with its publication pending (from PRIDE)Dataset title: A chemical screen reveals a connection between lipid metabolism and protein translationPossible reference: Touchette, MH. et al. (2017) A Screen for Protein-Protein Interactions in Live Mycobacteria Reveals a Functional Link between the Virulence-Associated Lipid Transporter LprG and the Mycolyltransferase Antigen 85A., ACS Infect Dis, PMID 28276676
PXD017435 Dataset with its publication pending (from jPOST)Dataset title: Proteomic analysis of the promotive effect of plant-derived smoke on soybeanPossible reference: Zhong, Z. et al. (2020) Plant-derived smoke enhances plant growth through ornithine-synthesis pathway and ubiquitin-proteasome pathway in soybean., J Proteomics, PMID 32294531
PXD017419 Dataset with its publication pending (from PRIDE)Dataset title: Thermal proteome profiling on zebrafish using napabucasinPossible reference: Leijten, NM. et al. (2021) Thermal Proteome Profiling in Zebrafish Reveals Effects of Napabucasin on Retinoic Acid Metabolism., Mol Cell Proteomics, PMID 33594990
PXD017388 Tong Zhang, Matthew J. Gaffrey, Dennis G. Thomas, Thomas J. Weber, Becky M. Hess, Karl K.Weitz, Paul D. Piehowski, Vladislav A. Petyuk, Ronald J. Moore, Wei-Jun Qian, and Brian D. Thrall. A proteome-wide assessment of the oxidative stress paradigm for met (from MassIVE)Dataset title: Reproducible label-free quantitative proteomics profiling cellular responses to engineered nanomaterialsPossible reference: Zhang, T. et al. (2020) Block Design with Common Reference Samples Enables Robust Large-Scale Label-Free Quantitative Proteome Profiling., J Proteome Res, PMID 32407631
PXD017374 Dataset with its publication pending (from PRIDE)Dataset title: Differential expressed proteins between Mycoplasma bovis different strainsPossible reference: Khan, FA. et al. (2018) Proteomics identification and characterization of MbovP730 as a potential DIVA antigen of Mycoplasma bovis., Oncotarget, PMID 29983863
PXD017367 Dataset with its publication pending (from jPOST)Dataset title: Soybean under smoke and floodingPossible reference: Li, X. et al. (2018) Proteomic analysis of the effect of plant-derived smoke on soybean during recovery from flooding stress., J Proteomics, PMID 29704570
PXD017366 no publication (from MassIVE)Dataset title: Mass spectrometry-based proteomic characterization of cutaneous melanoma ectosomes reveals the presence of cancer-related moleculesPossible reference: Surman, M. et al. (2020) Mass Spectrometry-Based Proteomic Characterization of Cutaneous Melanoma Ectosomes Reveals the Presence of Cancer-Related Molecules., Int J Mol Sci, PMID 32331267
PXD017350 Dataset with its publication pending (from PRIDE)Dataset title: Changes in bovine Lymphocyte proteome after stimulation with pokeweed mitogenPossible reference: Kleinwort, KJH. et al. (2022) Bovine Peripheral Blood Derived Lymphocyte Proteome and Secretome Show Divergent Reaction of Bovine Immune Phenotypes after Stimulation with Pokeweed Mitogen., Proteomes, PMID 35225986
PXD017344 Dataset with its publication pending (from PRIDE)Dataset title: Proximity-dependent biotin identification (BioID) reveals a dynamic LSD1-CoREST interactome during embryonic stem cell differentiationPossible reference: Barnes, CE. et al. (2022) Proximity-dependent biotin identification (BioID) reveals a dynamic LSD1-CoREST interactome during embryonic stem cell differentiation., Mol Omics, PMID 34709266
PXD017343 Dataset with its publication pending (from PRIDE)Dataset title: Analysis of CD5 signalosome in primary T cellsPossible reference: Voisinne, G. et al. (2016) Co-recruitment analysis of the CBL and CBLB signalosomes in primary T cells identifies CD5 as a key regulator of TCR-induced ubiquitylation., Mol Syst Biol, PMID 27474268
PXD017342 Dataset with its publication pending (from PRIDE)Dataset title: Proteomics analysis with the Aurora-A PROTAC, JB170Possible reference: Gross, PH. et al. (2022) Accelerating PROTAC drug discovery: Establishing a relationship between ubiquitination and target protein degradation., Biochem Biophys Res Commun, PMID 36084553
PXD017298 Dataset with its publication pending (from PRIDE)Dataset title: Identification of gene fusion events in Mycobacterium tuberculosis that encode novel chimeric proteinsPossible reference: Gallant, J. et al. (2020) Identification of gene fusion events in Mycobacterium tuberculosis that encode chimeric proteins., NAR Genom Bioinform, PMID 33575588
PXD017295 no publication (from MassIVE)Dataset title: Mitophagy effector FUNDC1 controls mitochondrial reprogramming and cellular plasticityPossible reference: Li, J. et al. (2020) The mitophagy effector FUNDC1 controls mitochondrial reprogramming and cellular plasticity in cancer cells., Sci Signal, PMID 32723812
PXD017292 Dataset with its publication pending (from PRIDE)Dataset title: B-cell-specific MYD88 L252P expression causes a premalignant gammopathy resembling IgM MGUSPossible reference: Schmidt, K. et al. (2020) B-Cell-Specific Myd88 L252P Expression Causes a Premalignant Gammopathy Resembling IgM MGUS., Front Immunol, PMID 33343574
PXD017279 Dataset with its publication pending (from PRIDE)Dataset title: Human cytomegalovirus protein pUL36: a dual cell death pathway inhibitorPossible reference: Fletcher-Etherington, A. et al. (2020) Human cytomegalovirus protein pUL36: A dual cell death pathway inhibitor., Proc Natl Acad Sci U S A, PMID 32690704
PXD017277 Dataset with its publication pending (from PRIDE)Dataset title: Succession of Bifidobacterium longum strains in response to a changing early life nutritional environment reveals dietary substrate adaptationsPossible reference: Kujawska, M. et al. (2020) Succession of Bifidobacterium longum Strains in Response to a Changing Early Life Nutritional Environment Reveals Dietary Substrate Adaptations., iScience, PMID 32721872
PXD017275 Dataset with its publication pending (from PRIDE)Dataset title: Eudiplozoon nipponicum (Monogenea) - tissue specific proteome of parasitic wormPossible reference: Roudnický, P. et al. (2020) Laser capture microdissection in combination with mass spectrometry: Approach to characterization of tissue-specific proteomes of Eudiplozoon nipponicum (Monogenea, Polyopisthocotylea)., PLoS One, PMID 32555742
PXD017261 Dataset with its publication pending (from PRIDE)Dataset title: DIFFERENTIATION-DEPENDENT SUSCEPTIBILITY OF HUMAN MUSCLE CELLS TO ZIKA VIRUS INFECTIONPossible reference: Legros, V. et al. (2020) Differentiation-dependent susceptibility of human muscle cells to Zika virus infection., PLoS Negl Trop Dis, PMID 32817655
PXD017256 no publication (from MassIVE)Dataset title: Autism-linked Cullin3 germline haploinsufficiency impacts cytoskeletal dynamics and cortical neurogenesis through RhoA signalingPossible reference: Amar, M. et al. (2021) Autism-linked Cullin3 germline haploinsufficiency impacts cytoskeletal dynamics and cortical neurogenesis through RhoA signaling., Mol Psychiatry, PMID 33727673
PXD017249 Dataset with its publication pending (from jPOST)Dataset title: Comparative proteomic analysis of protein methylation provides insight into the resistance of hepatocellular carcinoma to 5-fluorouracilPossible reference: Liu, Z. et al. (2020) Comparative proteomic analysis of protein methylation provides insight into the resistance of hepatocellular carcinoma to 5-fluorouracil., J Proteomics, PMID 32198070
PXD017219 Dataset with its publication pending (from PRIDE)Dataset title: Protein Tyrosine Phosphatase SHP2 Controls Interleukin-8 Expression in Breast Cancer CellsPossible reference: Amante, RJ. et al. (2022) Protein Tyrosine Phosphatase SHP2 Controls Interleukin-8 Expression in Breast Cancer Cells., J Mammary Gland Biol Neoplasia, PMID 35739379
PXD017199 Dataset with its publication pending (from PRIDE)Dataset title: DECIPHERING THE SIGNALING NETWORK LANDSCAPE OF BREAST CANCER IMPROVES DRUG SENSITIVITY PREDICTIONPossible reference: Tognetti, M. et al. (2021) Deciphering the signaling network of breast cancer improves drug sensitivity prediction., Cell Syst, PMID 33932331
PXD017198 Dataset with its publication pending (from PRIDE)Dataset title: Evaluation of protein purification techniques and effects of storage duration on LC-MS/MS analysis of archived FFPE human CRC tissuesPossible reference: Rossouw, SC. et al. (2021) Evaluation of Protein Purification Techniques and Effects of Storage Duration on LC-MS/MS Analysis of Archived FFPE Human CRC Tissues., Pathol Oncol Res, PMID 34257588
PXD017171 Dataset with its publication pending (from PRIDE)Dataset title: Comprehensive functional analysis of Escherichia coli ribosomal RNA methyltransferasesPossible reference: Pletnev, P. et al. (2020) Comprehensive Functional Analysis of Escherichia coli Ribosomal RNA Methyltransferases., Front Genet, PMID 32174967
PXD017170 Dataset with its publication pending (from PRIDE)Dataset title: Hepatocyte-specific knockout of Nicotinamide phosphoribosyltransferase increases susceptibility for liver fibrosis in micePossible reference: Dall, M. et al. (2021) Hepatocyte-specific perturbation of NAD+ biosynthetic pathways in mice induces reversible nonalcoholic steatohepatitis-like phenotypes., J Biol Chem, PMID 34762911
PXD017159 Dataset with its publication pending (from PRIDE)Dataset title: Dynamics in protein translation sustaining T cell preparednessPossible reference: Wolf, T. et al. (2020) Dynamics in protein translation sustaining T cell preparedness., Nat Immunol, PMID 32632289
PXD017129 Dataset with its publication pending (from PRIDE)Dataset title: Serum proteome profiling in canine chronic valve disease using TMT-based quantitative proteomicsPossible reference: Kuleš, J. et al. (2020) Serum proteome profiling in canine chronic valve disease using a TMT-based quantitative proteomics approach., J Proteomics, PMID 32422277
PXD017121 Dataset with its publication pending (from PRIDE)Dataset title: Global Profiling of the Lysine Crotonylome in Different Pluripotent StatesPossible reference: Lv, Y. et al. (2021) Global Profiling of the Lysine Crotonylome in Different Pluripotent States., Genomics Proteomics Bioinformatics, PMID 33746086
PXD017088 Dataset with its publication pending (from PRIDE)Dataset title: The integrin linked kinase is required for chemokine-triggered high affinity conformation of the leukocyte β2-integrin LFA-1The integrin linked kinase is required for chemokine-triggered high affinity conformation of the leukocyte β2-integrin LFA-1Possible reference: Margraf, A. et al. (2020) The integrin-linked kinase is required for chemokine-triggered high-affinity conformation of the neutrophil β2-integrin LFA-1., Blood, PMID 32730588
PXD017074 Dataset with its publication pending (from iProX)Dataset title: protein partners of novel shell matrix proteins of Mytilus coruscusPossible reference: Jiang, Y. et al. (2020) Molecular characterization of a whirlin-like protein with biomineralization-related functions from the shell of Mytilus coruscus., PLoS One, PMID 32267882
PXD017067 Dataset with its publication pending (from PRIDE)Dataset title: The dynamic surface proteome of allergenic fungal conidiaPossible reference: Blango, MG. et al. (2020) Dynamic Surface Proteomes of Allergenic Fungal Conidia., J Proteome Res, PMID 32233371
PXD017066 Dataset with its publication pending (from PRIDE)Dataset title: Improving identification of in-organello protein-protein interactions using an affinity-enrichable, isotopically-coded, and mass spectrometry-cleavable chemical crosslinkerPossible reference: Makepeace, KAT. et al. (2020) Improving Identification of In-organello Protein-Protein Interactions Using an Affinity-enrichable, Isotopically Coded, and Mass Spectrometry-cleavable Chemical Crosslinker., Mol Cell Proteomics, PMID 32051233
PXD016995 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic Analysis of Proteins Downstream of Autism-Associated Gene DIXDC1Possible reference: Kwan, V. et al. (2021) Proteomic Analysis Reveals Autism-Associated Gene DIXDC1 Regulates Proteins Associated with Mitochondrial Organization and Function., J Proteome Res, PMID 33337894
PXD016976 Dataset with its publication pending (from PanoramaPublic)Dataset title: Mass Spectrometry-GUided Immunoassay DEvelopment (MS-GUIDE)Possible reference: Goetze, S. et al. (2022) Use of MS-GUIDE for identification of protein biomarkers for risk stratification of patients with prostate cancer., Clin Proteomics, PMID 35477343
PXD016962 Dataset with its publication pending (from PRIDE)Dataset title: Genome-scale transcription-translation mapping reveals features of Zymomonas mobilis transcription units and promotersPossible reference: Vera, JM. et al. (2020) Genome-Scale Transcription-Translation Mapping Reveals Features of Zymomonas mobilis Transcription Units and Promoters., mSystems, PMID 32694125
PXD016943 Dataset with its publication pending (from PRIDE)Dataset title: Nematostella toxins expression under stressPossible reference: Nicosia, A. et al. (2014) Characterization of small HSPs from Anemonia viridis reveals insights into molecular evolution of alpha crystallin genes among cnidarians., PLoS One, PMID 25251681
PXD016934 no publication (from MassIVE)Dataset title: Gene signature distinguishing TNBC from non-TNBCPossible reference: Mudvari, P. et al. (2013) Genomic insights into triple-negative and HER2-positive breast cancers using isogenic model systems., PLoS One, PMID 24086418
PXD016925 Dataset with its publication pending (from PRIDE)Dataset title: Sarcoptes scabiei ES proteomicsPossible reference: Randall, TA. et al. (2017) Proteases of Dermatophagoides pteronyssinus., Int J Mol Sci, PMID 28587273
PXD016914 Dataset with its publication pending (from PRIDE)Dataset title: Design and experimental evaluation of a minimal, innocuous watermarking strategy to distinguish near-identical DNA and RNA sequencesPossible reference: Boonekamp, FJ. et al. (2020) Design and Experimental Evaluation of a Minimal, Innocuous Watermarking Strategy to Distinguish Near-Identical DNA and RNA Sequences., ACS Synth Biol, PMID 32413257
PXD016907 Dataset with its publication pending (from jPOST)Dataset title: Limited impact of cytoplasmic mRNA recapping on proteome complexityPossible reference: Agana, BA. et al. (2020) Cytoplasmic mRNA recapping has limited impact on proteome complexity., Open Biol, PMID 33234072
PXD016905 no publication (from MassIVE)Dataset title: Noise exposures causing hearing loss generate proteotoxic stress and activate the proteostasis networkPossible reference: Jongkamonwiwat, N. et al. (2020) Noise Exposures Causing Hearing Loss Generate Proteotoxic Stress and Activate the Proteostasis Network., Cell Rep, PMID 33238128
PXD016894 Dataset with its publication pending (from jPOST)Dataset title: Comparative phosphoproteomic analysis of raf36raf22 in ArabidopsisPossible reference: Kamiyama, Y. et al. (2021) Arabidopsis group C Raf-like protein kinases negatively regulate abscisic acid signaling and are direct substrates of SnRK2., Proc Natl Acad Sci U S A, PMID 34282011
PXD016890 no publication (from MassIVE)Dataset title: Effects of mobile phone electromagnetic radiation on rat hippocampus proteomePossible reference: Singh, KV. et al. (2022) Effects of mobile phone electromagnetic radiation on rat hippocampus proteome., Environ Toxicol, PMID 34984797
PXD016882 Dataset with its publication pending (from PRIDE)Dataset title: Study of matrix proteins synthesized by DU145 and PC3 prostate cancer cells alone or in co-culture with prostate-derived fibroblasts.Possible reference: Kim, W. et al. (2014) RUNX1 is essential for mesenchymal stem cell proliferation and myofibroblast differentiation., Proc Natl Acad Sci U S A, PMID 25313057
PXD016863 Dataset with its publication pending (from PRIDE)Dataset title: Encystation deep proteome of Giardia duodenalisPossible reference: Balan, B. et al. (2021) Multimodal regulation of encystation in Giardia duodenalis revealed by deep proteomics., Int J Parasitol, PMID 34331939
PXD016861 Dataset with its publication pending (from PRIDE)Dataset title: Role of Specialized Composition of SWI/SNF Complexes in Prostate Cancer Lineage PlasticityPossible reference: Cyrta, J. et al. (2020) Role of specialized composition of SWI/SNF complexes in prostate cancer lineage plasticity., Nat Commun, PMID 33144576
PXD016855 no publication (from MassIVE)Dataset title: Cerebral organoids model neocortical development disrupted by 16p11.2 CNV in autismPossible reference: Urresti, J. et al. (2021) Cortical organoids model early brain development disrupted by 16p11.2 copy number variants in autism., Mol Psychiatry, PMID 34433918
PXD016790 Dataset with its publication pending (from PRIDE)Dataset title: MALAT1 (metastasis-associated lung adenocarcinoma transcript 1) Human HCC proteomicsPossible reference: Wang, H. et al. (2021) An Integrated Transcriptomics and Proteomics Analysis Implicates lncRNA MALAT1 in the Regulation of Lipid Metabolism., Mol Cell Proteomics, PMID 34478876
PXD016776 Dataset with its publication pending (from PRIDE)Dataset title: Comprehensive chemical proteomics for target deconvolution of the redox active drug auranofinPossible reference: Saei, AA. et al. (2020) Comprehensive chemical proteomics for target deconvolution of the redox active drug auranofin., Redox Biol, PMID 32199331
PXD016772 Dataset with its publication pending (from PRIDE)Dataset title: Npl3 stabilizes R-loops at telomeres to prevent accelerated replicative senescencePossible reference: Pérez-Martínez, L. et al. (2020) Npl3 stabilizes R-loops at telomeres to prevent accelerated replicative senescence., EMBO Rep, PMID 32026548
PXD016770 no publication (from MassIVE)Dataset title: Generation of aggregates of alpha-lactalbumin by UV-B light exposurePossible reference: Zhao, Z. et al. (2020) Generation of Aggregates of α-Lactalbumin by UV-B Light Exposure., J Agric Food Chem, PMID 32396720
PXD016766 Dataset with its publication pending (from PRIDE)Dataset title: Benchmarking the Orbitrap Tribrid Eclipse for Next Generation Multiplexed ProteomicsPossible reference: Yu, Q. et al. (2020) Benchmarking the Orbitrap Tribrid Eclipse for Next Generation Multiplexed Proteomics., Anal Chem, PMID 32250601
PXD016752 no publication (from MassIVE)Dataset title: Cross-linking modifications of HDL apoproteins by oxidized phospholipids: Structural characterization, in vivo detection, and functional implicationsPossible reference: Gao, D. et al. (2020) Cross-linking modifications of HDL apoproteins by oxidized phospholipids: structural characterization, in vivo detection, and functional implications., J Biol Chem, PMID 31907281
PXD016729 Dataset with its publication pending (from PRIDE)Dataset title: Identification of X-linked genes that drive sex differences in murine embryonic stem cellsPossible reference: Genolet, O. et al. (2021) Identification of X-chromosomal genes that drive sex differences in embryonic stem cells through a hierarchical CRISPR screening approach., Genome Biol, PMID 33863351
PXD016714 Dataset with its publication pending (from iProX)Dataset title: Proteomic analysis of KARS knockout zebrafish larvaePossible reference: Wang, J. et al. (2025) Proteomic profiling of kars knockout zebrafish larvae., Gene, PMID 40032059
PXD016664 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic analysis of bronchoalveolar lavage fluid during invasive pulmonary aspergillosis in mice and humansPossible reference: Machata, S. et al. (2020) Proteome analysis of bronchoalveolar lavage fluids reveals host and fungal proteins highly expressed during invasive pulmonary aspergillosis in mice and humans., Virulence, PMID 33043780
PXD016638 Dataset with its publication pending (from PRIDE)Dataset title: Dissecting the mechanism of signaling-triggered nuclear export of newly synthesized influenza virus ribonucleoprotein complexesPossible reference: Schreiber, A. et al. (2020) Dissecting the mechanism of signaling-triggered nuclear export of newly synthesized influenza virus ribonucleoprotein complexes., Proc Natl Acad Sci U S A, PMID 32601201
PXD016630 Dataset with its publication pending (from PRIDE)Dataset title: HIF-1α and HIF-2α differently regulate tumour development, metabolism and inflammation of clear cell renal cell carcinoma in micePossible reference: Hoefflin, R. et al. (2020) HIF-1α and HIF-2α differently regulate tumour development and inflammation of clear cell renal cell carcinoma in mice., Nat Commun, PMID 32807776
PXD016608 no publication (from MassIVE)Dataset title: The Q61H mutation decouples KRAS from upstream regulation and renders cancer cells resistant to SHP2 inhibitorsPossible reference: Gebregiworgis, T. et al. (2021) The Q61H mutation decouples KRAS from upstream regulation and renders cancer cells resistant to SHP2 inhibitors., Nat Commun, PMID 34725361
PXD016591 Dataset with its publication pending (from PRIDE)Dataset title: Functional Analysis of the Francisella Lysine DecarboxylasePossible reference: Felix, J. et al. (2021) Structural and functional analysis of the Francisella lysine decarboxylase as a key actor in oxidative stress resistance., Sci Rep, PMID 33441661
PXD016590 Dataset with its publication pending (from PRIDE)Dataset title: Desulfoluna protein expression analysisPossible reference: Liu, J. et al. (2020) Transcriptomic and Proteomic Responses of the Organohalide-Respiring Bacterium Desulfoluna spongiiphila to Growth with 2,6-Dibromophenol as the Electron Acceptor., Appl Environ Microbiol, PMID 31836581
PXD016581 Dataset with its publication pending (from PRIDE)Dataset title: Identification of Saliva Proteins of the Whitefly Bemisia tabaciPossible reference: Huang, HJ. et al. (2021) Identification of salivary proteins in the whitefly Bemisia tabaci by transcriptomic and LC-MS/MS analyses., Insect Sci, PMID 32757245
PXD016558 no publication (from MassIVE)Dataset title: EGFR inhibition triggers an adaptive response by co-opting antiviral signaling pathways in lung cancerPossible reference: Gong, K. et al. (2020) EGFR inhibition triggers an adaptive response by co-opting antiviral signaling pathways in lung cancer., Nat Cancer, PMID 33269343
PXD016536 Dataset with its publication pending (from PRIDE)Dataset title: Comparative phosphoproteome analysis to identify candidate phosphoproteins involved in blue light-induced brown film formation in Lentinula edodesPossible reference: Song, T. et al. (2020) Comparative phosphoproteome analysis to identify candidate phosphoproteins involved in blue light-induced brown film formation in Lentinula edodes., PeerJ, PMID 33384895
PXD016523 Dataset with its publication pending (from PRIDE)Dataset title: Precise temporal regulation of post-transcriptional repressors is required for an orderly Drosophila maternal-to-zygotic transitionPossible reference: Cao, WX. et al. (2020) Precise Temporal Regulation of Post-transcriptional Repressors Is Required for an Orderly Drosophila Maternal-to-Zygotic Transition., Cell Rep, PMID 32579915
PXD016487 Dataset with its publication pending (from PRIDE)Dataset title: ESCRT complexes in Giardia intestinalis (CHMP7)Possible reference: Pipaliya, SV. et al. (2021) Unexpected organellar locations of ESCRT machinery in Giardia intestinalis and complex evolutionary dynamics spanning the transition to parasitism in the lineage Fornicata., BMC Biol, PMID 34446013
PXD016448 Dataset with its publication pending (from PRIDE)Dataset title: ESCRT complexes in Giardia intestinalis (VPS25)Possible reference: Pipaliya, SV. et al. (2021) Unexpected organellar locations of ESCRT machinery in Giardia intestinalis and complex evolutionary dynamics spanning the transition to parasitism in the lineage Fornicata., BMC Biol, PMID 34446013
PXD016446 Dataset with its publication pending (from PRIDE)Dataset title: ESCRT complexes in Giardia intestinalis (VPS36A)Possible reference: Dutta, S. et al. (2015) Significantly Diverged Did2/Vps46 Orthologues from the Protozoan Parasite Giardia lamblia., Curr Microbiol, PMID 26068593
PXD016444 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic Analysis Reveals Key Proteins Involved in Ethylene-Induced Adventitious Root Development in Cucumber (Cucumis sativus L.)Possible reference: Lyu, J. et al. (2021) Proteomic analysis reveals key proteins involved in ethylene-induced adventitious root development in cucumber (Cucumis sativus L.)., PeerJ, PMID 33868797
PXD016442 Dataset with its publication pending (from PRIDE)Dataset title: ESCRT complexes in Giardia intestinalis (VPS20L)Possible reference: Dutta, S. et al. (2015) Significantly Diverged Did2/Vps46 Orthologues from the Protozoan Parasite Giardia lamblia., Curr Microbiol, PMID 26068593
PXD016409 Dataset with its publication pending (from jPOST)Dataset title: An identification of kinases which phosphorylates Ebola virus VP30 proteinPossible reference: Takamatsu, Y. et al. (2020) Serine-Arginine Protein Kinase 1 Regulates Ebola Virus Transcription., mBio, PMID 32098814
PXD016394 Dataset with its publication pending (from PRIDE)Dataset title: The GTPase Rab39a matures phagosomes into MHC-I antigen-presenting compartments.Possible reference: Cruz, FM. et al. (2020) The GTPase Rab39a promotes phagosome maturation into MHC-I antigen-presenting compartments., EMBO J, PMID 31821587
PXD016376 Dataset with its publication pending (from PRIDE)Dataset title: The Aspartic Protease Ddi1 Contributes to DNA-Protein Crosslink Repair in YeastPossible reference: Serbyn, N. et al. (2020) The Aspartic Protease Ddi1 Contributes to DNA-Protein Crosslink Repair in Yeast., Mol Cell, PMID 31902667
PXD016356 Dataset with its publication pending (from PRIDE)Dataset title: MuSC proteomic changes during agingPossible reference: Pehar, M. et al. (2016) Changes in Protein Expression and Lysine Acetylation Induced by Decreased Glutathione Levels in Astrocytes., Mol Cell Proteomics, PMID 26486419
