PXD015702-2
PXD015702 is an original dataset announced via ProteomeXchange.
Dataset Summary
Title | CRISPR-Assisted Detection of RNA-Protein Interactions in Living Cells |
Description | We develop a CRISPR-Assisted RNA-Protein Interaction Detection method (CARPID), which leverages CRISPR/CasRx-based RNA targeting and proximity labeling to identify binding proteins of specific lncRNA in the native cellular context. |
HostingRepository | iProX |
AnnounceDate | 2020-05-20 |
AnnouncementXML | Submission_2020-06-23_05:22:22.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Liang Zhang |
SpeciesList | scientific name: Homo sapiens; NCBI TaxID: 9606; |
ModificationList | No PTMs are included in the dataset |
Instrument | Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
---|---|---|---|
0 | 2019-10-04 05:38:55 | ID requested | |
1 | 2020-06-23 05:18:26 | announced | |
⏵ 2 | 2020-06-23 05:22:24 | announced | 2020-06-23: Update publication information. |
Publication List
Yi W, Li J, Zhu X, Wang X, Fan L, Sun W, Liao L, Zhang J, Li X, Ye J, Chen F, Taipale J, Chan KM, Zhang L, Yan J, CRISPR-assisted detection of RNA-protein interactions in living cells. Nat Methods, 17(7):685-688(2020) [pubmed] |
Keyword List
submitter keyword: CRISPR/CasRx, lncRNAs , biotin ligase, Mass spectrometry |
Contact List
Liang Zhang | |
---|---|
contact affiliation | City university of Hong Kong |
contact email | liangzhang.28@cityu.edu.hk |
lab head | |
Liang Zhang | |
contact affiliation | City university of Hong Kong |
contact email | liangzhang.28@cityu.edu.hk |
dataset submitter |
Full Dataset Link List
iProX dataset URI |