PXD051890 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | K48- and K63-linked ubiquitin chain interactome reveals branch- and length-specific ubiquitin interactors |
Description | Ubiquitin-interactor co-pulldown coupled with mass spectrometry used to elucidate K48- and K63-linked interactomes including those of Ub chains of varying length (Ub-Ub3) and heterotypic branched Ub chains. Ubiquitin-interactors were enriched from human HeLa and yeast s. cerevisiae cell lysate with either chloroacetamide (CAA) or N-ethylmaleimide (NEM) as DUB inhibitors. |
HostingRepository | PRIDE |
AnnounceDate | 2024-05-15 |
AnnouncementXML | Submission_2024-05-15_06:28:08.673.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Oliver Popp |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; scientific name: Saccharomyces cerevisiae (Baker's yeast); NCBI TaxID: 4932; |
ModificationList | No PTMs are included in the dataset |
Instrument | Orbitrap Exploris 480 |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2024-04-30 05:11:55 | ID requested | |
⏵ 1 | 2024-05-15 06:28:09 | announced | |
2 | 2024-05-20 08:18:52 | announced | 2024-05-20: Updated project metadata. |
Publication List
Keyword List
submitter keyword: Branched Ubiquitin Chains / Interactor / Protein-protein interaction / Proteomics / Proteostasis / Ubiquitin |
Contact List
Thomas Sommer |
contact affiliation | Max-Delbrück-Center for Molecular Medicine (MDC) in the Helmholtz Association |
contact email | tsommer@mdc-berlin.de |
lab head | |
Oliver Popp |
contact affiliation | MDC Berlin |
contact email | oliver.popp@mdc-berlin.de |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/05/PXD051890 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD051890
- Label: PRIDE project
- Name: K48- and K63-linked ubiquitin chain interactome reveals branch- and length-specific ubiquitin interactors