PXD016352 no publication (from MassIVE)Dataset title: Quantitative Proteomic Comparison of Myofibroblasts Derived from Bone Marrow and CorneaPossible reference: Saikia, P. et al. (2020) Quantitative proteomic comparison of myofibroblasts derived from bone marrow and cornea., Sci Rep, PMID 33028893
PXD016304 Dataset with its publication pending (from PRIDE)Dataset title: Towards the molecular architecture of the peroxisomal receptor docking complexPossible reference: Lill, P. et al. (2020) Towards the molecular architecture of the peroxisomal receptor docking complex., Proc Natl Acad Sci U S A, PMID 33323485
PXD016260 Dataset with its publication pending (from jPOST)Dataset title: Absolute quantification of proteasome subunitsPossible reference: Sandberg, A. et al. (2012) Tumor proteomics by multivariate analysis on individual pathway data for characterization of vulvar cancer phenotypes., Mol Cell Proteomics, PMID 22499770
PXD016225 Dataset with its publication pending (from PRIDE)Dataset title: Trichodesmium field metaproteomesPossible reference: Walworth, NG. et al. (2022) Why Environmental Biomarkers Work: Transcriptome-Proteome Correlations and Modeling of Multistressor Experiments in the Marine Bacterium Trichodesmium., J Proteome Res, PMID 34855411
PXD016215 Dataset with its publication pending (from PRIDE)Dataset title: Profiling of a high mannose-type N-glycosylated lipase using hydrophilic interaction chromatography-mass spectrometryPossible reference: Gargano, AFG. et al. (2020) Profiling of a high mannose-type N-glycosylated lipase using hydrophilic interaction chromatography-mass spectrometry., Anal Chim Acta, PMID 32252907
PXD016212 no publication (from MassIVE)Dataset title: Long-lived Metabolic Enzymes in the Crystallin Lens Identified by Pulse-labeling of Mice and Mass SpectrometryPossible reference: Liu, P. et al. (2019) Long-lived metabolic enzymes in the crystalline lens identified by pulse-labeling of mice and mass spectrometry., Elife, PMID 31820737
PXD016194 Dataset with its publication pending (from jPOST)Dataset title: Improved host cell protein analysis in monoclonal antibody products through molecular weight cutoff enrichment Possible reference: Chen, IH. et al. (2020) Improved Host Cell Protein Analysis in Monoclonal Antibody Products through Molecular Weight Cutoff Enrichment., Anal Chem, PMID 31999105
PXD016177 Dataset with its publication pending (from PRIDE)Dataset title: Proteomics analysis of the second-generation merozoites of Eimeria tenella under Nitromezuril and Ethanamizuril stressPossible reference: Li, XY. et al. (2019) Proteomic analysis of the second-generation merozoites of Eimeria tenella under nitromezuril and ethanamizuril stress., Parasit Vectors, PMID 31852494
PXD016122 Dataset with its publication pending (from PRIDE)Dataset title: Influenza virus infection leads to global proteome remodeling of Streptococcus pneumoniaePossible reference: Platt, MP. et al. (2022) A multiomics analysis of direct interkingdom dynamics between influenza A virus and Streptococcus pneumoniae uncovers host-independent changes to bacterial virulence fitness., PLoS Pathog, PMID 36542660
PXD016114 D. Salvachúa, A.Z. Werner, I. Pardo, M. Michalska, B.A. Black, B.S. Donohoe, S. Haugen, R. Katahira, S. Notonier, K.J. Ramirez, S.O. Purvine, E.M. Zink, Paul Abraham, R.J. Giannone, S. Poudel, P. Laible, R.L. Hettich, G.T. Beckham. Outer membrane vesicles (from MassIVE)Dataset title: Outer membrane vesicles catabolize lignin-derived aromatic compounds in Pseudomonas putida KT2440Possible reference: Salvachúa, D. et al. (2020) Outer membrane vesicles catabolize lignin-derived aromatic compounds in Pseudomonas putida KT2440., Proc Natl Acad Sci U S A, PMID 32245809
PXD016101 no publication (from MassIVE)Dataset title: Mutant Tau Exosomes from Human iPSC NeuronsPossible reference: Wren, MC. et al. (2015) Frontotemporal dementia-associated N279K tau mutant disrupts subcellular vesicle trafficking and induces cellular stress in iPSC-derived neural stem cells., Mol Neurodegener, PMID 26373282
PXD016080 Dataset with its publication pending (from PRIDE)Dataset title: Genomic rewiring of Sox2 chromatin interaction network during differentiation of ESCs to postmitotic neuronsPossible reference: Bunina, D. et al. (2020) Genomic Rewiring of SOX2 Chromatin Interaction Network during Differentiation of ESCs to Postmitotic Neurons., Cell Syst, PMID 32553182
PXD016079 Dataset with its publication pending (from PRIDE)Dataset title: Comparative Differential Cuproproteomes of Rhodobacter capsulatusPossible reference: Selamoglu, N. et al. (2020) Comparative differential cuproproteomes of Rhodobacter capsulatus reveal novel copper homeostasis related proteins., Metallomics, PMID 32149296
PXD016071 Dataset with its publication pending (from iProX)Dataset title: Analysis of the serum peptidome associated with Toxoplasma gondii infectionPossible reference: Isenberg, J. et al. (2018) Peptidyl-prolyl cis-trans isomerase A - A novel biomarker of multi-episodic (recurrent) ocular toxoplasmosis., Exp Eye Res, PMID 30063883
PXD016053 Dataset with its publication pending (from PRIDE)Dataset title: The M-phase regulatory phosphatase PP2A-B55δ opposes protein kinase A on Arpp19 to initiate meiotic divisionPossible reference: Lemonnier, T. et al. (2021) The M-phase regulatory phosphatase PP2A-B55δ opposes protein kinase A on Arpp19 to initiate meiotic division., Nat Commun, PMID 33758202
PXD016030 Dataset with its publication pending (from iProX)Dataset title: Peptidomic Analysis Reveals Potential Contribution of the Placenta to PreeclampsiaPossible reference: Shangguan, Y. et al. (2021) Systematic proteomics analysis of lysine acetylation reveals critical features of placental proteins in pregnant women with preeclampsia., J Cell Mol Med, PMID 34697885
PXD015996 Dataset with its publication pending (from PRIDE)Dataset title: Aberrant astrocyte protein secretion contributes to altered neuronal development in diverse disordersPossible reference: Caldwell, ALM. et al. (2022) Aberrant astrocyte protein secretion contributes to altered neuronal development in multiple models of neurodevelopmental disorders., Nat Neurosci, PMID 36042312
PXD015973 no publication (from MassIVE)Dataset title: Development of an updated genome-scale metabolic model of Clostridium thermocellum and its application for integration of multi-omics datasetsPossible reference: Garcia, S. et al. (2020) Development of a Genome-Scale Metabolic Model of Clostridium thermocellum and Its Applications for Integration of Multi-Omics Datasets and Computational Strain Design., Front Bioeng Biotechnol, PMID 32974289
PXD015971 no publication (from MassIVE)Dataset title: Mapping microbial bile acid transformations along the murine gutPossible reference: Marion, S. et al. (2020) Biogeography of microbial bile acid transformations along the murine gut., J Lipid Res, PMID 32661017
PXD015918 no publication (from MassIVE)Dataset title: Mapping the proximity interaction network of the RHO-family GTPases reveals signalling pathways and regulatory mechanismsPossible reference: Bagci, H. et al. (2020) Mapping the proximity interaction network of the Rho-family GTPases reveals signalling pathways and regulatory mechanisms., Nat Cell Biol, PMID 31871319
PXD015915 no publication (from MassIVE)Dataset title: Mass spectrometry-based proteomics reveals potential roles of NEK9 and MAP2K4 in resistance to PI3K inhibitors in triple negative breast cancerPossible reference: Mundt, F. et al. (2018) Mass Spectrometry-Based Proteomics Reveals Potential Roles of NEK9 and MAP2K4 in Resistance to PI3K Inhibition in Triple-Negative Breast Cancers., Cancer Res, PMID 29472518
PXD015911 no publication (from MassIVE)Dataset title: Proteogenomic Integration Reveals Therapeutic Targets in Breast Cancer XenograftsPossible reference: Huang, KL. et al. (2017) Proteogenomic integration reveals therapeutic targets in breast cancer xenografts., Nat Commun, PMID 28348404
PXD015910 no publication (from MassIVE)Dataset title: Proteogenomics Connects Somatic Mutations to Signalling in Breast CancerPossible reference: Mertins, P. et al. (2016) Proteogenomics connects somatic mutations to signalling in breast cancer., Nature, PMID 27251275
PXD015909 no publication (from MassIVE)Dataset title: Integrated bottom-up and top-down proteomics of patient-derived breast tumor xenograftsPossible reference: Ntai, I. et al. (2016) Integrated Bottom-Up and Top-Down Proteomics of Patient-Derived Breast Tumor Xenografts., Mol Cell Proteomics, PMID 26503891
PXD015908 no publication (from MassIVE)Dataset title: Integrated Proteogenomic Characterization of Human High-Grade Serous Ovarian CancerPossible reference: Zhang, H. et al. (2016) Integrated Proteogenomic Characterization of Human High-Grade Serous Ovarian Cancer., Cell, PMID 27372738
PXD015905 no publication (from MassIVE)Dataset title: Proteogenomic characterization of human colon and rectal cancerPossible reference: Zhang, B. et al. (2014) Proteogenomic characterization of human colon and rectal cancer., Nature, PMID 25043054
PXD015903 no publication (from MassIVE)Dataset title: CPTAC, TCGA Cancer Proteome Study of Ovarian TissuePossible reference: Rudnick, PA. et al. (2016) A Description of the Clinical Proteomic Tumor Analysis Consortium (CPTAC) Common Data Analysis Pipeline., J Proteome Res, PMID 26860878
PXD015901 no publication (from MassIVE)Dataset title: CPTAC, TCGA Cancer Proteome Study of Breast TissuePossible reference: Rudnick, PA. et al. (2016) A Description of the Clinical Proteomic Tumor Analysis Consortium (CPTAC) Common Data Analysis Pipeline., J Proteome Res, PMID 26860878
PXD015877 Dataset with its publication pending (from PRIDE)Dataset title: The length of a ubiquitin chain is a general determinant for selective recognition by ubiquitin-binding proteins.Possible reference: Lutz, J. et al. (2020) The Length of a Ubiquitin Chain: A General Factor for Selective Recognition by Ubiquitin-Binding Proteins., Angew Chem Int Ed Engl, PMID 32301549
PXD015794 Dataset with its publication pending (from PRIDE)Dataset title: Identification of chloroplast envelope proteins with critical importance for cold acclimationPossible reference: Trentmann, O. et al. (2020) Identification of Chloroplast Envelope Proteins with Critical Importance for Cold Acclimation., Plant Physiol, PMID 31932409
PXD015767 Dataset with its publication pending (from PRIDE)Dataset title: SMOC1 as a therapeutic target for type 2 diabetesPossible reference: Montgomery, MK. et al. (2020) SMOC1 is a glucose-responsive hepatokine and therapeutic target for glycemic control., Sci Transl Med, PMID 32878981
PXD015755 Dataset with its publication pending (from jPOST)Dataset title: MYCN and metabolic reprogramming in neuroblastoma Possible reference: Zirath, H. et al. (2013) MYC inhibition induces metabolic changes leading to accumulation of lipid droplets in tumor cells., Proc Natl Acad Sci U S A, PMID 23733953
PXD015727 Dataset with its publication pending (from PRIDE)Dataset title: Tissue-infiltrating macrophages mediate an exosome-based metabolic reprogramming upon DNA damagePossible reference: Goulielmaki, E. et al. (2020) Tissue-infiltrating macrophages mediate an exosome-based metabolic reprogramming upon DNA damage., Nat Commun, PMID 31896748
PXD015690 Dataset with its publication pending (from PRIDE)Dataset title: Integrated quantitative analysis of the human brain proteome and phosphoproteome in Alzheimer's diseasePossible reference: Zahid, S. et al. (2012) Phosphoproteome profiling of substantia nigra and cortex regions of Alzheimer's disease patients., J Neurochem, PMID 22436009
PXD015657 Dataset with its publication pending (from PRIDE)Dataset title: Unraveling the MAX2 Protein Network in Arabidopsis thaliana: Identification of the Protein Phosphatase PAPP5 as a Novel MAX2 InteractorPossible reference: Struk, S. et al. (2021) Unraveling the MAX2 Protein Network in Arabidopsis thaliana: Identification of the Protein Phosphatase PAPP5 as a Novel MAX2 Interactor., Mol Cell Proteomics, PMID 33372050
PXD015619 Dataset with its publication pending (from PRIDE)Dataset title: Cerebrospinal fluid ecto-GPR37 in Parkinson’s diseasePossible reference: Morató, X. et al. (2021) Ecto-GPR37: a potential biomarker for Parkinson's disease., Transl Neurodegener, PMID 33637132
PXD015584 no publication (from MassIVE)Dataset title: Quantitative Analysis of Global Protein Stability Rates in TissuesPossible reference: McClatchy, DB. et al. (2020) Quantitative analysis of global protein stability rates in tissues., Sci Rep, PMID 32994440
PXD015579 Dataset with its publication pending (from PRIDE)Dataset title: The cytosolic DNA sensor cGAS recognizes Neutrophil Extracellular TrapsPossible reference: Apel, F. et al. (2021) The cytosolic DNA sensor cGAS recognizes neutrophil extracellular traps., Sci Signal, PMID 33688080
PXD015525 Dataset with its publication pending (from PRIDE)Dataset title: HipBA toxin-antitoxin system Caulobacter crescentus.Possible reference: Huang, CY. et al. (2020) hipBA toxin-antitoxin systems mediate persistence in Caulobacter crescentus., Sci Rep, PMID 32071324
PXD015506 Dataset with its publication pending (from PRIDE)Dataset title: In vitro expanded and activated polyclonal γδ memory T cells for treatment of cancerPossible reference: Polito, VA. et al. (2019) Universal Ready-to-Use Immunotherapeutic Approach for the Treatment of Cancer: Expanded and Activated Polyclonal γδ Memory T Cells., Front Immunol, PMID 31824502
PXD015488 Dataset with its publication pending (from PRIDE)Dataset title: Gcn5 and Esa1 function as histone crotonyltransferases to regulate crotonylation-dependent transcriptionPossible reference: Kollenstart, L. et al. (2019) Gcn5 and Esa1 function as histone crotonyltransferases to regulate crotonylation-dependent transcription., J Biol Chem, PMID 31699900
PXD015471 Dataset with its publication pending (from PRIDE)Dataset title: The mRNA-binding proteome of proliferating and differentiated muscle cellsPossible reference: Hiller, M. et al. (2020) The mRNA Binding Proteome of Proliferating and Differentiated Muscle Cells., Genomics Proteomics Bioinformatics, PMID 33338663
PXD015469 Dataset with its publication pending (from PRIDE)Dataset title: Proteomics Analysis of the Mechanism of AMP-17 against Candida albicansPossible reference: Yang, LB. et al. (2022) TMT-based quantitative proteomic analysis of the effects of novel antimicrobial peptide AMP-17 against Candida albicans., J Proteomics, PMID 34606990
PXD015456 Dataset with its publication pending (from PRIDE)Dataset title: Stress signaling and cellular proliferation reverse the effects of mitochondrial mistranslationPossible reference: Ferreira, N. et al. (2019) Stress signaling and cellular proliferation reverse the effects of mitochondrial mistranslation., EMBO J, PMID 31721250
PXD015453 Dataset with its publication pending (from PRIDE)Dataset title: CDK13 cooperates with CDK12 to control global RNA polymerase II processivityPossible reference: Fan, Z. et al. (2020) CDK13 cooperates with CDK12 to control global RNA polymerase II processivity., Sci Adv, PMID 32917631
PXD015442 Dataset with its publication pending (from PRIDE)Dataset title: Rat plasma proteomics using single-shot proteomicsPossible reference: Gaun, A. et al. (2021) Automated 16-Plex Plasma Proteomics with Real-Time Search and Ion Mobility Mass Spectrometry Enables Large-Scale Profiling in Naked Mole-Rats and Mice., J Proteome Res, PMID 33499602
PXD015434 Dataset with its publication pending (from PRIDE)Dataset title: PROTEOMIC RESPONSE OF EARLY JUVENILE PACIFIC OYSTERS TO TEMPERATUREPossible reference: Crandall, G. et al. (2022) Proteomic response of early juvenile Pacific oysters (Crassostrea gigas) to temperature., PeerJ, PMID 36262416
PXD015375 Dataset with its publication pending (from PRIDE)Dataset title: Extracellular vesicles from human plasma and serum are carriers of extravesicular cargo - implications for biomarker discoveryPossible reference: Palviainen, M. et al. (2020) Extracellular vesicles from human plasma and serum are carriers of extravesicular cargo-Implications for biomarker discovery., PLoS One, PMID 32813744
PXD015364 Dataset with its publication pending (from PRIDE)Dataset title: A label-free shotgun proteomics analysis of macadamia nutPossible reference: Rost, J. et al. (2020) A label-free shotgun proteomics analysis of macadamia nut., Food Res Int, PMID 32036921
PXD015337 Dataset with its publication pending (from PRIDE)Dataset title: Therapeutic miR-132 inhibition reverses heart failurePossible reference: Ucar, A. et al. (2012) The miRNA-212/132 family regulates both cardiac hypertrophy and cardiomyocyte autophagy., Nat Commun, PMID 23011132
PXD015333 no publication (from MassIVE)Dataset title: The anti-MRSA compound KCR inhibits protein synthesis in Staphylococcus aureus Possible reference: Carruthers, NJ. et al. (2020) The anti-MRSA compound 3-O-alpha-L-(2″,3″-di-p-coumaroyl)rhamnoside (KCR) inhibits protein synthesis in Staphylococcus aureus., J Proteomics, PMID 31629958
PXD015320 Dataset with its publication pending (from PRIDE)Dataset title: Proteostasis network alteration in lysosomal storage disorders: insights from the mouse model of Krabbe diseaseProteostasis network alteration in lysosomal storage disorders: insights from the mouse model of Krabbe diseaseProteostasis network alteration iPossible reference: Landi, C. et al. (2020) Proteostasis network alteration in lysosomal storage disorders: Insights from the mouse model of Krabbe disease., J Neurosci Res, PMID 31797419
PXD015319 Dataset with its publication pending (from PRIDE)Dataset title: Peptide-based quorum sensing systems in Paenibacillus polymyxaPossible reference: Voichek, M. et al. (2020) Peptide-based quorum sensing systems in Paenibacillus polymyxa., Life Sci Alliance, PMID 32764104
PXD015314 Dataset with its publication pending (from iProX)Dataset title: DPHL: A pan-human protein mass spectrometry library for robust biomarker discovery using Data-Independent Acquisition and Parallel Reaction MonitoringPossible reference: Zhu, T. et al. (2020) DPHL: A DIA Pan-human Protein Mass Spectrometry Library for Robust Biomarker Discovery., Genomics Proteomics Bioinformatics, PMID 32795611
PXD015291 no publication (from MassIVE)Dataset title: Comprehensive spectral library from the pathogenic bacterium Streptococcus pneumoniae with focus on phosphoproteinsPossible reference: Hentschker, C. et al. (2020) Comprehensive Spectral Library from the Pathogenic Bacterium Streptococcus pneumoniae with Focus on Phosphoproteins., J Proteome Res, PMID 32154730
PXD015281 Dataset with its publication pending (from PRIDE)Dataset title: Phosphoproteomics across the yeast life cyclePossible reference: Martínez-Montañés, F. et al. (2020) Phosphoproteomic Analysis across the Yeast Life Cycle Reveals Control of Fatty Acyl Chain Length by Phosphorylation of the Fatty Acid Synthase Complex., Cell Rep, PMID 32783946
PXD015262 no publication (from MassIVE)Dataset title: ClpX, activated by SSB, is required for DNA replication in Mycobacterium tuberculosisPossible reference: Kester, JC. et al. (2021) ClpX Is Essential and Activated by Single-Strand DNA Binding Protein in Mycobacteria., J Bacteriol, PMID 33229461
PXD015257 no publication (from MassIVE)Dataset title: A Triple Knockout (TKO) Proteomics Standard for Diagnosing Ion Interference in Isobaric Labeling ExperimentsPossible reference: Paulo, JA. et al. (2016) A Triple Knockout (TKO) Proteomics Standard for Diagnosing Ion Interference in Isobaric Labeling Experiments., J Am Soc Mass Spectrom, PMID 27400695
PXD015207 Dataset with its publication pending (from PRIDE)Dataset title: Discovery of a Small Molecule Degrader that Sustains pan-AKT Degradation and Downstream Signaling EffectsPossible reference: You, I. et al. (2020) Discovery of an AKT Degrader with Prolonged Inhibition of Downstream Signaling., Cell Chem Biol, PMID 31859249
PXD015200 Dataset with its publication pending (from PRIDE)Dataset title: N-terminomics/TAILS profiling of macrophages after chemical inhibition of legumainPossible reference: Anderson, BM. et al. (2020) N-Terminomics/TAILS Profiling of Macrophages after Chemical Inhibition of Legumain., Biochemistry, PMID 31774660
PXD015165 Dataset with its publication pending (from PRIDE)Dataset title: Next-generation diagnostic biomarkers for vivax malariaPossible reference: Jang, IK. et al. (2020) Multiplex Human Malaria Array: Quantifying Antigens for Malaria Rapid Diagnostics., Am J Trop Med Hyg, PMID 32189616
PXD015150 no publication (from MassIVE)Dataset title: Induced Systemic Effects of Engineering the Cell Membrane Composition in Bacillus subtilisPossible reference: Nickels, JD. et al. (2020) Impact of Fatty-Acid Labeling of Bacillus subtilis Membranes on the Cellular Lipidome and Proteome., Front Microbiol, PMID 32499768
PXD015148 Dataset with its publication pending (from PRIDE)Dataset title: Rescuing over-activated microglia by acetaminophen treatment restores cognitive performance in the Dp(16) mouse model of Down Syndrome.Possible reference: Pinto, B. et al. (2020) Rescuing Over-activated Microglia Restores Cognitive Performance in Juvenile Animals of the Dp(16) Mouse Model of Down Syndrome., Neuron, PMID 33027640
PXD015117 Dataset with its publication pending (from PRIDE)Dataset title: Cerebrospinal fluid proteomic profiling in nusinersen-treated patients with spinal muscular atrophyPossible reference: Kessler, T. et al. (2020) Cerebrospinal fluid proteomic profiling in nusinersen-treated patients with spinal muscular atrophy., J Neurochem, PMID 31903607
PXD015113 Dataset with its publication pending (from PRIDE)Dataset title: Rescuing over-activated microglia by acetaminophen treatment restores cognitive performance in the Dp(16) mouse model of Down Syndrome.Possible reference: Pinto, B. et al. (2020) Rescuing Over-activated Microglia Restores Cognitive Performance in Juvenile Animals of the Dp(16) Mouse Model of Down Syndrome., Neuron, PMID 33027640
PXD015100 Dataset with its publication pending (from PRIDE)Dataset title: The kinetoplastid outer kinetochorePossible reference: D'Archivio, S. et al. (2017) Trypanosome outer kinetochore proteins suggest conservation of chromosome segregation machinery across eukaryotes., J Cell Biol, PMID 28034897
PXD015050 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic and phosphoproteomic analyses of protein PKA catalytic-alpha-null mpkCCD cells and PKA catalytic-beta-null mpkCCD cells.Possible reference: Limbutara, K. et al. (2019) Phosphorylation Changes in Response to Kinase Inhibitor H89 in PKA-Null Cells., Sci Rep, PMID 30808967
PXD015037 Dataset with its publication pending (from PRIDE)Dataset title: Development of Photocrosslinking Probes Based on Huwentoxin-IV to Map the Site of Interaction on Nav1.7Possible reference: Tzakoniati, F. et al. (2020) Development of Photocrosslinking Probes Based on Huwentoxin-IV to Map the Site of Interaction on Nav1.7., Cell Chem Biol, PMID 31732432
PXD015016 no publication (from MassIVE)Dataset title: Dynamic incorporation of histone H3 variants into chromatin is essential for acquisition of aggressive traits and metastatic colonizationPossible reference: Gomes, AP. et al. (2019) Dynamic Incorporation of Histone H3 Variants into Chromatin Is Essential for Acquisition of Aggressive Traits and Metastatic Colonization., Cancer Cell, PMID 31564638
PXD015015 Dataset with its publication pending (from PRIDE)Dataset title: Down-regulation of collagen hydroxylation in colorectal liver metastasisPossible reference: van Huizen, NA. et al. (2020) Down-Regulation of Collagen Hydroxylation in Colorectal Liver Metastasis., Front Oncol, PMID 33117689
PXD014995 Dataset with its publication pending (from PRIDE)Dataset title: The Function of Ectopic ATP Synthase in Extracellular Vesicles.Possible reference: Dong, Z. et al. (2022) Exosomal miR-181a-2-3p derived from citreoviridin-treated hepatocytes activates hepatic stellate cells trough inducing mitochondrial calcium overload., Chem Biol Interact, PMID 35305974
PXD014988 Dataset with its publication pending (from PRIDE)Dataset title: Long non-coding RNA HOTTIP promotes CCL3 expression and induces cartilage degradation by sponging miR-455-3pPossible reference: Mao, G. et al. (2019) Long Non-coding RNA HOTTIP Promotes CCL3 Expression and Induces Cartilage Degradation by Sponging miR-455-3p., Front Cell Dev Biol, PMID 31508417
PXD014983 Dataset with its publication pending (from iProX)Dataset title: A technology to capture DNA binding proteins based on biolistic transformationPossible reference: Wang, Z. et al. (2023) A DNA-binding protein capture technology that purifies proteins by directly isolating the target DNA., Plant Sci, PMID 37467789
PXD014966 Dataset with its publication pending (from PRIDE)Dataset title: Quantitative and dynamic catalogs of proteins released during apoptotic and necroptotic cell deathPossible reference: Tanzer, MC. et al. (2020) Quantitative and Dynamic Catalogs of Proteins Released during Apoptotic and Necroptotic Cell Death., Cell Rep, PMID 31995763
PXD014965 no publication (from MassIVE)Dataset title: Proteomic and metabolomic analyses of Mahonia bealei under UV-B and dark treatmentsPossible reference: Zhu, W. et al. (2021) Combined ultraviolet and darkness regulation of medicinal metabolites in Mahonia bealei revealed by proteomics and metabolomics., J Proteomics, PMID 33352312
PXD014964 no publication (from MassIVE)Dataset title: Proteomic profiling of Mycobacterium tuberculosis culture filtrate identifies novel O-glycosylated proteinsPossible reference: Tucci, P. et al. (2020) Integrative proteomic and glycoproteomic profiling of Mycobacterium tuberculosis culture filtrate., PLoS One, PMID 32126063
