PXD023209 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Comprehensive analysis of the host-virus interactome of SARS-CoV-2 |
Description | Host-virus protein-protein interaction is the key component of SARS-CoV-2 life cycle, which can be targeted for therapeutic intervention. Thus, we conducted a comprehensive interactome study between the virus and host cell using tandem affinity purification (TAP) and BioID2 labeling strategies. In addition, we compared the interactomes of two key SARS-CoV-2 encoded viral proteins, NSP1 and N protein, to the interactomes of their counterparts in other human coronaviruses. |
HostingRepository | PRIDE |
AnnounceDate | 2021-06-29 |
AnnouncementXML | Submission_2021-06-29_08:25:47.451.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Zhen Chen |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | No PTMs are included in the dataset |
Instrument | Q Exactive HF |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2020-12-18 01:47:56 | ID requested | |
⏵ 1 | 2021-06-29 08:25:47 | announced | |
Publication List
Dataset with its publication pending |
Keyword List
ProteomeXchange project tag: Covid-19 |
submitter keyword: SARS-CoV-2, interactome, host-virus protein-protein interaction, human coronavirus, SFB-TAP, BioID2 |
Contact List
Junjie Chen |
contact affiliation | Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA |
contact email | jchen8@mdanderson.org |
lab head | |
Zhen Chen |
contact affiliation | The University of Texas MD Anderson Cancer Center |
contact email | zchen6@mdanderson.org |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/06/PXD023209 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD023209
- Label: PRIDE project
- Name: Comprehensive analysis of the host-virus interactome of SARS-CoV-2