PXD047723-1

PXD047723 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Plasma-derived extracellular vesicles from patients with liver cirrhosis and hepatocellular carcinoma
Description	Quantitative label-free proteomic analysis of extracellular vesicles. A pool of isolated proteins from extracellular vesicles (EVs) was performed for each sample group, namely healthy participants (HP), liver cirrhosis (LC), and hepatocellular carcinoma (HCC), split into three biological replicates. Then, samples were digested with trypsin, and the peptides were subjected to Nano LC-MS/MS Analysis and Mass Spectrometry. Nine raw MS files were analyzed and searched against the human protein database based on the species of the samples using Maxquant. The parameters were set as follows: the protein modifications were carbamidomethylation (C) (fixed), oxidation (M) (variable); the enzyme specificity was set to trypsin; the maximum missed cleavage was set to 2; the precursor ion mass tolerance was set to 10 ppm, and MS/MS tolerance was 0.5 Da.
HostingRepository	jPOST
AnnounceDate	2024-07-09
AnnouncementXML	Submission_2024-07-09_12:57:03.010.xml
DigitalObjectIdentifier
ReviewLevel	Non peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Verónica Rocío Vásquez Garzón
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	S-carboxamidomethyl-L-cysteine; L-methionine sulfoxide
Instrument	Q Exactive

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2023-12-11 10:26:38	ID requested
⏵ 1	2024-07-09 12:57:03	announced

Publication List

Dataset with its publication pending

Dataset with its publication pending

Keyword List

submitter keyword: extracelular vesicles, liver cirrhosis, hepatocellular carcinoma

submitter keyword: extracelular vesicles, liver cirrhosis, hepatocellular carcinoma

Contact List

PhD. Verónica Rocío Vásquez-Garzón
lab head
Verónica Rocío Vásquez Garzón
contact affiliation	Facultad de medicina y cirugía, Universidad Autónoma Benito Juárez de Oaxaca
dataset submitter

Full Dataset Link List

jPOST dataset URI
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.jpostdb.org/JPST002412/

jPOST dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.jpostdb.org/JPST002412/