PXD014963 no publication (from MassIVE)Dataset title: The Mitochondrial Protease, Neurolysin, Regulates Respiratory Chain Supercomplex Formation and is Necessary for AML ViabilityPossible reference: Mirali, S. et al. (2020) The mitochondrial peptidase, neurolysin, regulates respiratory chain supercomplex formation and is necessary for AML viability., Sci Transl Med, PMID 32269163
PXD014958 Dataset with its publication pending (from PRIDE)Dataset title: Slow growing behavior in African trypanosomes during adipose tissue colonizationPossible reference: Trindade, S. et al. (2022) Slow growing behavior in African trypanosomes during adipose tissue colonization., Nat Commun, PMID 36481558
PXD014948 Dataset with its publication pending (from PRIDE)Dataset title: From coarse to fine: The absolute Escherichia coli proteome under diverse growth conditionsPossible reference: Mori, M. et al. (2021) From coarse to fine: the absolute Escherichia coli proteome under diverse growth conditions., Mol Syst Biol, PMID 34032011
PXD014905 Dataset with its publication pending (from jPOST)Dataset title: NC Table S3Possible reference: Wingrove, JA. et al. (2018) Peripheral blood gene expression signatures which reflect smoking and aspirin exposure are associated with cardiovascular events., BMC Med Genomics, PMID 29329538
PXD014904 Dataset with its publication pending (from jPOST)Dataset title: NC Table S4Possible reference: Radusky, LG. et al. (2015) An integrated structural proteomics approach along the druggable genome of Corynebacterium pseudotuberculosis species for putative druggable targets., BMC Genomics, PMID 26041381
PXD014886 Dataset with its publication pending (from PRIDE)Dataset title: Mitochondrial reprogramming using dCas9 boosts glia-to-neuron conversionPossible reference: Russo, GL. et al. (2021) CRISPR-Mediated Induction of Neuron-Enriched Mitochondrial Proteins Boosts Direct Glia-to-Neuron Conversion., Cell Stem Cell, PMID 33202244
PXD014826 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic analysis of donor and cardiomyopathy pre-mortem human heartsPossible reference: Hunter, B. et al. (2024) Proteomic and metabolomic analyses of the human adult myocardium reveal ventricle-specific regulation in end-stage cardiomyopathies., Commun Biol, PMID 39702518
PXD014823 Dataset with its publication pending (from PRIDE)Dataset title: Global proteomic profiling of meningioma cohortPossible reference: Papaioannou, MD. et al. (2019) Proteomic analysis of meningiomas reveals clinically distinct molecular patterns., Neuro Oncol, PMID 31077268
PXD014817 Dataset with its publication pending (from iProX)Dataset title: TRIB3 Supports Breast Cancer Stemness by Suppressing FOXO1 Degradation and Enhancing SOX2 TranscriptionPossible reference: Yu, JM. et al. (2019) TRIB3 supports breast cancer stemness by suppressing FOXO1 degradation and enhancing SOX2 transcription., Nat Commun, PMID 31844113
PXD014805 no publication (from MassIVE)Dataset title: Extended snake venomics on the newly discovered subspecies Vipera anatolica senlikiPossible reference: Hempel, BF. et al. (2020) Extended Snake Venomics by Top-Down In-Source Decay: Investigating the Newly Discovered Anatolian Meadow Viper Subspecies, Vipera anatolica senliki., J Proteome Res, PMID 32073270
PXD014798 Dataset with its publication pending (from PRIDE)Dataset title: Epigenetic reprogramming shapes the cellular landscape of schwannomaPossible reference: Liu, SJ. et al. (2024) Epigenetic reprogramming shapes the cellular landscape of schwannoma., Nat Commun, PMID 38216587
PXD014797 Dataset with its publication pending (from PRIDE)Dataset title: Insight into the Human Pathodegradome of the V8 protease from Staphylococcus aureusPossible reference: Frey, AM. et al. (2021) Insight into the human pathodegradome of the V8 protease from Staphylococcus aureus., Cell Rep, PMID 33826899
PXD014791 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic cellular signatures of kinase inhibitor-induced cardiotoxicityPossible reference: Xiong, Y. et al. (2022) Proteomic cellular signatures of kinase inhibitor-induced cardiotoxicity., Sci Data, PMID 35058449
PXD014787 Dataset with its publication pending (from PRIDE)Dataset title: Gene regulatory networks of kiwifruit response to Pseudomonas syringae pv. actinidiaePossible reference: Wang, Z. et al. (2017) Whole transcriptome sequencing of Pseudomonas syringae pv. actinidiae-infected kiwifruit plants reveals species-specific interaction between long non-coding RNA and coding genes., Sci Rep, PMID 28687784
PXD014775 no publication (from MassIVE)Dataset title: Extracellular matrix hydrogel derived from decellularized tissues enables endodermal organoid culturePossible reference: Giobbe, GG. et al. (2019) Extracellular matrix hydrogel derived from decellularized tissues enables endodermal organoid culture., Nat Commun, PMID 31827102
PXD014764 Dataset with its publication pending (from PRIDE)Dataset title: eIF4A2 drives repression of translation at initiation by Ccr4-Not through purine-rich motifs in the 5’UTR.Possible reference: Wilczynska, A. et al. (2019) eIF4A2 drives repression of translation at initiation by Ccr4-Not through purine-rich motifs in the 5'UTR., Genome Biol, PMID 31791371
PXD014724 no publication (from MassIVE)Dataset title: Molecular and immunological interrogation of a live-attenuated enterotoxigenic Escherichia coli vaccine highlights features unique to wild type infectionPossible reference: Chakraborty, S. et al. (2019) Interrogation of a live-attenuated enterotoxigenic Escherichia coli vaccine highlights features unique to wild-type infection., NPJ Vaccines, PMID 31482013
PXD014713 Dataset with its publication pending (from PRIDE)Dataset title: Chemical labeling for fine mapping of IgG N-glycosylation by ETD-MSPossible reference: Yang, L. et al. (2019) Chemical labeling for fine mapping of IgG N-glycosylation by ETD-MS., Chem Sci, PMID 32110292
PXD014694 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic analysis of extracellular vesicles derived from platelet concentrates treated with Mirasol® identifies biomarkers of platelet storage lesionPossible reference: Hermida-Nogueira, L. et al. (2020) Proteomic analysis of extracellular vesicles derived from platelet concentrates treated with Mirasol® identifies biomarkers of platelet storage lesion., J Proteomics, PMID 31605789
PXD014666 Dataset with its publication pending (from PRIDE)Dataset title: Decoding the genomic basis of osteoarthritisPossible reference: Rahmioglu, N. et al. (2023) The genetic basis of endometriosis and comorbidity with other pain and inflammatory conditions., Nat Genet, PMID 36914876
PXD014652 Dataset with its publication pending (from PRIDE)Dataset title: Multifunctional temozolomide-loaded lipid superparamagnetic nanovectors: dual targeting and disintegration of glioblastoma spheroids by synergic chemotherapy and hyperthermia treatmentPossible reference: Marino, A. et al. (2019) Multifunctional temozolomide-loaded lipid superparamagnetic nanovectors: dual targeting and disintegration of glioblastoma spheroids by synergic chemotherapy and hyperthermia treatment., Nanoscale, PMID 31663592
PXD014644 Dataset with its publication pending (from PRIDE)Dataset title: Role for ribosomal quality control in sampling proteins for MHC class I-mediated antigen presentationPossible reference: Trentini, DB. et al. (2020) Role for ribosome-associated quality control in sampling proteins for MHC class I-mediated antigen presentation., Proc Natl Acad Sci U S A, PMID 32047030
PXD014630 Dataset with its publication pending (from PRIDE)Dataset title: Microbial remineralization of particulate organic carbon in the ocean’s twilight zonePossible reference: Kong, LF. et al. (2021) Metaproteomics Reveals Similar Vertical Distribution of Microbial Transport Proteins in Particulate Organic Matter Throughout the Water Column in the Northwest Pacific Ocean., Front Microbiol, PMID 33841356
PXD014579 Dataset with its publication pending (from PRIDE)Dataset title: Cell-derived extracellular vesicles can be used as a biomarker reservoir for glioblastoma tumor subtypingPossible reference: Lane, R. et al. (2019) Cell-derived extracellular vesicles can be used as a biomarker reservoir for glioblastoma tumor subtyping., Commun Biol, PMID 31453379
PXD014476 no publication (from MassIVE)Dataset title: A reference map of the human proinsulin biosynthetic interaction networkPossible reference: Tran, DT. et al. (2020) Unbiased Profiling of the Human Proinsulin Biosynthetic Interaction Network Reveals a Role for Peroxiredoxin 4 in Proinsulin Folding., Diabetes, PMID 32457219
PXD014463 no publication (from MassIVE)Dataset title: Defining how Pak1 regulates cell polarity and cell division in fission yeastPossible reference: Magliozzi, JO. et al. (2020) Fission yeast Pak1 phosphorylates anillin-like Mid1 for spatial control of cytokinesis., J Cell Biol, PMID 32421151
PXD014453 no publication (from MassIVE)Dataset title: Revealing dynamic protein acetylation across subcellular compartmentsPossible reference: Baeza, J. et al. (2020) Revealing Dynamic Protein Acetylation across Subcellular Compartments., J Proteome Res, PMID 32290654
PXD014425 Dataset with its publication pending (from PRIDE)Dataset title: Silver and platinum nanoparticles synergyPossible reference: Ranpariya, B. et al. (2020) Antimicrobial Synergy of Silver-Platinum Nanohybrids With Antibiotics., Front Microbiol, PMID 33597929
PXD014368 Dataset with its publication pending (from PRIDE)Dataset title: Discovery of TBC1D7 as a potential driver for melanoma cell invasion.Possible reference: Qi, TF. et al. (2020) Discovery of TBC1D7 as a Potential Driver for Melanoma Cell Invasion., Proteomics, PMID 32510182
PXD014323 Dataset with its publication pending (from PRIDE)Dataset title: Host cholesterol modulates the generation and enrichment of persister population during Mycobacterium tuberculosis infection.Possible reference: Talwar, S. et al. (2020) Role of VapBC12 Toxin-Antitoxin Locus in Cholesterol-Induced Mycobacterial Persistence., mSystems, PMID 33323416
PXD014315 Dataset with its publication pending (from PRIDE)Dataset title: Active thrombin is produced by intestinal epithelium to control mucosal biofilmPossible reference: Motta, JP. et al. (2019) Active thrombin produced by the intestinal epithelium controls mucosal biofilms., Nat Commun, PMID 31324782
PXD014280 no publication (from MassIVE)Dataset title: Profiling the surfaceome identifies therapeutic targets for cells with hyperactive mTORC1 signalingPossible reference: Wei, J. et al. (2020) Profiling the Surfaceome Identifies Therapeutic Targets for Cells with Hyperactive mTORC1 Signaling., Mol Cell Proteomics, PMID 31792071
PXD014210 no publication (from MassIVE)Dataset title: Proteomic analysis reveals that topoisomerase 2A is associated with defective sperm head morphology Possible reference: Netherton, J. et al. (2020) Proteomic Analysis Reveals that Topoisomerase 2A is Associated with Defective Sperm Head Morphology., Mol Cell Proteomics, PMID 31848259
PXD014209 Dataset with its publication pending (from iProX)Dataset title: Brown Algae Extracts inhibit lung cancer cell invasion and migrationPossible reference: Wang, CH. et al. (2019) Dieckol inhibits non-small-cell lung cancer cell proliferation and migration by regulating the PI3K/AKT signaling pathway., J Biochem Mol Toxicol, PMID 31291034
PXD014206 Dataset with its publication pending (from jPOST)Dataset title: In-gel digestion protocol to analyze proteome of Medaka after acute ionizing radiation exposurePossible reference: Pérez-Gélvez, Y. et al. (2019) An Effective Protocol for Proteome Analysis of Medaka (Oryzias latipes) after Acute Exposure to Ionizing Radiation., Methods Protoc, PMID 31366181
PXD014181 no publication (from MassIVE)Dataset title: HSV1_Quantitative_Proteomic_AnalysisPossible reference: Cui, YH. et al. (2019) Quantitative proteomic analysis of human corneal epithelial cells infected with HSV-1., Exp Eye Res, PMID 31085182
PXD014162 no publication (from MassIVE)Dataset title: The purine biosynthesis regulator PurR moonlights as a virulence regulator in Staphylococcus aureusPossible reference: Sause, WE. et al. (2019) The purine biosynthesis regulator PurR moonlights as a virulence regulator in Staphylococcus aureus., Proc Natl Acad Sci U S A, PMID 31217288
PXD014156 Dataset with its publication pending (from PRIDE)Dataset title: Using Proteomics for an Insight into the Performance of Activated SludgePossible reference: Xing, M. et al. (2016) Highlighting earthworm contribution in uplifting biochemical response for organic matter decomposition during vermifiltration processing sewage sludge: Insights from proteomics., Bioresour Technol, PMID 27287202
PXD014155 Dataset with its publication pending (from PRIDE)Dataset title: Evaluation of in-house stabilized trypsinPossible reference: González-López, NM. et al. (2023) In-house standards derived from doping peptides: Enzymatic and serum stability and degradation profile of GHRP and GHRH-related peptides., Biomed Chromatogr, PMID 37688464
PXD014128 no publication (from MassIVE)Dataset title: High fat diet response metaproteomicsPossible reference: Clavel, T. et al. (2014) Intestinal microbiota in metabolic diseases: from bacterial community structure and functions to species of pathophysiological relevance., Gut Microbes, PMID 25003516
PXD014127 no publication (from MassIVE)Dataset title: Primary human natural killer cells retain proinflammatory IgG1 at the cell surface and express CD16a glycoforms with donor-dependent variabilityPossible reference: Patel, KR. et al. (2019) Primary Human Natural Killer Cells Retain Proinflammatory IgG1 at the Cell Surface and Express CD16a Glycoforms with Donor-dependent Variability., Mol Cell Proteomics, PMID 31467031
PXD014106 no publication (from MassIVE)Dataset title: Data files for Various HMGB1 proteasesPossible reference: Ning, W. et al. (2021) Shared Molecular Mechanisms between Atherosclerosis and Periodontitis by Analyzing the Transcriptomic Alterations of Peripheral Blood Monocytes., Comput Math Methods Med, PMID 34899963
PXD014055 Dataset with its publication pending (from PRIDE)Dataset title: Improving identification of in-organello protein-protein interactions using an affinity-enrichable, isotopically-coded, and mass spectrometry-cleavable chemical crosslinkerPossible reference: Makepeace, KAT. et al. (2020) Improving Identification of In-organello Protein-Protein Interactions Using an Affinity-enrichable, Isotopically Coded, and Mass Spectrometry-cleavable Chemical Crosslinker., Mol Cell Proteomics, PMID 32051233
PXD014034 Dataset with its publication pending (from PRIDE)Dataset title: mTOR-regulated phosphorylation of electrogenic sodium bicarbonate cotransporter 1, NBCe1, at S255-257 regulates NBCe1 functional expression in mouse cortical astrocytePossible reference: Khakipoor, S. et al. (2019) Functional expression of electrogenic sodium bicarbonate cotransporter 1 (NBCe1) in mouse cortical astrocytes is dependent on S255-257 and regulated by mTOR., Glia, PMID 31318482
PXD014018 no publication (from MassIVE)Dataset title: Quantitative proteomic analyses of Chlorella vulgaris NJ-7 and UTEX259Possible reference: Wang, Y. et al. (2020) Early Stage Adaptation of a Mesophilic Green Alga to Antarctica: Systematic Increases in Abundance of Enzymes and LEA Proteins., Mol Biol Evol, PMID 31794607
PXD013979 Dataset with its publication pending (from PRIDE)Dataset title: Rapid and culture free identification of Francisella in hare carcasses by high-resolution mass spectrometryPossible reference: Witt, N. et al. (2020) Rapid and Culture Free Identification of Francisella in Hare Carcasses by High-Resolution Tandem Mass Spectrometry Proteotyping., Front Microbiol, PMID 32457701
PXD013961 Dataset with its publication pending (from PRIDE)Dataset title: Proteome of L-carnitine-grown Eubacterium limosum ATCC 8486Possible reference: Picking, JW. et al. (2019) MtpB, a member of the MttB superfamily from the human intestinal acetogen Eubacterium limosum, catalyzes proline betaine demethylation., J Biol Chem, PMID 31341018
PXD013922 Dataset with its publication pending (from PRIDE)Dataset title: Proteogenomic Network Analysis of Context-Specific KRAS Signaling In Mouse-to-Human Cross-Species TranslationPossible reference: Brubaker, DK. et al. (2019) Proteogenomic Network Analysis of Context-Specific KRAS Signaling in Mouse-to-Human Cross-Species Translation., Cell Syst, PMID 31521603
PXD013917 no publication (from MassIVE)Dataset title: GBS Choroid Plexus Infection ProteomicsPossible reference: Campeau, A. et al. (2020) Multidimensional Proteome Profiling of Blood-Brain Barrier Perturbation by Group B Streptococcus., mSystems, PMID 32843537
PXD013907 Dataset with its publication pending (from PRIDE)Dataset title: The dynamic configuration and phosphorylation of the C-terminal HEAT domain of huntingtin modulates its functionPossible reference: Jung, T. et al. (2020) The Polyglutamine Expansion at the N-Terminal of Huntingtin Protein Modulates the Dynamic Configuration and Phosphorylation of the C-Terminal HEAT Domain., Structure, PMID 32668197
PXD013905 Dataset with its publication pending (from jPOST)Dataset title: The Correlation among Serum Proteomics and Clinical Profiles in Fibromyalgia WomenPossible reference: Han, CL. et al. (2020) Serum proteome profiles revealed dysregulated proteins and mechanisms associated with fibromyalgia syndrome in women., Sci Rep, PMID 32704114
PXD013894 Dataset with its publication pending (from PRIDE)Dataset title: The ER protein translocation channel subunit Sbh1 controls virulence of Cryptococcus neoformansPossible reference: Santiago-Tirado, FH. et al. (2023) The ER Protein Translocation Channel Subunit Sbh1 Controls Virulence of Cryptococcus neoformans., mBio, PMID 36749043
PXD013893 Dataset with its publication pending (from PRIDE)Dataset title: Sequential phosphoproteomics and N-glycoproteomics of plasma-derived extracellular vesiclesPossible reference: Andaluz Aguilar, H. et al. (2020) Sequential phosphoproteomics and N-glycoproteomics of plasma-derived extracellular vesicles., Nat Protoc, PMID 31863077
PXD013886 no publication (from MassIVE)Dataset title: A dynamic charge:charge interaction modulates PP2A:B56 interactionsPossible reference: Wang, X. et al. (2020) A dynamic charge-charge interaction modulates PP2A:B56 substrate recruitment., Elife, PMID 32195664
PXD013858 Dataset with its publication pending (from PRIDE)Dataset title: Proteomics analysis of Volvariella volvacea after cold treatmentPossible reference: Gong, M. et al. (2020) Chilling stress reduced protein translation by the ubiquitination of ribosomal proteins in Volvariella volvacea., J Proteomics, PMID 31982547
PXD013852 Dataset with its publication pending (from PRIDE)Dataset title: Quantitative comparative analysis of human erythrocyte surface proteins between individuals from two genetically distinct populationsPossible reference: Ravenhill, BJ. et al. (2019) Quantitative comparative analysis of human erythrocyte surface proteins between individuals from two genetically distinct populations., Commun Biol, PMID 31552303
PXD013806 Dataset with its publication pending (from PRIDE)Dataset title: Proteome of lactate grown Eubacterium limosum ATCC 8486Possible reference: Picking, JW. et al. (2019) MtpB, a member of the MttB superfamily from the human intestinal acetogen Eubacterium limosum, catalyzes proline betaine demethylation., J Biol Chem, PMID 31341018
PXD013800 Dataset with its publication pending (from PRIDE)Dataset title: LARGE2 mediates O-glycosylation in HT-29 colorectal cancer cellsPossible reference: Dietinger, V. et al. (2020) Wnt-driven LARGE2 mediates laminin-adhesive O-glycosylation in human colonic epithelial cells and colorectal cancer., Cell Commun Signal, PMID 32586342
PXD013791 Dataset with its publication pending (from PRIDE)Dataset title: Adaptation of Dinoroseobacter shibae to different kinds of oxidative stressPossible reference: Beier, N. et al. (2021) Adaptation of Dinoroseobacter shibae to oxidative stress and the specific role of RirA., PLoS One, PMID 33780465
PXD013727 Dataset with its publication pending (from PRIDE)Dataset title: ¬¬Identifying the cellular interactome of Epstein-Barr virus lytic regulator Zta reveals cellular targets contributing to viral replication.Possible reference: Zhou, Y. et al. (2020) Identifying the Cellular Interactome of Epstein-Barr Virus Lytic Regulator Zta Reveals Cellular Targets Contributing to Viral Replication., J Virol, PMID 31694936
PXD013699 no publication (from MassIVE)Dataset title: iTRAQ-based proteomics for Streptococcus thermophilus ASCC 1275Possible reference: Wu, Q. et al. (2019) Functional Genomic Analyses of Exopolysaccharide-Producing Streptococcus thermophilus ASCC 1275 in Response to Milk Fermentation Conditions., Front Microbiol, PMID 31507577
PXD013697 no publication (from MassIVE)Dataset title: Oxygen-dependent interaction between FBXL5 and CIA targeting complex regulates iron homeostasisPossible reference: Mayank, AK. et al. (2019) An Oxygen-Dependent Interaction between FBXL5 and the CIA-Targeting Complex Regulates Iron Homeostasis., Mol Cell, PMID 31229404
PXD013689 Dataset with its publication pending (from PRIDE)Dataset title: Brain adiponectin signaling controls peripheral insulin response in DrosophilaPossible reference: Arquier, N. et al. (2021) Brain adiponectin signaling controls peripheral insulin response in Drosophila., Nat Commun, PMID 34561451
PXD013645 Dataset with its publication pending (from PRIDE)Dataset title: The O-GlcNAc transferase interaction network regulates the stress responsePossible reference: Martinez, M. et al. (2021) Quantitative Proteomics Reveals that the OGT Interactome Is Remodeled in Response to Oxidative Stress., Mol Cell Proteomics, PMID 33716169
PXD013602 Dataset with its publication pending (from PRIDE)Dataset title: Prochlorococcus extracellular vesicles: molecular composition and adsorption to diverse microbesPossible reference: Biller, SJ. et al. (2022) Prochlorococcus extracellular vesicles: molecular composition and adsorption to diverse microbes., Environ Microbiol, PMID 34766712
PXD013540 Dataset with its publication pending (from jPOST)Dataset title: Anti-Influenza Activity of the Ribonuclease Binase in A549 cellsPossible reference: Ulyanova, V. et al. (2020) Anti-Influenza Activity of the Ribonuclease Binase: Cellular Targets Detected by Quantitative Proteomics., Int J Mol Sci, PMID 33167434
PXD013527 no publication (from MassIVE)Dataset title: Wigington_calcineurinphosphatasesignaling_2019Possible reference: Wigington, CJ. et al. (2019) Tracking Public Health Workforce Retention: Observations From CDC's Public Health Associate Program., Am J Public Health, PMID 31318602
PXD013485 Dataset with its publication pending (from PRIDE)Dataset title: Effect of lung ventilation and acid treatment on mouse lung proteomePossible reference: Islam, D. et al. (2019) Identification and Modulation of Microenvironment Is Crucial for Effective Mesenchymal Stromal Cell Therapy in Acute Lung Injury., Am J Respir Crit Care Med, PMID 30521764
PXD013460 Dataset with its publication pending (from PRIDE)Dataset title: Sex and age specific adaptations of the hippocampal proteome to early-life stressPossible reference: Eagleson, KL. et al. (2020) Proteomic and mitochondrial adaptations to early-life stress are distinct in juveniles and adults., Neurobiol Stress, PMID 33344706
PXD013453 Dataset with its publication pending (from PRIDE)Dataset title: R2-P2 rapid-robotic phosphoproteomics enables multidimensional cell signaling studiesPossible reference: Leutert, M. et al. (2019) R2-P2 rapid-robotic phosphoproteomics enables multidimensional cell signaling studies., Mol Syst Biol, PMID 31885202
PXD013410 Dataset with its publication pending (from jPOST)Dataset title: Age-associated mouse brown adipose tissue mitochondrial proteomePossible reference: Tajima, K. et al. (2019) Mitochondrial lipoylation integrates age-associated decline in brown fat thermogenesis., Nat Metab, PMID 32313871
PXD013316 Dataset with its publication pending (from PRIDE)Dataset title: Cyclin-dependent-like kinase 5 is required for pain signalling in both human neurons and mouse modelsPossible reference: La Montanara, P. et al. (2020) Cyclin-dependent-like kinase 5 is required for pain signaling in human sensory neurons and mouse models., Sci Transl Med, PMID 32641489
PXD013307 Dataset with its publication pending (from PRIDE)Dataset title: Metabolic remodeling during biofilm development of Bacillus subtilisPossible reference: Boersma, MJ. et al. (2015) Minimal Peptidoglycan (PG) Turnover in Wild-Type and PG Hydrolase and Cell Division Mutants of Streptococcus pneumoniae D39 Growing Planktonically and in Host-Relevant Biofilms., J Bacteriol, PMID 26303829
PXD013272 no publication (from MassIVE)Dataset title: Paenibacillus larvae exoproteins of ERIC I-IV genotypesPossible reference: Erban, T. et al. (2019) Comprehensive proteomic analysis of exoproteins expressed by ERIC I, II, III and IV Paenibacillus larvae genotypes reveals a wide range of virulence factors., Virulence, PMID 30957692
PXD013266 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic analysis of differentially expressed proteins in two Trypanosoma vivax strains with different patterns of virulence and pathogenicity in sheep.Possible reference: Ramirez-Barrios, R. et al. (2019) Trypanosoma vivax infection in sheep: Different patterns of virulence and pathogenicity associated with differentially expressed proteomes., Vet Parasitol, PMID 34311938
