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PXD047022

PXD047022 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleA common gene signature of the right ventricle in failing rat and human hearts
DescriptionThe molecular mechanisms of progressive right heart failure are incompletely understood. We systematically examined transcriptomic changes occurring over months in isolated cardiomyocytes or whole heart tissues from failing right and left ventricles in rat models of pulmonary artery (PAB) or aortic banding (AOB). Detailed bioinformatics analyses resulted in the identification of gene signatures, protein, and transcription factor networks specific to ventricles and compensated or decompensated disease states. Proteomic and RNA-FISH analyses confirmed PAB-mediated regulation of key genes (including proenkephalin) and revealed spatially heterogeneous mRNA expression in the heart. Intersection of rat PAB-specific gene sets with transcriptome data sets from human patients with chronic thromboembolic pulmonary hypertension led to the identification of more than 50 genes whose expression levels correlated with the severity of right heart disease, including multiple matrix-regulating and secreted factors. These data define a conserved, differentially regulated genetic network associated with right heart failure in rats and humans
HostingRepositoryPRIDE
AnnounceDate2024-04-11
AnnouncementXMLSubmission_2024-04-11_11:50:38.069.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterXIAOKE YIN
SpeciesList scientific name: Rattus norvegicus (Rat); NCBI TaxID: 10116;
ModificationListmonohydroxylated residue; iodoacetamide derivatized residue
InstrumentOrbitrap Fusion Lumos
Dataset History
RevisionDatetimeStatusChangeLog Entry
02023-11-16 07:02:16ID requested
12024-04-11 11:50:38announced
Publication List
Dataset with its publication pending
Keyword List
submitter keyword: right heart failure, human CTEPH, gene signature, AOB, PAB
Contact List
Prof Manuel Mayr
contact affiliationNational Heart and Lung Institute, Faculty of Medicine, Imperial College London, UK
contact emailm.mayr@imperial.ac.uk
lab head
XIAOKE YIN
contact affiliationNational Heart and Lung Institute, Faculty of Medicine, Imperial College London
contact emailxiaoke.yin@imperial.ac.uk
dataset submitter
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Dataset FTP location
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