PXD000001-11

PXD000001 is an original dataset announced via ProteomeXchange.

Title	TMT spikes - Using R and Bioconductor for proteomics data analysis
Description	Expected reporter ion ratios: Erwinia peptides: 1:1:1:1:1:1 Enolase spike (sp|P00924|ENO1_YEAST): 10:5:2.5:1:2.5:10 BSA spike (sp|P02769|ALBU_BOVIN): 1:2.5:5:10:5:1 PhosB spike (sp|P00489|PYGM_RABIT): 2:2:2:2:1:1 Cytochrome C spike (sp|P62894|CYC_BOVIN): 1:1:1:1:1:2
HostingRepository	PRIDE
AnnounceDate	2024-10-07
AnnouncementXML	Submission_2024-10-07_08:37:18.640.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD000001
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Laurent Gatto
SpeciesList	scientific name: Erwinia carotovora; NCBI TaxID: 554;
ModificationList	TMT6plex-126 reporter+balance reagent acylated residue; methylthiolated residue; monohydroxylated residue
Instrument	LTQ Orbitrap Velos

Revision	Datetime	Status	ChangeLog Entry
0	2012-05-09 10:10:58	ID requested
1	2012-05-11 14:28:37	announced
1	2014-07-24 07:59:33	announced
2	2012-05-17 13:28:16	announced	missing
2	2015-01-16 00:30:32	announced	Updated project metadata.
3	2012-05-18 01:37:22	announced	missing
3	2017-06-21 00:30:28	announced	Updated project metadata.
4	2012-05-18 02:14:44	announced	missing
4	2017-10-20 05:44:30	announced	Updated project metadata.
5	2012-05-18 02:21:39	announced	missing
6	2012-08-06 06:09:48	announced	missing
7	2012-10-02 07:50:01	announced	missing
8	2012-10-02 08:07:35	announced	missing
9	2013-06-04 04:03:53	announced	Add reference
10	2024-10-07 02:30:48	announced	2024-10-07: Updated project metadata.
⏵ 11	2024-10-07 08:37:26	announced	2024-10-07: Updated project metadata.

Gatto L, Christoforou A, Using R and Bioconductor for proteomics data analysis. Biochim Biophys Acta, 1844(1 Pt A):42-51(2014) [pubmed]

10.6019/PXD000001;

10.1016/j.bbapap.2013.04.032;

ProteomeXchange project tag: PRIME-XS Project

submitter keyword: spikes,TMT,Eriwinia

Laurent Gatto
contact affiliation	Department of Biochemistry, University of Cambridge
contact email	lg390@cam.ac.uk
lab head
Laurent Gatto
contact affiliation	Department of Biochemistry, University of Cambridge
contact email	lg390@cam.ac.uk
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2012/03/PXD000001

PRIDE project URI

• PRIDE
  1. PXD000001
     1. Label: PRIDE project
     2. Name: TMT spikes - Using R and Bioconductor for proteomics data analysis