PXD015291

PXD015291 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Comprehensive spectral library from the pathogenic bacterium Streptococcus pneumoniae with focus on phosphoproteins
Description	In this study, a comprehensive spectral library for S. pneumoniae with an emphasis on phosphopeptide spectra was compiled. In total, 76% of the theoretical S. pneumoniae proteins were stored in a spectral library. Additionally, in combination with classical database search algorithms and the spectral library search, identification of 128 phosphoproteins was feasible. The phosphopeptides in the spectral library were manually validated using synthetic phosphopeptides to improve the quality of the library spectra and to minimize false positive spectra.
HostingRepository	MassIVE
AnnounceDate	2020-03-27
AnnouncementXML	Submission_2020-03-27_03:18:04.xml
DigitalObjectIdentifier
ReviewLevel	Non peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Christian Hentschker
SpeciesList	scientific name: Streptococcus pneumoniae D39;
ModificationList	Thiophospho
Instrument	LTQ Velos; LTQ Orbitrap

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2019-09-03 02:44:31	ID requested
⏵ 1	2020-03-27 03:18:05	announced

Publication List

no publication

no publication

Keyword List

submitter keyword: Phosphoproteome, Post-translational modifications, Protein identification, Gel-free proteomics, Manual validation, Spectral library searching, Streptococcus pneumoniae

submitter keyword: Phosphoproteome, Post-translational modifications, Protein identification, Gel-free proteomics, Manual validation, Spectral library searching, Streptococcus pneumoniae

Contact List

Doerte Becher
contact affiliation	Microbiology, University of Greifswald
contact email	dbecher@uni-greifswald.de
lab head
Christian Hentschker
contact affiliation	Uni Greifswald
contact email	christian.hentschker@uni-greifswald.de
dataset submitter

Full Dataset Link List

MassIVE dataset URI
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000084269/

MassIVE dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000084269/