PXD000443-1

PXD000443 is an original dataset announced via ProteomeXchange.

Title	Chr16-HPP. Shotgun Analysis improvement. JPR HPP Special issue 2013. Jurkat Cell line.
Description	The Chromosome 16 Consortium is integrated in the Human Proteome Project that aims to develop an entire map of the proteins encoded by the human genome following a gene-centric strategy (C-HPP) to make progress in the understanding of human biology in health and disease (B/D-HPP). To do this study four human cell lines were selected, MCF7 epithelial cells, CCD18 colon fibroblasts, Ramos and Jurkat B and T lymphocytes respectively. In particular, this subset includes all the data regarding the Jurkat cell line. 2 laboratories contributed to compile all the reported data.
HostingRepository	PRIDE
AnnounceDate	2013-09-05
AnnouncementXML	Submission_2013-09-05_04:20:25.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD000443
ReviewLevel	Non peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Alberto Medina-Aunon
SpeciesList	scientific name: Homo Sapiens; NCBI TaxID: 9606; scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	iodoacetamide derivatized residue; acetylated residue; fragment neutral loss: 63.998285; monohydroxylated residue; fragment neutral loss: 0.0
Instrument	collision gas; dissociation method

Revision	Datetime	Status	ChangeLog Entry
0	2013-09-03 02:07:02	ID requested
⏵ 1	2013-09-05 04:20:25	announced
⏵ 1	2013-11-19 16:36:37	announced
2	2024-10-07 09:05:53	announced	2024-10-07: Updated project metadata.
3	2024-10-07 09:06:06	announced	2024-10-07: Updated project metadata.

Dataset with its publication pending

submitter keyword: HPP,MIAPE,Networking,Chromosome centric

Alberto Medina-Aunon
contact affiliation	Centro Nacional de Biotecnologia, CSIC, Madrid, Spain.
contact email	jamedina@cnb.csic.es
Kerman Aloria
contact attribute	Department:Proteomics Core facility e-mail:kerman.aloria@ehu.es
contact affiliation	University of the Basque Country
contact email	kerman.aloria@ehu.es
Severine Gharbi
contact attribute	Department:Proteomics Unit Position:researcher e-mail:sgharbi@cnb.csic.es
contact affiliation	CNB-CSIC
contact email	sgharbi@cnb.csic.es

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/2013/09/PXD000443

• PRIDE
  1. 31020
     1. InstrumentRef: INSTRUMENT_2
     2. Label: SPHPP_CNB_JURKAT_TT_CHAPS_RPB_R1_PG_curated
     3. ModificationList: iodoacetamide derivatized residue, fragment neutral loss, monohydroxylated residue, acetylated residue, fragment neutral loss,
     4. Name: SPHPP_CNB_JURKAT_TT_CHAPS_RPB_R1_PG_curated
     5. PublicationRef: pending
  2. 31019
     1. InstrumentRef: INSTRUMENT_1
     2. Label: SPHPP_UPV_JURKAT_QE_CHAPS_RPB_R1_curated_FDR1_protein
     3. ModificationList: iodoacetamide derivatized residue, acetylated residue, fragment neutral loss, monohydroxylated residue, fragment neutral loss,
     4. Name: SPHPP_UPV_JURKAT_QE_CHAPS_RPB_R1_curated_FDR1_protein
     5. PublicationRef: pending