PXD014960 is an
original dataset announced via ProteomeXchange.
Dataset Summary
| Title | An Integrated Transcriptome and Proteome Analysis Reveals New Insights of Fruit Russeting Formation in ‘Golden Delicious’ Apple |
| Description | Russeting of apple fruit is a non-invasive physiological disorder. It occurs mainly in 'Golden Delicious' apple and its hybrids, while understanding of its molecular mechanism is still limited. In this study, we used mRNA sequencing and an isobaric tag for relative and absolute quantitation-based quantitative (iTRAQ) proteomic analysis to detect changes in the expression levels of genes and proteins during russeting formation in russeted and non-russeted skin of 'Golden Delicious' apple. We set up three comparison groups representing the three developmental stages in the russeting formation process. With the formation of fruit russeting, there were 2856 differentially expressed genes and 942 differentially expressed proteins in the comparison groups as detected at the transcript level and protein level, respectively. A correlation analysis of the transcriptome and proteome data revealed related-genes involved in lignin biosynthesis are significant changes at different developmental stages during apple russeting formation. Some other transcription factors, such as MYBs, NACs and LIMs were also involved in apple russeting formation. In this study, one LIM transcription factor was preliminarily determined to be involved in lignin biosynthesis by combining to PAL-box element. Studying the identified genes and proteins will provide further insights into the molecular mechanisms controlling apple russeting formation. |
| HostingRepository | PRIDE |
| AnnounceDate | 2024-10-08 |
| AnnouncementXML | Submission_2024-10-08_11:10:30.629.xml |
| DigitalObjectIdentifier | |
| ReviewLevel | Peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Unsupported dataset by repository |
| PrimarySubmitter | Gao-peng Yuan |
| SpeciesList | scientific name: Rosaceae; NCBI TaxID: 3745; |
| ModificationList | iTRAQ8plex-116 reporter+balance reagent acylated residue |
| Instrument | 6520A Quadrupole Time-of-Flight LC/MS |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|
| 0 | 2019-08-08 07:38:15 | ID requested | |
| ⏵ 1 | 2024-10-08 11:10:31 | announced | |
Publication List
| 10.3390/ijms20184462; |
| Yuan G, Bian S, Han X, He S, Liu K, Zhang C, Cong P, An Integrated Transcriptome and Proteome Analysis Reveals New Insights into Russeting of Bagging and Non-Bagging "Golden Delicious" Apple. Int J Mol Sci, 20(18):(2019) [pubmed] |
Keyword List
| submitter keyword: fruit russeting formation |
| transcriptome |
| proteome |
| ‘Golden Delicious’ apple |
| lignin biosynthesis |
Contact List
| Pei-hua Cong |
|---|
| contact affiliation | 13998905918 |
| contact email | congph@163.com |
| lab head | |
| Gao-peng Yuan |
|---|
| contact affiliation | 13942982858 |
| contact email | yuangp329@163.com |
| dataset submitter | |
Full Dataset Link List
Dataset FTP location
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| PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD014960
- Label: PRIDE project
- Name: An Integrated Transcriptome and Proteome Analysis Reveals New Insights of Fruit Russeting Formation in ‘Golden Delicious’ Apple
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