PXD005720 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Reference dataset for EnCOUNTer tool development |
Description | Reference dataset used for the development of the EnCOUNTEr tool to both (i) score all characterized peptides using discriminant parameters to evidence mature protein N-termini and (ii) determine the N-terminus acetylation yield for the most reliable ones. |
HostingRepository | PRIDE |
AnnounceDate | 2017-03-14 |
AnnouncementXML | Submission_2017-03-14_08:25:21.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Willy Bienvenut |
SpeciesList | scientific name: Arabidopsis thaliana (Mouse-ear cress); NCBI TaxID: 3702; |
ModificationList | acetate labeling reagent (N-term) (heavy form: +3amu); 3x(2)H labeled N6-acetyl-L-lysine; iodoacetamide derivatized residue |
Instrument | LTQ Orbitrap |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2017-01-16 11:27:13 | ID requested | |
⏵ 1 | 2017-03-14 08:25:21 | announced | |
2 | 2024-10-22 04:34:47 | announced | 2024-10-22: Updated project metadata. |
Publication List
Dataset with its publication pending |
Keyword List
curator keyword: Technical |
submitter keyword: N-terminal modifications, Mature N-terminal, Acetylation quantitation, processing tool, organelle proteins, Transit peptide cleavage site |
Contact List
Willy Bienvenut |
contact affiliation | Institute of Integrative Biology of the Cell (I2BC), CEA, CNRS, Université Paris-Sud, Avenue de la Terrasse, F-91198 Gif-sur-Yvette cedex, France |
contact email | willy.bienvenut@i2bc.paris-saclay.fr |
lab head | |
Willy Bienvenut |
contact affiliation | CNRS |
contact email | willy.bienvenut@i2bc.paris-saclay.fr |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/03/PXD005720 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD005720
- Label: PRIDE project
- Name: Reference dataset for EnCOUNTer tool development