PXD005680 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Application of Simulation Model to Uncover the Mechanisms of Flooding Tolerance and Difference between Flooding and Drought in Soybean |
Description | To decipher stress responses under flooding and drought as well as flooding-tolerant mechanisms in soybean, the mathematic biological approach of simulation model was applied. Furthermore, wild-type soybean with ABA treatment and flooding-tolerant mutant line, which displayed flooding tolerance, were used as the flooding-tolerant materials. Proteins acquired by gel-free/label-free proteomic technique were used for simulation model of responses under different stresses and flooding tolerant. |
HostingRepository | PRIDE |
AnnounceDate | 2018-10-26 |
AnnouncementXML | Submission_2018-10-26_11:04:27.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Wang Xin |
SpeciesList | scientific name: Glycine max (Soybean) (Glycine hispida); NCBI TaxID: 3847; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | LTQ Orbitrap |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2017-01-10 01:52:21 | ID requested | |
⏵ 1 | 2018-10-26 11:04:29 | announced | |
2 | 2024-10-22 04:35:22 | announced | 2024-10-22: Updated project metadata. |
Publication List
Wang X, Sakata K, Komatsu S, An Integrated Approach of Proteomics and Computational Genetic Modification Effectiveness Analysis to Uncover the Mechanisms of Flood Tolerance in Soybeans. Int J Mol Sci, 19(5):(2018) [pubmed] |
Keyword List
curator keyword: Technical |
submitter keyword: abscisic acid, drought, flooding, mutant, proteomics, root, soybean, simulation |
Contact List
Setsuko Komatsu |
contact affiliation | NARO Institute of Crop Science |
contact email | skomatsu@affrc.go.jp |
lab head | |
Wang Xin |
contact affiliation | NARO Institute of Crop Science |
contact email | wangxin@affrc.go.jp |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/10/PXD005680 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD005680
- Label: PRIDE project
- Name: Application of Simulation Model to Uncover the Mechanisms of Flooding Tolerance and Difference between Flooding and Drought in Soybean