PXD000092-2

PXD000092 is an original dataset announced via ProteomeXchange.

Title	Human Chr18. 25 light, 17 heavy synth peps for 21 prots (Zgoda, et al.)
Description	Dataset QC1 was acquired to elaborate the transition groups for the proteotypic peptides of 21 human proteins encoded by chromosome 18. Preliminary transition groups were extracted from the results of MRM scouting of depleted plasma and liver and organized into 9 MRM assays by groups named A to E with least overlapping of RT-window of proteotypic peptides separately for light (L) and heavy (H). Decoy transitions were generated for each assay by ADD_RANDOM algorithm of mGen. Data acquisition for each assay was conducted using the synthetic peptide mixtures in five technical runs on the triple-quadrupole mass-spectrometer.
HostingRepository	PeptideAtlas
AnnounceDate	2012-12-12
AnnouncementXML	Submission_2012-12-11_17:14:17.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by respository
PrimarySubmitter	Aleksey Filimonov
SpeciesList	scientific name: Homo sapiens; NCBI TaxID: 9606;
ModificationList	6x(13)C labeled L-leucine
Instrument	Agilent 6410 Triple Quad

Revision	Datetime	Status	ChangeLog Entry
0	2012-12-10 17:29:58	ID requested
1	2012-12-10 17:31:51	announced
⏵ 2	2012-12-11 11:42:52	announced	missing
3	2012-12-11 17:14:17	announced	missing
4	2014-03-12 13:28:12	announced	update LabHead

Zgoda, et al, "Chromosome 18 transcriptome profiling and targeted proteome mapping in depleted plasma, liver tissue and HepG2 cells", J Proteome Res, submitted

curator keyword: selected reaction monitoring, SRM, targeted

Aleksey Filimonov
contact role	Data submitter
contact email	filimonov.a.d@gmail.com
Aleksey Filimonov
contact URL
contact email	filimonov.a.d@gmail.com
role type	Principal investigator for project (as listed in PeptideAtlas)
contact organization

PeptideAtlas dataset URI

PASSEL transition group browser URI