<<< Full experiment listing

PXD023491

PXD023491 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleA long-term 3D organoid (tubuloid) model of the adult mouse kidney
DescriptionThe aim of the project was the analysis of the bulk proteome and phosphoproteome in 3D organoids (tubuloids) from the adult mouse kidney. Proteome (nearly 9000 proteins) and phosphoproteome (nearly 16000 phospho sites) were compared in three biological (independent) replicates of epithelial organoids (early passage and long-term, 3-month cultures) and freshly isolated, MAC-sorted, Epcam-positive kidney epithelial cells. After collection of the organoids, Matrigel was removed using a non-enzymatic solution.
HostingRepositoryPRIDE
AnnounceDate2024-10-22
AnnouncementXMLSubmission_2024-10-22_06:31:33.665.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterOliver Popp
SpeciesList scientific name: Mus musculus (Mouse); NCBI TaxID: 10090;
ModificationListphosphorylated residue
InstrumentQ Exactive HF-X
Dataset History
RevisionDatetimeStatusChangeLog Entry
02021-01-08 07:40:08ID requested
12024-02-26 01:56:50announced
22024-10-22 06:31:34announced2024-10-22: Updated project metadata.
Publication List
Dataset with its publication pending
Keyword List
submitter keyword: proteomics,organoids
Contact List
Walter Birchmeier
contact affiliationSignal Transduction in Development and Cancer Cancer Research Program Max Delbrueck Center for Molecular Medicine (MDC) in the Helmholtz Association Berlin, Germany
contact emailwbirch@mdc-berlin.de
lab head
Oliver Popp
contact affiliationMDC Berlin
contact emailoliver.popp@mdc-berlin.de
dataset submitter
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/02/PXD023491
PRIDE project URI
Repository Record List
[ + ]