PXD013257 Dataset with its publication pending (from PRIDE)Dataset title: Comparative proteomic analysis of pepper (Capsicum annuum L.) seedlings under selenium stressPossible reference: Zhang, C. et al. (2019) Comparative proteomic analysis of pepper (Capsicum annuum L.) seedlings under selenium stress., PeerJ, PMID 31799069
PXD013215 Dataset with its publication pending (from PRIDE)Dataset title: APEX2-mediated proximity labeling of mitochondrial matrix and chromatin in budding yeastPossible reference: Singer-Krüger, B. et al. (2020) APEX2-mediated proximity labeling resolves protein networks in Saccharomyces cerevisiae cells., FEBS J, PMID 31323700
PXD013199 no publication (from MassIVE)Dataset title: Analysis of brain and cerebrospinal fluid from mouse models of the three major forms of neuronal ceroid lipofuscinosis reveals changes in the lysosomal proteome.Possible reference: Sleat, DE. et al. (2019) Analysis of Brain and Cerebrospinal Fluid from Mouse Models of the Three Major Forms of Neuronal Ceroid Lipofuscinosis Reveals Changes in the Lysosomal Proteome., Mol Cell Proteomics, PMID 31501224
PXD013185 Dataset with its publication pending (from jPOST)Dataset title: Species-specific quantitative proteomics profiles of sarcoma patient-derived models closely reflect their primary tumors　Possible reference: Shiozawa, K. et al. (2019) Species-Specific Quantitative Proteomics Profiles of Sarcoma Patient-Derived Models Closely Reflect Their Primary Tumors., Proteomics Clin Appl, PMID 31419061
PXD013131 Dataset with its publication pending (from PRIDE)Dataset title: Exploring the virulence gene interactome with CRISPR/dCas9 in the human malaria parasitePossible reference: Bryant, JM. et al. (2020) Exploring the virulence gene interactome with CRISPR/dCas9 in the human malaria parasite., Mol Syst Biol, PMID 32816370
PXD013111 Dataset with its publication pending (from PRIDE)Dataset title: The Urinary Peptidome Identifies Prognostic Biomarkers for Small Renal MassesPossible reference: Di Meo, A. et al. (2020) Searching for prognostic biomarkers for small renal masses in the urinary proteome., Int J Cancer, PMID 31465112
PXD013100 no publication (from MassIVE)Dataset title: Pancreatic beta cell proteome with increased proliferation in NOD micePossible reference: Szabat, M. et al. (2016) Reduced Insulin Production Relieves Endoplasmic Reticulum Stress and Induces β Cell Proliferation., Cell Metab, PMID 26626461
PXD013095 Dataset with its publication pending (from PRIDE)Dataset title: Role of bcatenin in hepatocellular carcinomaPossible reference: Pérez Rojas, J. et al. (2013) [Immunophenotypic classification of 3 cases of hepatocellular adenoma. Differential diagnosis with focal nodular hyperplasia]., Gastroenterol Hepatol, PMID 23664829
PXD013046 Dataset with its publication pending (from jPOST)Dataset title: Global role of the membrane protease LonB in Archaea: Potential protease targets revealed by quantitative proteome analysis of a lonB mutant in Haloferax volcaniiPossible reference: Cerletti, M. et al. (2015) Global role of the membrane protease LonB in Archaea: Potential protease targets revealed by quantitative proteome analysis of a lonB mutant in Haloferax volcanii., J Proteomics, PMID 25829260
PXD013043 no publication (from MassIVE)Dataset title: Proteomic analysis of synovial fluid identifies periostin as a biomarker for anterior cruciate ligament injuryPossible reference: Brophy, RH. et al. (2019) Proteomic analysis of synovial fluid identifies periostin as a biomarker for anterior cruciate ligament injury., Osteoarthritis Cartilage, PMID 31430535
PXD012999 Dataset with its publication pending (from PRIDE)Dataset title: Proteomics and proteogenomics analysis of sweet potato (Ipomoea batatas) leaf and rootPossible reference: Al-Mohanna, T. et al. (2019) Proteomics and Proteogenomics Analysis of Sweetpotato ( Ipomoea batatas) Leaf and Root., J Proteome Res, PMID 31117636
PXD012939 Dataset with its publication pending (from PRIDE)Dataset title: Quantitative photo-crosslinking mass spectrometry reveals protein structure response to environmental changesPossible reference: Müller, F. et al. (2019) Quantitative Photo-crosslinking Mass Spectrometry Revealing Protein Structure Response to Environmental Changes., Anal Chem, PMID 31274288
PXD012925 Dataset with its publication pending (from PRIDE)Dataset title: DPPA2/4 and SUMO E3 ligase PIAS4 opposingly regulate the emergence of 2C-like cells and zygotic transcriptional programPossible reference: Yan, YL. et al. (2019) DPPA2/4 and SUMO E3 ligase PIAS4 opposingly regulate zygotic transcriptional program., PLoS Biol, PMID 31226106
PXD012919 no publication (from MassIVE)Dataset title: Analysis of mitochondrial N termini by HUNTER (High-efficiency Undecanal-based N Termini EnRichment) Possible reference: Weng, SSH. et al. (2019) Sensitive Determination of Proteolytic Proteoforms in Limited Microscale Proteome Samples., Mol Cell Proteomics, PMID 31471496
PXD012860 Dataset with its publication pending (from PRIDE)Dataset title: Cdc14 and PP2A Phosphatases Cooperate to Shape Phosphoproteome Dynamics during Mitotic ExitPossible reference: Touati, SA. et al. (2019) Cdc14 and PP2A Phosphatases Cooperate to Shape Phosphoproteome Dynamics during Mitotic Exit., Cell Rep, PMID 31722221
PXD012798 Dataset with its publication pending (from PRIDE)Dataset title: Variability in exosomal protein cargo of human lung adenocarcinoma cellsPossible reference: Tiruvayipati, S. et al. (2020) Variability in protein cargo detection in technical and biological replicates of exosome-enriched extracellular vesicles., PLoS One, PMID 32119684
PXD012759 Dataset with its publication pending (from PRIDE)Dataset title: Crosslinking Proteomics Indicates Effects of Simvastatin on the TLR2 interactome and Reveals ACTR1A as a Novel Regulator of the TLR2 Signal CascadePossible reference: Kamal, AHM. et al. (2019) Cross-linking Proteomics Indicates Effects of Simvastatin on the TLR2 Interactome and Reveals ACTR1A as a Novel Regulator of the TLR2 Signal Cascade., Mol Cell Proteomics, PMID 31221720
PXD012718 no publication (from MassIVE)Dataset title: RIT1 oncoproteins escape LZTR1-mediated proteolysis Possible reference: Castel, P. et al. (2019) RIT1 oncoproteins escape LZTR1-mediated proteolysis., Science, PMID 30872527
PXD012696 no publication (from MassIVE)Dataset title: Sirtuin 5 regulates proximal tubule fatty acid oxidation to protect against acute kidney injuryPossible reference: Chiba, T. et al. (2019) Sirtuin 5 Regulates Proximal Tubule Fatty Acid Oxidation to Protect against AKI., J Am Soc Nephrol, PMID 31575700
PXD012601 Dataset with its publication pending (from jPOST)Dataset title: A Label Free Mass Spectrometry Method to Predict Endogenous Protein Complex CompositionPossible reference: McBride, Z. et al. (2019) A Label-free Mass Spectrometry Method to Predict Endogenous Protein Complex Composition., Mol Cell Proteomics, PMID 31186290
PXD012576 Dataset with its publication pending (from PRIDE)Dataset title: Proteomics of different types of immunity in potatoPossible reference: Burra, DD. et al. (2018) Comparative Membrane-Associated Proteomics of Three Different Immune Reactions in Potato., Int J Mol Sci, PMID 29439444
PXD012540 Dataset with its publication pending (from jPOST)Dataset title: HDAC2 regulates site-specific acetylation of MDM2 and its ubiquitination signaling in tumor suppressionPossible reference: Patel, N. et al. (2019) HDAC2 Regulates Site-Specific Acetylation of MDM2 and Its Ubiquitination Signaling in Tumor Suppression., iScience, PMID 30818224
PXD012496 no publication (from MassIVE)Dataset title: The N-cadherin interactome in primary cardiomyocytes as defined by quantitative proximity proteomicsPossible reference: Li, Y. et al. (2019) The N-cadherin interactome in primary cardiomyocytes as defined using quantitative proximity proteomics., J Cell Sci, PMID 30630894
PXD012479 Dataset with its publication pending (from PRIDE)Dataset title: microbiome of methane hydrate sediments: Hydrate RidgePossible reference: Glass, JB. et al. (2014) Geochemical, metagenomic and metaproteomic insights into trace metal utilization by methane-oxidizing microbial consortia in sulphidic marine sediments., Environ Microbiol, PMID 24148160
PXD012336 Dataset with its publication pending (from PRIDE)Dataset title: Bermudagrass stolon and shoot comparative proteomicsPossible reference: Zhang, B. et al. (2019) Comparative proteomic analysis provides new insights into the specialization of shoots and stolons in bermudagrass (Cynodon dactylon L.)., BMC Genomics, PMID 31510936
PXD012268 Dataset with its publication pending (from jPOST)Dataset title: One-step SH2 superbinder based approach for sensitive analysis of tyrosine phosphoproteome Possible reference: Yao, Y. et al. (2019) One-Step SH2 Superbinder-Based Approach for Sensitive Analysis of Tyrosine Phosphoproteome., J Proteome Res, PMID 30875230
PXD012205 no publication (from MassIVE)Dataset title: Quantitative Proteomics by SWATH-MS of Maternal Plasma Exosome Determine Pathways Associated with Term and Preterm BirthPossible reference: Menon, R. et al. (2019) Quantitative Proteomics by SWATH-MS of Maternal Plasma Exosomes Determine Pathways Associated With Term and Preterm Birth., Endocrinology, PMID 30668697
PXD012198 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic analysis of glomerular organoid extracellular matrixPossible reference: Morais, MRPT. et al. (2022) Kidney organoids recapitulate human basement membrane assembly in health and disease., Elife, PMID 35076391
PXD012177 Dataset with its publication pending (from PRIDE)Dataset title: Cassiopea xamachana: CassiosomesPossible reference: Ames, CL. et al. (2020) Cassiosomes are stinging-cell structures in the mucus of the upside-down jellyfish Cassiopea xamachana., Commun Biol, PMID 32054971
PXD012157 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic proximity mapping by rapamycin-dependent targeting of APEX2 to tail-anchored membrane proteinsPossible reference: James, C. et al. (2019) Proteomic mapping by rapamycin-dependent targeting of APEX2 identifies binding partners of VAPB at the inner nuclear membrane., J Biol Chem, PMID 31519755
PXD012129 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic Profiling of Mammalian COPI VesiclesPossible reference: Haines, DS. et al. (2012) Protein interaction profiling of the p97 adaptor UBXD1 points to a role for the complex in modulating ERGIC-53 trafficking., Mol Cell Proteomics, PMID 22337587
PXD012103 Dataset with its publication pending (from PRIDE)Dataset title: Toxoplasma HCE1 ImmunoprecipitationsPossible reference: Panas, MW. et al. (2019) Toxoplasma Controls Host Cyclin E Expression through the Use of a Novel MYR1-Dependent Effector Protein, HCE1., mBio, PMID 31040242
PXD012090 Dataset with its publication pending (from PRIDE)Dataset title: comparative proteomics of deer antlerPossible reference: Ding, QN. et al. (2013) [Comparative study on the protein maps of different parts of Cervus nippon antler by two-dimensional electrophoresis]., Zhong Yao Cai, PMID 24133991
PXD012062 Dataset with its publication pending (from PRIDE)Dataset title: Metaproteomics of plastic biofilms in marine environmentsPossible reference: Oberbeckmann, S. et al. (2021) Genomic and proteomic profiles of biofilms on microplastics are decoupled from artificial surface properties., Environ Microbiol, PMID 33876529
PXD012041 Dataset with its publication pending (from PRIDE)Dataset title: Response of the Biomining Acidithiobacillus ferrooxidans to high Cadmium ConcentrationsPossible reference: Zheng, C. et al. (2012) Transcriptional and functional studies of a Cd(II)/Pb(II)-responsive transcriptional regulator(CmtR) from Acidithiobacillus ferrooxidans ATCC 23270., Curr Microbiol, PMID 22555344
PXD012001 Dataset with its publication pending (from PRIDE)Dataset title: Systems level analysis of epithelial to mesenchymal transition reveals more alteration in phosphoproteome than proteome and identifies DNAJB4 and CD81 as EMT regulatorsPossible reference: Uretmen Kagiali, ZC. et al. (2019) Systems-level Analysis Reveals Multiple Modulators of Epithelial-mesenchymal Transition and Identifies DNAJB4 and CD81 as Novel Metastasis Inducers in Breast Cancer., Mol Cell Proteomics, PMID 31221721
PXD011996 Dataset with its publication pending (from PRIDE)Dataset title: Depletion of high molecular mass proteins for the identification of small proteins and small open reading frame encoded peptides in cellular proteomesPossible reference: Cassidy, L. et al. (2019) Depletion of High-Molecular-Mass Proteins for the Identification of Small Proteins and Short Open Reading Frame Encoded Peptides in Cellular Proteomes., J Proteome Res, PMID 30779583
PXD011981 Dataset with its publication pending (from PRIDE)Dataset title: Proteomics analysis of behavioral adaptation in zebrafish larvaePossible reference: Huang, KT. et al. (2023) Z-REX: shepherding reactive electrophiles to specific proteins expressed tissue specifically or ubiquitously, and recording the resultant functional electrophile-induced redox responses in larval fish., Nat Protoc, PMID 37020146
PXD011945 no publication (from MassIVE)Dataset title: Xcc Pan ProteomePossible reference: Távora, FTPK. et al. (2019) Pan Proteome of Xanthomonas campestris pv. campestris Isolates Contrasting in Virulence., Proteomics, PMID 31050381
PXD011858 no publication (from MassIVE)Dataset title: Chemical Derivatization of Streptavidin Provides Protection from Tryptic ProteolysisPossible reference: Barshop, WD. et al. (2019) Chemical Derivatization of Affinity Matrices Provides Protection from Tryptic Proteolysis., J Proteome Res, PMID 31498634
PXD011769 Dataset with its publication pending (from PRIDE)Dataset title: Acetylome analysis of Thermus thermophilus HB27Possible reference: Masui, R. et al. (2014) Structural insights of post-translational modification sites in the proteome of Thermus thermophilus., J Struct Funct Genomics, PMID 24407378
PXD011749 Dataset with its publication pending (from PRIDE)Dataset title: Plasma proteome profiling to detect and avoid sample-related biases in biomarker studiesPossible reference: Geyer, PE. et al. (2019) Plasma Proteome Profiling to detect and avoid sample-related biases in biomarker studies., EMBO Mol Med, PMID 31566909
PXD011748 Chen A, Franks, A & Slavov, N. DART-ID increases single-cell proteome coverage. (submitted).; Chen A, Franks A & Slavov N. DART-ID increases single-cell proteome coverage. biorXiv, DOI: 10.1101/399121. PLOS Comp Bio (submitted). (from MassIVE)Dataset title: DART-ID increases single-cell proteome coveragePossible reference: Chen, AT. et al. (2019) DART-ID increases single-cell proteome coverage., PLoS Comput Biol, PMID 31260443
PXD011746 no publication (from MassIVE)Dataset title: KILchip v1.0 A novel Plasmodium falciparum merozoite protein microarray to facilitate malaria vaccine candidate prioritizationPossible reference: Kamuyu, G. et al. (2018) KILchip v1.0: A Novel Plasmodium falciparum Merozoite Protein Microarray to Facilitate Malaria Vaccine Candidate Prioritization., Front Immunol, PMID 30619257
PXD011739 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic SIP of the soil communitiesPossible reference: Lünsmann, V. et al. (2016) In situ protein-SIP highlights Burkholderiaceae as key players degrading toluene by para ring hydroxylation in a constructed wetland model., Environ Microbiol, PMID 26616584
PXD011737 Dataset with its publication pending (from PRIDE)Dataset title: Multi-omics of the rhizosphere communities of ArabidopsisPossible reference: Secomandi, E. et al. (2025) Waterlogging alone and combined with other abiotic stresses provides unique metabolic signatures at the plant-rhizosphere interface: A multi-omics perspective on root metabolome, root exudation and rhizomicrobiome., Plant Physiol Biochem, PMID 39965412
PXD011726 Dataset with its publication pending (from PRIDE)Dataset title: E. coli BW25113 proteomics in nutrient-rich and minimal mediumPossible reference: Maser, A. et al. (2020) Amino acids are key substrates to Escherichia coli BW25113 for achieving high specific growth rate., Res Microbiol, PMID 32057959
PXD011725 Dataset with its publication pending (from PRIDE)Dataset title: Benchmarking accuracy and precision of intensity-based absolute quantification of protein abundances in Saccharomyces cerevisiaePossible reference: Sánchez, BJ. et al. (2021) Benchmarking accuracy and precision of intensity-based absolute quantification of protein abundances in Saccharomyces cerevisiae., Proteomics, PMID 33452728
PXD011717 Dataset with its publication pending (from PRIDE)Dataset title: A Qualitative Proteome-wide Lysine Succinylation Profiling of Tea Revealed Its Involvement in Primary MetabolismPossible reference: Qiu, C. et al. (2020) [A Qualitative Proteome-Wide Lysine Succinylation Profiling of Tea Revealed its Involvement in Primary Metabolism]., Mol Biol (Mosk), PMID 32163400
PXD011713 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic analysis of frontal cortex area 8 in frontotemporal lobar degeneration with c9orf72 mutationPossible reference: Andrés-Benito, P. et al. (2019) Combined Transcriptomics and Proteomics in Frontal Cortex Area 8 in Frontotemporal Lobar Degeneration Linked to C9ORF72 Expansion., J Alzheimers Dis, PMID 30909235
PXD011703 Dataset with its publication pending (from PRIDE)Dataset title: A chemical probe for Tudor domain protein SPIN1 to investigate chromatin functionsPossible reference: Fagan, V. et al. (2019) A Chemical Probe for Tudor Domain Protein Spindlin1 to Investigate Chromatin Function., J Med Chem, PMID 31550156
PXD011693 Dataset with its publication pending (from PRIDE)Dataset title: Shotgun Proteomic Analysis of ESBL and non ESBL Producing Klebsiella Pneumoniae Clinical IsolatesPossible reference: Enany, S. et al. (2020) Shotgun proteomic analysis of ESBL-producing and non-ESBL-producing Klebsiella Pneumoniae clinical isolates., Microbiol Res, PMID 32078895
PXD011667 Dataset with its publication pending (from PRIDE)Dataset title: Dirhodium (II) Complex Interferes with Iron-Transport System to Exert Antibacterial Action against Streptococcus pneumoniaePossible reference: Yang, XY. et al. (2019) Dirhodium (II) complex interferes with iron-transport system to exert antibacterial action against Streptococcus pneumoniae., J Proteomics, PMID 30521977
PXD011644 Dataset with its publication pending (from PRIDE)Dataset title: Nematostella vectensis argonautesPossible reference: Praher, D. et al. (2017) Characterization of the piRNA pathway during development of the sea anemone Nematostella vectensis., RNA Biol, PMID 28783426
PXD011637 no publication (from MassIVE)Dataset title: Spatial and proteomic profiling reveals centrosome-independent features of centriolar satellitesPossible reference: Gheiratmand, L. et al. (2019) Spatial and proteomic profiling reveals centrosome-independent features of centriolar satellites., EMBO J, PMID 31304627
PXD011632 Dataset with its publication pending (from PRIDE)Dataset title: Tks5 protein Interactome .Possible reference: Swayampakula, M. et al. (2017) The interactome of metabolic enzyme carbonic anhydrase IX reveals novel roles in tumor cell migration and invadopodia/MMP14-mediated invasion., Oncogene, PMID 28692057
PXD011630 Dataset with its publication pending (from PRIDE)Dataset title: Integrative analysis identifies key molecular signatures underlying neurodevelopmental deficits in fragile X syndromePossible reference: Utami, KH. et al. (2020) Integrative Analysis Identifies Key Molecular Signatures Underlying Neurodevelopmental Deficits in Fragile X Syndrome., Biol Psychiatry, PMID 32653109
PXD011624 Dataset with its publication pending (from PRIDE)Dataset title: Validation expression of nine proteins by parallel reaction monitoringPossible reference: Tennstaedt, A. et al. (2015) In Vivo Fate Imaging of Intracerebral Stem Cell Grafts in Mouse Brain., PLoS One, PMID 26641453
PXD011611 Dataset with its publication pending (from PRIDE)Dataset title: Lipopolysaccharide-regulated secretion of soluble and vesicle-based colorectal cancer cell proteinsPossible reference: Garcia de Durango, CR. et al. (2021) Lipopolysaccharide-regulated secretion of soluble and vesicle-based proteins from a panel of colorectal cancer cell lines., Proteomics Clin Appl, PMID 33587312
PXD011571 Dataset with its publication pending (from PRIDE)Dataset title: Selective autophagy degrades nuclear pore complexesPossible reference: Simioni, C. et al. (2016) Synergistic effects of selective inhibitors targeting the PI3K/AKT/mTOR pathway or NUP214-ABL1 fusion protein in human Acute Lymphoblastic Leukemia., Oncotarget, PMID 27821800
PXD011560 Dataset with its publication pending (from PRIDE)Dataset title: Emiliania Huxleyi exposed to 4 treatments of HHQPossible reference: Garrett, O. et al. (2023) A bacterial quorum sensing signal is a potent inhibitor of de novo pyrimidine biosynthesis in the globally abundant Emiliania huxleyi., Front Microbiol, PMID 37869665
PXD011558 Dataset with its publication pending (from PRIDE)Dataset title: Shotgun Proteomic Analysis of ESBL and non ESBL Producing Klebsiella Pneumoniae Clinical IsolatesPossible reference: Enany, S. et al. (2020) Shotgun proteomic analysis of ESBL-producing and non-ESBL-producing Klebsiella Pneumoniae clinical isolates., Microbiol Res, PMID 32078895
PXD011544 no publication (from MassIVE)Dataset title: Sequential Windowed Acquisition of Reporter Masses for Quantitation-First ProteomicsPossible reference: Barshop, WD. et al. (2019) Sequential Windowed Acquisition of Reporter Masses for Quantitation-First Proteomics., J Proteome Res, PMID 30781952
PXD011534 Dataset with its publication pending (from PRIDE)Dataset title: Deacetylation inhibition reverses PABPN1-dependent muscle wastingPossible reference: Olie, CS. et al. (2019) Deacetylation Inhibition Reverses PABPN1-Dependent Muscle Wasting., iScience, PMID 30739015
PXD011476 no publication (from MassIVE)Dataset title: Extended sialylated O-glycan repertoire of human urinary glycoproteins discovered and characterized using EThcDPossible reference: Darula, Z. et al. (2019) Extended Sialylated O-Glycan Repertoire of Human Urinary Glycoproteins Discovered and Characterized Using Electron-Transfer/Higher-Energy Collision Dissociation., J Proteome Res, PMID 30407017
PXD011475 Dataset with its publication pending (from PRIDE)Dataset title: espB deletion mutant of Mycobacterium tuberculosisPossible reference: Soler-Arnedo, P. et al. (2020) Polarly Localized EccE1 Is Required for ESX-1 Function and Stabilization of ESX-1 Membrane Proteins in Mycobacterium tuberculosis., J Bacteriol, PMID 31843799
PXD011459 Dataset with its publication pending (from PRIDE)Dataset title: Sequential digestion with Trypsin and Elastase in cross-linking/mass spectrometryPossible reference: Dau, T. et al. (2019) Sequential Digestion with Trypsin and Elastase in Cross-Linking Mass Spectrometry., Anal Chem, PMID 30817130
PXD011382 Dataset with its publication pending (from PRIDE)Dataset title: The GTPase Nog1 co-ordinates assembly, maturation and quality control of distant ribosomal functional centersPossible reference: Klingauf-Nerurkar, P. et al. (2020) The GTPase Nog1 co-ordinates the assembly, maturation and quality control of distant ribosomal functional centers., Elife, PMID 31909713
PXD011352 Dataset with its publication pending (from iProX)Dataset title: Histone-lysine N-methyltransferase SETD7 is a potential serum biomarker for colorectal cancer patientsPossible reference: Duan, B. et al. (2018) Histone-lysine N-methyltransferase SETD7 is a potential serum biomarker for colorectal cancer patients., EBioMedicine, PMID 30361067
PXD011338 Dataset with its publication pending (from jPOST)Dataset title: Degradation of OPG by HtrA1Possible reference: Ochiai, N. et al. (2019) Murine osteoclasts secrete serine protease HtrA1 capable of degrading osteoprotegerin in the bone microenvironment., Commun Biol, PMID 30854478
PXD011337 Dataset with its publication pending (from iProX)Dataset title: Black soil metaproteomicsPossible reference: Lünsmann, V. et al. (2016) Aerobic Toluene Degraders in the Rhizosphere of a Constructed Wetland Model Show Diurnal Polyhydroxyalkanoate Metabolism., Appl Environ Microbiol, PMID 27129963
PXD011323 Dataset with its publication pending (from PRIDE)Dataset title: On-chip AP-MS: Interaction proteomics on a microfluidics platformPossible reference: Furlan, C. et al. (2019) Miniaturised interaction proteomics on a microfluidic platform with ultra-low input requirements., Nat Commun, PMID 30948724
PXD011304 Dataset with its publication pending (from PRIDE)Dataset title: Macromolecular connectivity landscape of mammalian brainPossible reference: Pourhaghighi, R. et al. (2020) BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain., Cell Syst, PMID 32325033
PXD011298 no publication (from MassIVE)Dataset title: Multi-omics of azacitidine-treated AML cells reveals variable and convergent targets that remodel the cell surface proteomePossible reference: Leung, KK. et al. (2019) Multiomics of azacitidine-treated AML cells reveals variable and convergent targets that remodel the cell-surface proteome., Proc Natl Acad Sci U S A, PMID 30584089
PXD011281 Dataset with its publication pending (from PRIDE)Dataset title: proteogenomic and metabolic adaptations of Staphylococcus aureusPossible reference: Busche, T. et al. (2018) Comparative Secretome Analyses of Human and Zoonotic Staphylococcus aureus Isolates CC8, CC22, and CC398., Mol Cell Proteomics, PMID 30201737
PXD011260 no publication (from MassIVE)Dataset title: Excreted-Secreted Proteins from activated infective junveiles of the entomopathogenic nematode Steinernema feltiaePossible reference: Chang, DZ. et al. (2019) A core set of venom proteins is released by entomopathogenic nematodes in the genus Steinernema., PLoS Pathog, PMID 31042778
