PXD004536-1

PXD004536 is an original dataset announced via ProteomeXchange.

Title	Proteomics of Candidatus Thiodiazotropha endoloripes, the chemosynthetic symbiont of the lucinid clam Loripes lucinalis from the Bay of Fetovaia
Description	The Lucinidae is a large family of marine bivalves. They occur in diverse habitats from shallow-water seagrass sediments to deep-sea hydrothermal vents. All members of this family so far investigated host intracellular sulfur-oxidizing symbionts that belong to the Gammaproteobacteria. We recently discovered the capability for nitrogen fixation in draft genomes of the symbionts of Loripes lucinalis from the Bay of Fetovaia, Elba, Italy. With proteomics, we investigated whether the genes for nitrogen fixation are expressed by the symbionts.
HostingRepository	PRIDE
AnnounceDate	2016-08-19
AnnouncementXML	Submission_2016-08-19_04:51:20.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Manuel Kleiner
SpeciesList	scientific name: Bacteria; NCBI TaxID: 2;
ModificationList	monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2016-07-11 01:28:35	ID requested
⏵ 1	2016-08-19 04:51:21	announced
2	2016-10-24 23:53:45	announced	Updated publication reference for PubMed record(s): 27775707.

Dataset with its publication pending

curator keyword: Biological

submitter keyword: 1D-LC, metaproteomics, metaproteome, chemosynthetic symbiosis, nitrogenase

Jillian Petersen
contact affiliation	University of Vienna, Division of Microbial Ecology
contact email	petersen@microbial-ecology.net
lab head
Manuel Kleiner
contact affiliation	University of Calgary
contact email	manuel.kleiner@ucalgary.ca
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2016/08/PXD004536

PRIDE project URI

• PRIDE
  1. PXD004536
     1. Label: PRIDE project
     2. Name: Proteomics of Candidatus Thiodiazotropha endoloripes, the chemosynthetic symbiont of the lucinid clam Loripes lucinalis from the Bay of Fetovaia