PXD004921 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Geoduck (Panopea generosa) gonad LC-MS/MS DIA |
Description | Geoduck clams (Panopea generosa) were collected from Puget Sound, WA in November, 2014. Male and female geoduck gonads were sampled at three reproductive stages over the course of three months: early, middle, and late. Early stage indicates that the gonad cells are just beginning to differentiate and late stage indicates that the geoduck are ready to spawn. The goal of this study was to identify biomarkers of the geoduck reproductive cycle. Due to the restriction of our current data model we can not add multiple names as Lab Head. However, this Project has been equally led by Steven B. Roberts and Brook L. Nunn. |
HostingRepository | PRIDE |
AnnounceDate | 2018-12-04 |
AnnouncementXML | Submission_2018-12-04_01:40:41.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Emma Timmins-Schiffman |
SpeciesList | scientific name: Panopea generosa; NCBI TaxID: 1049056; |
ModificationList | No PTMs are included in the dataset |
Instrument | Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2016-09-12 01:51:52 | ID requested | |
1 | 2017-01-02 12:47:20 | announced | |
⏵ 2 | 2018-12-04 01:40:43 | announced | Updated project metadata. |
Publication List
Timmins-Schiffman EB, Crandall GA, Vadopalas B, Riffle ME, Nunn BL, Roberts SB, Integrating Discovery-driven Proteomics and Selected Reaction Monitoring To Develop a Noninvasive Assay for Geoduck Reproductive Maturation. J Proteome Res, 16(9):3298-3309(2017) [pubmed] |
Keyword List
curator keyword: Biological |
submitter keyword: geoduck, panopea, gonad, reproduction, DIA |
Contact List
Steven B. Roberts |
contact affiliation | School of Aquatic and Fishery Sciences, University of Washington |
contact email | sr320@uw.edu |
lab head | |
Emma Timmins-Schiffman |
contact affiliation | University of Washington |
contact email | emsie25@gmail.com |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/01/PXD004921 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD004921
- Label: PRIDE project
- Name: Geoduck (Panopea generosa) gonad LC-MS/MS DIA