PXD005163-5

PXD005163 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	In-depth membrane proteomic study of breast cancer tissues
Description	Human breast cancer tissue samples from 18 patients with high-risk or low-risk MammaPrint breast cancer were analyzed. The membrane fractions were enriched, and the extracted proteins were reduced, alkylated, digested with Lys-C and Trypsin, and labelled with iTRAQ4plex: 114; high risk; 115; low risk. Identification results were filtered at 1% false discovery rate (FDR) thresholds by searching against a randomized decoy database using Mascot at peptide and protein levels.
HostingRepository	jPOST
AnnounceDate	2016-10-17
AnnouncementXML	Submission_2018-09-18_23:41:04.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD005163
ReviewLevel	Non peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Mariko Ito
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	S-carboxamidomethyl-L-cysteine; L-methionine sulfoxide; iTRAQ4plex-116 reporter+balance reagent N6-acylated lysine; iTRAQ4plex-116 reporter+balance reagent acylated N-terminal; iTRAQ4plex-116 reporter+balance reagent O4'-acylated tyrosine
Instrument	LTQ Orbitrap Velos

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2016-10-17 01:22:12	ID requested
1	2016-10-17 04:05:10	announced
2	2016-11-17 18:13:15	announced	Updated description.
3	2017-03-30 23:34:44	announced	Updated Repository support.
4	2017-03-31 00:12:18	announced	Updated DigitalObjectIdentifier.
⏵ 5	2018-09-18 23:41:05	announced	Updated CV, FTP location and Modification list.
6	2021-02-04 17:13:27	announced	2021-02-04: Updated FTP location.
7	2022-09-18 03:21:49	announced	2022-09-18: Updated FTP location.

Publication List

Dataset with its publication pending

Dataset with its publication pending

Keyword List

submitter keyword: membrane protein
breast cancer tissues
shotgun proteomics

submitter keyword: membrane protein

breast cancer tissues

shotgun proteomics

Contact List

Takeshi Tomonaga
lab head
Mariko Ito
contact affiliation	Kyoto Univ.
dataset submitter

Full Dataset Link List

jPOST dataset URI
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://jpost.pharm.kyoto-u.ac.jp/repository/JPST000201

jPOST dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://jpost.pharm.kyoto-u.ac.jp/repository/JPST000201