PXD000443-3

PXD000443 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Chr16-HPP. Shotgun Analysis improvement. JPR HPP Special issue 2013. Jurkat Cell line.
Description	The Chromosome 16 Consortium is integrated in the Human Proteome Project that aims to develop an entire map of the proteins encoded by the human genome following a gene-centric strategy (C-HPP) to make progress in the understanding of human biology in health and disease (B/D-HPP). To do this study four human cell lines were selected, MCF7 epithelial cells, CCD18 colon fibroblasts, Ramos and Jurkat B and T lymphocytes respectively. In particular, this subset includes all the data regarding the Jurkat cell line. 2 laboratories contributed to compile all the reported data.
HostingRepository	PRIDE
AnnounceDate	2024-10-07
AnnouncementXML	Submission_2024-10-07_09:06:05.426.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD000443
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	J. Alberto Medina-Aunon
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	acetylated residue; monohydroxylated residue; iodoacetamide derivatized residue
Instrument	TripleTOF 5600; Q Exactive

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2013-09-03 02:07:02	ID requested
1	2013-09-05 04:20:25	announced
1	2013-11-19 16:36:37	announced
2	2024-10-07 09:05:53	announced	2024-10-07: Updated project metadata.
⏵ 3	2024-10-07 09:06:06	announced	2024-10-07: Updated project metadata.

Publication List

10.6019/PXD000443;
10.1021/pr400721r;
Segura V, Medina-Aunon JA, Mora MI, Mart, í, nez-Bartolom, é S, Abian J, Aloria K, Ant, ú, nez O, Arizmendi JM, Azkargorta M, Barcel, ó, -Batllori S, Beaskoetxea J, Bech-Serra JJ, Blanco F, Monteiro MB, C, á, ceres D, Canals F, Carrascal M, Casal JI, Clemente F, Colom, é N, Dasilva N, D, í, az P, Elortza F, Fern, á, ndez-Puente P, Fuentes M, Gallardo O, Gharbi SI, Gil C, Gonz, á, lez-Tejedo C, Hern, á, ez ML, Lombard, í, a M, Lopez-Lucendo M, Marcilla M, Mato JM, Mendes M, Oliveira E, Orera I, Pascual-Montano A, Prieto G, Ruiz-Romero C, S, á, nchez del Pino MM, Tabas-Madrid D, Valero ML, Vialas V, Villanueva J, Albar JP, Corrales FJ, Surfing transcriptomic landscapes. A step beyond the annotation of chromosome 16 proteome. J Proteome Res, 13(1):158-72(2014) [pubmed]

10.6019/PXD000443;

10.1021/pr400721r;

Segura V, Medina-Aunon JA, Mora MI, Mart, í, nez-Bartolom, é S, Abian J, Aloria K, Ant, ú, nez O, Arizmendi JM, Azkargorta M, Barcel, ó, -Batllori S, Beaskoetxea J, Bech-Serra JJ, Blanco F, Monteiro MB, C, á, ceres D, Canals F, Carrascal M, Casal JI, Clemente F, Colom, é N, Dasilva N, D, í, az P, Elortza F, Fern, á, ndez-Puente P, Fuentes M, Gallardo O, Gharbi SI, Gil C, Gonz, á, lez-Tejedo C, Hern, á, ez ML, Lombard, í, a M, Lopez-Lucendo M, Marcilla M, Mato JM, Mendes M, Oliveira E, Orera I, Pascual-Montano A, Prieto G, Ruiz-Romero C, S, á, nchez del Pino MM, Tabas-Madrid D, Valero ML, Vialas V, Villanueva J, Albar JP, Corrales FJ, Surfing transcriptomic landscapes. A step beyond the annotation of chromosome 16 proteome. J Proteome Res, 13(1):158-72(2014) [pubmed]

Keyword List

ProteomeXchange project tag: Chromosome-centric Human Proteome Project (C-HPP), Human Proteome Project
submitter keyword: Chromosome centric,Networking,MIAPE,HPP

ProteomeXchange project tag: Chromosome-centric Human Proteome Project (C-HPP), Human Proteome Project

submitter keyword: Chromosome centric,Networking,MIAPE,HPP

Contact List

J. Alberto Medina-Aunon
contact affiliation	Proteomics - Bioinformatics
contact email	jamedina@proteored.org
lab head
J. Alberto Medina-Aunon
contact affiliation	Proteomics - Bioinformatics
contact email	jamedina@proteored.org
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2013/09/PXD000443
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2013/09/PXD000443

PRIDE project URI

Repository Record List

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