RPXD034685 is container for
one or more analyses. The general container metadata is provided below and the table under Dataset History provides links to the various reanalyses have been provided (if any) in this container.
Reanalysis Container Summary
Title | PXD019645-1 Data, reagents, assays and merits of proteomics for SARS-CoV-2 research and testing [Reanalysis: PXD019645] |
Description | As the SARS-CoV-2 pandemic continues to spread, thousands of scientists around the globe have changed research direction to understand better how the virus works and to find out how it may be tackled. To facilitate proteomic research on SARS-CoV-2, we presents deep-scale proteomes of common cell line models (Calu-3, Caco-2, ACE2 transfected A549 and Vero E6) and monitors changes of the proteome upon viral infection in Vero E6 cells. We provide high quality proteome expression data that can be used to refine the annotation of protein coding regions of the Vero E6 cell line genome. Further, we generated spectral libraries that can be used DIA cell line experiments or PRM assays of SARS-CoV-2 proteins. [Original project description] |
HostingRepository | jPOST |
AnnounceDate | 2023-03-25 |
AnnouncementXML | Submission_2023-03-25_06:55:30.987.xml |
DigitalObjectIdentifier | https://dx.doi.org/10.6019/RPXD034685 |
ReviewLevel | Non peer-reviewed dataset |
DatasetOrigin | Reanalysis of PXD019645 |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | jPOST reanalysis |
SpeciesList | scientific name: cell culture; NCBI TaxID: BTO:0000214; |
ModificationList | S-carboxamidomethyl-L-cysteine; unknown modification; L-methionine sulfoxide |
Instrument | Orbitrap Fusion Lumos |
Dataset History
Reanalysis | Revision | Datetime | Status | Title / ChangeLog Entry |
| 0 | 2022-06-19 17:29:12 | ID requested | |
0 | 1 | 2023-03-25 06:55:31 | announced | PXD019645-1 Data, reagents, assays and merits of proteomics for SARS-CoV-2 research and testing [Reanalysis: PXD019645] |
Publication List
Keyword List
submitter keyword: reanalysis, SARS-CoV-2, stable isotope labeling, parallel reaction monitoring, Vero E6, ACE2, infectome, COVID-19, clinical proteomics |
Contact List
Yasushi Ishihama |
lab head | |
jPOST reanalysis |
contact affiliation | jPOST |
dataset submitter | |
Full Dataset Link List
jPOST dataset URI |
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.jpostdb.org/JPST001769/ |