PXD004648

PXD004648 is an original dataset announced via ProteomeXchange.

Title	ER-RIME in wt-MCF7 and MCF7-LTED
Description	Wild type (wt) MCF7 cells, modelling breast cancer at primary diagnosis, were cultured in phenol red-free RPMI supplemented with 10% FBS and 1nM estradiol (E2). Long-term oestrogen deprived (LTED) cell lines, which model resistance to endocrine therapy, were cultured in phenol red-free RPMI in the absence of exogenous E2 and supplemented with 10% dextran charcoal-stripped bovine serum (DCC). Samples were harvested at baseline and at the point of resistance (LTED). In order to do comparative analysis in the ER-interactome of wt-MCF7 and MCF7-LTED cells, ER-RIME (rapid immunoprecipitation mass spectrometry of endogenous proteins) was conducted in these cells.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_05:08:49.571.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Nikiana Simigdala
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	LTQ Orbitrap Velos

Revision	Datetime	Status	ChangeLog Entry
0	2016-07-25 02:09:05	ID requested
1	2020-07-13 03:47:29	announced
⏵ 2	2024-10-22 05:08:49	announced	2024-10-22: Updated project metadata.

Dataset with its publication pending

curator keyword: Biomedical

submitter keyword: breast cancer, MCF7,RIME, LC-MS/MS

Lesley-Ann Martin
contact affiliation	Breast Cancer Now The Institute of Cancer Research
contact email	Lesley-Ann.Martin@icr.ac.uk
lab head
Nikiana Simigdala
contact affiliation	BRFAA
contact email	Nikiana.Simigdala@icr.ac.uk
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/07/PXD004648

PRIDE project URI

• PRIDE
  1. PXD004648
     1. Label: PRIDE project
     2. Name: ER-RIME in wt-MCF7 and MCF7-LTED