PXD011251 Dataset with its publication pending (from PRIDE)Dataset title: AML1-ETO induced leukemia stem cell self-renewal depends on Plcg1Possible reference: Schnoeder, TM. et al. (2022) PLCG1 is required for AML1-ETO leukemia stem cell self-renewal., Blood, PMID 34695195
PXD011232 Dataset with its publication pending (from jPOST)Dataset title: Comparative phosphoproteomic analysis of barley grains during imbibitionPossible reference: Ishikawa, S. et al. (2019) Comparative Phosphoproteomic Analysis of Barley Embryos with Different Dormancy during Imbibition., Int J Mol Sci, PMID 30669653
PXD011223 Dataset with its publication pending (from PRIDE)Dataset title: Gené organ engagement in lipid metabolism revealed by a combined transcriptomic and proteomic approachPossible reference: Xavier, MA. et al. (2019) Tick Gené's organ engagement in lipid metabolism revealed by a combined transcriptomic and proteomic approach., Ticks Tick Borne Dis, PMID 30904537
PXD011221 Dataset with its publication pending (from PRIDE)Dataset title: Improved SILAC Method for Double Labeling of Bacterial ProteomePossible reference: Han, J. et al. (2019) Improved SILAC method for double labeling of bacterial proteome., J Proteomics, PMID 30553074
PXD011211 Dataset with its publication pending (from PRIDE)Dataset title: Chaperonin CCT Checkpoint Function in Basal Transcription Factor TFIID AssemblyPossible reference: Antonova, SV. et al. (2018) Chaperonin CCT checkpoint function in basal transcription factor TFIID assembly., Nat Struct Mol Biol, PMID 30510221
PXD011209 Dataset with its publication pending (from PRIDE)Dataset title: Two of a kind: Transmissible Schwann cell cancers in the endangered Tasmanian devil.Possible reference: Patchett, AL. et al. (2020) Two of a kind: transmissible Schwann cell cancers in the endangered Tasmanian devil (Sarcophilus harrisii)., Cell Mol Life Sci, PMID 31375869
PXD011151 Dataset with its publication pending (from PRIDE)Dataset title: Mitochondrial proteome analysis from LC-MS/MS glioblastoma cell linesPossible reference: Gómez-Caudillo, L. et al. (2020) Principal component analysis on LC‑MS/MS and 2DE‑MALDI‑TOF in glioblastoma cell lines reveals that mitochondria act as organelle sensors of the metabolic state in glioblastoma., Oncol Rep, PMID 32468038
PXD011143 Dataset with its publication pending (from PRIDE)Dataset title: Proteome Profiling of PBMC-originated, iPSC-derived Lentoid Bodies at differentiation day 25Possible reference: Ali, M. et al. (2020) Generation and proteome profiling of PBMC-originated, iPSC-derived lentoid bodies., Stem Cell Res, PMID 32474394
PXD011049 Dataset with its publication pending (from PRIDE)Dataset title: Hormonal stimulation of carp is accompanied with changes of seminal plasma and spermatozoa proteomePossible reference: Dietrich, MA. et al. (2019) Hormonal stimulation of carp is accompanied by changes in seminal plasma proteins associated with the immune and stress responses., J Proteomics, PMID 31028945
PXD011039 Dataset with its publication pending (from PRIDE)Dataset title: Microautophagy of storage proteins in maize aleurone cells.Possible reference: Ding, X. et al. (2022) Microautophagy Mediates Vacuolar Delivery of Storage Proteins in Maize Aleurone Cells., Front Plant Sci, PMID 35251104
PXD011023 Dataset with its publication pending (from PRIDE)Dataset title: Heat and pressure resistance relates to protein folding and aggregationPossible reference: Li, H. et al. (2020) Heat and Pressure Resistance in Escherichia coli Relates to Protein Folding and Aggregation., Front Microbiol, PMID 32117137
PXD010996 Dataset with its publication pending (from PRIDE)Dataset title: Identification of Covalent Modifications Regulating Immune Signaling Complex Composition and PhenotypePossible reference: Frauenstein, A. et al. (2021) Identification of covalent modifications regulating immune signaling complex composition and phenotype., Mol Syst Biol, PMID 34318608
PXD010970 Dataset with its publication pending (from PRIDE)Dataset title: Reprograming of Trypanosoma cruzi metabolism triggered by parasite interaction with the host cell extracellular matrixPossible reference: Mattos, EC. et al. (2019) Reprogramming of Trypanosoma cruzi metabolism triggered by parasite interaction with the host cell extracellular matrix., PLoS Negl Trop Dis, PMID 30726203
PXD010901 Dataset with its publication pending (from PRIDE)Dataset title: Further evidence for sustainable alternatives to replace threatened animal horn based on quantitative proteomic analysisPossible reference: Liu, R. et al. (2018) Further evidence for sustainable alternatives to replace threatened animal horn based on quantitative proteomic analysis., Electrophoresis, PMID 30192403
PXD010883 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic characteristics of vessels in patients with chronic kidney diseasePossible reference: Alicic, RZ. et al. (2025) Combination therapy: an upcoming paradigm to improve kidney and cardiovascular outcomes in chronic kidney disease., Nephrol Dial Transplant, PMID 39907543
PXD010874 Dataset with its publication pending (from PRIDE)Dataset title: A 6-Month Systems Toxicology Inhalation/Cessation Study in ApoE-/- Mice to Investigate Cardiovascular and Respiratory Exposure Effects of the Modified-Risk Tobacco Products CHTP1.2 and THS2.2 Compared with the Effects of Conventional Cigarettes [Liver iTRPossible reference: Phillips, B. et al. (2019) A six-month systems toxicology inhalation/cessation study in ApoE-/- mice to investigate cardiovascular and respiratory exposure effects of modified risk tobacco products, CHTP 1.2 and THS 2.2, compared with conventional cigarettes., Food Chem Toxicol, PMID 30763686
PXD010873 Dataset with its publication pending (from PRIDE)Dataset title: A 6-Month Systems Toxicology Inhalation/Cessation Study in ApoE-/- Mice to Investigate Cardiovascular and Respiratory Exposure Effects of the Modified-Risk Tobacco Products CHTP1.2 and THS2.2 Compared with the Effects of Conventional Cigarettes [Heart iTRPossible reference: Phillips, B. et al. (2019) A six-month systems toxicology inhalation/cessation study in ApoE-/- mice to investigate cardiovascular and respiratory exposure effects of modified risk tobacco products, CHTP 1.2 and THS 2.2, compared with conventional cigarettes., Food Chem Toxicol, PMID 30763686
PXD010857 no publication (from MassIVE)Dataset title: Venom proteomics of Vipera kaznakoviPossible reference: Kovalchuk, SI. et al. (2016) Quantitative Proteomic Analysis of Venoms from Russian Vipers of Pelias Group: Phospholipases Aâ‚‚ are the Main Venom Components., Toxins (Basel), PMID 27077884
PXD010849 Dataset with its publication pending (from PRIDE)Dataset title: Reactive oxygen species (ROS) production activates unconventional secretion of antioxidant proteinsPossible reference: Canli, Ö. et al. (2016) Glutathione peroxidase 4 prevents necroptosis in mouse erythroid precursors., Blood, PMID 26463424
PXD010836 Dataset with its publication pending (from PRIDE)Dataset title: Proteome of the cellulose degradation system of Cytophaga hutchinsonii and Sporocytophaga myxococcoidesPossible reference: Taillefer, M. et al. (2018) Proteomic Dissection of the Cellulolytic Machineries Used by Soil-Dwelling Bacteroidetes., mSystems, PMID 30505945
PXD010817 Dataset with its publication pending (from PRIDE)Dataset title: Detergent-resistant microdomains in Saprolegnia parasiticaPossible reference: Mélida, H. et al. (2024) Quantitative proteomic analysis of plasma membranes from the fish pathogen Saprolegnia parasitica reveals promising targets for disease control., Microbiol Spectr, PMID 38888349
PXD010814 no publication (from MassIVE)Dataset title: Proteomic Manifestations of Genetic Defects in Autosomal Recessive Congenital IchthyosisPossible reference: Karim, N. et al. (2019) Proteomic manifestations of genetic defects in autosomal recessive congenital ichthyosis., J Proteomics, PMID 30978464
PXD010805 Dataset with its publication pending (from PRIDE)Dataset title: Dynamic proteomics reveals unexpected plasticity of cellular proteomePossible reference: Budzik, JM. et al. (2020) Dynamic post-translational modification profiling of Mycobacterium tuberculosis-infected primary macrophages., Elife, PMID 31951200
PXD010803 Dataset with its publication pending (from jPOST)Dataset title: Ubiquitin receptors are required for substrate-mediated activation of the proteasome's unfolding abilityPossible reference: Cundiff, MD. et al. (2019) Ubiquitin receptors are required for substrate-mediated activation of the proteasome's unfolding ability., Sci Rep, PMID 31601863
PXD010766 no publication (from MassIVE)Dataset title: Delayed effect of early-life exposure to 17-alpha-ethinylestradiol on brain proteome of adult mangrove rivulus fishPossible reference: Voisin, AS. et al. (2019) Early-life exposure to the endocrine disruptor 17-α-ethinylestradiol induces delayed effects in adult brain, liver and ovotestis proteomes of a self-fertilizing fish., J Proteomics, PMID 30550985
PXD010765 no publication (from MassIVE)Dataset title: Delayed effect of early-life exposure to 17-alpha-ethinylestradiol on brain proteome of adult mangrove rivulus fishPossible reference: Voisin, AS. et al. (2019) Early-life exposure to the endocrine disruptor 17-α-ethinylestradiol induces delayed effects in adult brain, liver and ovotestis proteomes of a self-fertilizing fish., J Proteomics, PMID 30550985
PXD010764 no publication (from MassIVE)Dataset title: Delayed effect of early-life exposure to 17-alpha-ethinylestradiol on brain proteome of adult mangrove rivulus fishPossible reference: Voisin, AS. et al. (2019) Early-life exposure to the endocrine disruptor 17-α-ethinylestradiol induces delayed effects in adult brain, liver and ovotestis proteomes of a self-fertilizing fish., J Proteomics, PMID 30550985
PXD010754 Dataset with its publication pending (from jPOST)Dataset title: human feces metaproteome from 81 personsPossible reference: Ferrer, M. et al. (2013) Microbiota from the distal guts of lean and obese adolescents exhibit partial functional redundancy besides clear differences in community structure., Environ Microbiol, PMID 22891823
PXD010753 Dataset with its publication pending (from PRIDE)Dataset title: Proteomics of Asrij perturbed Drosophila lymph glands as a resource for identification of new regulators of hematopoiesisPossible reference: Sinha, S. et al. (2019) Proteomics of Asrij Perturbation in Drosophila Lymph Glands for Identification of New Regulators of Hematopoiesis., Mol Cell Proteomics, PMID 30923041
PXD010718 no publication (from MassIVE)Dataset title: A cross-linking-aided PRM mass spectrometry for EGFR proteome Possible reference: Chen, Y. et al. (2019) A Cross-Linking-Aided Immunoprecipitation/Mass Spectrometry Workflow Reveals Extensive Intracellular Trafficking in Time-Resolved, Signal-Dependent Epidermal Growth Factor Receptor Proteome., J Proteome Res, PMID 31442056
PXD010717 no publication (from MassIVE)Dataset title: A cross-linking-aided mass spectrometry workflow reveals extensive intracellular trafficking in time-resolved, signal-dependent EGFR proteome Possible reference: Chen, Y. et al. (2019) A Cross-Linking-Aided Immunoprecipitation/Mass Spectrometry Workflow Reveals Extensive Intracellular Trafficking in Time-Resolved, Signal-Dependent Epidermal Growth Factor Receptor Proteome., J Proteome Res, PMID 31442056
PXD010716 Dataset with its publication pending (from jPOST)Dataset title: Isolated peroxisome-division machinery Possible reference: Imoto, Y. et al. (2013) Single-membrane-bounded peroxisome division revealed by isolation of dynamin-based machinery., Proc Natl Acad Sci U S A, PMID 23696667
PXD010706 no publication (from MassIVE)Dataset title: Venomics of the horned desert Viper (Cerastes Cerastes) and the mangrove pit viper (Cryptelytrops purpureomaculatus)Possible reference: Ozverel, CS. et al. (2019) Investigating the cytotoxic effects of the venom proteome of two species of the Viperidae family (Cerastes cerastes and Cryptelytrops purpureomaculatus) from various habitats., Comp Biochem Physiol C Toxicol Pharmacol, PMID 30825636
PXD010682 Dataset with its publication pending (from jPOST)Dataset title: Total proteome of Andrographis paniculataPossible reference: Talei, D. et al. (2015) Salt stress-induced protein pattern associated with photosynthetic parameters and andrographolide content in Andrographis paniculata Nees., Biosci Biotechnol Biochem, PMID 25384250
PXD010681 Dataset with its publication pending (from jPOST)Dataset title: Shotgun proteomics of Mn (II)-oxidizing Serratia marcescensPossible reference: Queiroz, PS. et al. (2018) Alterations in the proteomic composition of Serratia marcescens in response to manganese (II)., BMC Biotechnol, PMID 30594179
PXD010628 Dataset with its publication pending (from PRIDE)Dataset title: Nitric oxide modulates metabolic remodelling and immunometabolism in inflammatory murine macrophagesPossible reference: Bailey, JD. et al. (2019) Nitric Oxide Modulates Metabolic Remodeling in Inflammatory Macrophages through TCA Cycle Regulation and Itaconate Accumulation., Cell Rep, PMID 31269442
PXD010588 Dataset with its publication pending (from PRIDE)Dataset title: Discerning strain specific beta-lactam drug resistance of P. aeruginosaPossible reference: Jorgensen, SCJ. et al. (2018) Meropenem and Vaborbactam: Stepping up the Battle against Carbapenem-resistant Enterobacteriaceae., Pharmacotherapy, PMID 29427523
PXD010526 Dataset with its publication pending (from PRIDE)Dataset title: Soil metaproteome and pH effectsPossible reference: Nicora, CD. et al. (2013) Amino acid treatment enhances protein recovery from sediment and soils for metaproteomic studies., Proteomics, PMID 23776032
PXD010502 Dataset with its publication pending (from jPOST)Dataset title: Digestion of mother’s milk and fortifier proteins in the infant stomachPossible reference: Perrella, SL. et al. (2015) Influences of breast milk composition on gastric emptying in preterm infants., J Pediatr Gastroenterol Nutr, PMID 25313848
PXD010484 Mu A, Tak Shun Fung, Arminja N. Kettenbach, Rajarshi Chakrabarti, Henry Higgs. A complex containing lysine-acetylated actin inhibits the formin INF2. . (from MassIVE)Dataset title: A complex containing lysine-acetylated actin inhibits the formin INF2Possible reference: A, M. et al. (2019) A complex containing lysine-acetylated actin inhibits the formin INF2., Nat Cell Biol, PMID 30962575
PXD010448 Dataset with its publication pending (from jPOST)Dataset title: Proteomic analysis of soluble and surface-enriched proteins from Acanthamoeba castellanii trophozoites Possible reference: Maschio, VJ. et al. (2018) Comparative proteomic analysis of soluble and surface-enriched proteins from Acanthamoeba castellanii trophozoites., Mol Biochem Parasitol, PMID 30205118
PXD010381 Dataset with its publication pending (from PRIDE)Dataset title: Systems-based approaches enable the development of industrial yeast strains with improved phenotypesSystems-based approaches enable the development of industrial yeast strains with improved phenotypesPossible reference: Varela, C. et al. (2018) Systems-based approaches enable identification of gene targets which improve the flavour profile of low-ethanol wine yeast strains., Metab Eng, PMID 30138679
PXD010366 no publication (from MassIVE)Dataset title: Selective Permeability of Mouse Blood-Aqueous Barrier as Determined by 15N-Heavy Isotope Tracing and Mass SpectrometryPossible reference: Liu, P. et al. (2018) Selective permeability of mouse blood-aqueous barrier as determined by 15N-heavy isotope tracing and mass spectrometry., Proc Natl Acad Sci U S A, PMID 30127000
PXD010346 no publication (from MassIVE)Dataset title: Proteomics reveals localization of cuticular proteins in Anopheles gambiaePossible reference: Zhou, Y. et al. (2019) Proteomics reveals localization of cuticular proteins in Anopheles gambiae., Insect Biochem Mol Biol, PMID 30278207
PXD010328 Dataset with its publication pending (from PRIDE)Dataset title: Identification and validation of stage-associated serum biomarkers in colorectal cancer_discovery phase CPossible reference: Marín-Vicente, C. et al. (2020) Identification and Validation of Stage-Associated Serum Biomarkers in Colorectal Cancer Using MS-Based Procedures., Proteomics Clin Appl, PMID 31502404
PXD010302 Dataset with its publication pending (from iProX)Dataset title: Hepatoma-derived growth factor and high mobility group protein HMGI-C upregulated expression promote the papillary thyroid microcarcinoma metastasisPossible reference: Jin, S. et al. (2019) Proteomic analysis of the papillary thyroid microcarcinoma., Ann Endocrinol (Paris), PMID 31606199
PXD010236 no publication (from MassIVE)Dataset title: Time-Course Mass Spectrometry Data of Adipose Mesenchymal Stem Cells Acquiring Chondrogenic PhenotypePossible reference: Janus, JR. et al. (2018) Time-course mass spectrometry data of adipose mesenchymal stem cells acquiring chondrogenic phenotype., BMC Res Notes, PMID 30208918
PXD010185 Dataset with its publication pending (from PRIDE)Dataset title: Metaproteomic analysis of glacial ecosystemPossible reference: Martinez-Alonso, E. et al. (2019) Taxonomic and functional characterization of a microbial community from a volcanic englacial ecosystem in Deception Island, Antarctica., Sci Rep, PMID 31434915
PXD010170 Dataset with its publication pending (from jPOST)Dataset title: Comparative phosphoproteomic analysis of barley grains Possible reference: Ishikawa, S. et al. (2019) Comparative Phosphoproteomic Analysis of Barley Embryos with Different Dormancy during Imbibition., Int J Mol Sci, PMID 30669653
PXD010151 Dataset with its publication pending (from PRIDE)Dataset title: Proteomics of candidate Desulfatiglans TRIP_1 and identification of enzymes involved in anaerobic degradation of phenanthrenePossible reference: Kraiselburd, I. et al. (2019) Metabolic reconstruction of the genome of candidate Desulfatiglans TRIP_1 and identification of key candidate enzymes for anaerobic phenanthrene degradation., Environ Microbiol, PMID 30680888
PXD010135 Dataset with its publication pending (from PRIDE)Dataset title: In vitro - in vivo correlation of gut microbiome response to metforminPossible reference: Li, L. et al. (2019) An in vitro model maintaining taxon-specific functional activities of the gut microbiome., Nat Commun, PMID 31515476
PXD010123 Dataset with its publication pending (from PRIDE)Dataset title: Drosophila BAF complex crosslinking (Possible reference: Mashtalir, N. et al. (2018) Modular Organization and Assembly of SWI/SNF Family Chromatin Remodeling Complexes., Cell, PMID 30343899
PXD010063 no publication (from MassIVE)Dataset title: USP7 Regulates Cytokinesis through FBXO38 and KIF20B Possible reference: Georges, A. et al. (2019) USP7 Regulates Cytokinesis through FBXO38 and KIF20B., Sci Rep, PMID 30804394
PXD010060 Dataset with its publication pending (from PRIDE)Dataset title: Metaproteomic analysis of glacial ecosystemPossible reference: Martinez-Alonso, E. et al. (2019) Taxonomic and functional characterization of a microbial community from a volcanic englacial ecosystem in Deception Island, Antarctica., Sci Rep, PMID 31434915
PXD010050 Dataset with its publication pending (from jPOST)Dataset title: In presence Manganese of Meyerozyma guilliermondiiPossible reference: Ruas, FAD. et al. (2019) Manganese alters expression of proteins involved in the oxidative stress of Meyerozyma guilliermondii., J Proteomics, PMID 30414513
PXD010026 no publication (from MassIVE)Dataset title: Classification of Single Particles from Human Cell Extract Reveals Distinct StructuresPossible reference: Verbeke, EJ. et al. (2018) Classification of Single Particles from Human Cell Extract Reveals Distinct Structures., Cell Rep, PMID 29972786
PXD009990 Dataset with its publication pending (from PRIDE)Dataset title: Direct proteome labelling in fruit flies with SILAF reveals differential phosphorylation of mitochondrial proteins upon loss of OXPHOS subunitsPossible reference: Rosenberger, FA. et al. (2021) Stable Isotope Labeling of Amino Acids in Flies (SILAF) Reveals Differential Phosphorylation of Mitochondrial Proteins Upon Loss of OXPHOS Subunits., Mol Cell Proteomics, PMID 33640490
PXD009985 no publication (from MassIVE)Dataset title: MYC dephosphorylation by the PP1/PNUTS phosphatase complex regulates chromatin binding and protein stabilityPossible reference: Dingar, D. et al. (2018) MYC dephosphorylation by the PP1/PNUTS phosphatase complex regulates chromatin binding and protein stability., Nat Commun, PMID 30158517
PXD009872 no publication (from MassIVE)Dataset title: SET1A-mediated mono-methylation at K342 regulates YAP activation by blocking its nuclear export and promotes tumorigenesisPossible reference: Fang, L. et al. (2018) SET1A-Mediated Mono-Methylation at K342 Regulates YAP Activation by Blocking Its Nuclear Export and Promotes Tumorigenesis., Cancer Cell, PMID 30008322
PXD009653 Dataset with its publication pending (from jPOST)Dataset title: Histone Middle Down UVPDPossible reference: Greer, SM. et al. (2018) Extensive Characterization of Heavily Modified Histone Tails by 193 nm Ultraviolet Photodissociation Mass Spectrometry via a Middle-Down Strategy., Anal Chem, PMID 30063333
PXD009633 Dataset with its publication pending (from PRIDE)Dataset title: Proteome Profiling of PBMC-originated, iPSC-derived Lentoid Bodies at differentiation day 35Possible reference: Ali, M. et al. (2020) Generation and proteome profiling of PBMC-originated, iPSC-derived lentoid bodies., Stem Cell Res, PMID 32474394
PXD009615 no publication (from MassIVE)Dataset title: Global interactomics of Zika VirusPossible reference: Coyaud, E. et al. (2018) Global Interactomics Uncovers Extensive Organellar Targeting by Zika Virus., Mol Cell Proteomics, PMID 30037810
PXD009547 no publication (from MassIVE)Dataset title: A novel differential ion mobility interface expands the depth of proteome coverage and the sensitivity of multiplex proteomic measurementsPossible reference: Pfammatter, S. et al. (2018) A Novel Differential Ion Mobility Device Expands the Depth of Proteome Coverage and the Sensitivity of Multiplex Proteomic Measurements., Mol Cell Proteomics, PMID 30007914
PXD009545 no publication (from MassIVE)Dataset title: Alcohol-driven changes in fetal cerebral artery proteomePossible reference: Bukiya, AN. et al. (2019) Fetal Cerebral Artery Mitochondrion as Target of Prenatal Alcohol Exposure., Int J Environ Res Public Health, PMID 31067632
PXD009544 Virpi Talman, Jaakko Teppo, Päivi Pöhö, Parisa Movahedi, Anu Vaikkinen, S. Tuuli Karhu, Kajetan Trošt, Tommi Suvitaival, Jukka Heikkonen, Tapio Pahikkala, Tapio Kotiaho, Risto Kostiainen, Markku Varjosalo, Heikki Ruskoaho. Molecular Atlas of Postnatal (from MassIVE)Dataset title: Molecular atlas of postnatal mouse heart developmentPossible reference: Talman, V. et al. (2018) Molecular Atlas of Postnatal Mouse Heart Development., J Am Heart Assoc, PMID 30371266
PXD009523 Dataset with its publication pending (from PRIDE)Dataset title: JEV and ZIKV NS5 interactome .Possible reference: Kovanich, D. et al. (2019) Analysis of the Zika and Japanese Encephalitis Virus NS5 Interactomes., J Proteome Res, PMID 31199156
PXD009506 Dataset with its publication pending (from PRIDE)Dataset title: Snake Venom Extracellular vesicles (SVEVs) reveal wide molecular and functional proteome diversityPossible reference: Carregari, VC. et al. (2018) Snake Venom Extracellular vesicles (SVEVs) reveal wide molecular and functional proteome diversity., Sci Rep, PMID 30104604
PXD009486 no publication (from MassIVE)Dataset title: Hemocyanin facilitates lignocellulose digestion by marine wood-boring crustaceansPossible reference: Besser, K. et al. (2018) Hemocyanin facilitates lignocellulose digestion by wood-boring marine crustaceans., Nat Commun, PMID 30510200
PXD009474 Dataset with its publication pending (from PRIDE)Dataset title: Translocase of the Outer Membrane (TOM complex) of hydrogenosomes in Trichomonas vaginalisPossible reference: Makki, A. et al. (2019) Triplet-pore structure of a highly divergent TOM complex of hydrogenosomes in Trichomonas vaginalis., PLoS Biol, PMID 30608924
PXD009420 Dataset with its publication pending (from PRIDE)Dataset title: A proteome-integrated, carbon source dependent genetic regulatory network in Saccharomyces cerevisiaePossible reference: Garcia-Albornoz, M. et al. (2020) A proteome-integrated, carbon source dependent genetic regulatory network in Saccharomyces cerevisiae., Mol Omics, PMID 31868867
PXD009386 Dataset with its publication pending (from iProX)Dataset title: Quantitative S-nitrosylation proteome reveals the susceptibility of translational machinery to oxidized low-density lipoprotein in vascular endothelial cellsPossible reference: Xu, X. et al. (2019) The protein S-nitrosylation of splicing and translational machinery in vascular endothelial cells is susceptible to oxidative stress induced by oxidized low-density lipoprotein., J Proteomics, PMID 30630120
PXD009381 Dataset with its publication pending (from PRIDE)Dataset title: Chikungunya virus phosphoproteomicsPossible reference: Treffers, EE. et al. (2023) The alphavirus nonstructural protein 2 NTPase induces a host translational shut-off through phosphorylation of eEF2 via cAMP-PKA-eEF2K signaling., PLoS Pathog, PMID 36848386
