PXD030609

PXD030609 is an original dataset announced via ProteomeXchange.

Title	Two closely related white rot fungi, Obba rivulosa and Gelatoporia subvermispora, produce orthologous plant cell wall degrading enzymes for spruce wood degradation
Description	Unique ability of basidiomycete white rot fungi to degrade all components of plant cell walls makes them indispensable organisms in global carbon cycle. In this study, we analyzed proteomes of two closely related white rot fungi, Obba rivulosa and Gelatoporia subvermispora, while growing on solid spruce wood, and defined a core set of CAZymes that was shared between these species including the orthologous enzymes. Similar production pattern of these CAZymes indicate their key role in plant biomass degradation and need for their further biochemical characterization. The obtained results give an insight into specific enzymes and enzyme sets that are produced during the degradation of solid spruce wood. These findings expand the knowledge on enzyme production in nature-mimicking conditions and may contribute to exploitation of white rot fungi and their enzymes in biotechnological applications.
HostingRepository	PRIDE
AnnounceDate	2022-08-08
AnnouncementXML	Submission_2022-08-08_11:26:16.555.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD030609
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Marcos Di Falco
SpeciesList	scientific name: Gelatoporia subvermispora; NCBI TaxID: 42742; scientific name: Obba rivulosa; NCBI TaxID: 1052685;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	LTQ Orbitrap Velos

Revision	Datetime	Status	ChangeLog Entry
0	2021-12-22 11:23:07	ID requested
⏵ 1	2022-08-08 11:26:16	announced

Dataset with its publication pending

submitter keyword: Obba rivulosa, Gelatoporia subvermispora, proteome, CAZymes, lignin biodegradation, LC-MS/MS, white rot fungi

Kristiina Sari Hildén
contact affiliation	Department of Microbiology Faculty of Agriculture and Forestry University of Helsinki Latokartanonkaari 7 Helsinki Finland
contact email	kristiina.s.hilden@helsinki.fi
lab head
Marcos Di Falco
contact affiliation	Concordia University
contact email	marcos.difalco@concordia.ca
dataset submitter

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PRIDE project URI

• PRIDE
  1. PXD030609
     1. Label: PRIDE project
     2. Name: Two closely related white rot fungi, Obba rivulosa and Gelatoporia subvermispora, produce orthologous plant cell wall degrading enzymes for spruce wood degradation