PXD044263 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Comparative proteomic identification of Rab GTPase interactors in Arabidopsis |
Description | Rab GTPases are key spatio-temporal regulators of endomembrane trafficking and endomembrane compartment identity across eukaryotes. This therefore makes them ideal targets for study of endomembrane compartment and trafficking pathway composition. In plants, few definitive interactors of Rab GTPases and cargoes of their associated trafficking pathways are known, hindering our understanding of how plants may accomplish and support some unique aspects and requirements of their post-Golgi trafficking systems. The purpose of this work was to identify candidate interactors of different post-Golgi Rab GTPases in Arabidopsis. Co-IPs were performed against tagged-versions of three different post-Golgi Rab GTPases: RAB-A5c, RAB-A2a and RAB-G3f, as well as against control wild-type (Col-0) plants. Comparative ranking of the different proteomes produced candidate interactor lists enriched in possible specific interactors of each Rab GTPase, as well as generic shared interactors. This dataset forms the basis of the characterisation work of several upcoming publications. |
HostingRepository | PRIDE |
AnnounceDate | 2023-11-14 |
AnnouncementXML | Submission_2023-11-14_07:16:27.280.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Liam Elliott |
SpeciesList | scientific name: Arabidopsis thaliana (Mouse-ear cress); NCBI TaxID: 3702; |
ModificationList | iodoacetamide derivatized residue |
Instrument | Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2023-08-01 06:34:07 | ID requested | |
1 | 2023-09-21 09:01:42 | announced | |
⏵ 2 | 2023-11-14 07:16:27 | announced | 2023-11-14: Updated project metadata. |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: Arabidopsis, Rab GTPase |
Contact List
Charlotte Kirchhelle |
contact affiliation | Laboratoire Reproduction et DÉveloppement des Plantes, ENS de Lyon |
contact email | charlotte.kirchhelle@ens-lyon.fr |
lab head | |
Liam Elliott |
contact affiliation | RDP lab, ENS de Lyon |
contact email | liam.elliott@ens-lyon.fr |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/09/PXD044263 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD044263
- Label: PRIDE project
- Name: Comparative proteomic identification of Rab GTPase interactors in Arabidopsis