PXD025652 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Evaluation of fully functionalized diazirine tags for chemical proteomic applications |
Description | The use of photo-affinity labeling (PAL) reagents for the mapping of noncovalent small molecule-protein interactions has become widespread. Recently, several ‘fully-functionalized’ (FF) chemical tags have been developed wherein a photoactivatable capture group, an enrichment handle, and a functional group for synthetic conjugation to a molecule of interest are integrated into a single modular tag. Diazirine-based FF tags in particular are increasingly employed in chemical proteomic investigations, however, despite routine usage, their relative utility has not been established. Here, we systematically evaluate several diazirine-containing FF tags, including a terminal diazirine analog developed herein, for chemical proteomic investigations. Specifically, we compared the general reactivity of five diazirine tags and assessed their impact on the profiles of various small molecules, including fragments and known inhibitors revealing that such tags can have profound effects on the proteomic profiles of chemical probes. Our findings should be informative for chemical probe design, PAL-reagent development, and chemical proteomic investigations. |
HostingRepository | PRIDE |
AnnounceDate | 2021-05-11 |
AnnouncementXML | Submission_2021-05-10_22:16:54.592.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Louis Conway |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | No PTMs are included in the dataset |
Instrument | Orbitrap Fusion Lumos |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2021-04-27 08:18:33 | ID requested | |
⏵ 1 | 2021-05-10 22:16:54 | announced | |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: photoaffinity, fully-functionlalized, diazirine |
Contact List
Christopher G Parker |
contact affiliation | Department of Chemistry The Scripps Research Institute Jupiter FL, USA |
contact email | cparker@scripps.edu |
lab head | |
Louis Conway |
contact affiliation | Scripps Research |
contact email | lconway@scripps.edu |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/05/PXD025652 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD025652
- Label: PRIDE project
- Name: Evaluation of fully functionalized diazirine tags for chemical proteomic applications