PXD004290

PXD004290 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Comparing the diagnostic classification accuracy of iTRAQ, peak-area, spectral-counting and emPAI methods for relative quantification in expression proteomics
Description	We present a comparison of the diagnostic accuracy of iTRAQ with three label free methods (peak-area, spectral-counting, and emPAI) for relative quantification using a spiked proteome standard.
HostingRepository	MassIVE
AnnounceDate	2016-08-30
AnnouncementXML	Submission_2016-08-30_01:13:06.xml
DigitalObjectIdentifier
ReviewLevel	Non peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Adam Dowle
SpeciesList	scientific name: Escherichia coli; NCBI TaxID: 562; scientific name: Bos taurus; common name: cattle; NCBI TaxID: 9913; scientific name: Gallus gallus; common name: chicken; NCBI TaxID: 9031; scientific name: Equus caballus; common name: horse; NCBI TaxID: 9796; scientific name: Saccharomyces cerevisiae; common name: baker's yeast; NCBI TaxID: 4932; scientific name: Oryctolagus cuniculus; common name: rabbit; NCBI TaxID: 9986;
ModificationList	Methylthio; Deamidated; Glu->pyro-Glu; Gln->pyro-Glu; Phospho; iTRAQ8plex
Instrument	maXis

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2016-06-08 05:46:57	ID requested
⏵ 1	2016-08-30 01:13:06	announced

Publication List

Dataset with its publication pending

Dataset with its publication pending

Keyword List

submitter keyword: iTRAQ, Label free, Peak area, Spectral counting, emPAI, Relative quantification, Expression proteomics

submitter keyword: iTRAQ, Label free, Peak area, Spectral counting, emPAI, Relative quantification, Expression proteomics

Contact List

Adam A. Dowle
lab head
Adam Dowle
contact affiliation	University of York
contact email	adam.dowle@york.ac.uk
dataset submitter

Full Dataset Link List

MassIVE dataset URI
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000079803

MassIVE dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000079803