PXD058620

PXD058620 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	High-throughput proteomic and phosphoproteomic analysis of formalin-fixed paraffin-embedded tissue
Description	Using the newly released Orbitrap Astral with short, 24-minute gradients, the workflow identifies up to 10,000 unique proteins and around 11,000 localized phosphosites in LUAD FFPE tissue. This high-throughput, scalable workflow advances biomarker discovery and proteomic research in archival tissue samples.
HostingRepository	MassIVE
AnnounceDate	2025-07-28
AnnouncementXML	Submission_2025-07-28_14:20:47.850.xml
DigitalObjectIdentifier
ReviewLevel	Non peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Moe Haines
SpeciesList	scientific name: Homo sapiens; common name: human; NCBI TaxID: 9606; scientific name: Mus musculus; common name: house mouse; NCBI TaxID: 10090;
ModificationList	Oxidation; Carbamidomethyl; Acetyl; Phospho; Met-loss
Instrument	timsTOF HT; Orbitrap Exploris 480; Orbitrap Astral

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2024-12-05 09:38:47	ID requested
⏵ 1	2025-07-28 14:20:48	announced

Publication List

no publication

no publication

Keyword List

submitter keyword: FFPE, DIA, DatasetType:Proteomics

submitter keyword: FFPE, DIA, DatasetType:Proteomics

Contact List

Steven A. Carr
contact affiliation	Broad Institute of MIT and Harvard
contact email	scarr@broadinstitute.org
lab head
Moe Haines
contact affiliation	Broad Institute
contact email	haines@broadinstitute.org
dataset submitter

Full Dataset Link List

MassIVE dataset URI
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive-ftp.ucsd.edu/v10/MSV000096596/

MassIVE dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive-ftp.ucsd.edu/v10/MSV000096596/