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PXD028583

PXD028583 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleFrequency of change determines effectiveness of microbial response strategies in sulfidic stream microbiomes
DescriptionChemostat incubations were established and inoculated with sediments collected from Canyon Creek, Calgary, Alberta, Canada. The chemostats experienced oxic-anoxic change of different frequency, High-frequency, Medium-frequency and Low-frequency. 18 samples were collected at the end of the final oxic phase and the final anoxic phase in the triplicated chemostats for metagenomic and metaproteomic analysis. 26 genomes were assembled from metagenomes. Proteomes were used to investigate translational regulation of each population associated with a genome.
HostingRepositoryPRIDE
AnnounceDate2023-04-26
AnnouncementXMLSubmission_2023-04-26_12:58:54.440.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterAngelaKouris
SpeciesList scientific name: Acidovorax; NCBI TaxID: 12916; scientific name: Arenimonas sp.; NCBI TaxID: 1872635;
ModificationListphosphorylated residue; acetylated residue; monohydroxylated residue; iodoacetamide derivatized residue
InstrumentQ Exactive
Dataset History
RevisionDatetimeStatusChangeLog Entry
02021-09-16 09:00:05ID requested
12023-04-26 12:58:54announced
Publication List
Dataset with its publication pending
Keyword List
submitter keyword: chemostat incubation, metagenome-assembled-genomes,Metaproteomics, metaproteome
Contact List
MarcStrous
contact affiliationUniversity of Calgary
contact emailmstrous@ucalgary.ca
lab head
AngelaKouris
contact affiliationUniversity of Calgary
contact emailangela.kouris@ucalgary.ca
dataset submitter
Full Dataset Link List
Dataset FTP location
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PRIDE project URI
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