PXD047785-2

PXD047785 is an original dataset announced via ProteomeXchange.

Title	Human milk oligosaccharide degradation by a defined consortium of the infant gut microbiota.
Description	With this study, we wanted to investigate degradation of human milk oligosaccharides and the subsequent cross-feeding interactions of a complex bacterial community that resembles the gut microbiota of pre-weaned vaginally-born breastfed infants.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_06:56:43.306.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Sjef Boeren
SpeciesList	scientific name: Phocaeicola vulgatus ATCC 8482; NCBI TaxID: 435590; scientific name: Ruminococcus gnavus ATCC 29149; NCBI TaxID: 411470; scientific name: Enterococcus faecalis ATCC 19433; NCBI TaxID: 1169286; scientific name: Escherichia coli str. K-12 substr. MG1655; NCBI TaxID: 511145; scientific name: Lactobacillus rhamnosus GG; NCBI TaxID: 568703; scientific name: Bifidobacterium bifidum JCM 1254; NCBI TaxID: 398514; scientific name: Streptococcus salivarius; NCBI TaxID: 1304; scientific name: Blautia producta ATCC 27340 = DSM 2950; NCBI TaxID: 1121114; scientific name: Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12); NCBI TaxID: 391904; scientific name: Bacteroides ovatus ATCC 8483; NCBI TaxID: 411476; scientific name: Bifidobacterium breve DSM 20213 = JCM 1192; NCBI TaxID: 518634; scientific name: Veillonella parvula DSM 2008; NCBI TaxID: 479436; scientific name: Bacteroides fragilis (strain ATCC 25285 / NCTC 9343); NCBI TaxID: 272559;
ModificationList	S-carboxamidoethyl-L-cysteine; acetylated residue; monohydroxylated residue; deamidated residue
Instrument	Orbitrap Exploris 480

Revision	Datetime	Status	ChangeLog Entry
0	2023-12-13 02:03:44	ID requested
1	2024-08-27 06:55:55	announced
⏵ 2	2024-10-22 06:56:43	announced	2024-10-22: Updated project metadata.

Dataset with its publication pending

submitter keyword: Synthetic community, infant gut microbiota, Human Milk Oligosaccharides, early life

Sjef Boeren
contact affiliation	Wageningen University
contact email	sjef.boeren@wur.nl
lab head
Sjef Boeren
contact affiliation	Biochemistry
contact email	sjef.boeren@wur.nl
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/08/PXD047785

PRIDE project URI

• PRIDE
  1. PXD047785
     1. Label: PRIDE project
     2. Name: Human milk oligosaccharide degradation by a defined consortium of the infant gut microbiota.