<<< Full experiment listing

PXD001010-4

PXD001010 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleSWATH Analysis of Yeast Proteome over Time in Response to Osmotic Stress
DescriptionSWATH analysis of Yeast Proteome over time in response to Osmotic Stress. We sampled cell cultures in biological triplicates at six time points following the application of osmotic stress and acquired single injection DIA datasets on a high-resolution 5600 tripleTOF instrument operated in SWATH mode. Proteins were quantified by the targeted extraction and signal integration from the SWATH-MS datasets of peak groups representing proteotypic peptides for specific yeast proteins.
HostingRepositoryPRIDE
AnnounceDate2017-10-24
AnnouncementXMLSubmission_2017-10-24_00:14:17.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterLucia Espona Pernas
SpeciesList scientific name: Saccharomyces cerevisiae (Baker's yeast); NCBI TaxID: 4932;
ModificationListmethionine oxidation with neutral loss of 64 Da; S-carboxamidomethyl-L-cysteine
InstrumentTripleTOF 5600; TSQ Quantum
Dataset History
RevisionDatetimeStatusChangeLog Entry
02014-05-27 05:26:12ID requested
12015-01-22 03:23:46announced
22015-01-23 00:31:10announcedUpdated project metadata.
32017-06-20 05:42:44announcedUpdated project metadata.
42017-10-24 00:14:19announcedUpdated project metadata.
Publication List
Selevsek N, Chang CY, Gillet LC, Navarro P, Bernhardt OM, Reiter L, Cheng LY, Vitek O, Aebersold R, Reproducible and consistent quantification of the Saccharomyces cerevisiae proteome by SWATH-mass spectrometry. Mol Cell Proteomics, 14(3):739-49(2015) [pubmed]
Keyword List
curator keyword: Technical
submitter keyword: yeast, SWATH-MS, 5600, osmotic stress
Contact List
Ruedi Aebersold
contact affiliationInstitute of Molecular Systems Biology, ETH Zurich
contact emailaebersold@imsb.biol.ethz.ch
lab head
Lucia Espona Pernas
contact affiliationInstitute of Molecular Systems Biology
contact emailespona@imsb.biol.ethz.ch
dataset submitter
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/01/PXD001010
PRIDE project URI
Repository Record List
[ + ]