PXD048469

PXD048469 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Uncovering missing glycans and unexpected fragments with pGlycoNovo: a full-range Y-ion dynamic searching strategy for site-specific glycosylation analysis across species
Description	Precision mapping of glycans at the site-specific level using mass spectrometry data has emerged as a crucial approach for glycan discovery in modern glycoproteomics and glycobiology. However, the extensive diversity of glycan compositions within and across species far surpasses the capacity of existing software databases. Consequently, the identification of glycans not included in the database or lacking prior compositional knowledge during large-scale glycoproteomic analyses poses a significant challenge. Here, we present pGlycoNovo, a software platform for analyzing intact glycopeptides featuring rare glycan attachments within the pGlyco3 software environment.
HostingRepository	MassIVE
AnnounceDate	2024-08-23
AnnouncementXML	Submission_2024-08-23_08:51:15.327.xml
DigitalObjectIdentifier
ReviewLevel	Non peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Mingqiliu
SpeciesList	scientific name: Mus musculus; common name: house mouse; NCBI TaxID: 10090; scientific name: Arabidopsis thaliana; common name: thale cress; NCBI TaxID: 3702; scientific name: Caenorhabditis elegans; common name: roundworm; NCBI TaxID: 6239; scientific name: Drosophila ; common name: fruit flies; NCBI TaxID: 7215; scientific name: Danio rerio; common name: zebrafish; NCBI TaxID: 7955;
ModificationList	N-acetylaminoglucosylated
Instrument	Orbitrap Fusion

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2024-01-11 11:20:47	ID requested
⏵ 1	2024-08-23 08:51:15	announced

Publication List

no publication

no publication

Keyword List

submitter keyword: pGlyco, Glycosylation, De novo

submitter keyword: pGlyco, Glycosylation, De novo

Contact List

Weiqian Cao
contact affiliation	Institutes of Biomedical Sciences,Fudan University
contact email	wqcao@fudan.edu.cn
lab head
Mingqiliu
contact affiliation	Fudan University
contact email	mingqiliu10@icloud.com
dataset submitter

Full Dataset Link List

MassIVE dataset URI
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/v06/MSV000093838/

MassIVE dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/v06/MSV000093838/