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PXD005159-4

PXD005159 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	HeLa standard shotgun DDA analysis using a two-meter C18 monolithic silica column
Description	Human HeLa proteome analysis by a nanoLC-MS/MS system using a two-meter C18 monolithic silica column under shallow gradient conditions without pre-fractionation was performed in this project. A hybrid quadrupole-orbitrap mass spectrometer (Thermo Q-Exactive) was used to analyze a tryptic digest of HeLa cells through this study. Identification results were filtered at 1% false discovery rate (FDR) thresholds by searching against a randomized decoy database using Mascot at peptide and protein levels.
HostingRepository	jPOST
AnnounceDate	2016-10-17
AnnouncementXML	Submission_2017-03-31_00:09:02.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD005159
ReviewLevel	Non peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Saki Nambu
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	iodoacetic acid derivatized residue; (2S,3R)-3-hydroxyaspartic acid; iodoacetamide derivatized residue
Instrument	Q Exactive

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2016-10-16 11:00:49	ID requested
1	2016-10-16 19:22:57	announced
2	2016-11-17 18:12:39	announced	Updated description.
3	2017-03-30 23:33:44	announced	Updated Repository support.
⏵ 4	2017-03-31 00:09:03	announced	Updated DigitalObjectIdentifier.
5	2018-09-18 23:39:54	announced	Updated CV, FTP location and Modification list.
6	2021-02-04 17:07:11	announced	2021-02-04: Updated FTP location.
7	2022-09-18 02:58:30	announced	2022-09-18: Updated FTP location.

Publication List

Dataset with its publication pending

Keyword List

submitter keyword: Monolithic silica column, HeLa cell

Contact List

Yasushi Ishihama
lab head
Saki Nambu
contact affiliation	Kyoto university
dataset submitter

Full Dataset Link List

jPOST dataset URI