PXD033661

PXD033661 is an original dataset announced via ProteomeXchange.

Title	Persistent Dysfunction of Innate Immune and Clotting Factors Detected in Saliva and Blood Plasma after COVID-19
Description	It is becoming increasingly clear that individuals recovered from acute coronavirus disease 2019 (COVID-19) can develop into long-term sequelae termed ‘long coronavirus disease’ or ‘post-acute sequile SARS-CoV-2 infection’ (PACS). While most common manifestations of PACS are presented as systemic and long term, the early molecular mechanisms involved in the development of the sequelae remain elusive. To further understand immune responses globally after exposure to the virus, we surveyed plasma and saliva samples from COVID-19 and control - pre-pandemic- individuals. Initial serology investigation verified robust IgA and IgG responses with neutralizing activity to the SARS-CoV-2 and showed detection and positive correlations between paired plasma and saliva. To monitor immune pathways, we assayed our biofluids via shotgun proteomics. A dysbiosis in the proteomic profiles specially in persistent inflammatory patterns was detected in COVID-19 cases, revealing dysfunction of neutrophil-fibrinogen axis, relevant to immune and clotting functions. Overall our results reveal early dysbiotic immune markers, even when protective antibodies are found, demonstrating that serology is not sufficient to understand the health status. Additionally, we present saliva as a viable means to monitor serology, chronic inflammation and immune functions. Further delineation of the disease pathogenesis may provide biomarker and therapeutic targets to patients at risk to develop Post acute sequelae SARS-CoV-2 infection (PASC).
HostingRepository	PRIDE
AnnounceDate	2025-06-25
AnnouncementXML	Submission_2025-06-25_03:04:14.797.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	wan choi
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	monohydroxylated residue
Instrument	Q Exactive HF

Revision	Datetime	Status	ChangeLog Entry
0	2022-05-05 00:23:49	ID requested
⏵ 1	2025-06-25 03:04:15	announced

Dataset with its publication pending

ProteomeXchange project tag: Sars-cov-2, Covid-19

submitter keyword: Pathology, secretory IgA, SARS-CoV-2, Post acute sequelae SARS-CoV-2 infection (PASC), Clotting, Proteomics,Saliva, COVID-19, chronic inflammation

Marcelo Freire
contact affiliation	JCVI, Human Genomic Medicine, United States
contact email	mfreire@jcvi.org
lab head
wan choi
contact affiliation	JCVI
contact email	wchoi@jcvi.org
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/06/PXD033661

PRIDE project URI

• PRIDE
  1. PXD033661
     1. Label: PRIDE project
     2. Name: Persistent Dysfunction of Innate Immune and Clotting Factors Detected in Saliva and Blood Plasma after COVID-19