PXD004921-3

PXD004921 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Geoduck (Panopea generosa) gonad LC-MS/MS DIA
Description	Geoduck clams (Panopea generosa) were collected from Puget Sound, WA in November, 2014. Male and female geoduck gonads were sampled at three reproductive stages over the course of three months: early, middle, and late. Early stage indicates that the gonad cells are just beginning to differentiate and late stage indicates that the geoduck are ready to spawn. The goal of this study was to identify biomarkers of the geoduck reproductive cycle. Due to the restriction of our current data model we can not add multiple names as Lab Head. However, this Project has been equally led by Steven B. Roberts and Brook L. Nunn.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:31:54.529.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Emma Timmins-Schiffman
SpeciesList	scientific name: Panopea generosa; NCBI TaxID: 1049056;
ModificationList	No PTMs are included in the dataset
Instrument	Q Exactive

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2016-09-12 01:51:52	ID requested
1	2017-01-02 12:47:20	announced
2	2018-12-04 01:40:43	announced	Updated project metadata.
⏵ 3	2024-10-22 04:31:59	announced	2024-10-22: Updated project metadata.

Publication List

10.1021/acs.jproteome.7b00288;
Timmins-Schiffman EB, Crandall GA, Vadopalas B, Riffle ME, Nunn BL, Roberts SB, Integrating Discovery-driven Proteomics and Selected Reaction Monitoring To Develop a Noninvasive Assay for Geoduck Reproductive Maturation. J Proteome Res, 16(9):3298-3309(2017) [pubmed]

10.1021/acs.jproteome.7b00288;

Timmins-Schiffman EB, Crandall GA, Vadopalas B, Riffle ME, Nunn BL, Roberts SB, Integrating Discovery-driven Proteomics and Selected Reaction Monitoring To Develop a Noninvasive Assay for Geoduck Reproductive Maturation. J Proteome Res, 16(9):3298-3309(2017) [pubmed]

Keyword List

curator keyword: Biological
submitter keyword: gonad, DIA,geoduck, panopea, reproduction

curator keyword: Biological

submitter keyword: gonad, DIA,geoduck, panopea, reproduction

Contact List

Steven B. Roberts
contact affiliation	School of Aquatic and Fishery Sciences, University of Washington
contact email	sr320@uw.edu
lab head
Emma Timmins-Schiffman
contact affiliation	University of Washington
contact email	emsie25@gmail.com
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/01/PXD004921
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/01/PXD004921

PRIDE project URI

Repository Record List

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