PXD000092-3
PXD000092 is an original dataset announced via ProteomeXchange.
Dataset Summary
Title | Human Chr18. 25 light, 17 heavy synth peps for 21 prots (Zgoda, et al.) |
Description | Dataset QC1 was acquired to elaborate the transition groups for the proteotypic peptides of 21 human proteins encoded by chromosome 18. Preliminary transition groups were extracted from the results of MRM scouting of depleted plasma and liver and organized into 9 MRM assays by groups named A to E with least overlapping of RT-window of proteotypic peptides separately for light (L) and heavy (H). Decoy transitions were generated for each assay by ADD_RANDOM algorithm of mGen. Data acquisition for each assay was conducted using the synthetic peptide mixtures in five technical runs on the triple-quadrupole mass-spectrometer. |
HostingRepository | PeptideAtlas |
AnnounceDate | 2012-12-12 |
AnnouncementXML | Submission_2012-12-11_17:14:17.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by respository |
PrimarySubmitter | Aleksey Filimonov |
SpeciesList | scientific name: Homo sapiens; NCBI TaxID: 9606; |
ModificationList | 6x(13)C labeled L-leucine |
Instrument | Agilent 6410 Triple Quad |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
---|---|---|---|
0 | 2012-12-10 17:29:58 | ID requested | |
1 | 2012-12-10 17:31:51 | announced | |
2 | 2012-12-11 11:42:52 | announced | missing |
⏵ 3 | 2012-12-11 17:14:17 | announced | missing |
4 | 2014-03-12 13:28:12 | announced | update LabHead |
Publication List
Zgoda, et al, "Chromosome 18 transcriptome profiling and targeted proteome mapping in depleted plasma, liver tissue and HepG2 cells", J Proteome Res, submitted |
Keyword List
curator keyword: selected reaction monitoring, SRM, targeted |
Contact List
Aleksey Filimonov | |
---|---|
contact role | Data submitter |
contact email | filimonov.a.d@gmail.com |
Aleksey Filimonov | |
contact URL | |
contact email | filimonov.a.d@gmail.com |
role type | Principal investigator for project (as listed in PeptideAtlas) |
contact organization |
Full Dataset Link List
PeptideAtlas dataset URI |
PASSEL transition group browser URI |