PXD037605 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Proteomics analysis of zebrafish spinal cord regeneration following extracellular matrix manipulations |
Description | Label-free mass spectrometry-based quantitative proteomics was applied to a larval zebrafish spinal cord injury model, which allows axon regeneration and functional recovery within two days (days post lesion; dpl) after a spinal cord transection in 3 day-old larvae (dpf). Proteomic profiling was performed of the lesion site at 1 dpl in control animals and animals with pdgfrb+ cell-specific overexpression of either zebrafish chondoradherin (chad; chad-mCherry fusion), fibromodulin a (fmoda; fmoda-mCherry fusion), lumican (lum; lum-mCherry fusion) or prolargin (prelp; prelp-mCherry fusion). |
HostingRepository | PRIDE |
AnnounceDate | 2023-09-08 |
AnnouncementXML | Submission_2023-09-07_18:50:01.960.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | BarbaraSteigenberger |
SpeciesList | scientific name: Danio rerio (Zebrafish) (Brachydanio rerio); NCBI TaxID: 7955; |
ModificationList | No PTMs are included in the dataset |
Instrument | timsTOF Pro |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2022-10-20 02:27:58 | ID requested | |
⏵ 1 | 2023-09-07 18:50:02 | announced | |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: Zebrafish |
spinal cord |
regeneration |
LC-MS/MS |
Small leucine-rich proteoglycans |
Contact List
Dr. DanielWehner |
contact affiliation | Max Planck Institute for the Science of Light & Max-Planck-Zentrum für Physik und Medizin Division Biological Optomechanics Staudtstr. 2 91058 Erlangen Germany |
contact email | daniel.wehner@mpl.mpg.de |
lab head | |
BarbaraSteigenberger |
contact affiliation | MPI of Biochemistry |
contact email | steigenberger@biochem.mpg.de |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/09/PXD037605 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD037605
- Label: PRIDE project
- Name: Proteomics analysis of zebrafish spinal cord regeneration following extracellular matrix manipulations