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PXD037134-2

PXD037134 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleComprehensive glycoprofiling of oral tumours associates N-glycosylation with lymph node metastasis and patient survival
DescriptionWhile altered protein glycosylation is regarded a trait of oral squamous cell carcinoma (OSCC), its heterogeneous glycoproteome and dynamics with disease progression remain unmapped. Employing an integrated multi-omics approach comprising unbiased and quantitative glycomics and glycoproteomics on resected OSCC tissues, we firstly profiled the N-glycome that overall displayed uniform expression in OSCC patients with (N+, n = 19) and without (N0, n = 12) lymph node metastasis, suggesting relatively stable N-glycosylation during metastasis. Notably, glycoproteomics and advanced correlation analysis uncovered altered site-specific N-glycosylation and associations with clinicopathological features. Importantly, targeted analyses of the multi-omics data unveiled two N-glycans and three N-glycopeptides that were closely associated with patient survival. This study provides novel insight into the complex OSCC tissue N-glycoproteome forming an important resource to further explore the underpinning disease mechanisms and uncover new prognostic glyco-markers for OSCC.
HostingRepositoryPRIDE
AnnounceDate2023-11-14
AnnouncementXMLSubmission_2023-11-14_09:01:10.573.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterAdriana Franco Paes Leme
SpeciesList scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationListmonohydroxylated residue; iodoacetamide derivatized residue
InstrumentQ Exactive HF
Dataset History
RevisionDatetimeStatusChangeLog Entry
02022-10-02 03:58:00ID requested
12023-06-08 12:28:12announced
22023-11-14 09:01:11announced2023-11-14: Updated project metadata.
Publication List
Dataset with its publication pending
Keyword List
submitter keyword: Glycomics, Lymph node metastasis, Glycoproteomics,Glycosylation, Glycoproteome, Oral Cancer
Contact List
Adriana Franco Paes Leme
contact affiliationLaboratório de Espectrometria de Massas, Laboratório Nacional de Biociências (LNBio), Centro Nacional de Pesquisa emEnergia e Materiais (CNPEM) (lab head)
contact emailadriana.paesleme@lnbio.cnpem.br
lab head
Adriana Franco Paes Leme
contact affiliationCNPEM
contact emailadriana.paesleme@lnbio.cnpem.br
dataset submitter
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Dataset FTP location
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