PXD047022 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | A common gene signature of the right ventricle in failing rat and human hearts |
Description | The molecular mechanisms of progressive right heart failure are incompletely understood. We systematically examined transcriptomic changes occurring over months in isolated cardiomyocytes or whole heart tissues from failing right and left ventricles in rat models of pulmonary artery (PAB) or aortic banding (AOB). Detailed bioinformatics analyses resulted in the identification of gene signatures, protein, and transcription factor networks specific to ventricles and compensated or decompensated disease states. Proteomic and RNA-FISH analyses confirmed PAB-mediated regulation of key genes (including proenkephalin) and revealed spatially heterogeneous mRNA expression in the heart. Intersection of rat PAB-specific gene sets with transcriptome data sets from human patients with chronic thromboembolic pulmonary hypertension led to the identification of more than 50 genes whose expression levels correlated with the severity of right heart disease, including multiple matrix-regulating and secreted factors. These data define a conserved, differentially regulated genetic network associated with right heart failure in rats and humans |
HostingRepository | PRIDE |
AnnounceDate | 2024-04-11 |
AnnouncementXML | Submission_2024-04-11_11:50:38.069.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | XIAOKE YIN |
SpeciesList | scientific name: Rattus norvegicus (Rat); NCBI TaxID: 10116; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | Orbitrap Fusion Lumos |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2023-11-16 07:02:16 | ID requested | |
⏵ 1 | 2024-04-11 11:50:38 | announced | |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: right heart failure, human CTEPH, gene signature, AOB, PAB |
Contact List
Prof Manuel Mayr |
contact affiliation | National Heart and Lung Institute, Faculty of Medicine, Imperial College London, UK |
contact email | m.mayr@imperial.ac.uk |
lab head | |
XIAOKE YIN |
contact affiliation | National Heart and Lung Institute, Faculty of Medicine, Imperial College London |
contact email | xiaoke.yin@imperial.ac.uk |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD047022
- Label: PRIDE project
- Name: A common gene signature of the right ventricle in failing rat and human hearts