PXD028583 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Frequency of change determines effectiveness of microbial response strategies in sulfidic stream microbiomes |
Description | Chemostat incubations were established and inoculated with sediments collected from Canyon Creek, Calgary, Alberta, Canada. The chemostats experienced oxic-anoxic change of different frequency, High-frequency, Medium-frequency and Low-frequency. 18 samples were collected at the end of the final oxic phase and the final anoxic phase in the triplicated chemostats for metagenomic and metaproteomic analysis. 26 genomes were assembled from metagenomes. Proteomes were used to investigate translational regulation of each population associated with a genome. |
HostingRepository | PRIDE |
AnnounceDate | 2023-04-26 |
AnnouncementXML | Submission_2023-04-26_12:58:54.440.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | AngelaKouris |
SpeciesList | scientific name: Acidovorax; NCBI TaxID: 12916; scientific name: Arenimonas sp.; NCBI TaxID: 1872635; |
ModificationList | phosphorylated residue; acetylated residue; monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2021-09-16 09:00:05 | ID requested | |
⏵ 1 | 2023-04-26 12:58:54 | announced | |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: chemostat incubation, metagenome-assembled-genomes,Metaproteomics, metaproteome |
Contact List
MarcStrous |
contact affiliation | University of Calgary |
contact email | mstrous@ucalgary.ca |
lab head | |
AngelaKouris |
contact affiliation | University of Calgary |
contact email | angela.kouris@ucalgary.ca |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD028583
- Label: PRIDE project
- Name: Frequency of change determines effectiveness of microbial response strategies in sulfidic stream microbiomes