PXD005159-5

PXD005159 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	HeLa standard shotgun DDA analysis using a two-meter C18 monolithic silica column
Description	Human HeLa proteome analysis by a nanoLC-MS/MS system using a two-meter C18 monolithic silica column under shallow gradient conditions without pre-fractionation was performed in this project. A hybrid quadrupole-orbitrap mass spectrometer (Thermo Q-Exactive) was used to analyze a tryptic digest of HeLa cells through this study. Identification results were filtered at 1% false discovery rate (FDR) thresholds by searching against a randomized decoy database using Mascot at peptide and protein levels.
HostingRepository	jPOST
AnnounceDate	2016-10-17
AnnouncementXML	Submission_2018-09-18_23:39:53.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD005159
ReviewLevel	Non peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Saki Nambu
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	S-carboxymethyl-L-cysteine; L-methionine sulfoxide
Instrument	Q Exactive

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2016-10-16 11:00:49	ID requested
1	2016-10-16 19:22:57	announced
2	2016-11-17 18:12:39	announced	Updated description.
3	2017-03-30 23:33:44	announced	Updated Repository support.
4	2017-03-31 00:09:03	announced	Updated DigitalObjectIdentifier.
⏵ 5	2018-09-18 23:39:54	announced	Updated CV, FTP location and Modification list.
6	2021-02-04 17:07:11	announced	2021-02-04: Updated FTP location.
7	2022-09-18 02:58:30	announced	2022-09-18: Updated FTP location.

Publication List

Dataset with its publication pending

Dataset with its publication pending

Keyword List

submitter keyword: Monolithic silica column, HeLa cell

submitter keyword: Monolithic silica column, HeLa cell

Contact List

Yasushi Ishihama
lab head
Saki Nambu
contact affiliation	Kyoto university
dataset submitter

Full Dataset Link List

jPOST dataset URI
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://jpost.pharm.kyoto-u.ac.jp/repository/JPST000200

jPOST dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://jpost.pharm.kyoto-u.ac.jp/repository/JPST000200