PXD009356 Dataset with its publication pending (from PRIDE)Dataset title: Comparative platelet releasate proteome profiling of acute coronary syndrome versus stable coronary artery diseasePossible reference: Maguire, PB. et al. (2020) Comparative Platelet Releasate Proteomic Profiling of Acute Coronary Syndrome versus Stable Coronary Artery Disease., Front Cardiovasc Med, PMID 32671099
PXD009347 no publication (from MassIVE)Dataset title: Proteomics analysis of phage phiR201 infecting Yersinia enterocoliticaPossible reference: Skurnik, M. et al. (2012) Characterization of the genome, proteome, and structure of yersiniophage Ï•R1-37., J Virol, PMID 22973030
PXD009313 no publication (from MassIVE)Dataset title: Noordermeer_Shieldin_2018Possible reference: Noordermeer, SM. et al. (2018) The shieldin complex mediates 53BP1-dependent DNA repair., Nature, PMID 30022168
PXD009270 Dataset with its publication pending (from PRIDE)Dataset title: Comprehensive analysis of proteomic landscape remodeling during carcinogenesisPossible reference: Xie, F. et al. (2022) The genomic and proteomic landscape in oral lichen planus versus oral squamous cell carcinoma: a scoping review., Int J Dermatol, PMID 35575880
PXD009263 no publication (from MassIVE)Dataset title: (3S)-Lysyl hydroxylation of TRAFAC GTPases is catalyzed by the 1 Jumonji-C oxygenase JMJD7Possible reference: Markolovic, S. et al. (2018) The Jumonji-C oxygenase JMJD7 catalyzes (3S)-lysyl hydroxylation of TRAFAC GTPases., Nat Chem Biol, PMID 29915238
PXD009245 Dataset with its publication pending (from jPOST)Dataset title: TGFβ-Induced Proteins in Non-Endocrine Mouse Pituitary Cell Line TtT/GFPossible reference: Tsukada, T. et al. (2018) TGFβ signaling reinforces pericyte properties of the non-endocrine mouse pituitary cell line TtT/GF., Cell Tissue Res, PMID 29274061
PXD009200 Dataset with its publication pending (from PRIDE)Dataset title: Global hyperactivation of enhancers stabilizes human and mouse naïve pluripotencyPossible reference: Lynch, CJ. et al. (2020) Global hyperactivation of enhancers stabilizes human and mouse naive pluripotency through inhibition of CDK8/19 Mediator kinases., Nat Cell Biol, PMID 32989249
PXD009168 no publication (from MassIVE)Dataset title: Global assessment of Plk1 network dynamics identifies inhibition of PP6 as a mechanism to promote Aurora A activityPossible reference: Kettenbach, AN. et al. (2018) Global assessment of its network dynamics reveals that the kinase Plk1 inhibits the phosphatase PP6 to promote Aurora A activity., Sci Signal, PMID 29764989
PXD009160 Dataset with its publication pending (from PRIDE)Dataset title: BXD Mouse Aging Liver ProteomicsPossible reference: Williams, EG. et al. (2018) Quantifying and Localizing the Mitochondrial Proteome Across Five Tissues in A Mouse Population., Mol Cell Proteomics, PMID 29945935
PXD009152 Dataset with its publication pending (from PRIDE)Dataset title: Phosphotyrosine profiling of human cerebrospinal fluidPossible reference: Sathe, G. et al. (2018) Phosphotyrosine profiling of human cerebrospinal fluid., Clin Proteomics, PMID 30220890
PXD009130 Dataset with its publication pending (from jPOST)Dataset title: Universal plant phosphoproteomics workflow and its application to tomato signaling in response to cold stressPossible reference: Hsu, CC. et al. (2018) Universal Plant Phosphoproteomics Workflow and Its Application to Tomato Signaling in Response to Cold Stress., Mol Cell Proteomics, PMID 30006488
PXD009124 Dataset with its publication pending (from PRIDE)Dataset title: Label-free quantitative proteomic approach to investigate the effect of heat stress on Panax ginseng leavesPossible reference: Kim, SW. et al. (2019) Label-free quantitative proteomic analysis of Panax ginseng leaves upon exposure to heat stress., J Ginseng Res, PMID 30662303
PXD009054 Dataset with its publication pending (from PRIDE)Dataset title: MitoTAILS: N-terminomics profiling of mitochondrial proteolysisPossible reference: Araya, LE. et al. (2021) Deorphanizing Caspase-3 and Caspase-9 Substrates In and Out of Apoptosis with Deep Substrate Profiling., ACS Chem Biol, PMID 34553588
PXD009031 no publication (from MassIVE)Dataset title: UC_Severity_MultiomicsPossible reference: Trapecar, M. et al. (2020) Gut-Liver Physiomimetics Reveal Paradoxical Modulation of IBD-Related Inflammation by Short-Chain Fatty Acids., Cell Syst, PMID 32191873
PXD009017 Dataset with its publication pending (from PRIDE)Dataset title: Myristic acid induces proteomic changes in primary murine hepatocytesPossible reference: Speziali, G. et al. (2018) Myristic acid induces proteomic and secretomic changes associated with steatosis, cytoskeleton remodeling, endoplasmic reticulum stress, protein turnover and exosome release in HepG2 cells., J Proteomics, PMID 29654920
PXD008985 Budnik B., Levy E., Harmange G., Slavov N. Mass-spectrometry of single mammalian cells quantifies proteome heterogeneity during cell differentiation. https://doi.org/10.1101/102681. (from MassIVE)Dataset title: Mass-spectrometry of single mammalian cells quantifies proteome heterogeneity during cell differentiationPossible reference: Budnik, B. et al. (2018) SCoPE-MS: mass spectrometry of single mammalian cells quantifies proteome heterogeneity during cell differentiation., Genome Biol, PMID 30343672
PXD008974 Dataset with its publication pending (from PRIDE)Dataset title: Complexome Profiling of the mitochondrial proteome from Viscum albumPossible reference: Schröder, L. et al. (2022) Complexome Profiling of Plant Mitochondrial Fractions., Methods Mol Biol, PMID 34545489
PXD008965 Dataset with its publication pending (from PRIDE)Dataset title: KMT9 writes the histone mark H4K12me1 and controls metabolism and proliferation of castration-resistant prostate cancer cellsPossible reference: Metzger, E. et al. (2019) KMT9 monomethylates histone H4 lysine 12 and controls proliferation of prostate cancer cells., Nat Struct Mol Biol, PMID 31061526
PXD008947 Dataset with its publication pending (from jPOST)Dataset title: In depth phosphoproteomeic analysis reveal the underlying signaling of antibiotic resistancePossible reference: Steenwyk, JL. et al. (2023) Evolutionary origin, population diversity, and diagnostics for a cryptic hybrid pathogen., bioRxiv, PMID 37461539
PXD008927 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic Alterations in Multiple Myeloma: A Comprehensive Study Using Bone Marrow Interstitial Fluid and Serum SamplesPossible reference: Chanukuppa, V. et al. (2020) Proteomic Alterations in Multiple Myeloma: A Comprehensive Study Using Bone Marrow Interstitial Fluid and Serum Samples., Front Oncol, PMID 33585190
PXD008921 Dataset with its publication pending (from jPOST)Dataset title: A new tool to reveal bacterial signaling mechanisms in antibiotic treatment and resistancePossible reference: Lin, MH. et al. (2018) A New Tool to Reveal Bacterial Signaling Mechanisms in Antibiotic Treatment and Resistance., Mol Cell Proteomics, PMID 30232125
PXD008874 Dataset with its publication pending (from PRIDE)Dataset title: Eukaryotic translation initiation factor 5A regulates autophagy via translation of ATG3Possible reference: Frankel, LB. et al. (2018) EIF5A mediates autophagy via translation of ATG3., Autophagy, PMID 29973124
PXD008812 Dataset with its publication pending (from PRIDE)Dataset title: The formation of a camalexin-biosynthetic metabolonPossible reference: Mucha, S. et al. (2019) The Formation of a Camalexin Biosynthetic Metabolon., Plant Cell, PMID 31511315
PXD008714 Dataset with its publication pending (from PRIDE)Dataset title: Proteomics of CLIC4 overexpressing human pulmonary artery endothelial cellsPossible reference: Abdul-Salam, VB. et al. (2019) CLIC4/Arf6 Pathway., Circ Res, PMID 30582444
PXD008705 Dataset with its publication pending (from jPOST)Dataset title: DiPIUS_Fbxw7Possible reference: Yumimoto, K. et al. (2013) F-box and WD repeat domain-containing-7 (Fbxw7) protein targets endoplasmic reticulum-anchored osteogenic and chondrogenic transcriptional factors for degradation., J Biol Chem, PMID 23955342
PXD008618 no publication (from MassIVE)Dataset title: Diet-Induced Acetylation and SuccinylationPossible reference: Wang, F. et al. (2020) Diet-induced obesity is associated with altered expression of sperm motility-related genes and testicular post-translational modifications in a mouse model., Theriogenology, PMID 32980686
PXD008564 Dataset with its publication pending (from PRIDE)Dataset title: Aberrant Glycosylation Promotes Pancreatic InflammationPossible reference: Bhalerao, N. et al. (2023) ST6GAL1 sialyltransferase promotes acinar to ductal metaplasia and pancreatic cancer progression., JCI Insight, PMID 37643018
PXD008563 Dataset with its publication pending (from PRIDE)Dataset title: Quantitative Analysis of Global Proteome and Lysine Acetylome for Human CD4+ T Follicular Helper CellsPossible reference: Zhao, M. et al. (2021) Comparative Analysis of Global Proteome and Lysine Acetylome Between Naive CD4+ T Cells and CD4+ T Follicular Helper Cells., Front Immunol, PMID 33841426
PXD008560 no publication (from MassIVE)Dataset title: gpGrouper: A Peptide Grouping and Quantification AlgorithmPossible reference: Saltzman, AB. et al. (2018) gpGrouper: A Peptide Grouping Algorithm for Gene-Centric Inference and Quantitation of Bottom-Up Proteomics Data., Mol Cell Proteomics, PMID 30093420
PXD008557 no publication (from MassIVE)Dataset title: Quantifying homologous proteins and proteoforms Possible reference: Enk, VM. et al. (2016) Regulation of highly homologous major urinary proteins in house mice quantified with label-free proteomic methods., Mol Biosyst, PMID 27464909
PXD008550 Dataset with its publication pending (from PRIDE)Dataset title: An integrated workflow for cross-linking/mass spectrometryPossible reference: Liu, F. et al. (2015) Proteome-wide profiling of protein assemblies by cross-linking mass spectrometry., Nat Methods, PMID 26414014
PXD008489 Dataset with its publication pending (from iProX)Dataset title: Proteomic profile of ET-1 induced dysfunctional hiPS-C cellsPossible reference: Vignon-Zellweger, N. et al. (2014) Endothelin-1 overexpression and endothelial nitric oxide synthase knock-out induce different pathological responses in the heart of male and female mice., Life Sci, PMID 24355292
PXD008476 Dataset with its publication pending (from PRIDE)Dataset title: Mutant calreticulin binders analysisPossible reference: Achyutuni, S. et al. (2021) Hematopoietic expression of a chimeric murine-human CALR oncoprotein allows the assessment of anti-CALR antibody immunotherapies in vivo., Am J Hematol, PMID 33761144
PXD008439 Dataset with its publication pending (from PRIDE)Dataset title: Changes in the proteome of mediterranean sea urchin Paracentrotus lividus due to activation of its immune systemPossible reference: Inguglia, L. et al. (2020) Changes in the proteome of sea urchin Paracentrotus lividus coelomocytes in response to LPS injection into the body cavity., PLoS One, PMID 32074628
PXD008416 no publication (from MassIVE)Dataset title: Xiong_NDR1_2017Possible reference: Xiong, S. et al. (2017) Regulation of Protein Interactions by Mps One Binder (MOB1) Phosphorylation., Mol Cell Proteomics, PMID 28373297
PXD008390 no publication (from MassIVE)Dataset title: Galectins control mTOR in response to endomembrane damagePossible reference: Kumar, S. et al. (2017) Galectins and TRIMs directly interact and orchestrate autophagic response to endomembrane damage., Autophagy, PMID 28368693
PXD008384 Dataset with its publication pending (from PRIDE)Dataset title: Micro-metastases regression following primary tumor excision: a critical role for primary tumor secretomePossible reference: Shaashua, L. et al. (2020) Spontaneous regression of micro-metastases following primary tumor excision: a critical role for primary tumor secretome., BMC Biol, PMID 33158447
PXD008339 Dataset with its publication pending (from PRIDE)Dataset title: Characterisation of proteome of a novel Escherichia coli strain exhibiting mucoviscous phenotype.Possible reference: Harris, S. et al. (2018) Variant O89 O-Antigen of E. coli Is Associated With Group 1 Capsule Loci and Multidrug Resistance., Front Microbiol, PMID 30233517
PXD008313 Dataset with its publication pending (from PRIDE)Dataset title: Absolute quantification of selected photosynthetic electron transfer proteins in Chlamydomonas reinhardtii in the presence and absence of oxygenPossible reference: Nikolova, D. et al. (2018) Absolute quantification of selected photosynthetic electron transfer proteins in Chlamydomonas reinhardtii in the presence and absence of oxygen., Photosynth Res, PMID 29594952
PXD008295 no publication (from MassIVE)Dataset title: High throughput and accurate serum proteome profiling by integrated sample preparation technology and single-run data independent mass spectrometry analysisPossible reference: Lin, L. et al. (2018) High throughput and accurate serum proteome profiling by integrated sample preparation technology and single-run data independent mass spectrometry analysis., J Proteomics, PMID 29278786
PXD008282 Dataset with its publication pending (from jPOST)Dataset title: HeLa, Orbitrap Fusion Lumos, Parameter optimizationPossible reference: Greguš, M. et al. (2024) Improved Data Acquisition Settings on Q Exactive HF-X and Fusion Lumos Tribrid Orbitrap-Based Mass Spectrometers for Proteomic Analysis of Limited Samples., J Proteome Res, PMID 38690845
PXD008277 Dataset with its publication pending (from PRIDE)Dataset title: Proteome and phosphoproteome of Wip1-knockout mouse testisPossible reference: Wei, Y. et al. (2019) Integrative Proteomic and Phosphoproteomic Profiling of Testis from Wip1 Phosphatase-Knockout Mice: Insights into Mechanisms of Reduced Fertility., Mol Cell Proteomics, PMID 30361445
PXD008214 Dataset with its publication pending (from PRIDE)Dataset title: Host-pathogen dynamics through secretome analysis of stimulated macrophagesPossible reference: Khan, MM. et al. (2018) Host-pathogen dynamics through targeted secretome analysis of stimulated macrophages., J Proteomics, PMID 29572161
PXD008180 no publication (from MassIVE)Dataset title: The Functions of the COPII Gene Paralogs SEC23A and SEC23B Are Interchangeable In VivoPossible reference: Khoriaty, R. et al. (2018) Functions of the COPII gene paralogs SEC23A and SEC23B are interchangeable in vivo., Proc Natl Acad Sci U S A, PMID 30065114
PXD008159 no publication (from MassIVE)Dataset title: JCVI_Syn3APossible reference: Breuer, M. et al. (2019) Essential metabolism for a minimal cell., Elife, PMID 30657448
PXD008158 Dataset with its publication pending (from PRIDE)Dataset title: Large-scale identification and visualization of human Liver N-glycome enriched from LO2 cellsPossible reference: Xiao, K. et al. (2018) Large-scale identification and visualization of human liver N-glycome enriched from LO2 cells., Anal Bioanal Chem, PMID 29725729
PXD008114 no publication (from MassIVE)Dataset title: Differences in proteomic microglia from male and female brainsPossible reference: Hashimoto, M. et al. (2012) Analysis of microdissected neurons by 18O mass spectrometry reveals altered protein expression in Alzheimer's disease., J Cell Mol Med, PMID 21883897
PXD008045 no publication (from MassIVE)Dataset title: Acinetobacter baumannii 17978 growth temperature proteomics analysisPossible reference: De Silva, PM. et al. (2018) Effect of Incubation Temperature on Antibiotic Resistance and Virulence Factors of Acinetobacter baumannii ATCC 17978., Antimicrob Agents Chemother, PMID 29061747
PXD007997 no publication (from MassIVE)Dataset title: Proteome of Gastrointestinal Stromal Tumor-Derived ExosomesPossible reference: Atay, S. et al. (2018) Insights into the Proteome of Gastrointestinal Stromal Tumors-Derived Exosomes Reveals New Potential Diagnostic Biomarkers., Mol Cell Proteomics, PMID 29242380
PXD007974 Dataset with its publication pending (from PRIDE)Dataset title: Deep Multilayer Tissue Proteomics Identifies Molecular Networks in Alzheimer’s Disease ProgressionPossible reference: Bai, B. et al. (2020) Deep Multilayer Brain Proteomics Identifies Molecular Networks in Alzheimer's Disease Progression., Neuron, PMID 31926610
PXD007973 Dataset with its publication pending (from PRIDE)Dataset title: Moss proteomes, LC-MS/MS - proteome data analysis Possible reference: Guihur, A. et al. (2021) Quantitative proteomic analysis to capture the role of heat-accumulated proteins in moss plant acquired thermotolerance., Plant Cell Environ, PMID 33314263
PXD007922 Dataset with its publication pending (from PRIDE)Dataset title: Moss endogenous peptides, LC-MS/MSPossible reference: Fesenko, I. et al. (2018) Analysis of Endogenous Peptide Pools of Physcomitrella patens Moss., Methods Mol Biol, PMID 29476527
PXD007899 no publication (from MassIVE)Dataset title: Integrated in vivo quantitative proteomics and nutrient tracing reveals age-related metabolic rewiring of pancreatic B-cell functionPossible reference: Wortham, M. et al. (2018) Integrated In Vivo Quantitative Proteomics and Nutrient Tracing Reveals Age-Related Metabolic Rewiring of Pancreatic β Cell Function., Cell Rep, PMID 30517875
PXD007870 no publication (from MassIVE)Dataset title: Insights into the evolution of host association through the isolation and characterization of a human periodontal pathogen, Desulfobulbus oralisPossible reference: Cross, KL. et al. (2018) Insights into the Evolution of Host Association through the Isolation and Characterization of a Novel Human Periodontal Pathobiont, Desulfobulbus oralis., mBio, PMID 29535201
PXD007845 Dataset with its publication pending (from PRIDE)Dataset title: HEK293T LC-MS/MS .Possible reference: Fu, CY. et al. (2012) Zebrafish Dkk3a protein regulates the activity of myf5 promoter through interaction with membrane receptor integrin α6b., J Biol Chem, PMID 23024366
PXD007779 Dataset with its publication pending (from PRIDE)Dataset title: Effect of acadesine and overexpression of the karyopherin Kap123 on nuclear abundance of yeast proteinsPossible reference: Douillet, DC. et al. (2019) Metabolomics and proteomics identify the toxic form and the associated cellular binding targets of the anti-proliferative drug AICAR., J Biol Chem, PMID 30478173
PXD007736 no publication (from MassIVE)Dataset title: Critical Period Inhibition of NKCC1 Rectifies Synapse Development and Restores Adult Tactile Response Maps in Fragile X MicePossible reference: He, Q. et al. (2019) Critical period inhibition of NKCC1 rectifies synapse plasticity in the somatosensory cortex and restores adult tactile response maps in fragile X mice., Mol Psychiatry, PMID 29703945
PXD007707 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic Profiling Exosomes from Vascular Smooth Muscle CellPossible reference: Comelli, L. et al. (2014) Characterization of secreted vesicles from vascular smooth muscle cells., Mol Biosyst, PMID 24626815
PXD007670 Dataset with its publication pending (from PRIDE)Dataset title: Vitis vinifera rhizosphere characterization: a metaproteome approachPossible reference: Bona, E. et al. (2019) Metaproteomic characterization of theVitis vinifera rhizosphere., FEMS Microbiol Ecol, PMID 30307579
PXD007631 no publication (from MassIVE)Dataset title: Smith_AF6-RAS_2017Possible reference: Smith, MJ. et al. (2017) Evolution of AF6-RAS association and its implications in mixed-lineage leukemia., Nat Commun, PMID 29062045
PXD007609 Hempel, B.-F.; Damm, M.; Göçmen, B.; Karis, M.; Oguz, M.A.; Nalbantsoy, A.; Süssmuth, R.D. Comparative Venomics of the Vipera ammodytes transcaucasiana and Vipera ammodytes montandoni from Turkey Provides Insights into Kinship. Toxins 2018, 10 (1), 23. do (from MassIVE)Dataset title: Venomics of Vipera a. transcaucasiana and Vipera a. montandoniPossible reference: Hempel, BF. et al. (2018) Comparative Venomics of the Vipera ammodytes transcaucasiana and Vipera ammodytes montandoni from Turkey Provides Insights into Kinship., Toxins (Basel), PMID 29301241
PXD007541 no publication (from MassIVE)Dataset title: Characterization of indole-3-acetic acid biosynthesis and the effects of IAA exposure on the proteome of the plant-associated microbe Pantoea sp. YR343Possible reference: Estenson, K. et al. (2018) Characterization of Indole-3-acetic Acid Biosynthesis and the Effects of This Phytohormone on the Proteome of the Plant-Associated Microbe Pantoea sp. YR343., J Proteome Res, PMID 29464956
PXD007531 Dataset with its publication pending (from PRIDE)Dataset title: Proteomics based identification and validation of biomarkers for AMDPossible reference: Kim, HJ. et al. (2016) Proteomics-based identification and validation of novel plasma biomarkers phospholipid transfer protein and mannan-binding lectin serine protease-1 in age-related macular degeneration., Sci Rep, PMID 27605007
PXD007248 no publication (from MassIVE)Dataset title: Blood from GAS- and mock-infected micePossible reference: Almeida-Souza, F. et al. (2016) Morinda citrifolia Linn. Reduces Parasite Load and Modulates Cytokines and Extracellular Matrix Proteins in C57BL/6 Mice Infected with Leishmania (Leishmania) amazonensis., PLoS Negl Trop Dis, PMID 27579922
PXD007213 no publication (from MassIVE)Dataset title: Defining Host Responses During Systemic Bacterial Infection Through Construction of a Murine Organ Proteome AtlasPossible reference: Lapek, JD. et al. (2018) Defining Host Responses during Systemic Bacterial Infection through Construction of a Murine Organ Proteome Atlas., Cell Syst, PMID 29778837
PXD007204 Dataset with its publication pending (from PRIDE)Dataset title: Arabidopsis thaliana Col-0 wild type, deg10-1, deg10-2 and catr3-1 root proteomePossible reference: Maeda, S. et al. (2014) Nitrite transport activity of a novel HPP family protein conserved in cyanobacteria and chloroplasts., Plant Cell Physiol, PMID 24904028
PXD007197 no publication (from MassIVE)Dataset title: Comparison of genomes and proteomes of whole genome-sequenced Campylobacter jejuni from different phylogenetic backgroundsPossible reference: Clark, CG. et al. (2018) Comparison of genomes and proteomes of four whole genome-sequenced Campylobacter jejuni from different phylogenetic backgrounds., PLoS One, PMID 29293692
PXD007141 no publication (from MassIVE)Dataset title: Refinement of synapses without postsynaptic activity: Role for a 4E-BP dependent mechanismPossible reference: Chong, Y. et al. (2018) Removing 4E-BP Enables Synapses to Refine without Postsynaptic Activity., Cell Rep, PMID 29617653
PXD007108 Dataset with its publication pending (from PRIDE)Dataset title: Cigarette smoke induces mitochondrial metabolic reprogramming in lung cellsPossible reference: Solanki, HS. et al. (2018) Cigarette smoke induces mitochondrial metabolic reprogramming in lung cells., Mitochondrion, PMID 29042306
PXD007067 no publication (from MassIVE)Dataset title: Quantitative proteomics for dcas9 captured proteinsPossible reference: Gao, XD. et al. (2019) Adapting dCas9-APEX2 for subnuclear proteomic profiling., Methods Enzymol, PMID 30691651
PXD007047 no publication (from MassIVE)Dataset title: Proteomic analysis of antigen-specific serum and gut antibodies in celiac disease patientsPossible reference: Iversen, R. et al. (2017) Strong Clonal Relatedness between Serum and Gut IgA despite Different Plasma Cell Origins., Cell Rep, PMID 28877470
PXD006933 Dataset with its publication pending (from PRIDE)Dataset title: THE PROTEOME SPECIATION OF AN IMMORTALIZED CYSTIC FIBROSIS CELL LINE: NEW PERSPECTIVES ON THE PATHOPHYSIOLOGY OF THE DISEASE.Possible reference: Puglia, M. et al. (2018) The proteome speciation of an immortalized cystic fibrosis cell line: New perspectives on the pathophysiology of the disease., J Proteomics, PMID 28970102
PXD006925 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic analysis of extracellular vesicles from a Plasmodium falciparum Kenyan clinical isolate defines a core parasite secretomePossible reference: Abdi, A. et al. (2017) Proteomic analysis of extracellular vesicles from a Plasmodium falciparum Kenyan clinical isolate defines a core parasite secretome., Wellcome Open Res, PMID 28944300
PXD006883 Dataset with its publication pending (from PRIDE)Dataset title: A proteomics analysis of adventitious root formation after leaf removal in lotus (Nelumbo nucifera Gaertn.)Possible reference: Cheng, L. et al. (2018) A proteomics analysis of adventitious root formation after leaf removal in lotus (Nelumbo nucifera Gaertn.)., Z Naturforsch C J Biosci, PMID 29794259
PXD006865 Dataset with its publication pending (from PRIDE)Dataset title: Human osteoblast-derived extracellular matrix with high homology to human bone proteome is osteopromotive for mesenchymal stromal cellsPossible reference: Baroncelli, M. et al. (2018) Human Osteoblast-Derived Extracellular Matrix with High Homology to Bone Proteome Is Osteopromotive., Tissue Eng Part A, PMID 29667532
PXD006843 no publication (from MassIVE)Dataset title: GeLC-MS/MS of H37Rv and two clinical isolates of Mycobacterium tuberculosisPossible reference: Heunis, T. et al. (2017) Proteogenomic Investigation of Strain Variation in Clinical Mycobacterium tuberculosis Isolates., J Proteome Res, PMID 28820946
PXD006808 Dataset with its publication pending (from PRIDE)Dataset title: Evaluating in vitro culture medium of mouse gut microbiomePossible reference: DaSilva, NA. et al. (2019) Pomegranate ellagitannin-gut microbial-derived metabolites, urolithins, inhibit neuroinflammation in vitro., Nutr Neurosci, PMID 28784051
PXD006794 no publication (from MassIVE)Dataset title: Profiling of proteins secreted in the bovine oviduct reveals diverse functions of this luminal microenvironmentPossible reference: Pillai, VV. et al. (2017) Profiling of proteins secreted in the bovine oviduct reveals diverse functions of this luminal microenvironment., PLoS One, PMID 29155854
