PXD039519 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | RNA quality control factors nucleate Clr4/SUV39H and trigger constitutive heterochromatin assembly |
Description | In eukaryotes, the Suv39 family of proteins tri-methylate lysine 9 of histone H3 (H3K9me) to form constitutive heterochromatin. However, how Suv39 proteins are nucleated at heterochromatin is not fully described. In the fission yeast, current models posit that Argonaute1-associated small RNAs (sRNAs) nucleate the sole H3K9 methyltransferase, Clr4/SUV39H, to centromeres. Here, we show that in the absence of all sRNAs and H3K9me, the Mtl1 and Red1 core (MTREC)/PAXT complex nucleates Clr4/SUV39H at a heterochromatic long noncoding RNA (lncRNA) at which the two H3K9 deacetylases, Sir2 and Clr3, also accumulate by distinct mechanisms. Iterative cycles of H3K9 deacetylation and methylation spread Clr4/SUV39H from the nucleation center in an sRNA-independent manner, generating a basal H3K9me state. This is acted upon by the RNAi machinery to augment and amplify the Clr4/H3K9me signal at centromeres to establish heterochromatin. Overall, our data reveal that lncRNAs and RNA quality control factors can nucleate heterochromatin and function as epigenetic silencers in eukaryotes. |
HostingRepository | PRIDE |
AnnounceDate | 2024-10-22 |
AnnouncementXML | Submission_2024-10-22_06:39:33.241.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Joao Paulo |
SpeciesList | scientific name: Schizosaccharomyces pombe OY26; NCBI TaxID: 649908; |
ModificationList | monohydroxylated residue |
Instrument | Orbitrap Exploris 480; Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2023-01-17 01:29:51 | ID requested | |
1 | 2024-05-16 13:35:29 | announced | |
⏵ 2 | 2024-10-22 06:39:33 | announced | 2024-10-22: Updated project metadata. |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: MTREC/NURS, long noncoding RNAs (lncRNA), H3K9 deacetylation, Clr3, H3K9 methylation, Clr4/SUV39H, heterochromatin nucleation, Sir2,De novo heterochromatin formation, nuclear exosome |
Contact List
Mo Motamedi |
contact affiliation | Massachusetts General Hospital Center for Cancer Research and Department of Medicine Harvard Medical School Charlestown, MA, 02129, USA |
contact email | mo_motamedi@hms.harvard.edu |
lab head | |
Joao Paulo |
contact affiliation | Harvard Medical School |
contact email | joao_paulo@post.harvard.edu |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD039519
- Label: PRIDE project
- Name: RNA quality control factors nucleate Clr4/SUV39H and trigger constitutive heterochromatin assembly