⮝ Full datasets listing
PXD070670
PXD070670 is an original dataset announced via ProteomeXchange.
Dataset Summary
| Title | Microbial Co-Culture Circadian Control Proteomics |
| Description | Mono and co-cultured (dense OD) S. elongatus and R. toruloides with light vs dark treatment. TMT16 fractions for redox and global proteomics. Samples were processed using the SP3-based multi-PTM workflow (Gluth et al, 2024, MCP). Data was searched with MS-GF+ using PNNL's DMS Processing pipeline. PlexedPiper was used to link peptide identifications with MASIC quantification data. Normalization was performed using the global median method, and redox data were further normalized to the corresponding global dataset. |
| HostingRepository | MassIVE |
| AnnounceDate | 2025-11-20 |
| AnnouncementXML | Submission_2025-11-20_16:45:29.038.xml |
| DigitalObjectIdentifier | |
| ReviewLevel | Non peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Supported dataset by repository |
| PrimarySubmitter | Matthew Monroe |
| SpeciesList | scientific name: Synechococcus elongatus PCC 7942; NCBI TaxID: 1140; scientific name: Rhodotorula toruloides; NCBI TaxID: 5286; |
| ModificationList | Oxidation; Carbamidomethyl; Nethylmaleimide; TMTpro |
| Instrument | Q Exactive Plus |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|---|---|---|
| 0 | 2025-11-12 19:44:04 | ID requested | |
| ⏵ 1 | 2025-11-20 16:45:29 | announced |
Publication List
| no publication |
Keyword List
| submitter keyword: S. elongatus, R. toruloides, TMT16, DatasetType:Proteomics |
Contact List
| Wei-Jun Qian | |
|---|---|
| contact affiliation | Pacific Northwest National Laboratory |
| contact email | Weijun.Qian@pnnl.gov |
| lab head | |
| Matthew Monroe | |
| contact affiliation | Pacific Northwest National Laboratory |
| contact email | matthew.monroe@pnnl.gov |
| dataset submitter | |
Full Dataset Link List
| MassIVE dataset URI |
| Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive-ftp.ucsd.edu/v11/MSV000099883/ |