PXD006782 no publication (from MassIVE)Dataset title: Mechanisms connecting the conserved protein kinases Kin1, Pom1, and Ssp1 in fission yeast cell polarity and divisionPossible reference: Lee, ME. et al. (2018) Mechanisms Connecting the Conserved Protein Kinases Ssp1, Kin1, and Pom1 in Fission Yeast Cell Polarity and Division., Curr Biol, PMID 29249658
PXD006721 no publication (from MassIVE)Dataset title: Mechanisms of subzero growth in the cryophile Planococcus halocryophilus determined through proteomic analysisPossible reference: Raymond-Bouchard, I. et al. (2017) Mechanisms of subzero growth in the cryophile Planococcus halocryophilus determined through proteomic analysis., Environ Microbiol, PMID 28834033
PXD006681 no publication (from MassIVE)Dataset title: Omega-6 and omega-3 oxylipins are implicated in soybean oil-induced obesity in micePossible reference: Deol, P. et al. (2017) Omega-6 and omega-3 oxylipins are implicated in soybean oil-induced obesity in mice., Sci Rep, PMID 28970503
PXD006680 Dataset with its publication pending (from PRIDE)Dataset title: Chemoproteomics Reveals Chemical Diversity and Dynamics of 4-Oxo-2-nonenal Modifications in CellsPossible reference: Sun, R. et al. (2017) Chemoproteomics Reveals Chemical Diversity and Dynamics of 4-Oxo-2-nonenal Modifications in Cells., Mol Cell Proteomics, PMID 28814509
PXD006640 Dataset with its publication pending (from PRIDE)Dataset title: Proteomics analysis of amyloid corneal aggregates from lattice corneal dystrophy patientsPossible reference: Karring, H. et al. (2013) Serine protease HtrA1 accumulates in corneal transforming growth factor beta induced protein (TGFBIp) amyloid deposits., Mol Vis, PMID 23592924
PXD006628 no publication (from MassIVE)Dataset title: LINE-1 and the cell cycle: protein localization and functional dynamicsPossible reference: Hatanaka, Y. et al. (2013) GSE is a maternal factor involved in active DNA demethylation in zygotes., PLoS One, PMID 23560077
PXD006612 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic Analyses of Cysteine Redox in High-fat-fed and Fasted Mouse Livers: Implications for Liver Metabolic HomeostasisPossible reference: Li, Y. et al. (2018) Proteomic Analyses of Cysteine Redox in High-Fat-Fed and Fasted Mouse Livers: Implications for Liver Metabolic Homeostasis., J Proteome Res, PMID 29098862
PXD006586 no publication (from MassIVE)Dataset title: Blue light and CO2 signals converge to regulate light-induced stomatal openingPossible reference: Hiyama, A. et al. (2017) Blue light and CO2 signals converge to regulate light-induced stomatal opening., Nat Commun, PMID 29101334
PXD006567 Dataset with its publication pending (from PRIDE)Dataset title: An Insight into Glyco-microheterogeneity of Plasma von Willebrand Factor (vWF) by Mass SpectrometryPossible reference: Gashash, EA. et al. (2017) An Insight into Glyco-Microheterogeneity of Plasma von Willebrand Factor by Mass Spectrometry., J Proteome Res, PMID 28696719
PXD006565 Dataset with its publication pending (from jPOST)Dataset title: CEBPbeta interacting partners identification.Possible reference: Nishimura, R. et al. (2018) Transcriptional network systems in cartilage development and disease., Histochem Cell Biol, PMID 29308531
PXD006548 Dataset with its publication pending (from PRIDE)Dataset title: Potential molecular mechanisms of overgrazing-induced plant dwarf of sheepgrass (Leymus chinensis) analyzed using proteome dataPossible reference: Ren, W. et al. (2018) Potential molecular mechanisms of overgrazing-induced dwarfism in sheepgrass (Leymus chinensis) analyzed using proteomic data., BMC Plant Biol, PMID 29739327
PXD006521 no publication (from MassIVE)Dataset title: Massey Dolin Hepatology 2017 Hepatic matrisome response to injuryPossible reference: Massey, VL. et al. (2017) The hepatic "matrisome" responds dynamically to injury: Characterization of transitional changes to the extracellular matrix in mice., Hepatology, PMID 28035785
PXD006485 no publication (from MassIVE)Dataset title: CDK7/TFIIH regulates SETD1A/B activityPossible reference: Ebmeier, CC. et al. (2017) Human TFIIH Kinase CDK7 Regulates Transcription-Associated Chromatin Modifications., Cell Rep, PMID 28768201
PXD006452 Dataset with its publication pending (from PRIDE)Dataset title: CDK5 and GSK3 mediate neuroinflammation-induced neurodegenerationPossible reference: Reinhardt, L. et al. (2019) Dual Inhibition of GSK3β and CDK5 Protects the Cytoskeleton of Neurons from Neuroinflammatory-Mediated Degeneration In Vitro and In Vivo., Stem Cell Reports, PMID 30773488
PXD006411 Dataset with its publication pending (from MassIVE)Dataset title: The histone variant macroH2A1 is a BRCA1 ubiquitin ligase substratePossible reference: Kim, BJ. et al. (2017) The Histone Variant MacroH2A1 Is a BRCA1 Ubiquitin Ligase Substrate., Cell Rep, PMID 28564596
PXD006361 Dataset with its publication pending (from PRIDE)Dataset title: Proteomics Reveal Global Regulation of Protein SUMOylation by ATM and ATR Kinases during Replication StressPossible reference: Munk, S. et al. (2017) Proteomics Reveals Global Regulation of Protein SUMOylation by ATM and ATR Kinases during Replication Stress., Cell Rep, PMID 29020638
PXD006357 Dataset with its publication pending (from MassIVE)Dataset title: Cerebrospinal fluid markers to distinguish bacterial meningitis from cerebral malaria in childrenPossible reference: Njunge, JM. et al. (2017) Cerebrospinal fluid markers to distinguish bacterial meningitis from cerebral malaria in children., Wellcome Open Res, PMID 29181450
PXD006304 Dataset with its publication pending (from MassIVE)Dataset title: Analysis of neuronal phosphoproteome reveals PINK1 regulation of BAD function and cell deathPossible reference: Wan, H. et al. (2018) Analysis of neuronal phosphoproteome reveals PINK1 regulation of BAD function and cell death., Cell Death Differ, PMID 29234155
PXD006230 John D. Lapek, Jr., Mary K Lewinski, Jacob M Wozniak, John Guatelli, and David J Gonzalez. Quantitative temporal viromics of an inducible HIV-1 model yields insight to global host targets and phospho-dynamics associated with Vpr. Mol Cell Proteomics mcp.M (from MassIVE)Dataset title: Proteomics and Phosphoproteomics of an Inducible HIV Possible reference: Wojcechowskyj, JA. et al. (2013) Quantitative phosphoproteomics reveals extensive cellular reprogramming during HIV-1 entry., Cell Host Microbe, PMID 23684312
PXD006229 Dataset with its publication pending (from MassIVE)Dataset title: O-GlcNAcylation of fumarase maintains tumour growth under glucose deficiencyPossible reference: Wang, T. et al. (2017) O-GlcNAcylation of fumarase maintains tumour growth under glucose deficiency., Nat Cell Biol, PMID 28628081
PXD006228 Dataset with its publication pending (from MassIVE)Dataset title: Distribution of Cuticular Proteins in Different Structures of Adult Anopheles GambiaePossible reference: Vannini, L. et al. (2014) Temporal and spatial expression of cuticular proteins of Anopheles gambiae implicated in insecticide resistance or differentiation of M/S incipient species., Parasit Vectors, PMID 24428871
PXD006150 Dataset with its publication pending (from MassIVE)Dataset title: Trans-kingdom mimicry underlies ribosome customization by a poxvirus kinasePossible reference: Jha, S. et al. (2017) Trans-kingdom mimicry underlies ribosome customization by a poxvirus kinase., Nature, PMID 28636603
PXD006101 Dataset with its publication pending (from MassIVE)Dataset title: Chlamydia trachomatis ChxR is a transcriptional regulator of virulence factors that function in in vivo host pathogen interactions Possible reference: Yang, C. et al. (2017) Chlamydia trachomatis ChxR is a transcriptional regulator of virulence factors that function in in vivo host-pathogen interactions., Pathog Dis, PMID 28369275
PXD006094 no publication (from MassIVE)Dataset title: C. elegans SUP-46, an HNRNPM family RNA-binding protein that prevents paternally-mediated epigenetic sterility Possible reference: Johnston, WL. et al. (2017) C. elegans SUP-46, an HNRNPM family RNA-binding protein that prevents paternally-mediated epigenetic sterility., BMC Biol, PMID 28716093
PXD006051 Dataset with its publication pending (from PRIDE)Dataset title: Analysis of the β-catenin oncogenic interactomePossible reference: Huang, SS. et al. (2013) Linking proteomic and transcriptional data through the interactome and epigenome reveals a map of oncogene-induced signaling., PLoS Comput Biol, PMID 23408876
PXD006013 Dataset with its publication pending (from PRIDE)Dataset title: SILAC analysis of relative protein abundance in nuclei - PRF168 and PRF167Possible reference: Wang, H. et al. (2012) Chromatin-Associated Proteins Revealed by SILAC-Proteomic Analysis Exhibit a High Likelihood of Requirement for Growth Fitness under DNA Damage Stress., Int J Proteomics, PMID 22900175
PXD006012 Dataset with its publication pending (from PRIDE)Dataset title: SILAC analysis of relative protein abundance in nuclei - AG3258 and AG11498Possible reference: Wang, H. et al. (2012) Chromatin-Associated Proteins Revealed by SILAC-Proteomic Analysis Exhibit a High Likelihood of Requirement for Growth Fitness under DNA Damage Stress., Int J Proteomics, PMID 22900175
PXD005983 Dataset with its publication pending (from MassIVE)Dataset title: Properties of the Cuticular Proteins of Anopheles Gambiae as Revealed by Serial Extraction of AdultsPossible reference: Zhou, Y. et al. (2017) Properties of the cuticular proteins of Anopheles gambiae as revealed by serial extraction of adults., PLoS One, PMID 28419115
PXD005963 Dataset with its publication pending (from MassIVE)Dataset title: Couzens_MOBrecognition_MOB4pulldowns_2017Possible reference: Khan, N. et al. (2017) Expression of CD33 is a predictive factor for effect of gemtuzumab ozogamicin at different doses in adult acute myeloid leukaemia., Leukemia, PMID 27795558
PXD005930 no publication (from MassIVE)Dataset title: Biomimetic VirulomicsPossible reference: Lapek, JD. et al. (2017) Biomimetic Virulomics for Capture and Identification of Cell-Type Specific Effector Proteins., ACS Nano, PMID 28892626
PXD005830 Dataset with its publication pending (from PRIDE)Dataset title: Proteome Analysis of Non-Small Cell Lung Cancer Cell Line Secretomes and Patient Sputum Reveals Biofluid Biomarker Candidates for Cisplatin Response PredictionPossible reference: Böttger, F. et al. (2019) Proteome analysis of non-small cell lung cancer cell line secretomes and patient sputum reveals biofluid biomarker candidates for cisplatin response prediction., J Proteomics, PMID 30710758
PXD005829 Dataset with its publication pending (from PRIDE)Dataset title: The 3’-UTR of MYC couples RNA polymerase II function to ribonucleotide levelsPossible reference: Dejure, FR. et al. (2017) The MYC mRNA 3'-UTR couples RNA polymerase II function to glutamine and ribonucleotide levels., EMBO J, PMID 28408437
PXD005811 Dataset with its publication pending (from MassIVE)Dataset title: Kinobead and single-shot LC-MS profiling identifies selective PKD inhibitorsPossible reference: Golkowski, M. et al. (2017) Kinobead and Single-Shot LC-MS Profiling Identifies Selective PKD Inhibitors., J Proteome Res, PMID 28102076
PXD005802 Dataset with its publication pending (from PRIDE)Dataset title: Signaling and crosstalk of the angiotensin AT2-receptor and the receptor MASPossible reference: Horiuchi, M. et al. (2012) Regulation of angiotensin II receptors beyond the classical pathway., Clin Sci (Lond), PMID 22548405
PXD005799 no publication (from MassIVE)Dataset title: Zika Proteomic InteractomePossible reference: Garcez, PP. et al. (2017) Zika virus disrupts molecular fingerprinting of human neurospheres., Sci Rep, PMID 28112162
PXD005797 Dataset with its publication pending (from PRIDE)Dataset title: Extensive Peptide Fractionation and y1 Ion-based Interference Detection Enable Accurate Quantification by Isobaric Labeling and Mass SpectrometryPossible reference: Niu, M. et al. (2017) Extensive Peptide Fractionation and y1 Ion-Based Interference Detection Method for Enabling Accurate Quantification by Isobaric Labeling and Mass Spectrometry., Anal Chem, PMID 28194965
PXD005770 Dataset with its publication pending (from MassIVE)Dataset title: Mass-spectrometry of single mammalian cells quantifies proteome heterogeneity during cell differentiationPossible reference: Budnik, B. et al. (2018) SCoPE-MS: mass spectrometry of single mammalian cells quantifies proteome heterogeneity during cell differentiation., Genome Biol, PMID 30343672
PXD005758 Dataset with its publication pending (from PRIDE)Dataset title: A method for spatially and temporally resolved protein network interrogation in living cellsPossible reference: Lobingier, BT. et al. (2017) An Approach to Spatiotemporally Resolve Protein Interaction Networks in Living Cells., Cell, PMID 28388416
PXD005720 Dataset with its publication pending (from PRIDE)Dataset title: Reference dataset for EnCOUNTer tool developmentPossible reference: Macey, R. et al. (2021) Transillumination and optical coherence tomography for the detection and diagnosis of enamel caries., Cochrane Database Syst Rev, PMID 33502759
PXD005617 Alexander S. Dowdell, Maxwell D. Murphy, Christina Azodi, Selene K. Swanson , Laurence Florens, Shiyong Chenac & Wolfram R. Z�ckert. Comprehensive Spatial Analysis of the Borrelia burgdorferi Lipoproteome Reveals a Compartmentalization Bias Toward the B (from MassIVE)Dataset title: Comprehensive Spatial Analysis of the Borrelia burgdorferi LipoproteomePossible reference: Dowdell, AS. et al. (2017) Comprehensive Spatial Analysis of the Borrelia burgdorferi Lipoproteome Reveals a Compartmentalization Bias toward the Bacterial Surface., J Bacteriol, PMID 28069820
PXD005608 Dataset with its publication pending (from MassIVE)Dataset title: Quantitative proteomic profiling of the extracellular matrix of pancreatic islets during the angiogenic switch and insulinoma progressionPossible reference: Naba, A. et al. (2017) Quantitative proteomic profiling of the extracellular matrix of pancreatic islets during the angiogenic switch and insulinoma progression., Sci Rep, PMID 28071719
PXD005595 no publication (from MassIVE)Dataset title: Alzheimer's disease proteomicsPossible reference: Zhang, L. et al. (2021) [Mechanism of puerarin reversing SH-SY5Y cell injury induced by Aβ_(1-42) based on proteomics]., Zhongguo Zhong Yao Za Zhi, PMID 34402289
PXD005591 no publication (from MassIVE)Dataset title: Nucleoredoxin Guards against Oxidative Stress by Protecting Antioxidant EnzymesPossible reference: Kneeshaw, S. et al. (2017) Nucleoredoxin guards against oxidative stress by protecting antioxidant enzymes., Proc Natl Acad Sci U S A, PMID 28724723
PXD005560 no publication (from MassIVE)Dataset title: Identification of oxidative modifications of hemopexin and their physiological relevancePossible reference: Hahl, P. et al. (2017) Identification of oxidative modifications of hemopexin and their predicted physiological relevance., J Biol Chem, PMID 28596380
PXD005542 Dataset with its publication pending (from PRIDE)Dataset title: The papain-like cysteine proteinases NbCysP6 and NbCysP7 are highly processive enzymes with substrate specificities complementary to Nicotiana benthamiana cathepsin BPossible reference: Paireder, M. et al. (2017) The papain-like cysteine proteinases NbCysP6 and NbCysP7 are highly processive enzymes with substrate specificities complementary to Nicotiana benthamiana cathepsin B., Biochim Biophys Acta Proteins Proteom, PMID 28188928
PXD005474 no publication (from MassIVE)Dataset title: Proteomic analysis of pemphigus autoantibodies indicates a much larger, more diverse, and dynamic repertoire than determined by B-cell geneticsPossible reference: Chen, J. et al. (2017) Proteomic Analysis of Pemphigus Autoantibodies Indicates a Larger, More Diverse, and More Dynamic Repertoire than Determined by B Cell Genetics., Cell Rep, PMID 28052253
PXD005460 Dataset with its publication pending (from MassIVE)Dataset title: Ethological principles predict the neuropeptides co-opted to influence parentingPossible reference: Cunningham, CB. et al. (2017) Ethological principles predict the neuropeptides co-opted to influence parenting., Nat Commun, PMID 28145404
PXD005438 Takashi Nakasuji, Narumi Ogonuki, Tomoki Chiba, Tomomi Kato, Kumiko Shiozawa, Kenji Yamatoya, Hiromitsu Tanaka, Tadashi Kondo, Kenji Miyado, Naoyuki Miyasaka, Toshiro Kubota, Atsuo Ogura, and Hiroshi Asahara. Complementary critical functions of Zfy1 and Z (from MassIVE)Dataset title: Complementary critical functions of Zfy1 and Zfy2 in mouse spermatogenesis and reproductionPossible reference: Nakasuji, T. et al. (2017) Complementary Critical Functions of Zfy1 and Zfy2 in Mouse Spermatogenesis and Reproduction., PLoS Genet, PMID 28114340
PXD005347 Dataset with its publication pending (from PRIDE)Dataset title: Alzheimer Disease model detergent insoluble proteomesPossible reference: Ayyadevara, S. et al. (2016) Proteins that mediate protein aggregation and cytotoxicity distinguish Alzheimer's hippocampus from normal controls., Aging Cell, PMID 27448508
PXD005328 Dataset with its publication pending (from MassIVE)Dataset title: Mouse islet IRE-BP1 transgene LC-MS/MS studyPossible reference: Villafuerte, BC. et al. (2017) Over-expression of insulin-response element binding protein-1 (IRE-BP1) in mouse pancreatic islets increases expression of RACK1 and TCTP: Beta cell markers of high glucose sensitivity., Biochim Biophys Acta Proteins Proteom, PMID 27816562
PXD005279 Dataset with its publication pending (from MassIVE)Dataset title: macroH2A is a BRCA1 ubiquitin ligase substratePossible reference: Kim, BJ. et al. (2017) The Histone Variant MacroH2A1 Is a BRCA1 Ubiquitin Ligase Substrate., Cell Rep, PMID 28564596
PXD005232 Dataset with its publication pending (from PRIDE)Dataset title: N-GlycositeAtlas, a database resource for mass spectrometry-based human N-linked glycoproteins and glycosylation sitesPossible reference: Sun, S. et al. (2019) N-GlycositeAtlas: a database resource for mass spectrometry-based human N-linked glycoprotein and glycosylation site mapping., Clin Proteomics, PMID 31516400
PXD005222 Dataset with its publication pending (from PRIDE)Dataset title: Tapered-tip Capillary Electrophoresis Nano-electrospray Ionization Mass Spectrometry for Ultrasensitive Proteomics: The Mouse CortexPossible reference: Choi, SB. et al. (2017) Tapered-Tip Capillary Electrophoresis Nano-Electrospray Ionization Mass Spectrometry for Ultrasensitive Proteomics: the Mouse Cortex., J Am Soc Mass Spectrom, PMID 27853976
PXD005203 Dataset with its publication pending (from MassIVE)Dataset title: Staphylococcus aureus Secretome Profiling using Label Free QuantitationPossible reference: Burian, M. et al. (2015) Quantitative proteomics of the human skin secretome reveal a reduction in immune defense mediators in ectodermal dysplasia patients., J Invest Dermatol, PMID 25347115
PXD005181 Dataset with its publication pending (from PRIDE)Dataset title: Specific mixing facilitates the comparative quantification of phosphorylation sites with significant dysregulationsPossible reference: Liu, J. et al. (2017) Specific mixing facilitates the comparative quantification of phosphorylation sites with significant dysregulations., Anal Chim Acta, PMID 27916117
PXD005171 Dataset with its publication pending (from jPOST)Dataset title: Quantitative phosphoproteomics of colorectal cancer tissues Possible reference: Hekmat, O. et al. (2013) TIMP-1 increases expression and phosphorylation of proteins associated with drug resistance in breast cancer cells., J Proteome Res, PMID 23909892
PXD005163 Dataset with its publication pending (from jPOST)Dataset title: In-depth membrane proteomic study of breast cancer tissuesPossible reference: Muraoka, S. et al. (2013) In-depth membrane proteomic study of breast cancer tissues for the generation of a chromosome-based protein list., J Proteome Res, PMID 23153008
PXD005147 Dataset with its publication pending (from MassIVE)Dataset title: proteomic analysis of porcine extracellular vesicles isolated from adipose tissue-derived mesenchymal stem/stromal cellsPossible reference: Eirin, A. et al. (2016) Comparative proteomic analysis of extracellular vesicles isolated from porcine adipose tissue-derived mesenchymal stem/stromal cells., Sci Rep, PMID 27786293
PXD005104 Dataset with its publication pending (from PRIDE)Dataset title: The CVSC mechanically reinforces HSV-1Possible reference: Snijder, J. et al. (2017) Vertex-Specific Proteins pUL17 and pUL25 Mechanically Reinforce Herpes Simplex Virus Capsids., J Virol, PMID 28381566
PXD005089 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic profiling of brain and testis reveals the diverse changes in ribosome proteins in fmr1 knockout micePossible reference: Xu, B. et al. (2018) Proteomic Profiling of Brain and Testis Reveals the Diverse Changes in Ribosomal Proteins in fmr1 Knockout Mice., Neuroscience, PMID 29292077
PXD005037 Dataset with its publication pending (from MassIVE)Dataset title: Progeroid Syndrome Patients with ZMPSTE24 Deficiency Could Benefit When Treated with Rapamycin and DimethylsulfoxidePossible reference: Akinci, B. et al. (2017) Progeroid syndrome patients with ZMPSTE24 deficiency could benefit when treated with rapamycin and dimethylsulfoxide., Cold Spring Harb Mol Case Stud, PMID 28050601
PXD004949 Dataset with its publication pending (from PRIDE)Dataset title: Proteogenomics of adenosine-to-inosine RNA editing in fruit flyPossible reference: Kuznetsova, KG. et al. (2018) Proteogenomics of Adenosine-to-Inosine RNA Editing in the Fruit Fly., J Proteome Res, PMID 30298734
PXD004828 Dataset with its publication pending (from PRIDE)Dataset title: CRL2LRR1 is required for CMG unloading during vertebrate replication terminationPossible reference: Low, E. et al. (2020) The DNA replication fork suppresses CMG unloading from chromatin before termination., Genes Dev, PMID 32943574
PXD004679 Dataset with its publication pending (from PRIDE)Dataset title: Transcriptome and proteome studies during the development of barnacle amphitritePossible reference: Han, Z. et al. (2013) iTRAQ-based proteomic profiling of the barnacle Balanus amphitrite in response to the antifouling compound meleagrin., J Proteome Res, PMID 23540395
PXD004677 Dataset with its publication pending (from MassIVE)Dataset title: Characterization of site-specific N-glycopeptide isoforms of alpha-1-acid glycoprotein from an interlaboratory study using LC-MS/MSPossible reference: Lee, JY. et al. (2016) Characterization of Site-Specific N-Glycopeptide Isoforms of α-1-Acid Glycoprotein from an Interlaboratory Study Using LC-MS/MS., J Proteome Res, PMID 27760464
PXD004648 Dataset with its publication pending (from PRIDE)Dataset title: ER-RIME in wt-MCF7 and MCF7-LTEDPossible reference: Ribas, R. et al. (2014) Identification of chemokine receptors as potential modulators of endocrine resistance in oestrogen receptor-positive breast cancers., Breast Cancer Res, PMID 25358600
PXD004643 Dataset with its publication pending (from PRIDE)Dataset title: PP1 interactome during heart failure developmentPossible reference: Chiang, DY. et al. (2016) Regulating the regulator: Insights into the cardiac protein phosphatase 1 interactome., J Mol Cell Cardiol, PMID 27663175
PXD004629 Dataset with its publication pending (from PRIDE)Dataset title: Cancer proteome and metabolite changes linked to SHMT2Possible reference: Tong, J. et al. (2020) Cancer proteome and metabolite changes linked to SHMT2., PLoS One, PMID 32903271
PXD004590 Dataset with its publication pending (from PRIDE)Dataset title: Characterisation of the human hemostatic O-glycoproteomePossible reference: King, SL. et al. (2017) Characterizing the O-glycosylation landscape of human plasma, platelets, and endothelial cells., Blood Adv, PMID 29296958
PXD004580 Dataset with its publication pending (from MassIVE)Dataset title: Proteotranscriptomic profiling of 231-BR breast cancer cellsPossible reference: Dun, MD. et al. (2015) Proteotranscriptomic Profiling of 231-BR Breast Cancer Cells: Identification of Potential Biomarkers and Therapeutic Targets for Brain Metastasis., Mol Cell Proteomics, PMID 26041846
PXD004570 Aaron R. Goldman, Benjamin G. Bitler, Zachary Schug, Jose R. Conejo-Garcia, Rugang Zhang, and David W. Speicher. The Primary Effect on the Proteome of ARID1A-Mutated Ovarian Clear Cell Carcinoma is Downregulation of the Mevalonate Pathway at the Post (from MassIVE)Dataset title: Proteome analyses of two ovarian clear cell carcinoma cell lines with or without ARID1A manipulationPossible reference: Ambati, S. et al. (2016) Adipocyte nuclei captured from VAT and SAT., BMC Obes, PMID 27462403
PXD004495 Dataset with its publication pending (from PRIDE)Dataset title: Detection of Aggressive Prostate Cancer-Associated Glycoproteins in Urine using Glycoproteomics and Mass SpectrometryPossible reference: Jia, X. et al. (2016) Detection of aggressive prostate cancer associated glycoproteins in urine using glycoproteomics and mass spectrometry., Proteomics, PMID 27749016
PXD004399 Dataset with its publication pending (from PRIDE)Dataset title: earthworm tissue, mass-spectrometry imagingPossible reference: Geier, B. et al. (2021) Connecting structure and function from organisms to molecules in small-animal symbioses through chemo-histo-tomography., Proc Natl Acad Sci U S A, PMID 34183413
PXD004384 Jihye, et al. (submitted) (from PeptideAtlas)Dataset title: MRM analysis of serological markers for lung cancerPossible reference: Wu, HY. et al. (2015) Qualification and Verification of Serological Biomarker Candidates for Lung Adenocarcinoma by Targeted Mass Spectrometry., J Proteome Res, PMID 26120931
