⮝ Full datasets listing
PXD065564
PXD065564 is an original dataset announced via ProteomeXchange.
Dataset Summary
| Title | Mono-mix strategy enables proteomic analysis of a cross-kingdom microbial symbiosis |
| Description | The interaction between Chlamydomonas reinhardtii and Mesorhizobium japonicum were investigated in cocultures, monocultures, and mono-mixes by label-free LC-MS/MS proteomics with and without sample fractionation. Sample fractionation and comparison to mono-mix controls revealed meaningful symbiosis-dependent changes in the bacterial proteome. Samples were digested with trypsin then analyzed by LC-MS/MS. Data was searched with MS-GF+ using PNNL's DMS Processing pipeline. |
| HostingRepository | MassIVE |
| AnnounceDate | 2025-12-22 |
| AnnouncementXML | Submission_2025-12-22_12:32:54.535.xml |
| DigitalObjectIdentifier | |
| ReviewLevel | Non peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Supported dataset by repository |
| PrimarySubmitter | Matthew Monroe |
| SpeciesList | scientific name: Chlamydomonas reinhardtii; NCBI TaxID: 3055; scientific name: Mesorhizobium japonicum; NCBI TaxID: 2066070; |
| ModificationList | Oxidation |
| Instrument | Orbitrap Eclipse; Orbitrap Fusion Lumos |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|---|---|---|
| 0 | 2025-06-27 07:57:21 | ID requested | |
| ⏵ 1 | 2025-12-22 12:32:55 | announced |
Publication List
| no publication |
Keyword List
| submitter keyword: chlorophyte, dual-proteomics, mixed cultures, photosynthetic microbe, aquatic, rhizobia, DatasetType:Proteomics |
Contact List
| Sabeeha Merchant | |
|---|---|
| contact affiliation | University of California Berkeley |
| contact email | sabeeha@berkeley.edu |
| lab head | |
| Matthew Monroe | |
| contact affiliation | Pacific Northwest National Laboratory |
| contact email | matthew.monroe@pnnl.gov |
| dataset submitter | |
Full Dataset Link List
| MassIVE dataset URI |
| Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive-ftp.ucsd.edu/v10/MSV000098360/ |
