PXD024490

PXD024490 is an original dataset announced via ProteomeXchange.

Title	Quantitative proteomics and transcriptomics analysis of fruit development and ripening in watermelon
Description	Here, we used RNA sequencing and tandem mass tag (TMT)–based quantitative proteomics technology to study the comprehensive mRNA and protein expression changes during fruit development and ripening in watermelon. A total of 6,226 proteins were quantified, and the number of quantitative proteins is the largest in fruit proteome to date, comparable to studies in model organisms such as rice and Arabidopsis. Omics analysis showed that smaller changes occurred in protein abundance compared to mRNA abundance. Furthermore, protein and transcript abundance were poorly correlated, and the correlation coefficients decreased during fruit development and ripening. Our comprehensive transcriptomic and proteomic data offer a valuable resource for watermelon research, and provide new insights into the molecular mechanisms underlying complex regulatory networks of fruit ripening in watermelon.
HostingRepository	PRIDE
AnnounceDate	2022-04-10
AnnouncementXML	Submission_2022-04-10_15:41:46.620.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	yu yongtao
SpeciesList	scientific name: Citrullus lanatus; NCBI TaxID: 3654;
ModificationList	No PTMs are included in the dataset
Instrument	Q Exactive Plus

Revision	Datetime	Status	ChangeLog Entry
0	2021-03-03 02:46:14	ID requested
⏵ 1	2022-04-10 15:41:46	announced

Dataset with its publication pending

submitter keyword: TMT

watermelon

fruit ripening

Yongtao yu
contact affiliation	Beijing Academy of Agriculture and Forestry Sciences
contact email	yuyongtao626@126.com
lab head
yu yongtao
contact affiliation	Beijing Academy of Agriculture and Forestry Sciences
contact email	yuyongtao626@126.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD024490

PRIDE project URI

• PRIDE
  1. PXD024490
     1. Label: PRIDE project
     2. Name: Quantitative proteomics and transcriptomics analysis of fruit development and ripening in watermelon