PXD004383 Yoneyama, et al. (submitted) (from PeptideAtlas)Dataset title: SRM analysis of human plasma for pancreatic cancer diagnosisPossible reference: Yoneyama, T. et al. (2013) Quantitative targeted absolute proteomics-based large-scale quantification of proline-hydroxylated α-fibrinogen in plasma for pancreatic cancer diagnosis., J Proteome Res, PMID 23298340
PXD004379 Shelly Rozen, et al., CSNAP Is a Stoichiometric Subunit of the COP9Signalosome 2015 13(3):585-598 (from PeptideAtlas)Dataset title: CSNAP is a novel subunit of the COP9 signalosomePossible reference: Barth, E. et al. (2016) The Evolution of COP9 Signalosome in Unicellular and Multicellular Organisms., Genome Biol Evol, PMID 27044515
PXD004374 Kopylov, et al., submitted (from PeptideAtlas)Dataset title: Quantitative proteomics of astronaut candidates plasmaPossible reference: Kopylov, AT. et al. (2016) Targeted Quantitative Screening of Chromosome 18 Encoded Proteome in Plasma Samples of Astronaut Candidates., J Proteome Res, PMID 27457493
PXD004356 Dataset with its publication pending (from PRIDE)Dataset title: Defining the interactome of human adenine nucleotide translocasesPossible reference: Lu, YW. et al. (2017) Human adenine nucleotide translocases physically and functionally interact with respirasomes., Mol Biol Cell, PMID 28404750
PXD004355 Dataset with its publication pending (from PRIDE)Dataset title: Characterization of protein deamidation by shotgun proteomicsPossible reference: Zhang, L. et al. (2012) Towards posttranslational modification proteome of royal jelly., J Proteomics, PMID 22728600
PXD004307 Dataset with its publication pending (from MassIVE)Dataset title: Large-scale identification of lysine crotonylation Possible reference: Rousseaux, S. et al. (2015) Histone Acylation beyond Acetylation: Terra Incognita in Chromatin Biology., Cell J, PMID 25870829
PXD004290 Dataset with its publication pending (from MassIVE)Dataset title: Comparing the diagnostic classification accuracy of iTRAQ, peak-area, spectral-counting and emPAI methods for relative quantification in expression proteomicsPossible reference: Dowle, AA. et al. (2016) Comparing the Diagnostic Classification Accuracy of iTRAQ, Peak-Area, Spectral-Counting, and emPAI Methods for Relative Quantification in Expression Proteomics., J Proteome Res, PMID 27546623
PXD004263 Dataset with its publication pending (from MassIVE)Dataset title: An Anatomically Resolved Comprehensive Mouse Brain Proteome Possible reference: Seeley, EH. et al. (2014) Co-registration of multi-modality imaging allows for comprehensive analysis of tumor-induced bone disease., Bone, PMID 24487126
PXD004234 79) J.G. Meyer, A.K. D?Souza, D.J. Sorensen, M.J. Rardin, A.J. Wolfe, B.W. Gibson, B. Schilling. Quantification of Lysine Acetylation and Succinylation Stoichiometry in Proteins Using Mass Spectrometric Data-Independent Acquisitions (SWATH). J. Amer. Soc. (from MassIVE)Dataset title: Quantification of Lysine Acetylation and Succinylation Stoichiometry in Proteins Using Mass Spectrometric Data-Independent Acquisitions (SWATH)Possible reference: Meyer, JG. et al. (2016) Quantification of Lysine Acetylation and Succinylation Stoichiometry in Proteins Using Mass Spectrometric Data-Independent Acquisitions (SWATH)., J Am Soc Mass Spectrom, PMID 27590315
PXD004224 Dataset with its publication pending (from MassIVE)Dataset title: The Null-Test for Peptide Identification Algorithm in Shotgun ProteomicsPossible reference: Zhang, SR. et al. (2017) The Null-Test for peptide identification algorithm in Shotgun proteomics., J Proteomics, PMID 28506863
PXD004182 Dataset with its publication pending (from PRIDE)Dataset title: HCD fragmentation of glycated peptidesPossible reference: Keilhauer, EC. et al. (2016) HCD Fragmentation of Glycated Peptides., J Proteome Res, PMID 27425404
PXD004160 Dataset with its publication pending (from MassIVE)Dataset title: Top-down venomics Mapping proteoforms and protein complexes from king cobra venomPossible reference: Melani, RD. et al. (2016) Mapping Proteoforms and Protein Complexes From King Cobra Venom Using Both Denaturing and Native Top-down Proteomics., Mol Cell Proteomics, PMID 27178327
PXD004140 Dataset with its publication pending (from PRIDE)Dataset title: Chronic p53-independent p21 expression deregulates replication licensing, leading to genomic instabilityPossible reference: Galanos, P. et al. (2016) Chronic p53-independent p21 expression causes genomic instability by deregulating replication licensing., Nat Cell Biol, PMID 27323328
PXD004136 Dataset with its publication pending (from MassIVE)Dataset title: Post-transcriptional program governing the proteome of the green alga Micromonas pusillaPossible reference: Waltman, PH. et al. (2016) Identifying Aspects of the Post-Transcriptional Program Governing the Proteome of the Green Alga Micromonas pusilla., PLoS One, PMID 27434306
PXD004071 Dataset with its publication pending (from PRIDE)Dataset title: Targeting tumor mitochondrial metabolism overcomes resistance to antiangiogenicsPossible reference: Navarro, P. et al. (2016) Targeting Tumor Mitochondrial Metabolism Overcomes Resistance to Antiangiogenics., Cell Rep, PMID 27292634
PXD004058 Dataset with its publication pending (from MassIVE)Dataset title: Cardiotoxocity of Cancer Therapy BiomarkersPossible reference: Dieci, MV. et al. (2019) Escalation and de-escalation in HER2 positive early breast cancer., Curr Opin Oncol, PMID 30325338
PXD004038 Dataset with its publication pending (from MassIVE)Dataset title: Lysine acetylation in Mycobacterium abscessus GZ002Possible reference: Guo, J. et al. (2016) Identification of Lysine Acetylation in Mycobacterium abscessus Using LC-MS/MS after Immunoprecipitation., J Proteome Res, PMID 27323652
PXD004009 Dataset with its publication pending (from PRIDE)Dataset title: A whole proteome inventory of background photocrosslinker bindingPossible reference: Kleiner, P. et al. (2017) A Whole Proteome Inventory of Background Photocrosslinker Binding., Angew Chem Int Ed Engl, PMID 27981680
PXD003982 Dataset with its publication pending (from PRIDE)Dataset title: Profiling carbonylated proteins in heart and skeletal muscle mitochondria from trained and untrained micePossible reference: Carpentieri, A. et al. (2016) Profiling Carbonylated Proteins in Heart and Skeletal Muscle Mitochondria from Trained and Untrained Mice., J Proteome Res, PMID 27571187
PXD003862 Dataset with its publication pending (from MassIVE)Dataset title: Top-down venomics of the East African green mamba and the black mambaPossible reference: Petras, D. et al. (2016) Top-down venomics of the East African green mamba, Dendroaspis angusticeps, and the black mamba, Dendroaspis polylepis, highlight the complexity of their toxin arsenals., J Proteomics, PMID 27318176
PXD003834 Dataset with its publication pending (from PRIDE)Dataset title: Role of CLRC complex in telomeric assembly of shelterin proteinsPossible reference: Shi, S. et al. (2021) Ccq1-Raf2 interaction mediates CLRC recruitment to establish heterochromatin at telomeres., Life Sci Alliance, PMID 34493579
PXD003741 Dataset with its publication pending (from MassIVE)Dataset title: UPJO_DiscoveryPossible reference: Mesrobian, HG. et al. (2013) Urinary proteome analysis in patients with stable SFU grade 4 ureteropelvic junction obstruction differs from normal., Urology, PMID 23987180
PXD003704 Dataset with its publication pending (from PRIDE)Dataset title: Thermal proteome profiling of MCF-7 breast cancer cell linePossible reference: Bailey, MA. et al. (2023) Comparative Analysis of Protein Folding Stability-Based Profiling Methods for Characterization of Biological Phenotypes., J Am Soc Mass Spectrom, PMID 36802530
PXD003681 Dataset with its publication pending (from MassIVE)Dataset title: Identification of CDK1 substrates in mitosis by quantitative phosphoproteomicsPossible reference: Petrone, A. et al. (2016) Identification of Candidate Cyclin-dependent kinase 1 (Cdk1) Substrates in Mitosis by Quantitative Phosphoproteomics., Mol Cell Proteomics, PMID 27134283
PXD003680 Dataset with its publication pending (from MassIVE)Dataset title: The venom proteome of the Pacific sea nettle, Chrysaora fuscescensPossible reference: Li, R. et al. (2014) Jellyfish venomics and venom gland transcriptomics analysis of Stomolophus meleagris to reveal the toxins associated with sting., J Proteomics, PMID 24747124
PXD003679 Dataset with its publication pending (from MassIVE)Dataset title: Reduced-representation Phosphosignatures Measured by Quantitative Targeted MSPossible reference: Abelin, JG. et al. (2016) Reduced-representation Phosphosignatures Measured by Quantitative Targeted MS Capture Cellular States and Enable Large-scale Comparison of Drug-induced Phenotypes., Mol Cell Proteomics, PMID 26912667
PXD003626 Dataset with its publication pending (from MassIVE)Dataset title: Transcriptomic and proteomic insights into innate immunity and adaptations to a symbiotic lifestyle in the gutless marine worm Olavius algarvensisPossible reference: Wippler, J. et al. (2016) Transcriptomic and proteomic insights into innate immunity and adaptations to a symbiotic lifestyle in the gutless marine worm Olavius algarvensis., BMC Genomics, PMID 27871231
PXD003571 Dataset with its publication pending (from MassIVE)Dataset title: THP_1 and human fibroblast secretomesPossible reference: Starr, AE. et al. (2012) Biochemical characterization and N-terminomics analysis of leukolysin, the membrane-type 6 matrix metalloprotease (MMP25): chemokine and vimentin cleavages enhance cell migration and macrophage phagocytic activities., J Biol Chem, PMID 22367194
PXD003481 Kai-Ting Fan, Aaron K. Rendahl, Wen-Ping Chen, Dana M. Freund, William M. Gray, Jerry D. Cohen, and Adrian D. Hegeman. Proteome scale-protein turnover analysis using high resolution mass spectrometric data from stable-isotope labeled plants. J. Proteome R (from MassIVE)Dataset title: Proteome turnover of Arabidopsis root soluble fractionPossible reference: Fan, KT. et al. (2016) Proteome Scale-Protein Turnover Analysis Using High Resolution Mass Spectrometric Data from Stable-Isotope Labeled Plants., J Proteome Res, PMID 26824330
PXD003460 Dataset with its publication pending (from MassIVE)Dataset title: Using the ubiquitin-modified proteome to monitor distinct and spatially restricted protein homeostasis dysfunctionPossible reference: Gendron, JM. et al. (2016) Using the Ubiquitin-modified Proteome to Monitor Distinct and Spatially Restricted Protein Homeostasis Dysfunction., Mol Cell Proteomics, PMID 27185884
PXD003436 Dataset with its publication pending (from PRIDE)Dataset title: FOXE3 Contributes to Peters Anomaly through Transcriptional Regulation of an Autophagy Associated Protein termed DNAJB1Possible reference: Khan, SY. et al. (2016) FOXE3 contributes to Peters anomaly through transcriptional regulation of an autophagy-associated protein termed DNAJB1., Nat Commun, PMID 27218149
PXD003400 Dataset with its publication pending (from PRIDE)Dataset title: Filter-aided sample preparation depends on filter unit shapePossible reference: Lipecka, J. et al. (2016) Sensitivity of mass spectrometry analysis depends on the shape of the filtration unit used for filter aided sample preparation (FASP)., Proteomics, PMID 27219663
PXD003392 Dataset with its publication pending (from MassIVE)Dataset title: Tagless Analysis of Protein-Protein Interactions in Desufovibrio vulgaris.Possible reference: Walian, PJ. et al. (2012) High-throughput isolation and characterization of untagged membrane protein complexes: outer membrane complexes of Desulfovibrio vulgaris., J Proteome Res, PMID 23098413
PXD003344 Robert T. Lawrence, Brian C. Searle, Ariadna Llovet, Judit Villén. Plug-and-play analysis of the human phosphoproteome by targeted high-resolution mass spectrometry. Nature Methods. 2016 Mar. doi: 10.1038/nmeth.3811. (from MassIVE)Dataset title: Plug-and-play analysis of the human phosphoproteome by targeted high-resolution mass spectrometryPossible reference: Lawrence, RT. et al. (2016) Plug-and-play analysis of the human phosphoproteome by targeted high-resolution mass spectrometry., Nat Methods, PMID 27018578
PXD003261 Dataset with its publication pending (from PRIDE)Dataset title: Vibrio cholerae VesB Analysis-posttranslational modificationsPossible reference: Gadwal, S. et al. (2018) C-terminal processing of GlyGly-CTERM containing proteins by rhombosortase in Vibrio cholerae., PLoS Pathog, PMID 30352106
PXD003184 Dataset with its publication pending (from MassIVE)Dataset title: Identifying Predictors Of Taxane-Induced Peripheral Neuropathy Using Mass Spectrometry-based Proteomics TechnologyPossible reference: Chen, EI. et al. (2015) Identifying Predictors of Taxane-Induced Peripheral Neuropathy Using Mass Spectrometry-Based Proteomics Technology., PLoS One, PMID 26710119
PXD003119 Dataset with its publication pending (from PRIDE)Dataset title: Protein stable isotope fingerprinting (P-SIF): Chocolate Pots (Yellowstone) biomassPossible reference: Gonzalez-Nayeck, AC. et al. (2022) Absence of canonical trophic levels in a microbial mat., Geobiology, PMID 35831948
PXD002923 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic analysis of Pennisetum glaucum under drought stressPossible reference: Ghatak, A. et al. (2016) Comprehensive tissue-specific proteome analysis of drought stress responses in Pennisetum glaucum (L.) R. Br. (Pearl millet)., J Proteomics, PMID 26944736
PXD002816 Dataset with its publication pending (from MassIVE)Dataset title: Differential stoichiometry among core ribosomal proteins Possible reference: Slavov, N. et al. (2015) Differential Stoichiometry among Core Ribosomal Proteins., Cell Rep, PMID 26565899
PXD002791 Dataset with its publication pending (from MassIVE)Dataset title: Ubiquitin-activated interaction traps (UBAITs) identify E3 ligase binding partnersPossible reference: O'Connor, HF. et al. (2015) Ubiquitin-Activated Interaction Traps (UBAITs) identify E3 ligase binding partners., EMBO Rep, PMID 26508657
PXD002764 Dataset with its publication pending (from PRIDE)Dataset title: A combined proteomic and targeted analysis unravels new toxic mechanisms for zinc oxide nanoparticles in macrophagesPossible reference: Aude-Garcia, C. et al. (2016) A combined proteomic and targeted analysis unravels new toxic mechanisms for zinc oxide nanoparticles in macrophages., J Proteomics, PMID 26710724
PXD002730 Dataset with its publication pending (from MassIVE)Dataset title: Multicopy single-stranded DNA directs intestinal colonization of enteric pathogensPossible reference: Elfenbein, JR. et al. (2015) Multicopy Single-Stranded DNA Directs Intestinal Colonization of Enteric Pathogens., PLoS Genet, PMID 26367458
PXD002719 Dataset with its publication pending (from PRIDE)Dataset title: Quantitative proteomic analysis of duck lung tissue during infection of avian influenzaPossible reference: Ye, Y. et al. (2022) Differential proteome response to H5N1 highly pathogenic avian influenza (HPAI) viruses infection in duck., Front Immunol, PMID 36059479
PXD002686 Dataset with its publication pending (from PRIDE)Dataset title: Short Term Immune Response to IL6 inhibition (Tocilizumab)Possible reference: Pedersen, AE. et al. (2015) Development of assay platforms for in vitro screening of Treg modulating potential of pharmacological compounds., Immunopharmacol Immunotoxicol, PMID 25367176
PXD002621 Dataset with its publication pending (from PRIDE)Dataset title: Phosphoproteomic Response To MEK InhibitionPossible reference: Lavezzari, G. et al. (2012) Monitoring phosphoproteomic response to targeted kinase inhibitors using reverse-phase protein microarrays., Methods Mol Biol, PMID 21960225
PXD002609 Dataset with its publication pending (from MassIVE)Dataset title: Quantitative Phosphoproteomics reveals new roles for PP6 in chromosome condensation and segregationPossible reference: Rusin, SF. et al. (2015) Quantitative phosphoproteomics reveals new roles for the protein phosphatase PP6 in mitotic cells., Sci Signal, PMID 26462736
PXD002603 Dataset with its publication pending (from PRIDE)Dataset title: Proteomics Analyses of Mycelium and Cysts of Phytophthora capsiciPossible reference: Pang, Z. et al. (2017) Quantitative proteomics links metabolic pathways to specific developmental stages of the plant-pathogenic oomycete Phytophthora capsici., Mol Plant Pathol, PMID 27019332
PXD002497 Dataset with its publication pending (from MassIVE)Dataset title: Growth condition-dependent cell surface proteome analysis of Enterococcus faeciumPossible reference: Sinnige, JC. et al. (2015) Growth condition-dependent cell surface proteome analysis of Enterococcus faecium., Proteomics, PMID 26316380
PXD002447 Dataset with its publication pending (from MassIVE)Dataset title: Hydrophilic Interaction Chromatography Using a Meter-Scale Monolithic Silica Capillary ColumnPossible reference: Horie, K. et al. (2014) Hydrophilic interaction chromatography using a meter-scale monolithic silica capillary column for proteomics LC-MS., Anal Chem, PMID 24666247
PXD002401 Dataset with its publication pending (from PRIDE)Dataset title: Multi-omics toxicity profiling of engineered nanomaterialsPossible reference: Scala, G. et al. (2018) Multi-omics analysis of ten carbon nanomaterials effects highlights cell type specific patterns of molecular regulation and adaptation., NanoImpact, PMID 32140619
PXD002392 Dataset with its publication pending (from PRIDE)Dataset title: Dithiothreitol (DTT) acts as a specific, UV-inducible cross-linker in elucidation of protein-RNA interactionsPossible reference: Zaman, U. et al. (2015) Dithiothreitol (DTT) Acts as a Specific, UV-inducible Cross-linker in Elucidation of Protein-RNA Interactions., Mol Cell Proteomics, PMID 26450613
PXD002288 Dataset with its publication pending (from PRIDE)Dataset title: PTSD mouse amygdala proteome .Possible reference: Kao, CY. et al. (2016) Fluoxetine Treatment Rescues Energy Metabolism Pathway Alterations in a Posttraumatic Stress Disorder Mouse Model., Mol Neuropsychiatry, PMID 27606320
PXD002112 Dataset with its publication pending (from PRIDE)Dataset title: Feedback circuitry between miR-218 repression and RTK activation in glioblastomaPossible reference: Mathew, LK. et al. (2015) Feedback circuitry between miR-218 repression and RTK activation in glioblastoma., Sci Signal, PMID 25943352
PXD002096 Dataset with its publication pending (from PRIDE)Dataset title: The influence of simulated microgravity on the proteome of Daphnia magnaPossible reference: Trotter, B. et al. (2015) The influence of simulated microgravity on the proteome of Daphnia magna., NPJ Microgravity, PMID 28725717
PXD002027 Dataset with its publication pending (from PRIDE)Dataset title: Plasma membrane proteomics in the maize primary root elongation zone under water stress conditionsPossible reference: Voothuluru, P. et al. (2016) Plasma membrane proteomics in the maize primary root growth zone: novel insights into root growth adaptation to water stress., Plant Cell Environ, PMID 27341663
PXD002017 Dataset with its publication pending (from MassIVE)Dataset title: Proteomic Mapping of Mitochondria in Living Cells via Spatially Restricted Enzymatic TaggingPossible reference: Rhee, HW. et al. (2013) Proteomic mapping of mitochondria in living cells via spatially restricted enzymatic tagging., Science, PMID 23371551
PXD002008 Dataset with its publication pending (from MassIVE)Dataset title: MS1 Peptide Ion Intensity Chromatograms in MS2 (SWATH) Data Independent AcquisitionsPossible reference: Rardin, MJ. et al. (2015) MS1 Peptide Ion Intensity Chromatograms in MS2 (SWATH) Data Independent Acquisitions. Improving Post Acquisition Analysis of Proteomic Experiments., Mol Cell Proteomics, PMID 25987414
PXD001887 Dataset with its publication pending (from MassIVE)Dataset title: Deep, quantitative coverage of the lysine acetylome using novel anti-acetyl-lysine antibodiesPossible reference: Svinkina, T. et al. (2015) Deep, Quantitative Coverage of the Lysine Acetylome Using Novel Anti-acetyl-lysine Antibodies and an Optimized Proteomic Workflow., Mol Cell Proteomics, PMID 25953088
PXD001769 Dataset with its publication pending (from PRIDE)Dataset title: A Circular RNA Controls Ribosomal RNA Maturation and Atherosclerosis in HumansPossible reference: Holdt, LM. et al. (2016) Circular non-coding RNA ANRIL modulates ribosomal RNA maturation and atherosclerosis in humans., Nat Commun, PMID 27539542
PXD001748 no publication (from PeptideAtlas)Dataset title: Candidate Biomarkers for Invasive Aspergillosis, VerificationPossible reference: Brasier, AR. et al. (2015) Improved Detection of Invasive Pulmonary Aspergillosis Arising during Leukemia Treatment Using a Panel of Host Response Proteins and Fungal Antigens., PLoS One, PMID 26581097
PXD001746 Graaf, et al. (from PeptideAtlas)Dataset title: Signal transduction reaction monitoring deciphers site-specific PI3K-mTOR/MAPK pathway dynamicsPossible reference: de Graaf, EL. et al. (2015) Signal Transduction Reaction Monitoring Deciphers Site-Specific PI3K-mTOR/MAPK Pathway Dynamics in Oncogene-Induced Senescence., J Proteome Res, PMID 26011226
PXD001745 Unpublished (from PeptideAtlas)Dataset title: Automated Absolute and Relative Quantification of SRM DataPossible reference: Nasso, S. et al. (2015) Ariadne's Thread: A Robust Software Solution Leading to Automated Absolute and Relative Quantification of SRM Data., J Proteome Res, PMID 26123309
PXD001733 Dataset with its publication pending (from MassIVE)Dataset title: Lenalidomide Causes Selective Degradation of IKZF1 and IKZF3 in Multiple Myeloma CellsPossible reference: Krönke, J. et al. (2014) Lenalidomide causes selective degradation of IKZF1 and IKZF3 in multiple myeloma cells., Science, PMID 24292625
PXD001711 Dataset with its publication pending (from PRIDE)Dataset title: Casein kinase 2 (CK2) phosphorylates the deubiquitylase OTUB1 at Ser16 to trigger its nuclear localisation.Possible reference: Herhaus, L. et al. (2015) Casein kinase 2 (CK2) phosphorylates the deubiquitylase OTUB1 at Ser16 to trigger its nuclear localization., Sci Signal, PMID 25872870
PXD001634 Dataset with its publication pending (from MassIVE)Dataset title: KCMF1 links RAD6 to UBR4 and lysosome-mediated degradationPossible reference: Hong, JH. et al. (2015) KCMF1 (potassium channel modulatory factor 1) Links RAD6 to UBR4 (ubiquitin N-recognin domain-containing E3 ligase 4) and lysosome-mediated degradation., Mol Cell Proteomics, PMID 25582440
PXD001618 Dataset with its publication pending (from PRIDE)Dataset title: Phosphatase POPX2 secretome SILACPossible reference: Zhang, S. et al. (2017) Phosphatase POPX2 Exhibits Dual Regulatory Functions in Cancer Metastasis., J Proteome Res, PMID 27976581
PXD001614 Dataset with its publication pending (from MassIVE)Dataset title: Potato Aphid Salivary Proteome: Identification of Aphid Phosphoproteins and Tomato Host ProteinsPossible reference: Chaudhary, R. et al. (2015) Potato aphid salivary proteome: enhanced salivation using resorcinol and identification of aphid phosphoproteins., J Proteome Res, PMID 25722084
PXD001491 Dataset with its publication pending (from PRIDE)Dataset title: The metabolic background is a global player in Saccharomyces gene expression epistasisPossible reference: Alam, MT. et al. (2016) The metabolic background is a global player in Saccharomyces gene expression epistasis., Nat Microbiol, PMID 27572163
PXD001306 Dataset with its publication pending (from PRIDE)Dataset title: Cell line adaptation Changes in the proteome level during a step-wise adaptation of an adherent Madin Darby canine kidney (MDCK) cell line Possible reference: Kluge, S. et al. (2015) Monitoring changes in proteome during stepwise adaptation of a MDCK cell line from adherence to growth in suspension., Vaccine, PMID 25891398
PXD001092 Dataset with its publication pending (from MassIVE)Dataset title: Extracellular Matrix Signatures of Human Primary Metastatic Colon Cancers and their Liver MetastasesPossible reference: Naba, A. et al. (2014) Extracellular matrix signatures of human primary metastatic colon cancers and their metastases to liver., BMC Cancer, PMID 25037231
PXD000976 Dataset with its publication pending (from PRIDE)Dataset title: Rat Neural Stem Cell PhosphoproteomePossible reference: Wang, S. et al. (2016) Quantitative Phosphoproteomic Study Reveals that Protein Kinase A Regulates Neural Stem Cell Differentiation Through Phosphorylation of Catenin Beta-1 and Glycogen Synthase Kinase 3β., Stem Cells, PMID 27097102
PXD000812 Dataset with its publication pending (from PRIDE)Dataset title: Analysis of WRN protein interactomePossible reference: Abbasi, S. et al. (2019) Mapping the Ku Interactome Using Proximity-Dependent Biotin Identification in Human Cells., J Proteome Res, PMID 30585729
PXD000703 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic Analysis of Artemisia annuaPossible reference: Lu, JJ. et al. (2012) Dihydroartemisinin-induced inhibition of proliferation in BEL-7402 cells: an analysis of the mitochondrial proteome., Mol Med Rep, PMID 22580600
PXD000614 no publication (from PeptideAtlas)Dataset title: Investigation of proximal phosphorylation and lysine acetylation crosstalkPossible reference: Parker, BL. et al. (2014) Structural basis for phosphorylation and lysine acetylation cross-talk in a kinase motif associated with myocardial ischemia and cardioprotection., J Biol Chem, PMID 25008320
PXD000234 Dataset with its publication pending (from PRIDE)Dataset title: Proteomic analysis of serum from Chikungunya patientsPossible reference: Mishra, N. et al. (2018) Diagnosis of Zika Virus Infection by Peptide Array and Enzyme-Linked Immunosorbent Assay., mBio, PMID 29511073
