PXD000954-4

PXD000954 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	The Pan-Human Library: A repository of assays to quantify 10 000 proteins by SWATH-MS / SWATH-MS validation data
Description	The “Pan-Human Library” is a compendium of highly specific assays covering more than 10 000 human proteins and enabling their targeted analysis in SWATH-MS datasets acquired from research or clinical specimens. This dataset contains validation SWATH-MS data and OpenSWATH results of whole cell lysates of HeLa (guot_L130330_005_SW, guot_L130330_006_SW, guot_L130330_007_SW) and U2OS cells (gout_L130330_013_SW, gout_L130330_014_SW, gout_L130330_015_SW). Further, the combined assay library (phl004_s32.csv) and the sample-specific assay libraries (phl004_sshela_s32.csv, phl004_ssu2os.csv) used for the analysis are provided.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:21:12.044.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	George Rosenberger
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	No PTMs are included in the dataset
Instrument	TripleTOF 5600

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2014-05-02 07:08:38	ID requested
1	2014-08-08 05:42:06	announced
2	2014-10-23 03:38:56	announced	Updated project metadata.
3	2015-09-23 05:52:26	announced	Updated project metadata.
⏵ 4	2024-10-22 04:21:20	announced	2024-10-22: Updated project metadata.

Publication List

Rosenberger G, Koh CC, Guo T, R, ö, st HL, Kouvonen P, Collins BC, Heusel M, Liu Y, Caron E, Vichalkovski A, Faini M, Schubert OT, Faridi P, Ebhardt HA, Matondo M, Lam H, Bader SL, Campbell DS, Deutsch EW, Moritz RL, Tate S, Aebersold R, A repository of assays to quantify 10,000 human proteins by SWATH-MS. Sci Data, 1():140031(2014) [pubmed]
10.1038/sdata.2014.31;

Rosenberger G, Koh CC, Guo T, R, ö, st HL, Kouvonen P, Collins BC, Heusel M, Liu Y, Caron E, Vichalkovski A, Faini M, Schubert OT, Faridi P, Ebhardt HA, Matondo M, Lam H, Bader SL, Campbell DS, Deutsch EW, Moritz RL, Tate S, Aebersold R, A repository of assays to quantify 10,000 human proteins by SWATH-MS. Sci Data, 1():140031(2014) [pubmed]

10.1038/sdata.2014.31;

Keyword List

ProteomeXchange project tag: deep learning, retention time, benchmarking, machine learning
curator keyword: Technical, Biological
submitter keyword: Human, OpenSWATH, SWATH, SWATH-MS, Targeted Proteomics, Pan-Human Library

ProteomeXchange project tag: deep learning, retention time, benchmarking, machine learning

curator keyword: Technical, Biological

submitter keyword: Human, OpenSWATH, SWATH, SWATH-MS, Targeted Proteomics, Pan-Human Library

Contact List

Ruedi Aebersold
contact affiliation	Institute of Molecular Systems Biology ETH Zurich
contact email	aebersold@imsb.biol.ethz.ch
lab head
George Rosenberger
contact affiliation	Columbia University
contact email	gr2578@cumc.columbia.edu
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/08/PXD000954
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/08/PXD000954

PRIDE project URI

Repository Record List

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