PXD039183 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | The autophagy receptor NBR1 directs the clearance of photodamaged chloroplasts |
Description | The ubiquitin-binding NBR1 autophagy receptor plays a prominent role in recognizing ubiquitylated protein aggregates for vacuolar degradation during macroautophagy. Here, we show that upon exposing Arabidopsis plants to intense light, NBR1 associates with photodamaged chloroplasts independently of ATG7, a core component of the canonical autophagy machinery. NBR1 coats both the surface and interior of chloroplasts which is then followed by direct engulfment of the organelle into the central vacuole via a microautophagy-type process. The relocalization of NBR1 into chloroplasts does not require the chloroplast translocon complexes embedded in the envelope but is instead greatly enhanced by removing the self-oligomerization mPB1 domain of NBR1. The delivery of NBR1-decorated chloroplasts into vacuoles depends on the ubiquitin-binding UBA2 domain of NBR1 but is independent of the E3 ligases SP1 and PUB4, known to direct the ubiquitylation of chloroplast surface proteins. Compared to wild type plants, nbr1 mutants have altered levels of a subset of chloroplast proteins and display abnormal chloroplast density and sizes upon high light exposure. We postulate that, as photodamaged chloroplasts lose envelope integrity, cytosolic ligases reach the chloroplast interior to ubiquitylate thylakoid and stroma proteins which are then recognize by NBR1 for autophagic clearance. This study uncovers a new function of NBR1 in the degradation of damaged chloroplasts by microautophagy. |
HostingRepository | PRIDE |
AnnounceDate | 2023-01-16 |
AnnouncementXML | Submission_2023-01-16_11:04:10.354.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Kuo-EnChen |
SpeciesList | scientific name: Arabidopsis thaliana (Mouse-ear cress); NCBI TaxID: 3702; |
ModificationList | carbamoylated residue; acetylated residue |
Instrument | Q Exactive HF |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2023-01-02 19:12:40 | ID requested | |
⏵ 1 | 2023-01-16 11:04:10 | announced | |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: microautophagy, ubiquitin.,NBR1, chlorophagy |
Contact List
Richard D.Vierstra |
contact affiliation | Biology department, Washington University in Saint Louis, Saint Louis, MO, USA |
contact email | rdvierstra@wustl.edu |
lab head | |
Kuo-EnChen |
contact affiliation | Department of Biology, Washington University in St. Louis |
contact email | kuo-en@wustl.edu |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD039183
- Label: PRIDE project
- Name: The autophagy receptor NBR1 directs the clearance of photodamaged chloroplasts