PXD021937 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Rat retinae data for use as spectral library, for pathway remodelling as well as protein mapping |
Description | Spectral libraries generated by data-dependent acquisition (DDA) are a useful tool for the analysis of data created by data-independent acquisition (DIA) in mass spectrometry. The quality of DIA analysis is dependent on the quality of the spectral library. We used retinal rat tissue to create a spectral library of rats retina proteome. This data set may therefore be valuable for the future analysis of retinal proteins and research projects that focus on ocular disorders or function. |
HostingRepository | PRIDE |
AnnounceDate | 2021-06-09 |
AnnouncementXML | Submission_2021-06-08_23:37:49.719.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Annika Guntermann |
SpeciesList | scientific name: Rattus norvegicus (Rat); NCBI TaxID: 10116; |
ModificationList | monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue |
Instrument | Q Exactive HF |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2020-10-13 01:20:38 | ID requested | |
1 | 2021-06-08 07:47:00 | announced | |
2 | 2021-06-08 23:35:45 | announced | 2021-06-09: Updated project metadata. |
⏵ 3 | 2021-06-08 23:37:50 | announced | 2021-06-09: Updated project metadata. |
4 | 2024-10-22 05:22:40 | announced | 2024-10-22: Updated project metadata. |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: LC-MSMS,rat, retina proteome, data-independent acquisition, spectral library |
Contact List
Caroline May |
contact affiliation | Medizinisches Proteom-Center |
contact email | Caroline.May@rub.de |
lab head | |
Annika Guntermann |
contact affiliation | Medizinisches Proteom-Center |
contact email | Annika.Guntermann@rub.de |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/06/PXD021937 |
PRIDE project URI |
Repository Record List
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- PRIDE
- PXD021937
- Label: PRIDE project
- Name: Rat retinae data for use as spectral library, for pathway remodelling as well as protein mapping