PXD016079

PXD016079 is an original dataset announced via ProteomeXchange.

Title	Comparative Differential Cuproproteomes of Rhodobacter capsulatus
Description	In this study, we achieved a global view of Cu-responsive changes in the prokaryotic model organism Rhodobacter capsulatus using label-free quantitative differential proteomics. Semi-aerobically grown cells under heterotrophic conditions in minimal medium (~ 0.3 M Cu, optimal for growth) were compared with cells grown similarly but supplemented with either 5 M Cu or with 5 mM of the Cu-chelator bathocuproine sulfonate. Mass spectrometry based bottom-up proteome analyses of unfractionated cell lysates identified with high confidence 2430 of the 3632 putative proteins encoded by the genome.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_05:07:54.552.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Nur Selamoglu
SpeciesList	scientific name: Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003); NCBI TaxID: 272942;
ModificationList	iodoacetamide derivatized residue
Instrument	LTQ Orbitrap Velos; Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2019-10-30 02:54:32	ID requested
1	2020-06-27 16:47:40	announced
⏵ 2	2024-10-22 05:07:54	announced	2024-10-22: Updated project metadata.

Dataset with its publication pending

submitter keyword: LC-MS/MS, Rhodobacter capsulatus, LFQ (Label Free Quantification)

Fevzi Daldal
contact affiliation	University of Pennsylvania, Department of Biology
contact email	fdaldal@sas.upenn.edu
lab head
Nur Selamoglu
contact affiliation	University of Pennsylvania
contact email	nursela@sas.upenn.edu
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/06/PXD016079

PRIDE project URI

• PRIDE
  1. PXD016079
     1. Label: PRIDE project
     2. Name: Comparative Differential Cuproproteomes of Rhodobacter capsulatus