⮝ Full datasets listing
PXD055648
PXD055648 is an original dataset announced via ProteomeXchange.
Dataset Summary
| Title | Nitrogen Limitation Causes a Seismic Shift in the Redox States and Phosphorylation of Proteins Implicated in Carbon Flux and Lipidome Remodeling for Rhodotorula toruloides |
| Description | Global proteomics, redox proteomics, and phosphoproteomics data from a time course experiment using an oleaginous yeast; the yeast was cultivated in nitrogen-rich and nitrogen-limited conditions using glucose as the carbon source; time points 24, 48, and 72 hours; 3-6 biological replicates. Samples were digested with trypsin and Lys-C, then analyzed by LC-MS/MS. Data were searched with MS-GF+ and MASIC using PNNL's DMS processing pipeline. |
| HostingRepository | MassIVE |
| AnnounceDate | 2026-04-20 |
| AnnouncementXML | Submission_2026-04-20_16:53:12.814.xml |
| DigitalObjectIdentifier | |
| ReviewLevel | Non peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Supported dataset by repository |
| PrimarySubmitter | Matthew Monroe |
| SpeciesList | scientific name: Rhodotorula toruloides; NCBI TaxID: 5286; |
| ModificationList | Oxidation; TMTpro; Phospho; Nethylmaleimide |
| Instrument | Orbitrap Exploris 480 |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|---|---|---|
| 0 | 2024-09-06 21:51:18 | ID requested | |
| ⏵ 1 | 2026-04-20 16:53:13 | announced |
Publication List
| no publication |
Keyword List
| submitter keyword: redox proteomics, phosphoproteomics, lipidomics, PTM, SP3, oleaginous yeast, nitrogen limitation |
Contact List
| Tong Zhang | |
|---|---|
| contact affiliation | Pacific Northwest National Laboratory |
| contact email | tong.zhang@pnnl.gov |
| lab head | |
| Matthew Monroe | |
| contact affiliation | Pacific Northwest National Laboratory |
| contact email | matthew.monroe@pnnl.gov |
| dataset submitter | |
Full Dataset Link List
| MassIVE dataset URI |
| Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive-ftp.ucsd.edu/v08/MSV000095798/ |
