PXD002869 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Enterococcus faecalis V583 - data analysis |
Description | Genome-scale models represent the link between an organism's genetic information and experimentally observable biological phenotypes. They facilitate metabolic engineering and the discovery of network properties such as the identification of novel drug targets. Most commonly, metabolite consumption data is used to limit the solution space, sometimes in combination with gene expression data. However, information about gene expression only poorly correlates with the abundance of the respective proteins within the cell. As such, we developed a method to map and integrate the whole-cell proteome into genome-scale models on the example of lactic acid bacteria (LAB). To the best of our knowledge, this work represents the first effort to integrate proteome data into genome-scale models on such a scale . |
HostingRepository | PRIDE |
AnnounceDate | 2020-03-12 |
AnnouncementXML | Submission_2020-03-12_03:38:47.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Ben Collins |
SpeciesList | scientific name: Enterococcus faecalis (Streptococcus faecalis); NCBI TaxID: 1351; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | TripleTOF 5600 |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2015-09-07 04:40:51 | ID requested | |
1 | 2016-12-07 05:11:21 | announced | |
⏵ 2 | 2020-03-12 03:38:48 | announced | 2020-03-12: Updated project metadata. |
3 | 2023-11-14 08:48:51 | announced | 2023-11-14: Updated project metadata. |
Publication List
Keyword List
curator keyword: Biological |
submitter keyword: EFV583, SWATH, pH_shift |
Contact List
Ursula Kummer |
contact affiliation | Department of Modeling of Biological Processes COS, Heidelberg University |
contact email | ursula.kummer@bioquant.uni-heidelberg.de |
lab head | |
Ben Collins |
contact affiliation | ETH Zurich |
contact email | collins@imsb.biol.ethz.ch |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2016/12/PXD002869 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD002869
- Label: PRIDE project
- Name: Enterococcus faecalis V583 - data analysis