PXD000001-1

PXD000001 is an original dataset announced via ProteomeXchange.

Title	TMT spikes
Description	Expected reporter ion ratios: Erwinia peptides: 1:1:1:1:1:1 Enolase spike (sp|P00924|ENO1_YEAST): 10:5:2.5:1:2.5:10 BSA spike (sp|P02769|ALBU_BOVIN): 1:2.5:5:10:5:1 PhosB spike (sp|P00489|PYGM_RABIT): 2:2:2:2:1:1 Cytochrome C spike (sp|P62894|CYC_BOVIN): 1:1:1:1:1:2
HostingRepository	PRIDE
AnnounceDate	2013-06-04
AnnouncementXML	Submission_2013-06-04_04:03:53.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD000001
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Laurent Gatto
SpeciesList	scientific name: Erwinia carotovora; NCBI TaxID: 554;
ModificationList	TMT6plex-126 reporter+balance reagent acylated residue; monohydroxylated residue; methylthiolated residue
Instrument	orbitrap

Revision	Datetime	Status	ChangeLog Entry
0	2012-05-09 10:10:58	ID requested
⏵ 1	2012-05-11 14:28:37	announced
⏵ 1	2014-07-24 07:59:33	announced
2	2012-05-17 13:28:16	announced	missing
2	2015-01-16 00:30:32	announced	Updated project metadata.
3	2012-05-18 01:37:22	announced	missing
3	2017-06-21 00:30:28	announced	Updated project metadata.
4	2012-05-18 02:14:44	announced	missing
4	2017-10-20 05:44:30	announced	Updated project metadata.
5	2012-05-18 02:21:39	announced	missing
6	2012-08-06 06:09:48	announced	missing
7	2012-10-02 07:50:01	announced	missing
8	2012-10-02 08:07:35	announced	missing
9	2013-06-04 04:03:53	announced	Add reference
10	2024-10-07 02:30:48	announced	2024-10-07: Updated project metadata.
11	2024-10-07 08:37:26	announced	2024-10-07: Updated project metadata.

Gatto L, Christoforou A, Using R and Bioconductor for proteomics data analysis. Biochim Biophys Acta, 1844(1 Pt A):42-51(2014) [pubmed]

submitter keyword: TMT,Eriwinia,spikes

Laurent Gatto
contact affiliation	University of Cambridge
contact email	lg390@cam.ac.uk
Kathryn S. Lilley
contact attribute	ksl23@cam.ac.uk
contact affiliation	Cambridge Centre for Proteomics, Cambridge System Biology Centre, University of Cambridge, Department of Biochemistry, Tennis Court Road, Cambridge, CB2 1QR, U
contact email	ksl23@cam.ac.uk
Andy Christoforou
contact attribute	ac587@cam.ac.uk
contact affiliation	Cambridge Centre for Proteomics, Cambridge System Biology Centre, University of Cambridge, Department of Biochemistry, Tennis Court Road, Cambridge, CB2 1QR, UK
contact email	ac587@cam.ac.uk

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/2012/03/PXD000001

• PRIDE
  1. 22134
     1. InstrumentRef: INSTRUMENT_1
     2. Label: TMTspikes
     3. ModificationList: TMT6plex-126 reporter+balance reagent acylated residue, monohydroxylated residue, methylthiolated residue,
     4. Name: TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01
     5. PublicationRef: PMID23692960