PXD047785 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Human milk oligosaccharide degradation by a defined consortium of the infant gut microbiota. |
Description | With this study, we wanted to investigate degradation of human milk oligosaccharides and the subsequent cross-feeding interactions of a complex bacterial community that resembles the gut microbiota of pre-weaned vaginally-born breastfed infants. |
HostingRepository | PRIDE |
AnnounceDate | 2024-08-27 |
AnnouncementXML | Submission_2024-08-27_06:55:55.530.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Sjef Boeren |
SpeciesList | scientific name: Phocaeicola vulgatus ATCC 8482; NCBI TaxID: 435590; scientific name: Ruminococcus gnavus ATCC 29149; NCBI TaxID: 411470; scientific name: Enterococcus faecalis ATCC 19433; NCBI TaxID: 1169286; scientific name: Escherichia coli str. K-12 substr. MG1655; NCBI TaxID: 511145; scientific name: Lactobacillus rhamnosus GG; NCBI TaxID: 568703; scientific name: Bifidobacterium bifidum JCM 1254; NCBI TaxID: 398514; scientific name: Streptococcus salivarius; NCBI TaxID: 1304; scientific name: Blautia producta ATCC 27340 = DSM 2950; NCBI TaxID: 1121114; scientific name: Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12); NCBI TaxID: 391904; scientific name: Bacteroides ovatus ATCC 8483; NCBI TaxID: 411476; scientific name: Bifidobacterium breve DSM 20213 = JCM 1192; NCBI TaxID: 518634; scientific name: Veillonella parvula DSM 2008; NCBI TaxID: 479436; scientific name: Bacteroides fragilis (strain ATCC 25285 / NCTC 9343); NCBI TaxID: 272559; |
ModificationList | S-carboxamidoethyl-L-cysteine; acetylated residue; monohydroxylated residue; deamidated residue |
Instrument | Orbitrap Exploris 480 |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2023-12-13 02:03:44 | ID requested | |
⏵ 1 | 2024-08-27 06:55:55 | announced | |
2 | 2024-10-22 06:56:43 | announced | 2024-10-22: Updated project metadata. |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: Synthetic community, infant gut microbiota, Human Milk Oligosaccharides, early life |
Contact List
Sjef Boeren |
contact affiliation | Wageningen University |
contact email | sjef.boeren@wur.nl |
lab head | |
Sjef Boeren |
contact affiliation | Biochemistry |
contact email | sjef.boeren@wur.nl |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/08/PXD047785 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD047785
- Label: PRIDE project
- Name: Human milk oligosaccharide degradation by a defined consortium of the infant gut microbiota.