PXD004536 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Proteomics of Candidatus Thiodiazotropha endoloripes, the chemosynthetic symbiont of the lucinid clam Loripes lucinalis from the Bay of Fetovaia |
Description | The Lucinidae is a large family of marine bivalves. They occur in diverse habitats from shallow-water seagrass sediments to deep-sea hydrothermal vents. All members of this family so far investigated host intracellular sulfur-oxidizing symbionts that belong to the Gammaproteobacteria. We recently discovered the capability for nitrogen fixation in draft genomes of the symbionts of Loripes lucinalis from the Bay of Fetovaia, Elba, Italy. With proteomics, we investigated whether the genes for nitrogen fixation are expressed by the symbionts. |
HostingRepository | PRIDE |
AnnounceDate | 2016-08-19 |
AnnouncementXML | Submission_2016-10-24_23:53:43.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Manuel Kleiner |
SpeciesList | scientific name: Bacteria; NCBI TaxID: 2; |
ModificationList | monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue |
Instrument | Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2016-07-11 01:28:35 | ID requested | |
1 | 2016-08-19 04:51:21 | announced | |
⏵ 2 | 2016-10-24 23:53:45 | announced | Updated publication reference for PubMed record(s): 27775707. |
Publication List
Petersen JM, Kemper A, Gruber-Vodicka H, Cardini U, van der Geest M, Kleiner M, Bulgheresi S, Mu, ß, mann M, Herbold C, Seah BK, Antony CP, Liu D, Belitz A, Weber M, Chemosynthetic symbionts of marine invertebrate animals are capable of nitrogen fixation. Nat Microbiol, 2(1):16195(2016) [pubmed] |
Keyword List
curator keyword: Biological |
submitter keyword: 1D-LC, metaproteomics, metaproteome, chemosynthetic symbiosis, nitrogenase |
Contact List
Jillian Petersen |
contact affiliation | University of Vienna, Division of Microbial Ecology |
contact email | petersen@microbial-ecology.net |
lab head | |
Manuel Kleiner |
contact affiliation | University of Calgary |
contact email | manuel.kleiner@ucalgary.ca |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2016/08/PXD004536 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD004536
- Label: PRIDE project
- Name: Proteomics of Candidatus Thiodiazotropha endoloripes, the chemosynthetic symbiont of the lucinid clam Loripes lucinalis from the Bay of Fetovaia