PXD021937-1

PXD021937 is an original dataset announced via ProteomeXchange.

Title	Rat retinae data for use as spectral library, for pathway remodellingas well as protein mapping
Description	Spectral libraries generated by data-dependent acquisition (DDA) are a useful tool for the analysis of data created by data-independent acquisition (DIA) in mass spectrometry. The quality of DIA analysis is dependent on the quality of the spectral library. We used retinal rat tissue to create a spectral library of rats retina proteome. This data set may therefore be valuable for the future analysis of retinal proteins and research projects that focus on ocular disorders or function.
HostingRepository	PRIDE
AnnounceDate	2021-06-08
AnnouncementXML	Submission_2021-06-08_07:46:59.747.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Annika Guntermann
SpeciesList	scientific name: Rattus norvegicus (Rat); NCBI TaxID: 10116;
ModificationList	acetylated residue; monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive HF

Revision	Datetime	Status	ChangeLog Entry
0	2020-10-13 01:20:38	ID requested
⏵ 1	2021-06-08 07:47:00	announced
2	2021-06-08 23:35:45	announced	2021-06-09: Updated project metadata.
3	2021-06-08 23:37:50	announced	2021-06-09: Updated project metadata.
4	2024-10-22 05:22:40	announced	2024-10-22: Updated project metadata.

Dataset with its publication pending

submitter keyword: rat, retina proteome, LC-MSMS, data-independent acquisition, spectral library

Caroline May
contact affiliation	Medizinisches Proteom-Center
contact email	Caroline.May@rub.de
lab head
Annika Guntermann
contact affiliation	Medizinisches Proteom-Center
contact email	Annika.Guntermann@rub.de
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/06/PXD021937

PRIDE project URI

• PRIDE
  1. PXD021937
     1. Label: PRIDE project
     2. Name: Rat retinae data for use as spectral library, for pathway remodellingas well as protein mapping